Psyllid ID: psy16115

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MHEINTVQWTLGFKRRVSPVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPLV
Secondary Structure (PSIPRED)
ccccccEEEEEEccccccccccccccccHHHHHHHHHHHcccccEEEEcEEEEHHccHHHcccccccEEccccccccHHHHcccccccccccccHHHHHHHHHcEEEcccEEEEEccccccHHHHHHHcccccEEEEEEccHHHHHHHHHcccEEEEHHHHHccccEEEEcccccccccHHHHHccccccEEEccccccccccccccccccccEEEccccccEEEccccccccccEEEEEEccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccccHccccccEcccccHHHHHHHHHHHHHccccHcccEEEcccHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHcccEEccHHHHcccccEEEEcccccccEcHHHHccccccEEEEEcccccccEcHHHHHHHccEEEEEEccEEEEEccccccccccEEEEEEccccHHHHHHHcccccc
Coil and Loop (DISEMBL)
MHEINTVqwtlgfkrrvspvcirsnpliIPQALALIELFnapagryksdvyllpkKMDEYVASLHLPTFDAHLTELSDEQAKYMglnkagpfkpsyyslkrstdvmfggKQVVLCGygevgkgccqslkglgcvIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMdkmkngcvvcnmghsnteidvnslrtpdltwEKVRSQVDhviwpdvnlknntvidlfrkpksRLYLEILQTCPLV
Flexible Loop (DISEMBL)
mheintvqwtlgfkrrvsPVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTatgnknvvtrehmdkMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVdhviwpdvnlknntvidlfrkpksrlyleilqtcplv
Low Complexity Region (SEG)
MHEINTVQWTLGFKRRVSPVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPLV
Disordered region (IsUnstruct)
***INTVQWTLGFKRRVSPVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTC***
Disordered Region (DISOPRED)
***INTVQWTLGFKRRVSPVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPLV
Disordered Region (DISEMBL)
MHEINTVQWTLGFKRRVSPVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPLV
Disordered Region (DISPRO)
*HEINTVQWTLGFKRRVSPVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPLV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHEINTVQWTLGFKRRVSPVCIRSNPLIIPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q80SW1	530	Putative adenosylhomocyst	yes	N/A	0.503	0.245	0.846	9e-65
O43865	530	Putative adenosylhomocyst	yes	N/A	0.503	0.245	0.846	9e-65
Q96HN2	611	Putative adenosylhomocyst	no	N/A	0.503	0.212	0.823	7e-64
Q68FL4	613	Putative adenosylhomocyst	no	N/A	0.503	0.212	0.823	8e-64
Q5R889	508	Putative adenosylhomocyst	no	N/A	0.507	0.257	0.809	5e-63
P50245	492	Putative adenosylhomocyst	no	N/A	0.503	0.264	0.786	2e-62
Q7NZF7	466	Adenosylhomocysteinase OS	yes	N/A	0.5	0.276	0.572	4e-42
A9KD88	438	Adenosylhomocysteinase OS	yes	N/A	0.5	0.294	0.580	1e-41
B6J6H1	438	Adenosylhomocysteinase OS	yes	N/A	0.5	0.294	0.580	1e-41
Q83A77	438	Adenosylhomocysteinase OS	yes	N/A	0.5	0.294	0.580	2e-41

>sp|Q80SW1|SAHH2_MOUSE Putative adenosylhomocysteinase 2 OS=Mus musculus GN=Ahcyl1 PE=1 SV=1

 Score =  246 bits (629), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query: 99  LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
           LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct: 301 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 360

Query: 159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
           NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct: 361 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 420

Query: 219 SQVDHVIWPD 228
           SQVDHVIWPD
Sbjct: 421 SQVDHVIWPD 430

Mus musculus (taxid: 10090)
EC: 3EC: .EC: 3EC: .EC: 1EC: .EC: 1

>sp|O43865|SAHH2_HUMAN Putative adenosylhomocysteinase 2 OS=Homo sapiens GN=AHCYL1 PE=1 SV=2

 Score =  246 bits (629), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query: 99  LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
           LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct: 301 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 360

Query: 159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
           NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct: 361 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 420

Query: 219 SQVDHVIWPD 228
           SQVDHVIWPD
Sbjct: 421 SQVDHVIWPD 430

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q96HN2|SAHH3_HUMAN Putative adenosylhomocysteinase 3 OS=Homo sapiens GN=AHCYL2 PE=1 SV=1

 Score =  243 bits (621), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 107/130 (82%), Positives = 122/130 (93%)

Query: 99  LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
           LKR+TD+MFGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKL
Sbjct: 382 LKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKL 441

Query: 159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
           NEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct: 442 NEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVR 501

Query: 219 SQVDHVIWPD 228
           SQVDHVIWPD
Sbjct: 502 SQVDHVIWPD 511

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q68FL4|SAHH3_MOUSE Putative adenosylhomocysteinase 3 OS=Mus musculus GN=Ahcyl2 PE=1 SV=1

 Score =  243 bits (621), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 107/130 (82%), Positives = 122/130 (93%)

Query: 99  LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
           LKR+TD+MFGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VKL
Sbjct: 384 LKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKL 443

Query: 159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
           NEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct: 444 NEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVR 503

Query: 219 SQVDHVIWPD 228
           SQVDHVIWPD
Sbjct: 504 SQVDHVIWPD 513

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q5R889|SAHH3_PONAB Putative adenosylhomocysteinase 3 OS=Pongo abelii GN=AHCYL2 PE=2 SV=1

 Score =  241 bits (614), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 106/131 (80%), Positives = 122/131 (93%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            LKR+TD+MFGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VK
Sbjct: 278 GLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVK 337

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCN+GHSNTEIDV SLRTP+LTWE+V
Sbjct: 338 LNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNIGHSNTEIDVASLRTPELTWERV 397

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 398 RSQVDHVIWPD 408

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|P50245|SAHH2_DROME Putative adenosylhomocysteinase 2 OS=Drosophila melanogaster GN=Ahcy89E PE=2 SV=2

 Score =  239 bits (609), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 103/131 (78%), Positives = 123/131 (93%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKR+TD+MFGGKQVV+CGYG+VGKGC QSLKG GC++Y+TE+DPICALQA MDGF VV+
Sbjct: 263 SLKRTTDIMFGGKQVVICGYGDVGKGCAQSLKGQGCIVYVTEVDPICALQAAMDGFRVVR 322

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIRTVD+VVTATGNKNV+TR+HM++MKNGC++CNMGHS +EIDVN L TP+LTWE+V
Sbjct: 323 LNEVIRTVDVVVTATGNKNVITRDHMNRMKNGCILCNMGHSCSEIDVNGLHTPELTWERV 382

Query: 218 RSQVDHVIWPD 228
           RSQVDH+ WPD
Sbjct: 383 RSQVDHIRWPD 393

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q7NZF7|SAHH_CHRVO Adenosylhomocysteinase OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ahcY PE=3 SV=1

 Score =  171 bits (434), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 75/131 (57%), Positives = 100/131 (76%), Gaps = 2/131 (1%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC QSL+GLG  +++TEIDPICALQA M+G+ VV+
Sbjct: 238 GIKRATDVMVAGKVAVVLGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVR 297

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++EV    DI VTATGN  V+T EHM KM+N  ++CN+GH ++EI+V SLR     WE +
Sbjct: 298 MDEVADQADIFVTATGNVGVITHEHMKKMRNNAIICNIGHFDSEIEVASLR--QYQWENI 355

Query: 218 RSQVDHVIWPD 228
           + QVDH+I+PD
Sbjct: 356 KPQVDHIIFPD 366

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) (taxid: 243365)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|A9KD88|SAHH_COXBN Adenosylhomocysteinase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ahcY PE=3 SV=2

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 101/131 (77%), Gaps = 2/131 (1%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           S+KR+TDVM  GK+VV+CGYG+VGKGC QSL+  G  +YITEIDPICALQA M+G+ VV 
Sbjct: 210 SIKRATDVMIAGKRVVVCGYGDVGKGCAQSLRAYGATVYITEIDPICALQAAMEGYRVVT 269

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E+  + DI VTATGN +++T EHM KMK+  +VCN+GH + EID+ SL+  D  W  +
Sbjct: 270 MDEMADSADIFVTATGNTDIITHEHMLKMKDQAIVCNIGHFDNEIDIASLQ--DYQWMNI 327

Query: 218 RSQVDHVIWPD 228
           + QVD VI+PD
Sbjct: 328 KPQVDQVIFPD 338

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|B6J6H1|SAHH_COXB1 Adenosylhomocysteinase OS=Coxiella burnetii (strain CbuK_Q154) GN=ahcY PE=3 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 101/131 (77%), Gaps = 2/131 (1%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           S+KR+TDVM  GK+VV+CGYG+VGKGC QSL+  G  +YITEIDPICALQA M+G+ VV 
Sbjct: 210 SIKRATDVMIAGKRVVVCGYGDVGKGCAQSLRAYGATVYITEIDPICALQAAMEGYRVVT 269

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E+  + DI VTATGN +++T EHM KMK+  +VCN+GH + EID+ SL+  D  W  +
Sbjct: 270 MDEMADSADIFVTATGNTDIITHEHMLKMKDQAIVCNIGHFDNEIDIASLQ--DYQWMNI 327

Query: 218 RSQVDHVIWPD 228
           + QVD VI+PD
Sbjct: 328 KPQVDQVIFPD 338

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q83A77|SAHH_COXBU Adenosylhomocysteinase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=ahcY PE=3 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 101/131 (77%), Gaps = 2/131 (1%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           S+KR+TDVM  GK+VV+CGYG+VGKGC QSL+  G  +YITEIDPICALQA M+G+ VV 
Sbjct: 210 SIKRATDVMIAGKRVVVCGYGDVGKGCAQSLRAYGATVYITEIDPICALQAAMEGYRVVT 269

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E+  + DI VTATGN +++T EHM KMK+  +VCN+GH + EID+ SL+  D  W  +
Sbjct: 270 MDEMADSADIFVTATGNTDIITHEHMLKMKDQAIVCNIGHFDNEIDIASLQ--DYQWMNI 327

Query: 218 RSQVDHVIWPD 228
           + QVD VI+PD
Sbjct: 328 KPQVDQVIFPD 338

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
242013664	549	adenosylhomocysteinase, putative [Pedicu	0.507	0.238	0.931	7e-70
307182708	564	Putative adenosylhomocysteinase 3 [Campo	0.507	0.232	0.923	4e-69
322789035	526	hypothetical protein SINV_08970 [Solenop	0.507	0.249	0.923	5e-69
110749750	532	PREDICTED: putative adenosylhomocysteina	0.507	0.246	0.916	6e-69
340709195	532	PREDICTED: putative adenosylhomocysteina	0.507	0.246	0.916	6e-69
332023183	539	Putative adenosylhomocysteinase 3 [Acrom	0.507	0.243	0.923	6e-69
307194517	540	Putative adenosylhomocysteinase 3 [Harpe	0.507	0.242	0.923	7e-69
383864821	528	PREDICTED: putative adenosylhomocysteina	0.507	0.248	0.916	8e-69
345486611	532	PREDICTED: putative adenosylhomocysteina	0.507	0.246	0.923	8e-69
340709197	516	PREDICTED: putative adenosylhomocysteina	0.507	0.253	0.916	8e-69

>gi|242013664|ref|XP_002427522.1| adenosylhomocysteinase, putative [Pediculus humanus corporis] gi|212511924|gb|EEB14784.1| adenosylhomocysteinase, putative [Pediculus humanus corporis]

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 122/131 (93%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTDVMFGGKQV +CGYGEVGKGCCQ+LKGLGCV+Y+TEIDPICALQACMDGF VVK
Sbjct: 319 SLKRSTDVMFGGKQVAVCGYGEVGKGCCQALKGLGCVVYVTEIDPICALQACMDGFRVVK 378

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIVVTATGNKN+VTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV
Sbjct: 379 LNEVIRNVDIVVTATGNKNIVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 438

Query: 218 RSQVDHVIWPD 228
           RSQVDH+IWPD
Sbjct: 439 RSQVDHIIWPD 449

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182708|gb|EFN69832.1| Putative adenosylhomocysteinase 3 [Camponotus floridanus]

 Score =  266 bits (681), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 121/131 (92%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTD+MFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+K
Sbjct: 324 SLKRSTDIMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMK 383

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV
Sbjct: 384 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 443

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 444 RSQVDHVIWPD 454

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789035|gb|EFZ14493.1| hypothetical protein SINV_08970 [Solenopsis invicta]

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 121/131 (92%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTD+MFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+K
Sbjct: 293 SLKRSTDIMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMK 352

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV
Sbjct: 353 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 412

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 413 RSQVDHVIWPD 423

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110749750|ref|XP_624152.2| PREDICTED: putative adenosylhomocysteinase 3-like [Apis mellifera] gi|380027184|ref|XP_003697310.1| PREDICTED: putative adenosylhomocysteinase 3-like [Apis florea]

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 120/131 (91%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTD+MFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+K
Sbjct: 302 SLKRSTDIMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMK 361

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKV
Sbjct: 362 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKV 421

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 422 RSQVDHVIWPD 432

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709195|ref|XP_003393197.1| PREDICTED: putative adenosylhomocysteinase 3-like isoform 1 [Bombus terrestris] gi|350425225|ref|XP_003494052.1| PREDICTED: putative adenosylhomocysteinase 3-like [Bombus impatiens]

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 120/131 (91%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTD+MFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+K
Sbjct: 302 SLKRSTDIMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMK 361

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKV
Sbjct: 362 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKV 421

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 422 RSQVDHVIWPD 432

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023183|gb|EGI63439.1| Putative adenosylhomocysteinase 3 [Acromyrmex echinatior]

 Score =  266 bits (680), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 121/131 (92%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTD+MFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+K
Sbjct: 298 SLKRSTDIMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMK 357

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV
Sbjct: 358 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 417

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 418 RSQVDHVIWPD 428

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194517|gb|EFN76809.1| Putative adenosylhomocysteinase 3 [Harpegnathos saltator]

 Score =  266 bits (680), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 121/131 (92%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTDVMFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+K
Sbjct: 298 SLKRSTDVMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMK 357

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKV
Sbjct: 358 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKV 417

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 418 RSQVDHVIWPD 428

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864821|ref|XP_003707876.1| PREDICTED: putative adenosylhomocysteinase 3-like [Megachile rotundata]

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 120/131 (91%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTD+MFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+K
Sbjct: 298 SLKRSTDIMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMK 357

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKV
Sbjct: 358 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKV 417

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 418 RSQVDHVIWPD 428

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486611|ref|XP_001605394.2| PREDICTED: putative adenosylhomocysteinase 3-like isoform 1 [Nasonia vitripennis]

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 121/131 (92%), Positives = 127/131 (96%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTDVMFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF VVK
Sbjct: 303 SLKRSTDVMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVVK 362

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRT DLTWEKV
Sbjct: 363 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTSDLTWEKV 422

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 423 RSQVDHVIWPD 433

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709197|ref|XP_003393198.1| PREDICTED: putative adenosylhomocysteinase 3-like isoform 2 [Bombus terrestris]

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 120/131 (91%), Positives = 128/131 (97%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
           SLKRSTD+MFGGKQVV+CGYGEVGKGCCQ+LKGLGC++YITEIDPICALQA MDGF V+K
Sbjct: 286 SLKRSTDIMFGGKQVVICGYGEVGKGCCQALKGLGCIVYITEIDPICALQASMDGFRVMK 345

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+TATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID+NSLRTPDLTWEKV
Sbjct: 346 LNEVIRNVDIVITATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDINSLRTPDLTWEKV 405

Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 406 RSQVDHVIWPD 416

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
FB|FBgn0035371	521	CG9977 [Drosophila melanogaste	0.507	0.251	0.877	2.3e-62
ZFIN|ZDB-GENE-040115-5	623	ahcyl2 "S-adenosylhomocysteine	0.503	0.208	0.815	2.6e-61
UNIPROTKB|F1P7I1	524	AHCYL1 "Adenosylhomocysteinase	0.503	0.248	0.846	5.5e-61
UNIPROTKB|A6QNP1	276	AHCYL1 "AHCYL1 protein" [Bos t	0.503	0.471	0.846	5.5e-61
UNIPROTKB|F1MWH2	530	AHCYL1 "Adenosylhomocysteinase	0.503	0.245	0.846	5.5e-61
UNIPROTKB|E2REN0	517	AHCYL1 "Adenosylhomocysteinase	0.503	0.251	0.846	5.5e-61
UNIPROTKB|O43865	530	AHCYL1 "Putative adenosylhomoc	0.503	0.245	0.846	5.5e-61
UNIPROTKB|F1S610	494	AHCYL1 "Adenosylhomocysteinase	0.503	0.263	0.846	5.5e-61
MGI|MGI:2385184	530	Ahcyl1 "S-adenosylhomocysteine	0.503	0.245	0.846	5.5e-61
RGD|1309768	529	Ahcyl1 "adenosylhomocysteinase	0.503	0.245	0.846	5.5e-61

FB|FBgn0035371 CG9977 [Drosophila melanogaster (taxid:7227)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 115/131 (87%), Positives = 124/131 (94%)

Query:    98 SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
             SLKRSTDVMFGGKQVV+CGYG+VGKGC Q+LKG GC++YITEIDPICALQA MDGF VVK
Sbjct:   291 SLKRSTDVMFGGKQVVVCGYGDVGKGCAQALKGQGCIVYITEIDPICALQASMDGFRVVK 350

Query:   158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
             LNEVIR VDIVVTATGNKNVV REHMDKMK+GC+VCNMGHSNTEIDVN LRTPDLTWEKV
Sbjct:   351 LNEVIRNVDIVVTATGNKNVVVREHMDKMKSGCIVCNMGHSNTEIDVNGLRTPDLTWEKV 410

Query:   218 RSQVDHVIWPD 228
             RSQVDH+IWP+
Sbjct:   411 RSQVDHIIWPE 421

GO:0004013 "adenosylhomocysteinase activity" evidence=ISS

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-040115-5 ahcyl2 "S-adenosylhomocysteine hydrolase-like 2" [Danio rerio (taxid:7955)]

 Score = 599 (215.9 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
 Identities = 106/130 (81%), Positives = 121/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGC  +LK +G ++Y+TEIDPICALQACMDGF +VKL
Sbjct:   394 LKRTTDVMFGGKQVVVCGYGEVGKGCSAALKAMGSIVYVTEIDPICALQACMDGFRLVKL 453

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             +EVIR VDIV+T TGNKNVV RE+MD+MKNGC+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   454 SEVIRQVDIVITCTGNKNVVVREYMDRMKNGCIVCNMGHSNTEIDVASLRTPELTWERVR 513

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   514 SQVDHVIWPD 523

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|F1P7I1 AHCYL1 "Adenosylhomocysteinase" [Canis lupus familiaris (taxid:9615)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct:   295 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 354

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   355 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 414

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   415 SQVDHVIWPD 424

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A6QNP1 AHCYL1 "AHCYL1 protein" [Bos taurus (taxid:9913)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct:    47 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 106

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   107 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 166

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   167 SQVDHVIWPD 176

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1MWH2 AHCYL1 "Adenosylhomocysteinase" [Bos taurus (taxid:9913)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct:   301 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 360

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   361 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 420

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   421 SQVDHVIWPD 430

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2REN0 AHCYL1 "Adenosylhomocysteinase" [Canis lupus familiaris (taxid:9615)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct:   288 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 347

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   348 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 407

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   408 SQVDHVIWPD 417

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|O43865 AHCYL1 "Putative adenosylhomocysteinase 2" [Homo sapiens (taxid:9606)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct:   301 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 360

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   361 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 420

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   421 SQVDHVIWPD 430

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IEA

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1S610 AHCYL1 "Adenosylhomocysteinase" [Sus scrofa (taxid:9823)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct:   265 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 324

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   325 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 384

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   385 SQVDHVIWPD 394

GO:0044070 "regulation of anion transport" evidence=IEA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IEA

GO:0006611 "protein export from nucleus" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:2385184 Ahcyl1 "S-adenosylhomocysteine hydrolase-like 1" [Mus musculus (taxid:10090)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct:   301 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 360

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   361 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 420

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   421 SQVDHVIWPD 430

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IDA

GO:0006611 "protein export from nucleus" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=IGI

GO:0016787 "hydrolase activity" evidence=IEA

GO:0031440 "regulation of mRNA 3'-end processing" evidence=IDA

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=IGI

GO:0044070 "regulation of anion transport" evidence=IGI

RGD|1309768 Ahcyl1 "adenosylhomocysteinase-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 110/130 (84%), Positives = 122/130 (93%)

Query:    99 LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
             LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct:   300 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 359

Query:   159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
             NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct:   360 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 419

Query:   219 SQVDHVIWPD 228
             SQVDHVIWPD
Sbjct:   420 SQVDHVIWPD 429

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=ISO

GO:0006611 "protein export from nucleus" evidence=ISO

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0010765 "positive regulation of sodium ion transport" evidence=ISO

GO:0031440 "regulation of mRNA 3'-end processing" evidence=ISO

GO:0032412 "regulation of ion transmembrane transporter activity" evidence=ISO

GO:0044070 "regulation of anion transport" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7NZF7	SAHH_CHRVO	3, ., 3, ., 1, ., 1	0.5725	0.5	0.2768	yes	N/A
Q3B0K7	SAHH_SYNS9	3, ., 3, ., 1, ., 1	0.5413	0.5077	0.2752	yes	N/A
B2T6X2	SAHH_BURPP	3, ., 3, ., 1, ., 1	0.5267	0.5	0.2727	yes	N/A
Q3A392	SAHH_PELCD	3, ., 3, ., 1, ., 1	0.5454	0.5077	0.2757	yes	N/A
Q80SW1	SAHH2_MOUSE	3, ., 3, ., 1, ., 1	0.8461	0.5038	0.2452	yes	N/A
Q13T36	SAHH_BURXL	3, ., 3, ., 1, ., 1	0.5267	0.5	0.2727	yes	N/A
A9KD88	SAHH_COXBN	3, ., 3, ., 1, ., 1	0.5801	0.5	0.2945	yes	N/A
Q3JY79	SAHH_BURP1	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
Q63PT2	SAHH_BURPS	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
A9BD69	SAHH_PROM4	3, ., 3, ., 1, ., 1	0.5530	0.5038	0.2731	yes	N/A
O43865	SAHH2_HUMAN	3, ., 3, ., 1, ., 1	0.8461	0.5038	0.2452	yes	N/A
A1V8Z2	SAHH_BURMS	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
Q82WL1	SAHH_NITEU	3, ., 3, ., 1, ., 1	0.5581	0.4922	0.2656	yes	N/A
Q7VUL8	SAHH_BORPE	3, ., 3, ., 1, ., 1	0.5496	0.5	0.2733	yes	N/A
A2S6W2	SAHH_BURM9	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
Q0IDX7	SAHH_SYNS3	3, ., 3, ., 1, ., 1	0.5338	0.5077	0.2752	yes	N/A
Q2YQX8	SAHH_BRUA2	3, ., 3, ., 1, ., 1	0.5352	0.5426	0.3004	yes	N/A
A5GI30	SAHH_SYNPW	3, ., 3, ., 1, ., 1	0.5488	0.5077	0.2752	yes	N/A
Q318B6	SAHH_PROM9	3, ., 3, ., 1, ., 1	0.5338	0.5077	0.2775	yes	N/A
B2S994	SAHH_BRUA1	3, ., 3, ., 1, ., 1	0.5352	0.5426	0.3004	yes	N/A
A3MQW7	SAHH_BURM7	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
P61617	SAHH_GEOSL	3, ., 3, ., 1, ., 1	0.5190	0.5	0.2715	yes	N/A
Q7UZN3	SAHH_PROMP	3, ., 3, ., 1, ., 1	0.5413	0.5077	0.2775	yes	N/A
A3PFB5	SAHH_PROM0	3, ., 3, ., 1, ., 1	0.5338	0.5077	0.2775	yes	N/A
A8G7D1	SAHH_PROM2	3, ., 3, ., 1, ., 1	0.5338	0.5077	0.2775	yes	N/A
Q83A77	SAHH_COXBU	3, ., 3, ., 1, ., 1	0.5801	0.5	0.2945	yes	N/A
Q60CG8	SAHH_METCA	3, ., 3, ., 1, ., 1	0.5496	0.5	0.2733	yes	N/A
Q3ANF4	SAHH_SYNSC	3, ., 3, ., 1, ., 1	0.5413	0.5077	0.2752	yes	N/A
Q57AG3	SAHH_BRUAB	3, ., 3, ., 1, ., 1	0.5352	0.5426	0.3004	yes	N/A
Q2STU0	SAHH_BURTA	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
A2C620	SAHH_PROM3	3, ., 3, ., 1, ., 1	0.5454	0.5038	0.2731	yes	N/A
B6J6H1	SAHH_COXB1	3, ., 3, ., 1, ., 1	0.5801	0.5	0.2945	yes	N/A
Q7U9Y3	SAHH_SYNPX	3, ., 3, ., 1, ., 1	0.5338	0.5077	0.2752	yes	N/A
B6J3R0	SAHH_COXB2	3, ., 3, ., 1, ., 1	0.5801	0.5	0.2945	yes	N/A
A3NER1	SAHH_BURP6	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
A9M9T1	SAHH_BRUC2	3, ., 3, ., 1, ., 1	0.5352	0.5426	0.3004	yes	N/A
B2JIP4	SAHH_BURP8	3, ., 3, ., 1, ., 1	0.5419	0.5	0.2727	yes	N/A
B0CJJ7	SAHH_BRUSI	3, ., 3, ., 1, ., 1	0.5352	0.5426	0.3004	yes	N/A
A1WXM7	SAHH_HALHL	3, ., 3, ., 1, ., 1	0.5496	0.5	0.3	yes	N/A
Q8YE49	SAHH_BRUME	3, ., 3, ., 1, ., 1	0.5352	0.5426	0.3004	yes	N/A
A3P0L8	SAHH_BURP0	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
Q62G22	SAHH_BURMA	3, ., 3, ., 1, ., 1	0.5343	0.5	0.2727	yes	N/A
C0RFY3	SAHH_BRUMB	3, ., 3, ., 1, ., 1	0.5352	0.5426	0.3004	yes	N/A
Q8FXZ7	SAHH_BRUSU	3, ., 3, ., 1, ., 1	0.5352	0.5426	0.3004	yes	N/A
Q7V926	SAHH_PROMM	3, ., 3, ., 1, ., 1	0.5454	0.5038	0.2731	yes	N/A
Q0AEV8	SAHH_NITEC	3, ., 3, ., 1, ., 1	0.5692	0.4961	0.2677	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.3.1	0.691
3rd Layer	3.3.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	258
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	1e-89
pfam00670	162	pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocystein	2e-80
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	2e-79
smart00997	162	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei	5e-79
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	6e-70
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	1e-62
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	1e-61
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	7e-55
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	5e-49
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	5e-49
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	4e-35
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	8e-30
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	7e-21
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	5e-20
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	1e-19
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	2e-17
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	9e-17
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	8e-14
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	2e-10
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-06
smart01002	149	smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT	4e-06
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	1e-05
pfam01262	150	pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT,	1e-05
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	6e-05
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	9e-05
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	1e-04
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	3e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-04
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	4e-04
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	4e-04
pfam02254	116	pfam02254, TrkA_N, TrkA-N domain	5e-04
PRK00045	423	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	5e-04
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	5e-04
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	0.001
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	0.002
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	0.002
cd05213	311	cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-bindi	0.004

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  271 bits (695), Expect = 1e-89
 Identities = 85/151 (56%), Positives = 103/151 (68%), Gaps = 13/151 (8%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+CGYG+VGKGC QSL+G G  + +TEIDPICALQA MDGF VV 
Sbjct: 196 GIKRATDVMIAGKVAVVCGYGDVGKGCAQSLRGQGARVIVTEIDPICALQAAMDGFEVVT 255

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEK 216
           + EV    DI VT TGNK+V+TREHM  MK+G +VCN+GH + EIDV SLR  P L WE 
Sbjct: 256 MEEVAPQADIFVTTTGNKDVITREHMRAMKDGAIVCNIGHFDNEIDVASLRNNPGLKWEN 315

Query: 217 VRSQVDHVIWPD------------VNLKNNT 235
           ++ QVDH+ +PD            VNL   T
Sbjct: 316 IKPQVDHITFPDGKRIILLAEGRLVNLGCAT 346

Length = 426

>gnl|CDD|109716 pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  238 bits (610), Expect = 2e-80
 Identities = 76/131 (58%), Positives = 93/131 (70%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+CGYG+VGKGC  SLKG G  + +TEIDPICALQA M+GF VV 
Sbjct: 12  GIKRATDVMIAGKVAVVCGYGDVGKGCAASLKGQGARVIVTEIDPICALQAAMEGFQVVT 71

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           L EV++  DI VT TGNK+++T EHM KMKN  +VCN+GH + EIDV  L T    WE +
Sbjct: 72  LEEVVKKADIFVTTTGNKDIITGEHMAKMKNDAIVCNIGHFDNEIDVAWLNTNGKKWENI 131

Query: 218 RSQVDHVIWPD 228
           + QVD    PD
Sbjct: 132 KPQVDRYTLPD 142

Length = 162

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  244 bits (626), Expect = 2e-79
 Identities = 66/131 (50%), Positives = 89/131 (67%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+T+V+  GK VV+ GYG VGKGC    +GLG  + +TE+DPICALQA MDGF V+ 
Sbjct: 184 GIKRATNVLIAGKVVVVAGYGWVGKGCAMRARGLGARVIVTEVDPICALQAAMDGFEVMP 243

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           + E  +  DI VTATGNK+V+  EH +KMK+G ++CN GH + EIDV +L    +   ++
Sbjct: 244 MEEAAKIGDIFVTATGNKDVIRGEHFEKMKDGAILCNAGHFDVEIDVAALEELAVEKREI 303

Query: 218 RSQVDHVIWPD 228
           R QVD    PD
Sbjct: 304 RPQVDEYTLPD 314

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  235 bits (601), Expect = 5e-79
 Identities = 66/131 (50%), Positives = 88/131 (67%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            + R+T+V+  GK VV+ GYG+VGKG    L+GLG  + +TEIDPI AL+A MDGF V+K
Sbjct: 12  GILRATNVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTEIDPIRALEAAMDGFEVMK 71

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           + E  +  DI VTATGNK+V+TREH   MK+G ++ N GH + EIDV +L    +   +V
Sbjct: 72  MEEAAKRADIFVTATGNKDVITREHFRAMKDGAILANAGHFDVEIDVAALEELAVEKREV 131

Query: 218 RSQVDHVIWPD 228
           R QVD    PD
Sbjct: 132 RPQVDEYTLPD 142

Length = 162

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  220 bits (564), Expect = 6e-70
 Identities = 68/131 (51%), Positives = 93/131 (70%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+T+V+  GK VV+ GYG+VGKGC Q L+GLG  + +TE+DPICALQA MDGF V+ 
Sbjct: 201 GIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMT 260

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           + E     DI VTATGNK+V+T EHM+ MK+G ++ N+GH + EIDV +L    + W ++
Sbjct: 261 MEEAAELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREI 320

Query: 218 RSQVDHVIWPD 228
           + QVD    PD
Sbjct: 321 KPQVDEYTLPD 331

Length = 425

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  202 bits (515), Expect = 1e-62
 Identities = 65/147 (44%), Positives = 93/147 (63%)

Query: 82  KYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID 141
           K +  N+ G  +     + R+T+V+  GK VV+ GYG VG+G    L+G+G  + +TE+D
Sbjct: 182 KSLFDNRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVD 241

Query: 142 PICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTE 201
           PI AL+A MDGF V+ + E  +T DI VTATGNK+V+ +EH +KMK+G ++ N GH + E
Sbjct: 242 PIRALEAAMDGFRVMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVE 301

Query: 202 IDVNSLRTPDLTWEKVRSQVDHVIWPD 228
           IDV  L    +   +VR QVD    PD
Sbjct: 302 IDVAGLEELAVEKREVRPQVDEYELPD 328

Length = 420

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score =  200 bits (511), Expect = 1e-61
 Identities = 74/151 (49%), Positives = 100/151 (66%), Gaps = 8/151 (5%)

Query: 99  LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
           + R+TDVM  GK VV+CGYG+VGKGC Q+L+G G  + +TEIDPICALQA M+G+ VV L
Sbjct: 244 IFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTL 303

Query: 159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKV 217
            +V+ T DI VTATGNK+++T EHM +MKN  +V N+GH + EI V  L   P +   ++
Sbjct: 304 EDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEI 363

Query: 218 RSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY 248
           + QVD   +PD       +I L    + RL 
Sbjct: 364 KPQVDRYTFPD----GKGIILL---AEGRLV 387

Length = 476

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  181 bits (462), Expect = 7e-55
 Identities = 59/132 (44%), Positives = 78/132 (59%), Gaps = 1/132 (0%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+CGYG+VGKGC  SL+G G  + +TEIDPICALQA M+G+ VV 
Sbjct: 199 GIKRATDVMIAGKVAVVCGYGDVGKGCAASLRGQGARVIVTEIDPICALQAAMEGYQVVT 258

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR-TPDLTWEK 216
           L EV++  DI VT TG  +++   H   MK   +VCN+GH + EIDV  L          
Sbjct: 259 LEEVVKDADIFVTTTGCVDIIVGRHFMNMKKDAIVCNIGHFDCEIDVGWLNYNAKKITNI 318

Query: 217 VRSQVDHVIWPD 228
                 + +   
Sbjct: 319 KPQVDRYTLPNG 330

Length = 430

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score =  167 bits (425), Expect = 5e-49
 Identities = 65/133 (48%), Positives = 90/133 (67%), Gaps = 1/133 (0%)

Query: 99  LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
           L R+TDVM  GK  V+CGYG+VGKGC  ++K  G  + +TEIDPICALQA M+G+ V+ L
Sbjct: 244 LMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTL 303

Query: 159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKV 217
            +V+   DI VT TGNK+++  +HM KMKN  +VCN+GH + EID+  L T P +    +
Sbjct: 304 EDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITI 363

Query: 218 RSQVDHVIWPDVN 230
           + Q D  ++PD  
Sbjct: 364 KPQTDRWVFPDTG 376

Length = 477

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  166 bits (421), Expect = 5e-49
 Identities = 62/151 (41%), Positives = 91/151 (60%)

Query: 78  DEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI 137
           D   K +  N+ G  + +   + R+T+++  GK VV+ GYG  GKG     +G+G  + +
Sbjct: 165 DAYTKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIV 224

Query: 138 TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH 197
           TE+DPI AL+A MDGF V+ + E  +  DI +TATGNK+V+  EH + MK+G +V N+GH
Sbjct: 225 TEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGH 284

Query: 198 SNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD 228
            + EIDV +L    +    VR QVD  I  D
Sbjct: 285 FDVEIDVKALEELAVEKVNVRPQVDEYILKD 315

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  129 bits (327), Expect = 4e-35
 Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           Q LA IELF  P G+YK+ VY+LPKK+DE VA LHL    A LT+L+ EQA Y+G+   G
Sbjct: 360 QVLAQIELFTKP-GKYKNGVYVLPKKLDEKVARLHLEKLGAKLTKLTKEQADYIGVPVEG 418

Query: 91  PFKPSYY 97
           PFKP +Y
Sbjct: 419 PFKPDHY 425

Length = 426

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  115 bits (289), Expect = 8e-30
 Identities = 34/68 (50%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 31  QALALIELFNAP-AGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
           Q LA IEL+     G+Y+  VY+LPK +DE VA LHL      LT+L+D+QA+Y+G+   
Sbjct: 362 QVLAQIELWTKRDTGKYEVGVYVLPKHLDEKVARLHLGKLGVKLTKLTDKQAEYIGVPVE 421

Query: 90  GPFKPSYY 97
           GPFKP +Y
Sbjct: 422 GPFKPDHY 429

Length = 430

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score = 90.2 bits (225), Expect = 7e-21
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN 87
           QALA IEL+     + +  VY+LPK++DE VA L L      L +L++EQA+Y+G  
Sbjct: 347 QALAQIELWKNR-DKLEPGVYVLPKELDEEVARLKLEALGIKLDKLTEEQAEYLGSW 402

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score = 88.6 bits (220), Expect = 5e-20
 Identities = 34/68 (50%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 31  QALALIELF-NAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
           Q LA IEL+ N   G+Y + VY LPK++DE VA LHL    A LT+L+D+QA+Y+G+   
Sbjct: 407 QVLAQIELWENRDTGKYPNGVYKLPKELDEKVARLHLKKLGAKLTKLTDKQAEYIGVPVD 466

Query: 90  GPFKPSYY 97
           GP+K  +Y
Sbjct: 467 GPYKSDHY 474

Length = 476

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score = 87.1 bits (217), Expect = 1e-19
 Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           QALA IELF    G+ +  VY+LPK++DE VA L L      L EL++EQA+Y+G+   G
Sbjct: 364 QALAQIELFTNR-GKLEPGVYVLPKELDEEVARLKLKALGVKLDELTEEQAEYIGVWVEG 422

Query: 91  PFK 93
           PFK
Sbjct: 423 PFK 425

Length = 425

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 79.6 bits (196), Expect = 2e-17
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRT 164
              GK VV+ G G VGK   Q L+GLG  + IT+I+     Q    G   V +L E +  
Sbjct: 157 DVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAE 216

Query: 165 VDIVVTATGNKN-----VVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTP 210
            D++VT T         +V  E +++MK G V+ N+               
Sbjct: 217 ADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQL 267

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score = 78.8 bits (194), Expect = 9e-17
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 31  QALALIELFNAPA-GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
           Q +A +EL+N    G+Y+  VY+LPK +DE VA+LHL    A LT+LS +QA Y+ +   
Sbjct: 408 QVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYINVPVE 467

Query: 90  GPFKPSYY 97
           GP+KP++Y
Sbjct: 468 GPYKPAHY 475

Length = 477

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score = 70.0 bits (172), Expect = 8e-14
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           QALA I L     G+ +  VY LPK++DE VA L L      L EL++EQA+Y+G  + G
Sbjct: 361 QALAQIYLV-KNHGKLEPGVYRLPKELDEEVARLKLEAMGIELDELTEEQAEYLGSWEEG 419

Query: 91  P 91
            
Sbjct: 420 T 420

Length = 420

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           QALA   L+     + +  VY LPK++DE VA L L      + EL++EQ +Y+G  + G
Sbjct: 348 QALAAEYLWKNH-DKLEPGVYRLPKELDEMVARLKLEAMGIEIDELTEEQKEYLGSWEEG 406

Query: 91  P 91
            
Sbjct: 407 T 407

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 8/93 (8%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 167
           GK V + G G +G+   + LK  G  VI     D     +A   G   V L+E++   D+
Sbjct: 35  GKTVGIIGLGRIGRAVARRLKAFGMKVIA---YDRYPKAEAEALGARYVSLDELLAESDV 91

Query: 168 VVTAT----GNKNVVTREHMDKMKNGCVVCNMG 196
           V          ++++  E +  MK G ++ N  
Sbjct: 92  VSLHLPLTPETRHLINAERLALMKPGAILINTA 124

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|214966 smart01002, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 13/95 (13%)

Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDG-FSVVKLN-----EVIR 163
           VV+ G G VG G   + KGLG  + + ++ P  +  L++ +   F+ +        E ++
Sbjct: 23  VVVIGAGVVGLGAAATAKGLGAEVTVLDVRPARLRQLESLLGARFTTLYSQAELLEEAVK 82

Query: 164 TVDIVVTA---TGNK--NVVTREHMDKMKNGCVVC 193
             D+V+ A    G K   +VTRE +  MK G V+ 
Sbjct: 83  EADLVIGAVLIPGAKAPKLVTREMVKSMKPGSVIV 117

Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Length = 149

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 14/115 (12%)

Query: 88  KAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPIC- 144
           K G ++  YY+       +  GK V + G+G +G+   + LK  G   ++Y    DP   
Sbjct: 127 KDGEWRKDYYNYDGYGPEL-RGKTVGIVGFGAIGRRVAKRLKAFGAEVLVY----DPYVD 181

Query: 145 ALQACMDGFSVVKLNEVIRTVDIV-----VTATGNKNVVTREHMDKMKNGCVVCN 194
             +   DG   V L E+++  D+V     +T    + ++  E    MK      N
Sbjct: 182 PEKIEADGVKKVSLEELLKRSDVVSLHARLTP-ETRGMIGAEEFALMKPTAYFIN 235

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|216396 pfam01262, AlaDh_PNT_C, Alanine dehydrogenase/PNT, C-terminal domain

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 17/105 (16%)

Query: 106 MFGGKQ---VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDGFSVVK--- 157
             GG     VV+ G G VG G   + KGLG  + I ++ P  +  L +    F       
Sbjct: 14  GAGGVPPAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQLDSLFAEFVETDIFS 73

Query: 158 ----LNEVIRTVDIVVTA---TGNK--NVVTREHMDKMKNGCVVC 193
               L E I   D+V+      G +   +VTRE +  MK G V+ 
Sbjct: 74  NCEYLAEAIAEADLVIGTVLIPGARAPKLVTREMVKTMKPGSVIV 118

This family now also contains the lysine 2-oxoglutarate reductases. Length = 150

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC--MDGFSVVKLNEVIRTV 165
           GK V + G G +G+   + LK  G  VI     DP    +         V  L+E++   
Sbjct: 142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIG---YDPYSPRERAGVDGVVGVDSLDELLAEA 198

Query: 166 DIVVTAT----GNKNVVTREHMDKMKNGCVVCN 194
           DI+          + ++  E + KMK G ++ N
Sbjct: 199 DILTLHLPLTPETRGLINAEELAKMKPGAILIN 231

Length = 324

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIY--ITEIDPICALQACMDGFSVVKLNEVIRTV 165
           GK V + G G +G+   + L+  G  V+Y   T             GF VV L+E++   
Sbjct: 140 GKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEEDL----GFRVVSLDELLAQS 195

Query: 166 DIVVTATG----NKNVVTREHMDKMKNGCVVCN 194
           D+VV         ++++  E +  MK G V+ N
Sbjct: 196 DVVVLHLPLTPETRHLINEEELALMKPGAVLVN 228

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 8/104 (7%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDI 167
           GK + + G+G +G+   +  + LG  VI   +  P         G   V L E+++  D 
Sbjct: 139 GKTLGIIGFGRIGREVAKIARALGMNVIA-YDPYPKDEQAV-ELGVKTVSLEELLKNSDF 196

Query: 168 V---VTATG-NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL 207
           +   V  T   K+++ ++ ++ MK+G ++ N       ID  +L
Sbjct: 197 ISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGV-IDEEAL 239

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 8/94 (8%)

Query: 107 FGGKQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDP-ICALQACMDGFSVVKLNEVIRT 164
             GK V + GYG +G    + LK G    +     DP +        G   V L E++  
Sbjct: 145 LSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAY--DPYVSEEVIKKKGAKPVSLEELLAE 202

Query: 165 VDIVV----TATGNKNVVTREHMDKMKNGCVVCN 194
            DI+           +++  +   KMK G ++ N
Sbjct: 203 SDIISLHAPLTEETYHMINEKAFSKMKKGVILVN 236

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 168
           GK V++ G G++G+   +  K  G  +         A     + ++  +L+E++   D V
Sbjct: 134 GKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEVYTPDELDELLPEADYV 193

Query: 169 VTA------TGNKNVVTREHMDKMKNGCVVCNMG 196
           V A      T  + +   E    MK G V+ N+G
Sbjct: 194 VNALPLTPET--RGLFNAERFAAMKPGAVLINVG 225

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 88  KAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ 147
           + G +         S ++   GK V + GYG +G+   + LK  G  +      P     
Sbjct: 118 RRGIWHGRAGEEPESKEL--RGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEG 175

Query: 148 ACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMG 196
           A   G  +  L+E +   D+VV A       + ++    +  MK G ++ N+G
Sbjct: 176 ADFVGT-LSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVG 227

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 4/92 (4%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIV 168
           GK V + G G +G+   + L G G  +   +  P+   +        V+L+E++ + D +
Sbjct: 144 GKTVGILGMGALGRAIARRLSGFGATLLYYDPHPLDQAEEQALNLRRVELDELLESSDFL 203

Query: 169 VTAT----GNKNVVTREHMDKMKNGCVVCNMG 196
           V A        +++  E + KMK G ++ N  
Sbjct: 204 VLALPLTPDTLHLINAEALAKMKPGALLVNPC 235

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 9/72 (12%)

Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN----EV-----I 162
           +++ GYG VG+   + L+  G  + + + DP    +   +G  VV  +    EV     I
Sbjct: 1   IIIIGYGRVGRSLAEELREGGPDVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGI 60

Query: 163 RTVDIVVTATGN 174
              D VV ATG+
Sbjct: 61  EEADAVVAATGD 72

This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Length = 116

>gnl|CDD|234592 PRK00045, hemA, glutamyl-tRNA reductase; Reviewed

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYIT----EIDPICALQACMDGFSVVKLNEV 161
             GK+V++ G GE+G+   + L   G   I +     E     A +   +   + +L E 
Sbjct: 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEA 239

Query: 162 IRTVDIVVTATGNKN-VVTREHMDK 185
           +   DIV+++TG  + ++ +  +++
Sbjct: 240 LAEADIVISSTGAPHPIIGKGMVER 264

Length = 423

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 16/104 (15%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT------EIDPICALQACMDGFSVVK----- 157
           GK V + GYG +G    + L+  G  +  T      E +    +        V +     
Sbjct: 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHE 218

Query: 158 -LNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMG 196
            + E     DIVV           +V  E +  MK G ++ N+ 
Sbjct: 219 DIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262

Length = 347

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 97  YSLKRSTDVMFG----GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG 152
           +SL    D + G    GK + + G G +G+   + LKG G  +   +  P    +    G
Sbjct: 130 WSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEK-ELG 188

Query: 153 FSVVKLNEVIRTVDIVV-----TATGNKNVVTREHMDKMKNGCVVCNMG 196
              V L+E++   DI+      T    ++++  E + KMK G ++ N  
Sbjct: 189 ARYVDLDELLAESDIISLHCPLTPE-TRHLINAEELAKMKPGAILVNTA 236

Length = 324

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 6/93 (6%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVI--YITEIDPICALQACMDGFSVVKLNEVIRTVD 166
           GK + + G G +G+    +   LG  +  Y   +    A +  ++   V  L E++ T D
Sbjct: 135 GKTLGVIGLGNIGRLVANAALALGMKVIGYDPYLSVEAAWKLSVEVQRVTSLEELLATAD 194

Query: 167 IV---VTAT-GNKNVVTREHMDKMKNGCVVCNM 195
            +   V  T   + ++  E + KMK G ++ N 
Sbjct: 195 YITLHVPLTDETRGLINAELLAKMKPGAILLNF 227

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 18/103 (17%)

Query: 105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYIT-----EIDPICALQACMDGFSVVKL 158
               GK V + G G +G+   + L+G G  VIY       E +          G   V+L
Sbjct: 138 RELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEAEEKDL------GVRYVEL 191

Query: 159 NEVIRTVDIVV-----TATGNKNVVTREHMDKMKNGCVVCNMG 196
           +E++   D+V      T    ++++  E +  MK G ++ N  
Sbjct: 192 DELLAESDVVSLHVPLTPE-TRHLIGAEELAAMKPGAILINTA 233

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of glutamyl-tRNA reductase

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQ-ACMDGFSVVKLNEV--- 161
             GK+V++ G GE+G+   + L   G   I I       A + A   G + V L+E+   
Sbjct: 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLEL 235

Query: 162 IRTVDIVVTATG 173
           +   D+V++ATG
Sbjct: 236 LNEADVVISATG 247

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.95
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.95
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.94
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.93
PRK06932	314	glycerate dehydrogenase; Provisional	99.93
PRK06487	317	glycerate dehydrogenase; Provisional	99.92
PRK13243	333	glyoxylate reductase; Reviewed	99.92
PLN03139	386	formate dehydrogenase; Provisional	99.91
PLN02306	386	hydroxypyruvate reductase	99.91
PRK07574	385	formate dehydrogenase; Provisional	99.91
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.91
KOG0068|consensus	406		99.9
PLN02928	347	oxidoreductase family protein	99.9
KOG0069|consensus	336		99.9
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.9
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.89
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.89
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.89
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.89
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.87
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.86
PRK06436	303	glycerate dehydrogenase; Provisional	99.86
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.86
PRK12480	330	D-lactate dehydrogenase; Provisional	99.86
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.86
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	99.85
PLN02494	477	adenosylhomocysteinase	99.84
PRK08605	332	D-lactate dehydrogenase; Validated	99.84
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.82
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.81
KOG1370|consensus	434		99.79
KOG0024|consensus	354		99.72
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.48
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.47
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.45
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.45
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.42
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.42
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.42
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.41
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.41
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.4
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	99.39
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.39
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	99.39
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.38
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.38
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.38
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.37
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.37
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.36
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.36
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.35
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.35
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.35
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.35
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.34
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.34
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.34
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.33
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.33
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.32
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.32
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.32
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.32
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.32
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	99.31
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	99.31
KOG0067|consensus	435		99.3
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.29
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.27
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.27
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.24
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.24
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.17
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.14
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.13
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	99.13
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.1
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.06
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.05
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.03
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	99.02
PLN02827	378	Alcohol dehydrogenase-like	99.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	99.0
PLN02740	381	Alcohol dehydrogenase-like	98.98
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	98.98
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.96
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.96
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	98.96
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	98.95
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	98.95
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.95
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	98.94
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.94
PLN02178	375	cinnamyl-alcohol dehydrogenase	98.94
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.93
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.93
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	98.92
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.88
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	98.88
PLN02586	360	probable cinnamyl alcohol dehydrogenase	98.86
KOG1370|consensus	434		98.85
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.85
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	98.85
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	98.82
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	98.82
KOG0022|consensus	375		98.81
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.81
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	98.81
PLN02712	667	arogenate dehydrogenase	98.77
KOG0023|consensus	360		98.75
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	98.75
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	98.75
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	98.73
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.72
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.72
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	98.72
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.71
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.71
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.71
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.7
PLN02514	357	cinnamyl-alcohol dehydrogenase	98.7
PLN02494	477	adenosylhomocysteinase	98.69
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.68
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.67
PRK07417	279	arogenate dehydrogenase; Reviewed	98.66
PLN00203	519	glutamyl-tRNA reductase	98.65
PRK05225	487	ketol-acid reductoisomerase; Validated	98.65
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.64
PLN02256	304	arogenate dehydrogenase	98.64
PRK10083	339	putative oxidoreductase; Provisional	98.63
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.61
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.6
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.59
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	98.59
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.59
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.58
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.58
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	98.58
PRK08507	275	prephenate dehydrogenase; Validated	98.55
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.55
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.55
PLN02858	1378	fructose-bisphosphate aldolase	98.54
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.53
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.53
PRK06545	359	prephenate dehydrogenase; Validated	98.53
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.52
PRK08655	437	prephenate dehydrogenase; Provisional	98.51
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.51
PLN02712	667	arogenate dehydrogenase	98.5
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.5
KOG4230|consensus	935		98.49
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.48
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	98.48
PLN02858	1378	fructose-bisphosphate aldolase	98.48
KOG0409|consensus	327		98.47
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.47
PLN02688	266	pyrroline-5-carboxylate reductase	98.45
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.45
PRK08818	370	prephenate dehydrogenase; Provisional	98.45
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.44
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.44
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.43
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	98.42
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.42
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	98.4
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	98.38
PRK14982	340	acyl-ACP reductase; Provisional	98.38
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.38
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.36
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.35
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.34
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.31
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.3
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.3
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.3
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.3
PRK07340	304	ornithine cyclodeaminase; Validated	98.29
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	98.29
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.29
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.28
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	98.27
KOG0089|consensus	309		98.27
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	98.26
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.26
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.26
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.25
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.25
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.25
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	98.25
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	98.24
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.24
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.24
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.22
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	98.22
PRK08618	325	ornithine cyclodeaminase; Validated	98.22
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.21
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.2
PRK06141	314	ornithine cyclodeaminase; Validated	98.19
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.19
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.18
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	98.18
PLN02702	364	L-idonate 5-dehydrogenase	98.18
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.18
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	98.17
PRK07680	273	late competence protein ComER; Validated	98.17
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.16
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	98.15
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.14
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.14
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.13
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	98.13
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.1
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	98.1
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	98.09
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.08
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	98.07
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	98.06
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	98.06
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	98.03
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	98.03
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	98.03
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.02
KOG2380|consensus	480		98.0
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.0
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.99
PRK06823	315	ornithine cyclodeaminase; Validated	97.98
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	97.97
PRK06046	326	alanine dehydrogenase; Validated	97.96
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	97.96
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.95
PRK06407	301	ornithine cyclodeaminase; Provisional	97.94
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.93
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.93
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	97.92
PF05221	268	AdoHcyase: S-adenosyl-L-homocysteine hydrolase; In	97.92
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.91
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	97.91
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	97.91
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.89
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.88
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.88
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.88
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.87
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.87
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	97.86
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.86
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.84
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	97.84
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	97.83
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.82
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.81
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.81
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	97.8
PRK08291	330	ectoine utilization protein EutC; Validated	97.8
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.79
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	97.78
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	97.78
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	97.78
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.77
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.77
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	97.77
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	97.77
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.77
PRK07589	346	ornithine cyclodeaminase; Validated	97.76
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	97.76
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	97.76
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	97.75
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	97.74
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	97.74
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.73
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.73
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.73
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.73
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.72
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.72
PRK14030	445	glutamate dehydrogenase; Provisional	97.71
PLN02477	410	glutamate dehydrogenase	97.7
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.69
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	97.69
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	97.68
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	97.68
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.68
PRK14031	444	glutamate dehydrogenase; Provisional	97.68
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	97.65
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	97.65
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.65
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	97.63
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.62
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.62
PRK09414	445	glutamate dehydrogenase; Provisional	97.62
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	97.62
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.58
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.57
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	97.57
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	97.56
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.56
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.55
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	97.54
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.54
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	97.53
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	97.51
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.49
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	97.48
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	97.47
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.47
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	97.46
PRK13771	334	putative alcohol dehydrogenase; Provisional	97.46
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	97.45
PRK06199	379	ornithine cyclodeaminase; Validated	97.45
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.44
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	97.43
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.41
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.41
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.41
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.39
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	97.38
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	97.37
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.36
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.36
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.36
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.36
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	97.34
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	97.32
PTZ00117	319	malate dehydrogenase; Provisional	97.3
cd08252	336	AL_MDR Arginate lyase and other MDR family members	97.3
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.29
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.28
KOG1197|consensus	336		97.28
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	97.28
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	97.27
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	97.26
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.25
PRK12861	764	malic enzyme; Reviewed	97.25
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.25
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	97.23
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.22
PRK04148	134	hypothetical protein; Provisional	97.22
PRK12862	763	malic enzyme; Reviewed	97.22
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.21
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	97.21
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.21
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.2
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.18
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.17
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.17
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	97.15
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.14
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.14
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.13
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.11
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	97.1
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.1
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.09
COG0281	432	SfcA Malic enzyme [Energy production and conversio	97.09
PRK06223	307	malate dehydrogenase; Reviewed	97.09
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	97.09
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	97.08
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	97.08
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.07
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.07
PRK10637	457	cysG siroheme synthase; Provisional	97.07
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.07
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.05
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.04
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	97.04
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.04
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.02
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.02
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	97.02
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.02
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.01
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	97.01
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	97.0
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.99
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.98
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	96.98
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.97
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.97
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.96
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	96.95
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	96.94
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.92
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.91
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	96.91
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	96.91
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.9
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.89
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	96.88
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	96.87
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.85
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.85
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.85
PRK09496	453	trkA potassium transporter peripheral membrane com	96.84
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.84
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.84
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.83
PTZ00354	334	alcohol dehydrogenase; Provisional	96.83
PRK08324	681	short chain dehydrogenase; Validated	96.83
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.82
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	96.82
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.81
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	96.8
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	96.79
PRK10669	558	putative cation:proton antiport protein; Provision	96.78
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.77
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	96.77
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	96.77
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.76
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.73
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.73
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.7
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	96.69
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.68
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.66
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.65
COG5322	351	Predicted dehydrogenase [General function predicti	96.65
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	96.64
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.63
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	96.62
PRK06444	197	prephenate dehydrogenase; Provisional	96.62
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.61
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	96.61
KOG1198|consensus	347		96.6
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.57
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.57
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.54
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.53
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	96.53
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	96.52
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.52
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.52
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	96.51
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	96.5
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.5
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.5
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.5
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.49
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.49
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.47
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.45
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.44
PRK08265	261	short chain dehydrogenase; Provisional	96.43
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.43
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	96.42
PRK13529	563	malate dehydrogenase; Provisional	96.4
PRK08223	287	hypothetical protein; Validated	96.39
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.38
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.38
PRK05086	312	malate dehydrogenase; Provisional	96.37
KOG2304|consensus	298		96.32
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.31
PLN02602	350	lactate dehydrogenase	96.3
KOG0399|consensus	2142		96.3
COG2130	340	Putative NADP-dependent oxidoreductases [General f	96.28
PRK11579	346	putative oxidoreductase; Provisional	96.28
PRK09496	453	trkA potassium transporter peripheral membrane com	96.28
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.28
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.27
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.26
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.26
PLN02527	306	aspartate carbamoyltransferase	96.21
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	96.21
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	96.19
PLN02342	348	ornithine carbamoyltransferase	96.18
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.18
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.18
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.16
PLN03129	581	NADP-dependent malic enzyme; Provisional	96.12
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	96.11
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.06
PRK07806	248	short chain dehydrogenase; Provisional	96.05
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.05
PTZ00317	559	NADP-dependent malic enzyme; Provisional	96.02
PLN03209	576	translocon at the inner envelope of chloroplast su	95.98
CHL00194	317	ycf39 Ycf39; Provisional	95.98
PRK06182	273	short chain dehydrogenase; Validated	95.96
PRK05993	277	short chain dehydrogenase; Provisional	95.96
PRK05693	274	short chain dehydrogenase; Provisional	95.93
PRK02255	338	putrescine carbamoyltransferase; Provisional	95.91
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.9
PRK12742	237	oxidoreductase; Provisional	95.9
PRK00779	304	ornithine carbamoyltransferase; Provisional	95.9
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	95.87
PRK01713	334	ornithine carbamoyltransferase; Provisional	95.83
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	95.81
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	95.81
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.79
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.78
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	95.78
PRK05866	293	short chain dehydrogenase; Provisional	95.77
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	95.77
PRK07326	237	short chain dehydrogenase; Provisional	95.76
PTZ00325	321	malate dehydrogenase; Provisional	95.75
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.75
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.75
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.74
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.73

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.95  E-value=3e-28  Score=219.47  Aligned_cols=199  Identities=18%  Similarity=0.229  Sum_probs=155.1

Q ss_pred             CCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115         44 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG  123 (258)
Q Consensus        44 ~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~  123 (258)
                      .+.++.|+++|++.+++||++++.+++...|++.+...    ..+.|.|.... ......+.++.|||+||+|+|+||+.
T Consensus        86 ~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~----~~r~g~w~~~~-~~~~~~~~~l~gktvGIiG~GrIG~a  160 (324)
T COG1052          86 KERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDR----RVREGNWSLSG-GPDPLLGFDLRGKTLGIIGLGRIGQA  160 (324)
T ss_pred             HHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHH----HHhcCcccccC-CcccccccCCCCCEEEEECCCHHHHH
Confidence            34589999999999999999999999999999876443    24556664432 11122356789999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      +|+++++|||+|++||+++. .+...+.++.+.++++++++||+|++|    ..|.++|+++.|++||+|+++||+||| 
T Consensus       161 vA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~  239 (324)
T COG1052         161 VARRLKGFGMKVLYYDRSPN-PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGG  239 (324)
T ss_pred             HHHHHhcCCCEEEEECCCCC-hHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCcc
Confidence            99999999999999999886 334445567888899999999999997    378899999999999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeeccCcceee-cCCCcc--CCCceeEEecCCChhHHHH
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVRSQVDHVI-WPDVNL--KNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~-~~~~~l--~~~~~~~l~~~~~~~~~~~  250 (258)
                        |+++++++|++|+|...++..+..+-. ....++  .+.+.+  +-.||.++++.
T Consensus       240 ~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~v--vltPHia~at~  294 (324)
T COG1052         240 LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNV--VLTPHIASATE  294 (324)
T ss_pred             ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCE--EEccccccccH
Confidence              999999999999998877755443311 122222  221112  22688887764

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.95  E-value=2e-27  Score=214.25  Aligned_cols=191  Identities=20%  Similarity=0.255  Sum_probs=150.6

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|.|.|+.++..+||+++..++...|++......    .+.|.|..     ....+.++.||||||||+|.||+.+|+
T Consensus        89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~----~~~g~W~~-----~~~~g~el~gkTvGIiG~G~IG~~va~  159 (324)
T COG0111          89 GILVVNAPGGNAISVAELVLALLLALARRIPDADAS----QRRGEWDR-----KAFRGTELAGKTVGIIGLGRIGRAVAK  159 (324)
T ss_pred             CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHH----HHcCCccc-----cccccccccCCEEEEECCCHHHHHHHH
Confidence            899999999999999999999999999998865432    36677764     222356789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCC-cccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      ++++|||+|++||+...+.. +...+. ...++++++++||+|++|    ..|.++++++.|++||+|+++||+|||   
T Consensus       160 ~l~afgm~v~~~d~~~~~~~-~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vV  238 (324)
T COG0111         160 RLKAFGMKVIGYDPYSPRER-AGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV  238 (324)
T ss_pred             HHHhCCCeEEEECCCCchhh-hccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCccee
Confidence            99999999999999554432 222333 456799999999999998    379999999999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccCcceeecCC-CccCCCceeEEecCCChhHHHH
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-VNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                      |+++++++|++|+|....+.-+..+ +++. +.+-....+  +-+||.+....
T Consensus       239 de~aL~~AL~~G~i~gA~lDVf~~E-Pl~~~~pL~~~pnV--~~TPHia~~T~  288 (324)
T COG0111         239 DEDALLAALDSGKIAGAALDVFEEE-PLPADSPLWDLPNV--ILTPHIGGSTD  288 (324)
T ss_pred             cHHHHHHHHHcCCcceEEecCCCCC-CCCCCChhhcCCCe--EECCcccccCH
Confidence            9999999999999987776444433 3333 244444443  23577765443

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.94  E-value=1.9e-26  Score=207.48  Aligned_cols=194  Identities=17%  Similarity=0.195  Sum_probs=145.9

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchh-hhccCcCcccCCCEEEEEcCchHHHH
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY-SLKRSTDVMFGGKQVVLCGYGEVGKG  123 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~l~g~~V~IiG~G~IG~~  123 (258)
                      +.++.|++.|++.+.++||+++.+++...|++......    .+.|.|..... ......+.++.|+||||+|+|.||+.
T Consensus        84 ~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~----~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~  159 (311)
T PRK08410         84 KKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY----VKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR  159 (311)
T ss_pred             hCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHH----HHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence            34899999999999999999999999888888654332    24455642110 00000134689999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      +|+++++|||+|++||++....    ..++...++++++++||+|++|    ..|.++|+++.|++||+|+++||+||| 
T Consensus       160 vA~~~~~fgm~V~~~d~~~~~~----~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~  235 (311)
T PRK08410        160 VAKIAQAFGAKVVYYSTSGKNK----NEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG  235 (311)
T ss_pred             HHHHHhhcCCEEEEECCCcccc----ccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCcc
Confidence            9999999999999999864321    2355677999999999999998    378899999999999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeeccCcceeecC-CCccCCC---ceeEEecCCChhHHHH
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVRSQVDHVIWP-DVNLKNN---TVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~l~~~---~~~~l~~~~~~~~~~~  250 (258)
                        |+++++++|++|+|. .++..+..+ +++ .+++-+-   ..  .+-+||.+.++.
T Consensus       236 vVDe~AL~~AL~~g~i~-AaLDV~~~E-P~~~~~pL~~~~~~~N--vilTPH~a~~t~  289 (311)
T PRK08410        236 IVNEKDLAKALDEKDIY-AGLDVLEKE-PMEKNHPLLSIKNKEK--LLITPHIAWASK  289 (311)
T ss_pred             ccCHHHHHHHHHcCCeE-EEEecCCCC-CCCCCChhhccCCCCC--EEECCccccCCH
Confidence              999999999999998 766443322 222 2222211   11  233789876543

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.93  E-value=7.2e-26  Score=204.57  Aligned_cols=196  Identities=15%  Similarity=0.127  Sum_probs=148.4

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC  124 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~  124 (258)
                      ++++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|......  ...+.++.|+|+||+|+|.||+.+
T Consensus        87 ~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~----~~~~g~w~~~~~~--~~~g~~L~gktvGIiG~G~IG~~v  160 (323)
T PRK15409         87 ARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAE----RVKAGEWTASIGP--DWFGTDVHHKTLGIVGMGRIGMAL  160 (323)
T ss_pred             HCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHH----HHHcCCCcccCcc--ccccCCCCCCEEEEEcccHHHHHH
Confidence            3489999999999999999999999999998865432    2345666422100  112457899999999999999999


Q ss_pred             HHHHH-hCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        125 CQSLK-GLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       125 a~~l~-~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      |++++ +|||+|+++|+..... .....+....++++++++||+|++|    ..|.++++++.|++||+|+++||+||| 
T Consensus       161 a~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~  239 (323)
T PRK15409        161 AQRAHFGFNMPILYNARRHHKE-AEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP  239 (323)
T ss_pred             HHHHHhcCCCEEEEECCCCchh-hHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence            99998 9999999999875322 2234566777999999999999997    378899999999999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                        |+++++++|++|+|...++..+..+-..+.+.+-+...+  +-+||.+.++
T Consensus       240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nv--ilTPHia~~t  290 (323)
T PRK15409        240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNV--VAVPHIGSAT  290 (323)
T ss_pred             ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCE--EEcCcCCCCc
Confidence              999999999999997766643332211123334333333  2367776543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.93  E-value=2.2e-25  Score=200.85  Aligned_cols=165  Identities=15%  Similarity=0.113  Sum_probs=131.5

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchh-hhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY-SLKRSTDVMFGGKQVVLCGYGEVGKGC  124 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~l~g~~V~IiG~G~IG~~~  124 (258)
                      .++.|++.|++.+.++||+++.+++...|++......    .+.|.|..... ......+.++.|+||||+|+|.||+.+
T Consensus        87 ~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~----~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~v  162 (314)
T PRK06932         87 LGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRD----QLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEV  162 (314)
T ss_pred             CCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHH----HHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHH
Confidence            3889999999999999999999998888887654332    23455642110 000011346899999999999999999


Q ss_pred             HHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        125 CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       125 a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      |+++++|||+|+++|+.+...     ......++++++++||+|++|    ..|.++++++.|++||+|+++||+|||  
T Consensus       163 a~~l~~fg~~V~~~~~~~~~~-----~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~  237 (314)
T PRK06932        163 GRLAQALGMKVLYAEHKGASV-----CREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPL  237 (314)
T ss_pred             HHHHhcCCCEEEEECCCcccc-----cccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccc
Confidence            999999999999998754211     112356899999999999998    368899999999999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeecc
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~~  219 (258)
                       |+++++++|++|+|...++..
T Consensus       238 Vde~AL~~aL~~g~i~gAaLDV  259 (314)
T PRK06932        238 VDEQALLDALENGKIAGAALDV  259 (314)
T ss_pred             cCHHHHHHHHHcCCccEEEEec
Confidence             999999999999997666543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.92  E-value=2.9e-25  Score=200.30  Aligned_cols=190  Identities=19%  Similarity=0.167  Sum_probs=144.3

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchh-hhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYY-SLKRSTDVMFGGKQVVLCGYGEVGKGC  124 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~l~g~~V~IiG~G~IG~~~  124 (258)
                      .++.|++.|++.+.++||+++.+++...|++.....    ..+.|.|..... ......+.++.|+||||+|+|.||+.+
T Consensus        88 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~v  163 (317)
T PRK06487         88 RGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQ----AVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAV  163 (317)
T ss_pred             CCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHH----HHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHH
Confidence            489999999999999999999999999998865433    234455642210 000112346899999999999999999


Q ss_pred             HHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        125 CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       125 a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      |+++++|||+|++||+....      ......++++++++||+|++|    ..|.++++++.|++||+|+++||+|||  
T Consensus       164 A~~l~~fgm~V~~~~~~~~~------~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~v  237 (317)
T PRK06487        164 ARLAEAFGMRVLIGQLPGRP------ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGL  237 (317)
T ss_pred             HHHHhhCCCEEEEECCCCCc------ccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccc
Confidence            99999999999999976421      123456899999999999998    378899999999999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeeccCcceeecCC-CccC----CCceeEEecCCChhHHHH
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-VNLK----NNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~-~~l~----~~~~~~l~~~~~~~~~~~  250 (258)
                       |+++++++|++|+|...++..+..+ +++. +.+-    ++-++    +||.+.++.
T Consensus       238 Vde~AL~~AL~~g~i~gAaLDVf~~E-P~~~~~pl~~~~~pnvil----TPHia~~t~  290 (317)
T PRK06487        238 VDEQALADALRSGHLGGAATDVLSVE-PPVNGNPLLAPDIPRLIV----TPHSAWGSR  290 (317)
T ss_pred             cCHHHHHHHHHcCCeeEEEeecCCCC-CCCCCCchhhcCCCCEEE----CCccccCCH
Confidence             9999999999999977666433222 2232 2222    23333    789886553

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.92  E-value=2e-24  Score=196.20  Aligned_cols=198  Identities=17%  Similarity=0.155  Sum_probs=151.1

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhh--hccCcCcccCCCEEEEEcCchHHH
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYS--LKRSTDVMFGGKQVVLCGYGEVGK  122 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~l~g~~V~IiG~G~IG~  122 (258)
                      +.++.|++.|++.+.++||+++.+++...|++.....    ..+.|.|......  .....+.++.|++|||||+|.||+
T Consensus        88 ~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~  163 (333)
T PRK13243         88 RRGIYVTNTPGVLTEATADFAWALLLATARRLVEADH----FVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQ  163 (333)
T ss_pred             HcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCCccccccccccccccCCCCCEEEEECcCHHHH
Confidence            3488999999999999999999999988888765332    2344556421100  001124578999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC
Q psy16115        123 GCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       123 ~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+|+++++||++|++||+++... .....+....++++++++||+|++|.    .|.++++++.|+.||+|+++||+||+
T Consensus       164 ~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg  242 (333)
T PRK13243        164 AVARRAKGFGMRILYYSRTRKPE-AEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARG  242 (333)
T ss_pred             HHHHHHHHCCCEEEEECCCCChh-hHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCc
Confidence            99999999999999999986543 23345666678999999999999983    57889999999999999999999999


Q ss_pred             ---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115        199 ---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 ---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                         |+++++++|++|+|...++..+..+ +++.+++-+...+  +-+||++.++.
T Consensus       243 ~~vd~~aL~~aL~~g~i~gAaLDV~~~E-P~~~~pL~~~~nv--ilTPHia~~t~  294 (333)
T PRK13243        243 KVVDTKALVKALKEGWIAGAGLDVFEEE-PYYNEELFSLKNV--VLAPHIGSATF  294 (333)
T ss_pred             hhcCHHHHHHHHHcCCeEEEEeccCCCC-CCCCchhhcCCCE--EECCcCCcCHH
Confidence               9999999999999976665433322 3334444444433  34699887664

>PLN03139 formate dehydrogenase; Provisional

Probab=99.91  E-value=2.6e-24  Score=197.84  Aligned_cols=166  Identities=17%  Similarity=0.159  Sum_probs=136.9

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|+++|+..+.+|||+++.+++...|++......    .+.|.|.....   ...+.++.|++|||+|+|.||+.+|
T Consensus       143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~----~~~g~W~~~~~---~~~~~~L~gktVGIVG~G~IG~~vA  215 (386)
T PLN03139        143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQ----VVSGEWNVAGI---AYRAYDLEGKTVGTVGAGRIGRLLL  215 (386)
T ss_pred             CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHH----HHhCCCccccc---cCCCcCCCCCEEEEEeecHHHHHHH
Confidence            3899999999999999999999999999998764432    34566642110   1124578999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      ++|+.||++|++||+++...+...+.|+.. .++++++++||+|++|.    .|.++++++.|+.||+|+++||+|||  
T Consensus       216 ~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~i  295 (386)
T PLN03139        216 QRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAI  295 (386)
T ss_pred             HHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCch
Confidence            999999999999998864443344556654 48999999999999983    67889999999999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeec
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~  218 (258)
                       |+++++++|++|+|...+..
T Consensus       296 VDe~AL~~AL~sG~l~GAaLD  316 (386)
T PLN03139        296 MDTQAVADACSSGHIGGYGGD  316 (386)
T ss_pred             hhHHHHHHHHHcCCceEEEEc
Confidence             99999999999999766653

>PLN02306 hydroxypyruvate reductase

Probab=99.91  E-value=5.5e-24  Score=196.14  Aligned_cols=197  Identities=16%  Similarity=0.192  Sum_probs=144.2

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC  124 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~  124 (258)
                      +.++.|++.|+..+.++||+++.+++...|++......    .+.|.|......  ...+.++.|+||||+|+|.||+.+
T Consensus       107 ~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~----~~~g~w~~~~~~--~~~g~~L~gktvGIiG~G~IG~~v  180 (386)
T PLN02306        107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF----MRAGLYEGWLPH--LFVGNLLKGQTVGVIGAGRIGSAY  180 (386)
T ss_pred             HCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHH----HHcCCCcccccc--ccCCcCCCCCEEEEECCCHHHHHH
Confidence            34899999999999999999999999999998654332    223334211000  012456899999999999999999


Q ss_pred             HHHHH-hCCCEEEEEeCChhhHHHH--HhCC------------Cc-ccCHHHHHHhCCeeeec----cCccccccHHHHh
Q psy16115        125 CQSLK-GLGCVIYITEIDPICALQA--CMDG------------FS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMD  184 (258)
Q Consensus       125 a~~l~-~~G~~Vi~~d~~~~~~~~a--~~~g------------~~-~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~  184 (258)
                      |++++ +|||+|++||+++......  ...+            .. ..++++++++||+|++|    ..|.++|+++.|+
T Consensus       181 A~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~  260 (386)
T PLN02306        181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
T ss_pred             HHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHH
Confidence            99985 9999999999876422110  1111            12 24899999999999997    3788999999999


Q ss_pred             cCCCCcEEEecCCC---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115        185 KMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       185 ~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                      +||+|+++||+|||   |+++++++|++|++...++..+..+ +.+.+++-....+  +-+||++.++.
T Consensus       261 ~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~E-P~~~~~L~~~pNV--ilTPHiag~T~  326 (386)
T PLN02306        261 LMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDE-PYMKPGLADMKNA--VVVPHIASASK  326 (386)
T ss_pred             hCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCC-CCCcchHhhCCCE--EECCccccCcH
Confidence            99999999999999   9999999999999977666433322 2233334333322  23688876553

>PRK07574 formate dehydrogenase; Provisional

Probab=99.91  E-value=4e-24  Score=196.73  Aligned_cols=165  Identities=15%  Similarity=0.162  Sum_probs=135.1

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|+++|+..+.++||+++.+++...|++......    .+.|.|......   ..+.++.|++|||+|+|.||+.+|
T Consensus       136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~----~~~g~W~~~~~~---~~~~~L~gktVGIvG~G~IG~~vA  208 (385)
T PRK07574        136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQ----AVEGGWNIADCV---SRSYDLEGMTVGIVGAGRIGLAVL  208 (385)
T ss_pred             CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHH----HHhCCCCccccc---ccceecCCCEEEEECCCHHHHHHH
Confidence            3899999999999999999999999999998654322    244556422100   113568999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      ++|+.||++|++||+++.........++. ..++++++++||+|++|.    .|.++++++.|+.||+|+++||+||+  
T Consensus       209 ~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~i  288 (385)
T PRK07574        209 RRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKI  288 (385)
T ss_pred             HHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCch
Confidence            99999999999999986433333345655 468999999999999983    67899999999999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeee
Q psy16115        199 -NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~  217 (258)
                       |+++++++|++|+|...+.
T Consensus       289 VDe~AL~~AL~sG~i~GAaL  308 (385)
T PRK07574        289 VDRDAVVRALESGHLAGYAG  308 (385)
T ss_pred             hhHHHHHHHHHhCCccEEEE
Confidence             9999999999999976655

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.91  E-value=8.1e-24  Score=196.87  Aligned_cols=190  Identities=19%  Similarity=0.263  Sum_probs=144.9

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC  124 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~  124 (258)
                      +.++.|++.|+..+.++||+++.+++...|++......    .+.|.|....     ..+.++.|+|+||+|+|.||+.+
T Consensus        96 ~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~----~~~g~w~~~~-----~~~~~L~gktvGIiG~G~IG~~v  166 (409)
T PRK11790         96 KRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAK----AHRGGWNKSA-----AGSFEVRGKTLGIVGYGHIGTQL  166 (409)
T ss_pred             hCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHH----HHcCcccccc-----cCcccCCCCEEEEECCCHHHHHH
Confidence            34899999999999999999999999999998764432    3445664321     12457899999999999999999


Q ss_pred             HHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        125 CQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       125 a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      |+++++|||+|++||+++...    ..++. ..++++++++||+|++|    ..|.++++++.|+.||+|+++||+||| 
T Consensus       167 A~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~  242 (409)
T PRK11790        167 SVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGT  242 (409)
T ss_pred             HHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCc
Confidence            999999999999999864321    12333 34899999999999998    368899999999999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeeccCcceeecCC-----CccCCCceeEEecCCChhHHHH
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVRSQVDHVIWPD-----VNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~-----~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                        |+++++++|++|++...++..+..+ +.+.     +.+-+...+  +-+||.+.+..
T Consensus       243 ~vde~aL~~aL~~g~i~gaalDVf~~E-P~~~~~~~~~pL~~~~nv--ilTPHia~~t~  298 (409)
T PRK11790        243 VVDIDALADALKSGHLAGAAIDVFPVE-PKSNGDPFESPLRGLDNV--ILTPHIGGSTQ  298 (409)
T ss_pred             ccCHHHHHHHHHcCCceEEEEcCCCCC-CCCccccccchhhcCCCE--EECCcCCCCHH
Confidence              9999999999999976665433221 2221     223333332  23688876654

>KOG0068|consensus

Probab=99.90  E-value=2.5e-24  Score=189.72  Aligned_cols=168  Identities=17%  Similarity=0.191  Sum_probs=143.7

Q ss_pred             CCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115         44 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG  123 (258)
Q Consensus        44 ~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~  123 (258)
                      .++++-|.|.|.+.+.++||+.+.+++.+.|++.+...    ..+.|.|...     ...+.++.|||++|+|+|+||..
T Consensus        90 te~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~----s~k~g~wnr~-----~~~G~el~GKTLgvlG~GrIGse  160 (406)
T KOG0068|consen   90 TENGILVVNTPTANSRSAAELTIGLILSLARQIGQASA----SMKEGKWNRV-----KYLGWELRGKTLGVLGLGRIGSE  160 (406)
T ss_pred             HhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhhe----eeecCceeec-----ceeeeEEeccEEEEeecccchHH
Confidence            46699999999999999999999999999998876433    3456777432     22356799999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      +|.+++.+|++|+.||+-... ..+...|++..+++|++..||++.+|    +.|.++++.+.|..||+|.++||++|| 
T Consensus       161 VA~r~k~~gm~vI~~dpi~~~-~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGG  239 (406)
T KOG0068|consen  161 VAVRAKAMGMHVIGYDPITPM-ALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGG  239 (406)
T ss_pred             HHHHHHhcCceEEeecCCCch-HHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCc
Confidence            999999999999999875443 34667899999999999999999998    478899999999999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeeccCc
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                        |++++++++++|++.......|+
T Consensus       240 vVDe~ALv~Al~sG~vaGaAlDVy~  264 (406)
T KOG0068|consen  240 VVDEPALVRALDSGQVAGAALDVYP  264 (406)
T ss_pred             eechHHHHHHHhcCcccceeeeccc
Confidence              99999999999999776665444

>PLN02928 oxidoreductase family protein

Probab=99.90  E-value=1.7e-23  Score=190.98  Aligned_cols=191  Identities=18%  Similarity=0.207  Sum_probs=141.7

Q ss_pred             CCCceEECChh---hhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHH
Q psy16115         46 YKSDVYLLPKK---MDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGK  122 (258)
Q Consensus        46 ~~~~V~~lP~~---~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~  122 (258)
                      .++.|++.|++   ...++||+++.+++...|++.....    ..+.|.|..       ..+.++.|+|+||+|+|.||+
T Consensus       104 ~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~----~~~~~~w~~-------~~~~~l~gktvGIiG~G~IG~  172 (347)
T PLN02928        104 HGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQI----SLKARRLGE-------PIGDTLFGKTVFILGYGAIGI  172 (347)
T ss_pred             CCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHH----HHHcCCccc-------ccccCCCCCEEEEECCCHHHH
Confidence            38899999985   5789999999998888888754332    223444532       113468999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEeCChhhHHHH------------HhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcC
Q psy16115        123 GCCQSLKGLGCVIYITEIDPICALQA------------CMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKM  186 (258)
Q Consensus       123 ~~a~~l~~~G~~Vi~~d~~~~~~~~a------------~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~  186 (258)
                      .+|++|++||++|++||++..+....            ...+....++++++++||+|++|    .+|.++++++.|+.|
T Consensus       173 ~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~M  252 (347)
T PLN02928        173 ELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSM  252 (347)
T ss_pred             HHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcC
Confidence            99999999999999999874332111            00112456899999999999998    368899999999999


Q ss_pred             CCCcEEEecCCC---ChhhchhhhcCCCceeeeeccCcceeec-CCCccCCCceeEEecCCChhHHHH
Q psy16115        187 KNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKVRSQVDHVIW-PDVNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       187 k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                      |+|++|||+|||   |+++++++|++|+|...++..+..+ ++ +.+++-+...+  +-+||++.++.
T Consensus       253 k~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~E-P~~~~~pL~~~~nv--iiTPHia~~t~  317 (347)
T PLN02928        253 KKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSE-PFDPDDPILKHPNV--IITPHVAGVTE  317 (347)
T ss_pred             CCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCC-CCCCCChhhcCCCE--EECCcCCCChH
Confidence            999999999999   9999999999999976665433222 22 22333333332  23688876654

>KOG0069|consensus

Probab=99.90  E-value=1.2e-23  Score=188.29  Aligned_cols=194  Identities=20%  Similarity=0.269  Sum_probs=152.6

Q ss_pred             CCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115         44 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG  123 (258)
Q Consensus        44 ~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~  123 (258)
                      +++++.|.++|+..++++|++++..++..+|++.+.+..    .+.|.|. ..  .....+.++.||||||+|+|.||+.
T Consensus       104 ~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~----~~~g~w~-~~--~~~~~g~~~~gK~vgilG~G~IG~~  176 (336)
T KOG0069|consen  104 RKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEM----VRNGGWG-WA--GGWPLGYDLEGKTVGILGLGRIGKA  176 (336)
T ss_pred             HhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhh----hhcCCcc-cc--CCccccccccCCEEEEecCcHHHHH
Confidence            456999999999999999999999899999998875532    3455551 11  1112255689999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      +|++|++||+.+.++.|++.+.+.+.+.+....++++.+.++|+|++|    ..|.+++|++.|.+||+|+++||+||| 
T Consensus       177 ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~  256 (336)
T KOG0069|consen  177 IAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGA  256 (336)
T ss_pred             HHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccc
Confidence            999999999778888888887777777778889999999999999997    368899999999999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhH
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRL  247 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  247 (258)
                        |+++++++|++|++...+..-.-.+-..+..|+...-++   -.||...
T Consensus       257 iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv---~~PHigs  304 (336)
T KOG0069|consen  257 IIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVV---ILPHIGS  304 (336)
T ss_pred             cccHHHHHHHHhcCCcccccccccCCCCCCCcchhccccee---Eeccccc
Confidence              999999999999997766643222213334444433333   1366544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.90  E-value=1.8e-23  Score=173.98  Aligned_cols=118  Identities=23%  Similarity=0.358  Sum_probs=101.1

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCcccccc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVT  179 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~  179 (258)
                      +.++.|+||||+|+|.||+.+|+++++||++|++||++..........++...++++++++||+|++|    ..|.++++
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~li~  110 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGLIN  110 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTSBS
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhccccccceeee
Confidence            45789999999999999999999999999999999999876554556777888999999999999997    36789999


Q ss_pred             HHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeeeccCc
Q psy16115        180 REHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                      ++.|+.||+|+++||+|||   |+++++++|++|++....+....
T Consensus       111 ~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~  155 (178)
T PF02826_consen  111 AEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFE  155 (178)
T ss_dssp             HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred             eeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCC
Confidence            9999999999999999999   99999999999999877664433

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.89  E-value=7.4e-23  Score=196.07  Aligned_cols=192  Identities=16%  Similarity=0.155  Sum_probs=148.8

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|...     ...+.++.||||||+|+|.||+.+|
T Consensus        84 ~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~W~~~-----~~~g~~l~gktvgIiG~G~IG~~vA  154 (525)
T TIGR01327        84 RGILVVNAPTGNTISAAEHALAMLLAAARNIPQADA----SLKEGEWDRK-----AFMGTELYGKTLGVIGLGRIGSIVA  154 (525)
T ss_pred             CCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHH----HHHcCCcccc-----ccCccccCCCEEEEECCCHHHHHHH
Confidence            389999999999999999999999999998865433    2345566421     1124578999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      ++|++||++|++||++... ..+...++... ++++++++||+|++|    ..|.++++++.|+.||+|+++||+|||  
T Consensus       155 ~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~  233 (525)
T TIGR01327       155 KRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGI  233 (525)
T ss_pred             HHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCce
Confidence            9999999999999986332 23445676644 799999999999998    368899999999999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                       |+++++++|++|++...++..+..+ +.+.+++-....+  +-+||.+.++.
T Consensus       234 vde~aL~~aL~~g~i~gAaLDVf~~E-P~~~~pL~~~~nv--i~TPHia~~t~  283 (525)
T TIGR01327       234 IDEAALYEALEEGHVRAAALDVFEKE-PPTDNPLFDLDNV--IATPHLGASTR  283 (525)
T ss_pred             eCHHHHHHHHHcCCeeEEEEecCCCC-CCCCChhhcCCCe--EECCCccccHH
Confidence             9999999999999977666433222 2334444433333  33688876654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.89  E-value=9e-23  Score=195.51  Aligned_cols=192  Identities=17%  Similarity=0.165  Sum_probs=149.8

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|....     ..+.++.|+|+||+|+|.||+.+|
T Consensus        86 ~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~----~~~~g~W~~~~-----~~g~~l~gktvgIiG~G~IG~~vA  156 (526)
T PRK13581         86 RGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHA----SLKAGKWERKK-----FMGVELYGKTLGIIGLGRIGSEVA  156 (526)
T ss_pred             CCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHH----HHHcCCCCccC-----ccccccCCCEEEEECCCHHHHHHH
Confidence            489999999999999999999999999998875433    23455664311     124568999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      +++++||++|++||++... ..+...++...++++++++||+|++|.    .|.++++++.|+.||+|+++||+|||   
T Consensus       157 ~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~v  235 (526)
T PRK13581        157 KRAKAFGMKVIAYDPYISP-ERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGII  235 (526)
T ss_pred             HHHHhCCCEEEEECCCCCh-hHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCcee
Confidence            9999999999999986542 234456777779999999999999983    67899999999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                      |+++++++|++|++...++..+..+ +.+.+++-+...+  +-+||.+.++.
T Consensus       236 de~aL~~aL~~g~i~gAaLDVf~~E-P~~~~pL~~~~nv--ilTPHia~~t~  284 (526)
T PRK13581        236 DEAALAEALKSGKVAGAALDVFEKE-PPTDSPLFELPNV--VVTPHLGASTA  284 (526)
T ss_pred             CHHHHHHHHhcCCeeEEEEecCCCC-CCCCchhhcCCCe--eEcCccccchH
Confidence            9999999999999976666433221 2334444443333  33688876554

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.89  E-value=2.1e-22  Score=188.00  Aligned_cols=172  Identities=42%  Similarity=0.684  Sum_probs=143.5

Q ss_pred             CCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115         44 GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG  123 (258)
Q Consensus        44 ~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~  123 (258)
                      ++.++.|+++|+..+.+++++.+..+....                       .++.+..+..+.|++|+|+|+|.||+.
T Consensus       212 g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~-----------------------d~~~R~~~~~LaGKtVgVIG~G~IGr~  268 (476)
T PTZ00075        212 GELLFPAINVNDSVTKSKFDNIYGCRHSLI-----------------------DGIFRATDVMIAGKTVVVCGYGDVGKG  268 (476)
T ss_pred             CCCCceEEEeCCcchHHHHHHHHHHHHHHH-----------------------HHHHHhcCCCcCCCEEEEECCCHHHHH
Confidence            667899999999999999998654432222                       223333345689999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhc
Q psy16115        124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID  203 (258)
Q Consensus       124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~  203 (258)
                      +|++++.+|++|+++|+++.+...+...|++..+++++++.+|+|++|+++.++++++.|+.||+|++++|+||++.+++
T Consensus       269 vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~  348 (476)
T PTZ00075        269 CAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQ  348 (476)
T ss_pred             HHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHh
Confidence            99999999999999999988876666778888889999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCC-ceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        204 VNSLRTPD-LTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       204 ~~~l~~~~-i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      +++|+.+. +++...++.++.|.++++     .-+.|++.+
T Consensus       349 i~aL~~~~~vdv~evep~v~~~~~~~g-----~~i~llaeG  384 (476)
T PTZ00075        349 VAELEAYPGIEIVEIKPQVDRYTFPDG-----KGIILLAEG  384 (476)
T ss_pred             HHHHHhcCCceeecccCCCCeEEeCCC-----CEEEEEeCC
Confidence            99988755 888888899988887643     444454443

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.89  E-value=4.8e-23  Score=167.01  Aligned_cols=148  Identities=47%  Similarity=0.761  Sum_probs=121.0

Q ss_pred             CCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec
Q psy16115         92 FKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA  171 (258)
Q Consensus        92 ~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~  171 (258)
                      +++.+.++++..+..+.||+++|+|+|.+|+.+|+.|+++|++|+++|++|.+..+|..+|++..+++++++.+|+++.+
T Consensus         6 g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta   85 (162)
T PF00670_consen    6 GQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA   85 (162)
T ss_dssp             HHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred             chhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence            34455666666677789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115        172 TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ||...++..+.|+.||+|+++.|+|..|.|++++.|+...+....+++++++|.+|.     +.-+.|++.++
T Consensus        86 TG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~~v~~y~l~~-----G~~i~lLa~Gr  153 (162)
T PF00670_consen   86 TGNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRPQVDRYTLPD-----GRRIILLAEGR  153 (162)
T ss_dssp             SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEETTEEEEEETT-----SEEEEEEGGGS
T ss_pred             CCCccccCHHHHHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCCCeeEEEeCC-----CCEEEEEECCC
Confidence            999999999999999999999999999999999999988888899999999999765     45666776554

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.87  E-value=6.3e-22  Score=181.53  Aligned_cols=170  Identities=14%  Similarity=0.108  Sum_probs=129.4

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.+.+.|+..+.+|||+++..++...++                           .+.++.|+||||||+|.||+.+|
T Consensus        80 ~gI~v~napg~na~aVAE~~~~~lL~l~r~---------------------------~g~~L~gktvGIIG~G~IG~~vA  132 (378)
T PRK15438         80 AGIGFSAAPGCNAIAVVEYVFSSLLMLAER---------------------------DGFSLHDRTVGIVGVGNVGRRLQ  132 (378)
T ss_pred             CCCEEEECCCcCchHHHHHHHHHHHHHhcc---------------------------CCCCcCCCEEEEECcCHHHHHHH
Confidence            389999999999999999987665533221                           12357999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc--------CccccccHHHHhcCCCCcEEEecCC
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT--------GNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~--------~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      ++++++|++|++||+....    ......+.++++++++||+|++|+        .|.++++++.|+.||+|+++||+||
T Consensus       133 ~~l~a~G~~V~~~dp~~~~----~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aR  208 (378)
T PRK15438        133 ARLEALGIKTLLCDPPRAD----RGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACR  208 (378)
T ss_pred             HHHHHCCCEEEEECCcccc----cccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCC
Confidence            9999999999999864321    112234568999999999999973        2789999999999999999999999


Q ss_pred             C---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115        198 S---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       198 ~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                      |   |+++++++|++|++....+.....+ +.+...+-+...   +.+||++-|+.
T Consensus       209 G~vVDe~AL~~aL~~g~~~ga~LDV~e~E-P~~~~~Ll~~~~---i~TPHiAg~s~  260 (378)
T PRK15438        209 GAVVDNTALLTCLNEGQKLSVVLDVWEGE-PELNVELLKKVD---IGTPHIAGYTL  260 (378)
T ss_pred             chhcCHHHHHHHHHhCCCcEEEEecCCCC-CCCchhhhhcCC---EECCccCcCcH
Confidence            9   9999999999998865554322211 122222322221   45799987653

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.86  E-value=5.5e-22  Score=178.50  Aligned_cols=160  Identities=12%  Similarity=0.170  Sum_probs=127.5

Q ss_pred             CCceEECCh-hhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         47 KSDVYLLPK-KMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        47 ~~~V~~lP~-~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      ++.|++.++ .....+||+++.+++...|++.....    ..+.|.|...       ...++.|+||||+|+|.||+.+|
T Consensus        84 ~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~----~~~~~~w~~~-------~~~~l~g~tvgIvG~G~IG~~vA  152 (312)
T PRK15469         84 SVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQA----LQNSSHWQPL-------PEYHREDFTIGILGAGVLGSKVA  152 (312)
T ss_pred             CceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHH----HHHhCCcCCC-------CCCCcCCCEEEEECCCHHHHHHH
Confidence            788898876 46789999999999999898865432    2344556421       12357999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      ++|++||++|++||+++.+.... ..-....++++++++||+|++|    ..|.++++++.|+.||+|+++||+|||   
T Consensus       153 ~~l~afG~~V~~~~~~~~~~~~~-~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vV  231 (312)
T PRK15469        153 QSLQTWGFPLRCWSRSRKSWPGV-QSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHV  231 (312)
T ss_pred             HHHHHCCCEEEEEeCCCCCCCCc-eeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCcccc
Confidence            99999999999999876432110 0011245789999999999998    367789999999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeec
Q psy16115        199 NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~  218 (258)
                      |+++++++|++|++...++.
T Consensus       232 de~aL~~aL~~g~i~gaalD  251 (312)
T PRK15469        232 VEDDLLAALDSGKVKGAMLD  251 (312)
T ss_pred             CHHHHHHHHhcCCeeeEEec
Confidence            99999999999999766553

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.86  E-value=2.7e-21  Score=173.24  Aligned_cols=154  Identities=18%  Similarity=0.262  Sum_probs=124.8

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.+.+ ++..+.++||+++.+++...|++.....    ..+.|.|...       .+.++.|+||||+|+|.||+.+|+
T Consensus        72 ~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~~~----~~~~g~w~~~-------~~~~L~gktvgIiG~G~IG~~vA~  139 (303)
T PRK06436         72 VVLCSN-AGAYSISVAEHAFALLLAWAKNICENNY----NMKNGNFKQS-------PTKLLYNKSLGILGYGGIGRRVAL  139 (303)
T ss_pred             CeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHHHH----HHHcCCCCCC-------CCCCCCCCEEEEECcCHHHHHHHH
Confidence            444444 5667889999999999999998875432    2345666431       134689999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      ++++||++|++||++...      .+..  ..++++++++||+|++|    ..|.++++++.|+.||+|+++||+||+  
T Consensus       140 ~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~  213 (303)
T PRK06436        140 LAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADV  213 (303)
T ss_pred             HHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccc
Confidence            999999999999987532      1221  45899999999999998    368899999999999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeec
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~  218 (258)
                       |++++.++|+++++....+.
T Consensus       214 vd~~aL~~aL~~g~i~~a~lD  234 (303)
T PRK06436        214 VDKNDMLNFLRNHNDKYYLSD  234 (303)
T ss_pred             cCHHHHHHHHHcCCceEEEEc
Confidence             89999999999998765553

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.86  E-value=2.5e-21  Score=178.04  Aligned_cols=171  Identities=14%  Similarity=0.118  Sum_probs=130.2

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.+.+.|+..+.+|||+++..++...+.                           .+.++.|+||||||+|.||+.++
T Consensus        80 ~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------------~g~~l~gktvGIIG~G~IG~~va  132 (381)
T PRK00257         80 AGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------------EGVDLAERTYGVVGAGHVGGRLV  132 (381)
T ss_pred             CCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------------cCCCcCcCEEEEECCCHHHHHHH
Confidence            389999999999999999987665533221                           13457999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc--------CccccccHHHHhcCCCCcEEEecCC
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT--------GNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~--------~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      ++++++|++|++||+.....    ..+....++++++++||+|++|.        .|.++++++.|+.||+|+++||+||
T Consensus       133 ~~l~a~G~~V~~~Dp~~~~~----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aR  208 (381)
T PRK00257        133 RVLRGLGWKVLVCDPPRQEA----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASR  208 (381)
T ss_pred             HHHHHCCCEEEEECCccccc----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCC
Confidence            99999999999998754321    12345678999999999999982        3779999999999999999999999


Q ss_pred             C---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHH
Q psy16115        198 S---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEI  251 (258)
Q Consensus       198 ~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~  251 (258)
                      |   |+++++++|++|++....+.....+ +.+...+-+.   -.+.+||++.|+.=
T Consensus       209 G~vVde~AL~~aL~~g~i~~a~LDV~e~E-P~~~~~L~~~---nvi~TPHiAg~s~e  261 (381)
T PRK00257        209 GAVVDNQALREALLSGEDLDAVLDVWEGE-PQIDLELADL---CTIATPHIAGYSLD  261 (381)
T ss_pred             CcccCHHHHHHHHHhCCCcEEEEeCCCCC-CCCChhhhhC---CEEEcCccccCCHH
Confidence            9   8999999999998865544222111 1222222222   23457999987653

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.86  E-value=2.6e-21  Score=175.51  Aligned_cols=161  Identities=16%  Similarity=0.232  Sum_probs=129.0

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|+++|++.+.++||+++.+++...|++......    .+.|.|.  |..  ...+.++.|++|||||+|.||+.+|
T Consensus        91 ~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~----~~~~~~~--w~~--~~~~~~l~g~~VgIIG~G~IG~~vA  162 (330)
T PRK12480         91 HNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERR----VQAHDFT--WQA--EIMSKPVKNMTVAIIGTGRIGAATA  162 (330)
T ss_pred             CCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHH----HHhCCcc--ccc--ccCccccCCCEEEEECCCHHHHHHH
Confidence            4899999999999999999999999888887653332    1223321  100  0123568999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      ++|+.+|++|++||+++......    .. ..++++++++||+|++|.    .+.++++++.++.||+|+++||+|||  
T Consensus       163 ~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~  238 (330)
T PRK12480        163 KIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV  238 (330)
T ss_pred             HHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccc
Confidence            99999999999999987543211    12 247899999999999983    35688999999999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeec
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~  218 (258)
                       |+++++++|++|++...++.
T Consensus       239 vd~~aL~~aL~~g~i~gaalD  259 (330)
T PRK12480        239 INTPDLIAAVNDGTLLGAAID  259 (330)
T ss_pred             cCHHHHHHHHHcCCeeEEEEe
Confidence             99999999999999766553

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.86  E-value=1.7e-21  Score=180.40  Aligned_cols=175  Identities=41%  Similarity=0.680  Sum_probs=148.2

Q ss_pred             cCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc
Q psy16115         75 ELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS  154 (258)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~  154 (258)
                      +++.+..+...+.+.|..+..+.++.+..+..+.|++|+|+|+|+||+.+++.++.+|++|+++|+++.++..|...|++
T Consensus       168 ~vnds~~K~~~dn~~g~g~s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~  247 (413)
T cd00401         168 NVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE  247 (413)
T ss_pred             EecchhhcccccccchhchhhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE
Confidence            34455556666677777777788888877777899999999999999999999999999999999999999899999998


Q ss_pred             ccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCC
Q psy16115        155 VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNN  234 (258)
Q Consensus       155 ~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~  234 (258)
                      ..++++.++.+|+|++|+++.++++.+.++.||+|++++|+|+.+.+++...+..+++++.+++.++.+|.+++     +
T Consensus       248 ~~~~~e~v~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~~~~~~~~~-----g  322 (413)
T cd00401         248 VMTMEEAVKEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQVDRYELPD-----G  322 (413)
T ss_pred             EccHHHHHcCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCCcceEEcCC-----c
Confidence            77788888999999999999999986679999999999999999888888999999999999998887666432     3


Q ss_pred             ceeEEecCCCh-hHHHHHhhh
Q psy16115        235 TVIDLFRKPKS-RLYLEILQT  254 (258)
Q Consensus       235 ~~~~l~~~~~~-~~~~~~~~~  254 (258)
                      ..+.|++.++. ++...++|+
T Consensus       323 ~aI~LLa~Grlvnl~~~~gH~  343 (413)
T cd00401         323 RRIILLAEGRLVNLGCATGHP  343 (413)
T ss_pred             chhhhhhCcCCCCCcccCCCc
Confidence            55666677766 667677776

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=99.85  E-value=4.3e-21  Score=170.76  Aligned_cols=154  Identities=43%  Similarity=0.693  Sum_probs=144.6

Q ss_pred             cCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc
Q psy16115         75 ELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS  154 (258)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~  154 (258)
                      +++.+..++..+++.|.-++.++++.|.++.-++||+++|.|+|.+|+.+|++++..|++|++++.+|-+..+|..+|++
T Consensus       175 ~VNDs~tK~~FDNrYGtgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~  254 (420)
T COG0499         175 NVNDSVTKSLFDNRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR  254 (420)
T ss_pred             eecchhhhcccccccccchhHHHHHHhhhceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE
Confidence            45667778888899999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             ccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCC
Q psy16115        155 VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD  228 (258)
Q Consensus       155 ~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~  228 (258)
                      +...++..+.+|+++.+||+.+++..+.|..||+|+++.|.|..|.|+++..|+.....+...++++++|.+++
T Consensus       255 V~~m~~Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V~ey~l~~  328 (420)
T COG0499         255 VMTMEEAAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQVDEYELPD  328 (420)
T ss_pred             EEEhHHhhhcCCEEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccCceEEEcCC
Confidence            99999999999999999999999999999999999999999999999999999987788889999999999874

>PLN02494 adenosylhomocysteinase

Probab=99.84  E-value=3.5e-20  Score=172.76  Aligned_cols=154  Identities=44%  Similarity=0.748  Sum_probs=132.5

Q ss_pred             cCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc
Q psy16115         75 ELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS  154 (258)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~  154 (258)
                      +++.+..+...+.+.|.-+..+.++.+..+..+.|++|+|+|+|+||+.+|+.++.+|++|+++|+++.+...+...|+.
T Consensus       220 ~vnds~~K~~fDn~yGtgqS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~  299 (477)
T PLN02494        220 NVNDSVTKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ  299 (477)
T ss_pred             EEcChhhhhhhhccccccccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe
Confidence            44566677777788888888899998888888899999999999999999999999999999999999887678788888


Q ss_pred             ccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCC-ceeeeeccCcceeecCC
Q psy16115        155 VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPD-LTWEKVRSQVDHVIWPD  228 (258)
Q Consensus       155 ~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~-i~~~~~~~~~~~~~~~~  228 (258)
                      ..+++++++.+|++++++++.++++.+.|+.||+|++++|+|+.+.+++..+|..-. +.....++..+.|.+++
T Consensus       300 vv~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~vd~y~~~d  374 (477)
T PLN02494        300 VLTLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPD  374 (477)
T ss_pred             eccHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCceEEEcCC
Confidence            778899999999999999999999889999999999999999987777777776542 55556668888888654

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.84  E-value=1.8e-20  Score=170.21  Aligned_cols=163  Identities=16%  Similarity=0.213  Sum_probs=129.5

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC  124 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~  124 (258)
                      +.++.|+++|++.+.++||+++.+++...|++......    .+.|.|.  |..  ...+.++.|++|||||+|.||+.+
T Consensus        90 ~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~----~~~~~~~--~~~--~~~~~~l~g~~VgIIG~G~IG~~v  161 (332)
T PRK08605         90 KYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTK----VREHDFR--WEP--PILSRSIKDLKVAVIGTGRIGLAV  161 (332)
T ss_pred             HCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHH----HHhCCcc--ccc--ccccceeCCCEEEEECCCHHHHHH
Confidence            34899999999999999999999999999988654322    1233331  111  012456899999999999999999


Q ss_pred             HHHH-HhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC
Q psy16115        125 CQSL-KGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       125 a~~l-~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      |++| +++|++|+++|+++.....   ..+.. .+++++++++|+|++|.    .+.++++.+.++.||+|+++||+|||
T Consensus       162 A~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG  238 (332)
T PRK08605        162 AKIFAKGYGSDVVAYDPFPNAKAA---TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARG  238 (332)
T ss_pred             HHHHHhcCCCEEEEECCCccHhHH---hhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCC
Confidence            9999 7899999999988754321   22333 47999999999999983    46788988899999999999999999


Q ss_pred             ---ChhhchhhhcCCCceeeeec
Q psy16115        199 ---NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       199 ---~~~~~~~~l~~~~i~~~~~~  218 (258)
                         ++++++++|++|+|...++.
T Consensus       239 ~~vd~~aL~~aL~~g~i~gaalD  261 (332)
T PRK08605        239 SLVDTKALLDALDNGLIKGAALD  261 (332)
T ss_pred             cccCHHHHHHHHHhCCeeEEEEe
Confidence               88999999999999766553

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.82  E-value=5e-20  Score=170.19  Aligned_cols=154  Identities=40%  Similarity=0.654  Sum_probs=128.7

Q ss_pred             CCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc
Q psy16115         76 LSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV  155 (258)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~  155 (258)
                      ++.+..+...+++.|.....+.++.+..+..+.|++|+|+|+|+||+.+|+.++.+|++|+++|+++.+...+...|+..
T Consensus       162 vnds~~K~~fDn~yg~g~s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v  241 (406)
T TIGR00936       162 VNDAYTKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRV  241 (406)
T ss_pred             ecchhhchhhhcccccchhHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEe
Confidence            34455566666677776677777777666668999999999999999999999999999999999998877788889887


Q ss_pred             cCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCC
Q psy16115        156 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDV  229 (258)
Q Consensus       156 ~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~  229 (258)
                      .++++.++++|++|+++++.++++.+.+..||+|++++|+|+++.+++.++|..--......++++++|.++++
T Consensus       242 ~~leeal~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~g  315 (406)
T TIGR00936       242 MTMEEAAKIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKDG  315 (406)
T ss_pred             CCHHHHHhcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCCC
Confidence            78889999999999999999999988999999999999999997777777776533344567788888887664

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.81  E-value=1.6e-19  Score=167.67  Aligned_cols=136  Identities=50%  Similarity=0.901  Sum_probs=119.0

Q ss_pred             CcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc
Q psy16115         93 KPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus        93 ~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~  172 (258)
                      ...+.++.+..+..+.|++|+|+|+|+||+.+++.|+.+|++|+++|+++.+...+...|++..+++++++.+|+|+.++
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT  275 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT  275 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC
Confidence            34455555554556799999999999999999999999999999999999887777777888778899999999999999


Q ss_pred             CccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCC
Q psy16115        173 GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD  228 (258)
Q Consensus       173 ~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~  228 (258)
                      ++.++++.+.++.||+|++++|+|+.+.++++++|..-......+++++++|.+++
T Consensus       276 G~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v~~y~~~~  331 (425)
T PRK05476        276 GNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQVDEYTLPD  331 (425)
T ss_pred             CCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCceEEEeCC
Confidence            99999998899999999999999999988999988865556778889999999876

>KOG1370|consensus

Probab=99.79  E-value=1.1e-18  Score=152.49  Aligned_cols=145  Identities=56%  Similarity=0.951  Sum_probs=131.6

Q ss_pred             cchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccC
Q psy16115         94 PSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus        94 ~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~  173 (258)
                      ...++++|.....+.||.++|.|+|.+|..+|+.||.+|++|++.+++|-...+|..+|+++..++|+.+++||++.++|
T Consensus       199 Sl~DgikraTDvM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTG  278 (434)
T KOG1370|consen  199 SLLDGIKRATDVMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTG  278 (434)
T ss_pred             hhhhhhhhhhhheecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccC
Confidence            33467777777778999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      ...+|..+.|+.||.++++.|+|..|.|+++..|....+++..+++++|+|.++++     .-|.|++.+
T Consensus       279 c~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~QvD~~~~~~g-----r~iIlLAeG  343 (434)
T KOG1370|consen  279 CKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQVDRYILPNG-----KHIILLAEG  343 (434)
T ss_pred             CcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeecccccceeeccCC-----cEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999996554     445555543

>KOG0024|consensus

Probab=99.72  E-value=1.3e-17  Score=147.29  Aligned_cols=175  Identities=15%  Similarity=0.182  Sum_probs=142.9

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...++++|+.++.+.+++. ++++..+++.....                  +       -.|.+|+|+|+|+||.....
T Consensus       134 ~dfc~KLPd~vs~eeGAl~-ePLsV~~HAcr~~~------------------v-------k~Gs~vLV~GAGPIGl~t~l  187 (354)
T KOG0024|consen  134 ADFCYKLPDNVSFEEGALI-EPLSVGVHACRRAG------------------V-------KKGSKVLVLGAGPIGLLTGL  187 (354)
T ss_pred             hHheeeCCCCCchhhcccc-cchhhhhhhhhhcC------------------c-------ccCCeEEEECCcHHHHHHHH
Confidence            4578899999999999875 66655544433210                  1       27999999999999999999


Q ss_pred             HHHhCCC-EEEEEeCChhhHHHHHhCCCccc-------CHHH---HHH------hCCeeeeccCccccccHHHHhcCCCC
Q psy16115        127 SLKGLGC-VIYITEIDPICALQACMDGFSVV-------KLNE---VIR------TVDIVVTATGNKNVVTREHMDKMKNG  189 (258)
Q Consensus       127 ~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-------~l~e---~~~------~aDvvi~~~~~~~~i~~~~l~~~k~g  189 (258)
                      .++++|+ +|++.|..+.|++.|++.|++..       ++++   .++      ..|+.|.|++....++ ..+..+|.+
T Consensus       188 ~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~-aai~a~r~g  266 (354)
T KOG0024|consen  188 VAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIR-AAIKATRSG  266 (354)
T ss_pred             HHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHH-HHHHHhccC
Confidence            9999998 69999999999999999998642       1233   222      2799999999999897 778889999


Q ss_pred             cEEEecCCC--ChhhchhhhcCCCceeeeeccCcc-eeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115        190 CVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVD-HVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       190 ~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      +.++-+|.+  ..+..+.....+|+++++++.|.. .|+         .++.|+.+++.+....|+|+++|
T Consensus       267 Gt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~---------~ai~li~sGki~~k~lIT~r~~~  328 (354)
T KOG0024|consen  267 GTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYP---------TAIELVSSGKIDVKPLITHRYKF  328 (354)
T ss_pred             CEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHH---------HHHHHHHcCCcCchhheeccccc
Confidence            999999988  344455566678999999999886 688         89999999999999999999986

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.48  E-value=1.7e-13  Score=121.16  Aligned_cols=192  Identities=21%  Similarity=0.229  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..+..+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|...++   .+.++
T Consensus        76 ~~l~~~I~~lN~-d~~V~GIlvq~Plp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~  153 (285)
T PRK14189         76 AELLARIDELNR-DPKIHGILVQLPLPKHIDSHKVIEAIAP-EKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIG  153 (285)
T ss_pred             HHHHHHHHHHcC-CCCCCeEEEeCCCCCCCCHHHHHhhcCc-ccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcC
Confidence            568888888888 323 244443 88899987765555555 458999988777666555555556666653   44567


Q ss_pred             cccCCCEEEEEcCchH-HHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGEV-GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~I-G~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++|+|+|.|.+ |+.++.+|...|++|++++..             ..++.+.+++||+|+.++|++++++.   
T Consensus       154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~~~~ADIVV~avG~~~~i~~---  217 (285)
T PRK14189        154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAHTRQADIVVAAVGKRNVLTA---  217 (285)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHHhhhCCEEEEcCCCcCccCH---
Confidence            7899999999999996 999999999999999998642             23577889999999999999999985   


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      +++|+|+++||+|......   .-.-|.++..........++..++.+.+-|+..|+.+
T Consensus       218 ~~ik~gavVIDVGin~~~~---gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~Ll~N  273 (285)
T PRK14189        218 DMVKPGATVIDVGMNRDDA---GKLCGDVDFAGVKEVAGYITPVPGGVGPMTITMLLVN  273 (285)
T ss_pred             HHcCCCCEEEEccccccCC---CCeeCCccHHHHHhhceEecCCCCCchHHHHHHHHHH
Confidence            5689999999999762110   0011222322333333445666777777777766654

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.47  E-value=2.5e-13  Score=120.92  Aligned_cols=196  Identities=20%  Similarity=0.195  Sum_probs=138.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        77 ~~l~~~I~~lN~-D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~  154 (301)
T PRK14194         77 ARLLALIAELNA-DPSVNGILLQLPLPAHIDEARVLQAINP-LKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTC  154 (301)
T ss_pred             HHHHHHHHHHcC-CCCCCeEEEeCCCCCCCCHHHHHhccCc-hhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhC
Confidence            568888899988 323 244443 88899988766555555 458999988777666555555556666653   34467


Q ss_pred             cccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|||.| .||+.+|.+|...|++|+++++...             ++.+.+++||+|+.+.+.++.+.+.. 
T Consensus       155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~-------------~l~e~~~~ADIVIsavg~~~~v~~~~-  220 (301)
T PRK14194        155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST-------------DAKALCRQADIVVAAVGRPRLIDADW-  220 (301)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC-------------CHHHHHhcCCEEEEecCChhcccHhh-
Confidence            78999999999997 7999999999999999999976432             57888999999999999999998543 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                        +|+|+++||+|....+..-..---|.++..........++..+|.+.+-|+-+|+.+-
T Consensus       221 --ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~~~~~a~~iTPVPGGVGp~Tva~L~~N~  278 (301)
T PRK14194        221 --LKPGAVVIDVGINRIDDDGRSRLVGDVDFDSALPVVSAITPVPGGVGPMTIAFLMKNT  278 (301)
T ss_pred             --ccCCcEEEEecccccCCCCCcceecccchHHHHhhcceecCCCCchhHHHHHHHHHHH
Confidence              8999999999976211000000112233333333334456667788877777777643

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.45  E-value=4.3e-13  Score=118.76  Aligned_cols=191  Identities=15%  Similarity=0.231  Sum_probs=136.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.++.+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        76 ~~l~~~I~~lN~-d~~V~GIivq~Plp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~  153 (286)
T PRK14175         76 EEVLNELNRLNN-DDSVSGILVQVPLPKQVSEQKILEAINP-EKDVDGFHPINIGKLYIDEQTFVPCTPLGIMEILKHAD  153 (286)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCCccchHhHhcCCCCCCCCcHHHHHHHHHHcC
Confidence            578899999988 323 244443 88999988766555555 458999988776666555555556666553   33456


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++|+|+|.|. +|+.++.+|...|++|+++++..             .++.+.+++||+||.+++.++++.++  
T Consensus       154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~~~~ADIVIsAvg~p~~i~~~--  218 (286)
T PRK14175        154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASYLKDADVIVSAVGKPGLVTKD--  218 (286)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHHhhCCEEEECCCCCcccCHH--
Confidence            689999999999999 99999999999999999997642             25778899999999999999999865  


Q ss_pred             hcCCCCcEEEecCCCC-hhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSN-TEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~-~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                       ++|+|+++||+|... .+   .. --|.++..........++..+|.+++-|+.+|+.+
T Consensus       219 -~vk~gavVIDvGi~~~~~---gk-l~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~n  273 (286)
T PRK14175        219 -VVKEGAVIIDVGNTPDEN---GK-LKGDVDYDAVKEIAGAITPVPGGVGPLTITMVLNN  273 (286)
T ss_pred             -HcCCCcEEEEcCCCcCCC---CC-eecCccHHHHHhhccCcCCCCCCCHHHHHHHHHHH
Confidence             579999999999863 11   00 11222322333333445666777777777766664

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.45  E-value=1.8e-13  Score=125.34  Aligned_cols=140  Identities=22%  Similarity=0.274  Sum_probs=112.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CCCccc-CH-H--------HHHH--hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFSVV-KL-N--------EVIR--TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g~~~~-~l-~--------e~~~--~aDvvi~~~~  173 (258)
                      .+.+|+|+|+|+||+..++.++.+|+ +|++.|+++.|++.|++ .+.+.. +. +        +...  ++|++++|+|
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            45599999999999999999999998 58999999999999888 555422 11 1        1111  4899999999


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC-Ch--hhchhhhcCCCceeeeecc-Cc-ceeecCCCccCCCceeEEecCCChhHH
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS-NT--EIDVNSLRTPDLTWEKVRS-QV-DHVIWPDVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~-~~--~~~~~~l~~~~i~~~~~~~-~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~  248 (258)
                      +...++ +.++.+++++.++.+|.. ..  ......+-.+++++.++.. .. ..|.         ..+.|+++++.+..
T Consensus       248 ~~~~~~-~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~---------~~~~ll~~g~i~~~  317 (350)
T COG1063         248 SPPALD-QALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFE---------RALDLLASGKIDPE  317 (350)
T ss_pred             CHHHHH-HHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHH---------HHHHHHHcCCCChh
Confidence            888886 899999999999999998 33  4557788889999999843 33 4577         67888888888888


Q ss_pred             HHHhhhcCC
Q psy16115        249 LEILQTCPL  257 (258)
Q Consensus       249 ~~~~~~~~~  257 (258)
                      ..|+|++||
T Consensus       318 ~lit~~~~~  326 (350)
T COG1063         318 KLITHRLPL  326 (350)
T ss_pred             HceEeeccH
Confidence            888888774

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.42  E-value=1.1e-12  Score=116.88  Aligned_cols=108  Identities=18%  Similarity=0.337  Sum_probs=86.4

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHHhCCeeeeccCccccccHH
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      .++.|++++|+|+|.||+.+|+.|+.+|++|+++++++.+...+.+.+....   ++.+.++++|+|+.|+.. .+++++
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-~ii~~~  225 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-LVLTAD  225 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-HHhCHH
Confidence            4579999999999999999999999999999999999887666666665433   467778899999998743 367788


Q ss_pred             HHhcCCCCcEEEecCCCChhhchhhhcCCCce
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLT  213 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~  213 (258)
                      .++.|+++++++|++..+...+++..+...+.
T Consensus       226 ~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~  257 (287)
T TIGR02853       226 VLSKLPKHAVIIDLASKPGGTDFEYAKKRGIK  257 (287)
T ss_pred             HHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCE
Confidence            99999999999999987444444555544443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.42  E-value=1.5e-12  Score=115.16  Aligned_cols=196  Identities=17%  Similarity=0.223  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        75 ~el~~~I~~lN~-D~~V~GIlvq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~  152 (285)
T PRK14191         75 AELLSLIKDLNT-DQNIDGILVQLPLPRHIDTKMVLEAIDP-NKDVDGFHPLNIGKLCSQLDGFVPATPMGVMRLLKHYH  152 (285)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccChhhHHHHhcCCCCCCCCcHHHHHHHHHHhC
Confidence            578888999988 322 244443 88999988776555555 458999988777666555555566666653   44567


Q ss_pred             cccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++|+|+|.| .+|+.+|.+|...|++|++++...             .++.+.+++||+|+.++|.++++..+. 
T Consensus       153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~~~~ADIvV~AvG~p~~i~~~~-  218 (285)
T PRK14191        153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFYTQNADIVCVGVGKPDLIKASM-  218 (285)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHHHHhCCEEEEecCCCCcCCHHH-
Confidence            78999999999999 599999999999999999986432             236788999999999999999998664 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                        +|+|++++|+|....+.  .. .-|.++..........+...++.+.+-|+.+|+.+--.+
T Consensus       219 --vk~GavVIDvGi~~~~~--gk-lvGDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a  276 (285)
T PRK14191        219 --VKKGAVVVDIGINRLND--GR-LVGDVDFENVAPKASFITPVPGGVGPMTIVSLLENTLIA  276 (285)
T ss_pred             --cCCCcEEEEeecccccC--Cc-eeccccHHHHhhhccEEecCCCCChHHHHHHHHHHHHHH
Confidence              59999999999752100  00 112222222333344466667888877777777654433

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.42  E-value=1.3e-12  Score=115.40  Aligned_cols=189  Identities=15%  Similarity=0.228  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+.....+..+|...++   .+.++
T Consensus        77 ~el~~~I~~lN~-D~~V~GIlvqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~  154 (284)
T PRK14177         77 EELLGVIDKLNL-DPNVDGILLQHPVPSQIDERAAFDRIAL-EKDVDGVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYG  154 (284)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhccCc-ccccccCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhC
Confidence            568888899988 323 344443 88999987766555555 458999998777666555555556666553   44567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|+|.+. +|+.++.+|...|++|++++...             .++.+.+++||+++.+.|.++++..+. 
T Consensus       155 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-------------~~l~~~~~~ADIvIsAvGk~~~i~~~~-  220 (284)
T PRK14177        155 IDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-------------QNLPSIVRQADIIVGAVGKPEFIKADW-  220 (284)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEeCCCcCccCHHH-
Confidence            789999999999999 99999999999999999996432             357788999999999999999998664 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                        +|+|+++||+|....       .-|.++..........+...+|.+.+-|+.+|+.+-
T Consensus       221 --ik~gavVIDvGin~~-------~~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~  271 (284)
T PRK14177        221 --ISEGAVLLDAGYNPG-------NVGDIEISKAKDKSSFYTPVPGGVGPMTIAVLLLQT  271 (284)
T ss_pred             --cCCCCEEEEecCccc-------ccCCcCHHHHhhhccEecCCCCCChHHHHHHHHHHH
Confidence              699999999997521       134444333444444567777888877877777653

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.41  E-value=1.1e-12  Score=115.73  Aligned_cols=193  Identities=21%  Similarity=0.245  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.++.+|. |.+ .|+-|. |+|.++++...--++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        75 ~el~~~I~~lN~-D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~  152 (284)
T PRK14170         75 EKLLSVVEELNE-DKTIHGILVQLPLPEHISEEKVIDTISY-DKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTG  152 (284)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEecCCCCCCCHHHHHhccCc-ccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence            568889999988 322 244443 88999988776555555 458999988776666555555566666653   44567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|+|.+. +|+.++.+|...|++|++++..             ..++.+.+++||+|+.+.|.+++++.+. 
T Consensus       153 i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~-------------T~~l~~~~~~ADIvI~AvG~~~~i~~~~-  218 (284)
T PRK14170        153 TQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR-------------TKDLPQVAKEADILVVATGLAKFVKKDY-  218 (284)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEecCCcCccCHHH-
Confidence            789999999999999 9999999999999999998542             2357888999999999999999998664 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                        +|+|+++||+|....+   +.-.-|.++..........++..+|.+.+-|+.+|+.+-
T Consensus       219 --vk~GavVIDvGin~~~---~gkl~GDvdfe~~~~~a~~iTPVPGGVGpvT~a~L~~N~  273 (284)
T PRK14170        219 --IKPGAIVIDVGMDRDE---NNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANT  273 (284)
T ss_pred             --cCCCCEEEEccCcccC---CCCeecccchHHHHhhccEecCCCCChHHHHHHHHHHHH
Confidence              6999999999976211   000112222222333344466667888877777776643

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.41  E-value=1.8e-12  Score=114.60  Aligned_cols=192  Identities=22%  Similarity=0.284  Sum_probs=137.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.++.+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        76 ~el~~~I~~lN~-D~~V~GIlvq~PLp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~  153 (284)
T PRK14190         76 EELLALIDRLNA-DPRINGILVQLPLPKHIDEKAVIERISP-EKDVDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYN  153 (284)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcC
Confidence            478888999988 322 244443 89999988766556555 458999998777666655555556666553   44567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|+|.+. +|+.++.+|...|++|++++...             .++.+.+++||+|+.++|.+++++.+. 
T Consensus       154 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t-------------~~l~~~~~~ADIvI~AvG~p~~i~~~~-  219 (284)
T PRK14190        154 IDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT-------------KNLAELTKQADILIVAVGKPKLITADM-  219 (284)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCCCCcCCHHH-
Confidence            789999999999999 99999999999999999986422             257788999999999999999999765 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                        +|+|+++||+|....+.  .. --|.++..........++..+|.+.+-|+.+|+.+
T Consensus       220 --ik~gavVIDvGi~~~~~--gk-l~GDvd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N  273 (284)
T PRK14190        220 --VKEGAVVIDVGVNRLEN--GK-LCGDVDFDNVKEKASYITPVPGGVGPMTITMLMHN  273 (284)
T ss_pred             --cCCCCEEEEeeccccCC--CC-eeccCcHHHHhhhceEecCCCCCChHHHHHHHHHH
Confidence              59999999999762110  00 11222222223333445666777777777766664

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.40  E-value=1.4e-12  Score=114.85  Aligned_cols=190  Identities=22%  Similarity=0.248  Sum_probs=136.3

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        76 ~el~~~I~~lN~-d~~V~GIlvqlPLP~~~~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~av~~lL~~~~  153 (278)
T PRK14172         76 EDLINEIEELNK-DNNVHGIMLQLPLPKHLDEKKITNKIDA-NKDIDCLTFISVGKFYKGEKCFLPCTPNSVITLIKSLN  153 (278)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhccCc-ccccCccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhC
Confidence            568888899988 333 344443 88999987765555555 458999988777666555555556666553   34467


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+++|+|.+. +|+.++.+|...|++|++++..             ..++.+.+++||+|+.+.|.+++++.+. 
T Consensus       154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~-------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~-  219 (278)
T PRK14172        154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSK-------------TKNLKEVCKKADILVVAIGRPKFIDEEY-  219 (278)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCccCHHH-
Confidence            789999999999999 9999999999999999999642             2357888999999999999999998664 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR  241 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  241 (258)
                        +|+|+++||+|....+   . ---|.++..........++..+|.+.+-|+.+|+.
T Consensus       220 --ik~gavVIDvGin~~~---g-kl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~  271 (278)
T PRK14172        220 --VKEGAIVIDVGTSSVN---G-KITGDVNFDKVIDKASYITPVPGGVGSLTTTLLIK  271 (278)
T ss_pred             --cCCCcEEEEeeccccC---C-ceeeeccHHHHHhhccEecCCCCCccHHHHHHHHH
Confidence              6999999999976321   0 01122222223333444666677777777666655

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=99.39  E-value=8.1e-13  Score=115.64  Aligned_cols=198  Identities=20%  Similarity=0.240  Sum_probs=143.4

Q ss_pred             hHHHHHHHHHhCCCCCC-CCce-EECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGRY-KSDV-YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~~-~~~V-~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..+..+|. |.+. ++-| .|+|.++++...-.++.+ ..++++++..+...+.....+..+|...++   .+.++
T Consensus        74 ~eLl~~I~~lN~-D~~v~GIlVQlPLp~hld~~~il~~I~p-~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~  151 (283)
T COG0190          74 EELLALIDELNA-DPEVDGILVQLPLPKHLDEQKLLQAIDP-EKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYG  151 (283)
T ss_pred             HHHHHHHHHhcC-CCCCcEEEEeCCCCCCCCHHHHHhhcCc-CCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhC
Confidence            678888899988 4332 3333 289999987665555555 358999998777666544444556776664   44567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++++|||.|. +|+.++.+|...+++|++++..-             .++.+.+++||+++.+.|.++++.++  
T Consensus       152 i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-------------~~l~~~~k~ADIvv~AvG~p~~i~~d--  216 (283)
T COG0190         152 IDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-------------KDLASITKNADIVVVAVGKPHFIKAD--  216 (283)
T ss_pred             CCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-------------CCHHHHhhhCCEEEEecCCccccccc--
Confidence            789999999999999 89999999999999999996533             35778899999999999999999855  


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHH
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~  248 (258)
                       ++|+|++++|+|..-.+.  .. --|.++..........++..+|.+.+-|+-+|+.+.--++.
T Consensus       217 -~vk~gavVIDVGinrv~~--~k-l~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~  277 (283)
T COG0190         217 -MVKPGAVVIDVGINRVND--GK-LVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAE  277 (283)
T ss_pred             -cccCCCEEEecCCccccC--Cc-eEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHH
Confidence             579999999999872221  00 11222333333334457778888888888888876544443

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.39  E-value=2.1e-12  Score=114.20  Aligned_cols=190  Identities=19%  Similarity=0.227  Sum_probs=134.7

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..+..+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        82 ~el~~~I~~LN~-D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~g~~~~~PcTp~av~~ll~~~~  159 (287)
T PRK14176         82 EELLELIDSLNK-RKDVHGILLQLPLPKHLDPQEAMEAIDP-AKDADGFHPYNMGKLMIGDEGLVPCTPHGVIRALEEYG  159 (287)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhccCc-cccccccChhhhhhHhcCCCCCCCCcHHHHHHHHHHcC
Confidence            578888999988 333 244443 88899987766555555 458999988777666555555556666553   34456


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++|+|+|.|. +|+.++.+|...|++|++++...             .++.+.+++||+++.+.|.++++..+  
T Consensus       160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvv~AvG~p~~i~~~--  224 (287)
T PRK14176        160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT-------------DDLKKYTLDADILVVATGVKHLIKAD--  224 (287)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC-------------CCHHHHHhhCCEEEEccCCccccCHH--
Confidence            789999999999999 99999999999999999997422             25788899999999999999999865  


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR  241 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  241 (258)
                       ++|+|+++||+|....+   .. --|.++..........++..+|.+++-|+..|+.
T Consensus       225 -~vk~gavVIDvGin~~~---gk-l~GDvd~~~~~~~a~~iTPVPGGVGp~T~a~L~~  277 (287)
T PRK14176        225 -MVKEGAVIFDVGITKEE---DK-VYGDVDFENVIKKASLITPVPGGVGPLTIAMLMK  277 (287)
T ss_pred             -HcCCCcEEEEecccccC---CC-ccCCcCHHHHHhhceEcCCCCCCChHHHHHHHHH
Confidence             57999999999975210   00 1122222222233334555667777666666655

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=99.39  E-value=2.4e-12  Score=114.38  Aligned_cols=196  Identities=15%  Similarity=0.175  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc--cCCCCCcchhhh---ccC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN--KAGPFKPSYYSL---KRS  102 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~  102 (258)
                      .++++.+..+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+...  ..+..+|+..++   .+.
T Consensus        83 ~el~~~I~~lN~-D~~V~GIlvq~PlP~~id~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~  160 (299)
T PLN02516         83 AELISKVHELNA-NPDVHGILVQLPLPKHINEEKILNEISL-EKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSR  160 (299)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEecCCCCCcCHHHHHhccCc-ccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHH
Confidence            568888999988 322 344443 88999988776666655 458999988777665433  334455666553   445


Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      ++.++.||+|+|||.+. +|+.++.+|...|++|++++..             ..++++.+++||+|+.+.|.++++..+
T Consensus       161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~~~~ADIvv~AvGk~~~i~~~  227 (299)
T PLN02516        161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESIVREADIVIAAAGQAMMIKGD  227 (299)
T ss_pred             hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCccCHH
Confidence            67789999999999999 9999999999999999999642             235788899999999999999999865


Q ss_pred             HHhcCCCCcEEEecCCCChhhchh--h-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDVN--S-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~~--~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      .   +|+|+++||+|....+....  . -.-|.++..........+...+|.+.+-|+.+|+.+-
T Consensus       228 ~---vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~  289 (299)
T PLN02516        228 W---IKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVSKVAGWITPVPGGVGPMTVAMLLKNT  289 (299)
T ss_pred             H---cCCCCEEEEeeccccCcccccCCCceEcCcChHHhhhhceEecCCCCCchHHHHHHHHHHH
Confidence            4   69999999999762111000  0 0112223233333344466678888887877777653

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.38  E-value=3e-12  Score=113.82  Aligned_cols=197  Identities=23%  Similarity=0.231  Sum_probs=137.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .|+-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        76 ~el~~~I~~lN~-D~~V~GIivq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~  153 (297)
T PRK14186         76 AEVEALIAQLNQ-DERVDGILLQLPLPKHLDEVPLLHAIDP-DKDADGLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQ  153 (297)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence            468888899988 322 344443 88999987765555555 458999988776665544444455665553   34467


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|||.+. +|+.++.+|...|++|++++..             ..++.+.+++||+|+.+.|.+++++.+. 
T Consensus       154 i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~-------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~-  219 (297)
T PRK14186        154 IDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSR-------------TQDLASITREADILVAAAGRPNLIGAEM-  219 (297)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccCCcCccCHHH-
Confidence            789999999999999 9999999999999999998542             2257888999999999999999998654 


Q ss_pred             hcCCCCcEEEecCCCChh-hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHSNTE-IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~-~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                        +|+|+++||+|....+ ..-+.---|.++..........+...+|.+.+-|+.+|+.+--
T Consensus       220 --ik~gavVIDvGin~~~~~~~~gkl~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~  279 (297)
T PRK14186        220 --VKPGAVVVDVGIHRLPSSDGKTRLCGDVDFEEVEPVAAAITPVPGGVGPMTVTMLLVNTV  279 (297)
T ss_pred             --cCCCCEEEEeccccccccccCCceeCCccHHHHHhhceEecCCCCCchHHHHHHHHHHHH
Confidence              6999999999976211 1000001122232233333444666778888877777776433

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.38  E-value=8e-13  Score=116.98  Aligned_cols=140  Identities=18%  Similarity=0.240  Sum_probs=108.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc-C---HHHHH------HhCCeeeeccCccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV-K---LNEVI------RTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~-~---l~e~~------~~aDvvi~~~~~~~  176 (258)
                      +|++|+|+|.|.||+.+++.++.+|++ |+++++++.+.+.+++.|++.. +   ..+.+      ...|+++.+++...
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~  199 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA  199 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence            789999999999999999999999996 8889999998888888887532 2   11221      14799999998887


Q ss_pred             cccHHHHhcCCCCcEEEecCCC--C--hhhchhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecC--CChhHHH
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS--N--TEIDVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRK--PKSRLYL  249 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~--~--~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~--~~~~~~~  249 (258)
                      .++ +.++.++++++++.+|..  .  .+.....+..+++++.++.... ++|.         .++.++.+  .+.++.+
T Consensus       200 ~~~-~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~~l~~~~~~~~~~~  269 (280)
T TIGR03366       200 AVR-ACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYEPRHLD---------QAVRFLAANGQRFPFEE  269 (280)
T ss_pred             HHH-HHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCCCHHHHH---------HHHHHHHhhCCCCCHHH
Confidence            776 789999999999999963  1  2344556777888888876543 3456         55666665  3677889


Q ss_pred             HHhhhcCC
Q psy16115        250 EILQTCPL  257 (258)
Q Consensus       250 ~~~~~~~~  257 (258)
                      .|+|+|||
T Consensus       270 ~it~~~~l  277 (280)
T TIGR03366       270 LVGKPFPL  277 (280)
T ss_pred             Hhhccccc
Confidence            99999997

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.38  E-value=2.9e-12  Score=113.09  Aligned_cols=192  Identities=19%  Similarity=0.280  Sum_probs=137.0

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc-cCCCCCcchhhh---ccCc
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN-KAGPFKPSYYSL---KRST  103 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~---~~~~  103 (258)
                      .+++..+..+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+... ..+..+|+..++   .+.+
T Consensus        74 ~~l~~~I~~lN~-D~~V~GIivq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y  151 (282)
T PRK14166         74 NELLALINTLNH-DDSVHGILVQLPLPDHICKDLILESIIS-SKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAY  151 (282)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHh
Confidence            568888888888 323 244443 88999988766555555 458999988776655444 334456666553   4456


Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~  182 (258)
                      +.++.||+|+|+|.+. +|+.++.+|...|++|++++...             .++.+.+++||+++.+.|.+++++++.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-------------~nl~~~~~~ADIvIsAvGkp~~i~~~~  218 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAGCVNLLRSDM  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEcCCCcCccCHHH
Confidence            7789999999999999 99999999999999999986432             357888999999999999999999664


Q ss_pred             HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                         +|+|+++||+|....+.  .. .-|.++..........++..+|.+.+-|+.+|+.+
T Consensus       219 ---vk~GavVIDvGin~~~~--gk-l~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N  272 (282)
T PRK14166        219 ---VKEGVIVVDVGINRLES--GK-IVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLEN  272 (282)
T ss_pred             ---cCCCCEEEEecccccCC--CC-eeCCCCHHHHHhhccEecCCCCCchHHHHHHHHHH
Confidence               69999999999762110  00 11223333333344446677788887777777664

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.37  E-value=3e-12  Score=112.93  Aligned_cols=192  Identities=20%  Similarity=0.200  Sum_probs=137.4

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCC-CCCcchhhh---ccCc
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG-PFKPSYYSL---KRST  103 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~---~~~~  103 (258)
                      .+++..++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+ ..+|+..++   .+.+
T Consensus        74 ~~l~~~I~~lN~-d~~V~GIivqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~  151 (282)
T PRK14182         74 AELLALIARLNA-DPAVHGILVQLPLPKHVDERAVLDAISP-AKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEA  151 (282)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHh
Confidence            468888888888 333 344443 88999988766555555 458999998777666555555 456666553   4456


Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~  182 (258)
                      +.++.||+++|+|.+. +|+.++.+|...|++|++++...             .++.+.+++||+++.+.|.+++++++.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-------------~nl~~~~~~ADIvI~AvGk~~~i~~~~  218 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-------------ADLAGEVGRADILVAAIGKAELVKGAW  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCHHH
Confidence            7789999999999999 99999999999999999985422             357888999999999999999998664


Q ss_pred             HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                         +|+|+++||+|......  .. --|.++..........++..+|.+.+-|+.+|+.+
T Consensus       219 ---ik~gaiVIDvGin~~~~--gk-l~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N  272 (282)
T PRK14182        219 ---VKEGAVVIDVGMNRLAD--GK-LVGDVEFAAAAARASAITPVPGGVGPMTRAMLLVN  272 (282)
T ss_pred             ---cCCCCEEEEeeceecCC--CC-eeCCCCHHHHHhhccEecCCCCCChHHHHHHHHHH
Confidence               69999999999762100  00 11222323333344446666788877777776654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.37  E-value=1e-12  Score=119.48  Aligned_cols=140  Identities=16%  Similarity=0.231  Sum_probs=107.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHHH---hCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVIR---TVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~---~aDvvi~~~~~~~~  177 (258)
                      +|++|+|+|+|.+|+..++.++..|+ +|+++++++++++.+++.|++..      ++.+...   ..|+++.|+|....
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~  248 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSS  248 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHH
Confidence            78999999999999999999999999 59999999999988888887532      2333332   27999999988766


Q ss_pred             ccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhhhc
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTC  255 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~  255 (258)
                      +. ..++.++++++++.+|..  ..+.....+..+++++.++....+.|.         .++.|+.+++.+....|+|++
T Consensus       249 ~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~---------~~~~l~~~g~i~~~~~i~~~~  318 (343)
T PRK09880        249 IN-TCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFN---------TAVSWLANGVINPLPLLSAEY  318 (343)
T ss_pred             HH-HHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeeccccHH---------HHHHHHHcCCCCchhheEEEE
Confidence            75 789999999999999976  233344445566777777654433344         566777777777777888888


Q ss_pred             CC
Q psy16115        256 PL  257 (258)
Q Consensus       256 ~~  257 (258)
                      ||
T Consensus       319 ~l  320 (343)
T PRK09880        319 PF  320 (343)
T ss_pred             EH
Confidence            76

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.36  E-value=4.5e-12  Score=112.11  Aligned_cols=191  Identities=19%  Similarity=0.199  Sum_probs=138.5

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.++.+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        75 ~~l~~~I~~lN~-d~~V~GIlvqlPLP~~id~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~  152 (286)
T PRK14184         75 EELEDLIAELNA-RPDIDGILLQLPLPKGLDSQRCLELIDP-AKDVDGFHPENMGRLALGLPGFRPCTPAGVMTLLERYG  152 (286)
T ss_pred             HHHHHHHHHHhC-CCcCceEEEecCCCCCCCHHHHHhccCc-ccCcccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence            568888899988 323 244443 89999988766555555 458999998877766655555566666663   34567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHh----CCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKG----LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~----~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      .++.||+++|||.+. +|+.++.+|..    .|++|+.++.+.             .++.+.+++||+|+.+.+.++++.
T Consensus       153 i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~~~~ADIVI~AvG~p~li~  219 (286)
T PRK14184        153 LSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEECREADFLFVAIGRPRFVT  219 (286)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCCCCcCC
Confidence            789999999999999 99999999998    789999987532             257888999999999999999998


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      .+.   +|+|+++||+|....+   .. --|.++..........++..++.+.+-|+-+|+.+
T Consensus       220 ~~~---vk~GavVIDVGi~~~~---~~-l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N  275 (286)
T PRK14184        220 ADM---VKPGAVVVDVGINRTD---DG-LVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVN  275 (286)
T ss_pred             HHH---cCCCCEEEEeeeeccC---CC-ccCCccHHHHHhhceEecCCCCCChHHHHHHHHHH
Confidence            665   4999999999976211   01 12333333333444446666777777777776664

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.36  E-value=4.3e-12  Score=112.49  Aligned_cols=197  Identities=17%  Similarity=0.219  Sum_probs=140.0

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.+..+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        75 ~el~~~I~~lN~-D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~~~  152 (293)
T PRK14185         75 EELLAKVRELNQ-DDDVDGFIVQLPLPKHISEQKVIEAIDY-RKDVDGFHPINVGRMSIGLPCFVSATPNGILELLKRYH  152 (293)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEecCCCCCCCHHHHHhccCc-ccCcCCCCHhhHHHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence            568888889988 323 344443 88999987766556555 458999998777666555555556666553   34457


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      .++.||+|+|||.+. +|+.++.+|...    +++|++++...             .++.+.+++||+++.+.|.++++.
T Consensus       153 i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~nl~~~~~~ADIvIsAvGkp~~i~  219 (293)
T PRK14185        153 IETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-------------KNLKKECLEADIIIAALGQPEFVK  219 (293)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-------------CCHHHHHhhCCEEEEccCCcCccC
Confidence            789999999999999 999999999887    68999985422             367888999999999999999998


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhchh--h-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDVN--S-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~~--~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ++   ++|+|+++||+|....+....  . -.-|.++..........++..+|.+.+-|+.+|+.+--
T Consensus       220 ~~---~vk~gavVIDvGin~~~~~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~  284 (293)
T PRK14185        220 AD---MVKEGAVVIDVGTTRVPDATRKSGFKLTGDVKFDEVAPKCSYITPVPGGVGPMTIVSLMKNTL  284 (293)
T ss_pred             HH---HcCCCCEEEEecCcccccccccCCCeeEcCCCHHHHHhhccEeCCCCCCchHHHHHHHHHHHH
Confidence            65   479999999999762110000  0 01123333334444455777778888888877776543

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.35  E-value=1.7e-11  Score=108.43  Aligned_cols=191  Identities=18%  Similarity=0.199  Sum_probs=133.7

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        77 ~el~~~I~~lN~-d~~V~GIlvqlPLP~~~~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~  154 (285)
T PRK10792         77 AELLALIDELNA-DPTIDGILVQLPLPAHIDNVKVLERIHP-DKDVDGFHPYNVGRLAQRIPLLRPCTPRGIMTLLERYG  154 (285)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccccCccChhhHhHHhCCCCCCCCCCHHHHHHHHHHcC
Confidence            578888999988 333 244443 88899987765555555 458999988777666554455556666553   34456


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++++|+|.|. +|+.++.+|...|++|++++...             .++.+.+++||+++.+.|.++++..   
T Consensus       155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvi~avG~p~~v~~---  218 (285)
T PRK10792        155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-------------KNLRHHVRNADLLVVAVGKPGFIPG---  218 (285)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-------------CCHHHHHhhCCEEEEcCCCcccccH---
Confidence            789999999999999 99999999999999999997532             2578889999999999999999985   


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR  241 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  241 (258)
                      +++|+|+++||+|....+.  .. .-|.++..........+...+|.+++-|+.+|+.
T Consensus       219 ~~vk~gavVIDvGin~~~~--gk-~~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~  273 (285)
T PRK10792        219 EWIKPGAIVIDVGINRLED--GK-LVGDVEFETAAERASWITPVPGGVGPMTVATLLE  273 (285)
T ss_pred             HHcCCCcEEEEcccccccC--CC-cCCCcCHHHHHhhccCcCCCCCCChHHHHHHHHH
Confidence            4579999999999652110  00 1122222222222333555566666666665554

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.35  E-value=5.1e-12  Score=112.12  Aligned_cols=199  Identities=17%  Similarity=0.185  Sum_probs=139.2

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc--CCCCCcchhh---hccC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK--AGPFKPSYYS---LKRS  102 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~---~~~~  102 (258)
                      .+++..++.+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+....  .+..+|+..+   +.+.
T Consensus        76 ~~l~~~I~~lN~-d~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~  153 (294)
T PRK14187         76 SSLIEKINELNN-DDSVHGILVQLPVPNHIDKNLIINTIDP-EKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKT  153 (294)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHH
Confidence            568888999988 322 344443 88999988765555555 4589999887766554433  2344556555   3445


Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      ++.++.||+++|+|.+. +|+.++.+|...|++|++++...             .++.+.+++||+++.+.|.++++.++
T Consensus       154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-------------~~l~~~~~~ADIvVsAvGkp~~i~~~  220 (294)
T PRK14187        154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-------------RDLADYCSKADILVAAVGIPNFVKYS  220 (294)
T ss_pred             hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCccCHH
Confidence            67789999999999999 99999999999999999986432             35788899999999999999999866


Q ss_pred             HHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                      .   +|+|+++||+|....+..-..-.-|.++..........++..+|.+.+-|+.+|+.+--.+
T Consensus       221 ~---ik~gaiVIDVGin~~~~~~~~kl~GDvd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a  282 (294)
T PRK14187        221 W---IKKGAIVIDVGINSIEEGGVKKFVGDVDFAEVKKKASAITPVPGGVGPMTIAFLMVNTVIA  282 (294)
T ss_pred             H---cCCCCEEEEecccccCCCCccceeCCccHHHHhhhccEecCCCCCChHHHHHHHHHHHHHH
Confidence            5   6899999999976211000000112223233333444466677888888887777654433

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.35  E-value=1.5e-11  Score=108.58  Aligned_cols=192  Identities=19%  Similarity=0.219  Sum_probs=136.6

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..+..+|. |.+ .++-|. |+|+++++...--++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        74 ~el~~~I~~lN~-D~~V~GIlvqlPLp~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~  151 (282)
T PRK14169         74 ADLLAKVAELNH-DPDVDAILVQLPLPAGLDEQAVIDAIDP-DKDVDGFSPVSVGRLWANEPTVVASTPYGIMALLDAYD  151 (282)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhhcCc-ccCcccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhC
Confidence            578888899988 333 244443 88999988766555555 458999988777666655555566666663   34467


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|||.+. +|+.++.+|...|++|++++...             .++.+.+++||+|+.+.|.+++++.+  
T Consensus       152 i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG~p~~i~~~--  216 (282)
T PRK14169        152 IDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-------------RNLKQLTKEADILVVAVGVPHFIGAD--  216 (282)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhhCCEEEEccCCcCccCHH--
Confidence            789999999999999 99999999999999999985422             25788899999999999999999866  


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                       ++|+|+++||+|......  .. --|.++..........++..+|.+.+-|+.+|+.+
T Consensus       217 -~vk~GavVIDvGin~~~~--gk-l~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N  271 (282)
T PRK14169        217 -AVKPGAVVIDVGISRGAD--GK-LLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQ  271 (282)
T ss_pred             -HcCCCcEEEEeeccccCC--CC-eeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHH
Confidence             479999999999762110  00 01112222222333445666777777777666653

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.35  E-value=1.8e-11  Score=108.31  Aligned_cols=195  Identities=19%  Similarity=0.178  Sum_probs=138.1

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        73 ~el~~~I~~lN~-D~~V~GIlvqlPLP~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~  150 (287)
T PRK14173         73 EELLELIARLNA-DPEVDGILVQLPLPPHIDFQRVLEAIDP-LKDVDGFHPLNVGRLWMGGEALEPCTPAGVVRLLKHYG  150 (287)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhhhHHHhcCCCCCCCCCHHHHHHHHHHcC
Confidence            467888888888 322 244443 88899988766555555 458999998777666555555556666653   44567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|||.+. +|+.++.+|...|++|++++...             .++.+.+++||+|+.+.|.+++++.+. 
T Consensus       151 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~~~~-  216 (287)
T PRK14173        151 IPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-------------QDLPAVTRRADVLVVAVGRPHLITPEM-  216 (287)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCHHH-
Confidence            789999999999999 99999999999999999986422             257888999999999999999998665 


Q ss_pred             hcCCCCcEEEecCCCChhhchhh-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNS-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                        +|+|+++||+|.......-.. ..-|.++ .........+...++.+.+-|+.+|+.+-
T Consensus       217 --vk~GavVIDVGin~~~~~~gk~~l~GDVd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N~  274 (287)
T PRK14173        217 --VRPGAVVVDVGINRVGGNGGRDILTGDVH-PEVAEVAGALTPVPGGVGPMTVAMLMANT  274 (287)
T ss_pred             --cCCCCEEEEccCccccCCCCceeeecccc-HhHHhhCcEEecCCCChhHHHHHHHHHHH
Confidence              699999999997621100000 0112223 22333344467777888888887777643

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.34  E-value=5.9e-12  Score=111.00  Aligned_cols=192  Identities=17%  Similarity=0.206  Sum_probs=138.8

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.+..+|. |.+ .|+-|. |+|+++++...--++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        70 ~el~~~I~~lN~-D~~V~GIlvqlPLp~~i~~~~v~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~  147 (279)
T PRK14178         70 RTVLERIRRLNE-DPDINGILVQLPLPKGVDTERVIAAILP-EKDVDGFHPLNLGRLVSGLPGFAPCTPNGIMTLLHEYK  147 (279)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhccCc-ccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHcC
Confidence            578899999988 323 344443 89999988766555555 458999988777666655555556666663   34467


Q ss_pred             cccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++|.|+|.| .+|+.++.++...|++|++++.+.             .++.+.+++||++|.+.+.++++.++. 
T Consensus       148 i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~~~~ADIvI~Avgk~~lv~~~~-  213 (279)
T PRK14178        148 ISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAELRQADILVSAAGKAGFITPDM-  213 (279)
T ss_pred             CCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHHHhhCCEEEECCCcccccCHHH-
Confidence            78999999999999 599999999999999999987543             257888999999999999889998766 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                        +|+|+++||+|....+    .-.-|.++..........++..+|.+++-|+.+|+.+-
T Consensus       214 --vk~GavVIDVgi~~~~----gkl~GDvdf~~~~~~a~~iTPVPGGVGp~T~a~L~~N~  267 (279)
T PRK14178        214 --VKPGATVIDVGINQVN----GKLCGDVDFDAVKEIAGAITPVPGGVGPMTIATLMENT  267 (279)
T ss_pred             --cCCCcEEEEeeccccC----CCCcCCccHHHHHhhccCcCCCCCCCHHHHHHHHHHHH
Confidence              5999999999975210    00112223223333334466667888877887777643

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.34  E-value=5.8e-12  Score=111.98  Aligned_cols=197  Identities=17%  Similarity=0.166  Sum_probs=138.1

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..+..+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        75 ~el~~~I~~lN~-D~~V~GIlvq~PLP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~  152 (297)
T PRK14167         75 EELYDTIDELNA-DEDVHGILVQMPVPDHVDDREVLRRIDP-AKDVDGFHPENVGRLVAGDARFKPCTPHGIQKLLAAAG  152 (297)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEcCCCCCCCCHHHHHhccCc-ccCcccCChhhhHHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence            568888899988 322 344443 89999988766555555 458999988777666554555555666553   34467


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      .++.||+|+|||.+. +|+.++.+|...    +++|++++...             .++.+.+++||+|+.|.|.+++++
T Consensus       153 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~  219 (297)
T PRK14167        153 VDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT-------------DDLAAKTRRADIVVAAAGVPELID  219 (297)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCccC
Confidence            789999999999999 999999999876    79999985322             257888999999999999999998


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhch--hhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDV--NSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~--~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      .+   ++|+|+++||+|....+...  ..---|.++..........++..+|.+.+-|+.+|+.+--
T Consensus       220 ~~---~ik~gaiVIDvGin~~~~~~~~g~kl~GDVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~  283 (297)
T PRK14167        220 GS---MLSEGATVIDVGINRVDADTEKGYELVGDVEFESAKEKASAITPVPGGVGPMTRAMLLYNTV  283 (297)
T ss_pred             HH---HcCCCCEEEEccccccCcccccCCceeecCcHHHHHhhceEecCCCCCchHHHHHHHHHHHH
Confidence            65   47999999999976211000  0001122233333334444667778888777777776543

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.34  E-value=1.8e-11  Score=108.25  Aligned_cols=193  Identities=23%  Similarity=0.253  Sum_probs=137.3

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.+..+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        76 ~~l~~~I~~lN~-d~~V~GIivqlPlp~~i~~~~i~~~I~p-~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~  153 (284)
T PRK14179         76 EELLDLIERYNQ-DPTWHGILVQLPLPKHINEEKILLAIDP-KKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYN  153 (284)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEcCCCCCCCCHHHHHhccCc-cccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhC
Confidence            568888898988 322 244343 88899987776555555 458999998777666655555556666653   34467


Q ss_pred             cccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|||. |.+|+.+|.+|...|++|++++..             ..++.+.+++||+|+.+.+.++.+..+  
T Consensus       154 i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~~~~ADIVI~avg~~~~v~~~--  218 (284)
T PRK14179        154 VELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEVARKADILVVAIGRGHFVTKE--  218 (284)
T ss_pred             CCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEEEecCccccCCHH--
Confidence            7899999999999 889999999999999999998321             126788899999999999999999854  


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                       ++|+|+++||+|......  .. --|.++..........++..+|.+.+-|+.+|+.+-
T Consensus       219 -~ik~GavVIDvgin~~~~--gk-l~GDVdf~~v~~~a~~iTPVPGGVGp~T~a~L~~N~  274 (284)
T PRK14179        219 -FVKEGAVVIDVGMNRDEN--GK-LIGDVDFDEVAEVASYITPVPGGVGPMTITMLMEQT  274 (284)
T ss_pred             -HccCCcEEEEecceecCC--CC-eecCccHHHHHhhccEecCCCCCchHHHHHHHHHHH
Confidence             389999999999762110  00 112223233333344466667888877777776643

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.33  E-value=2e-11  Score=107.64  Aligned_cols=192  Identities=19%  Similarity=0.224  Sum_probs=134.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        75 ~~l~~~I~~lN~-D~~V~GIlvq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~lL~~~~  152 (281)
T PRK14183         75 KEILETIAMMNN-NPNIDGILVQLPLPKHIDTTKILEAIDP-KKDVDGFHPYNVGRLVTGLDGFVPCTPLGVMELLEEYE  152 (281)
T ss_pred             HHHHHHHHHHhC-CCccCeEEEeCCCCCCCCHHHHHhccCc-hhcccccChhhhhHHhcCCCCCCCCcHHHHHHHHHHcC
Confidence            568888899988 323 344443 88899987765555555 458899988776666555555556666553   44567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+|+|+|.|. +|+.++.+|...|++|++++...             .++.+.+++||+|+.++|.++++.++. 
T Consensus       153 i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T-------------~~l~~~~~~ADIvV~AvGkp~~i~~~~-  218 (281)
T PRK14183        153 IDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT-------------KDLKAHTKKADIVIVGVGKPNLITEDM-  218 (281)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCcccccCHHH-
Confidence            789999999999996 99999999999999999885321             256788999999999999999998664 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                        +|+|+++||+|....+.  .. --|.++..........+...++.+.+-|+.+|+.+
T Consensus       219 --vk~gavvIDvGin~~~~--gk-l~GDVd~~~~~~~a~~iTPVPGGVGpvT~a~L~~N  272 (281)
T PRK14183        219 --VKEGAIVIDIGINRTED--GR-LVGDVDFENVAKKCSYITPVPGGVGPMTIAMLLSN  272 (281)
T ss_pred             --cCCCcEEEEeeccccCC--CC-eECCccHHHHHhhceEecCCCCCChHHHHHHHHHH
Confidence              69999999999652110  00 11222222233333445666777777776666653

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.33  E-value=1.7e-11  Score=108.52  Aligned_cols=193  Identities=20%  Similarity=0.224  Sum_probs=137.6

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc-CCCCCcchhhh---ccCc
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK-AGPFKPSYYSL---KRST  103 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~  103 (258)
                      .+++..+..+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+.... .+..+|...++   .+.+
T Consensus        76 ~~l~~~I~~LN~-D~~V~GIlvqlPLP~~id~~~i~~~I~p-~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y  153 (288)
T PRK14171         76 NDLISKINELNL-DNEISGIIVQLPLPSSIDKNKILSAVSP-SKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKY  153 (288)
T ss_pred             HHHHHHHHHHcC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHh
Confidence            568888899988 333 244443 88899988776666665 3588999887766665443 45556666553   4456


Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~  182 (258)
                      +.++.||+++|||.+. +|+.++.+|...|++|++++..             ..++.+.+++||+++.+.|.++++.++.
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------T~~L~~~~~~ADIvV~AvGkp~~i~~~~  220 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------THNLSSITSKADIVVAAIGSPLKLTAEY  220 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccCCCCccCHHH
Confidence            7789999999999999 9999999999999999998642             2357888999999999999999998664


Q ss_pred             HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                         +|+|+++||+|....+.  .. .-|.++..........++..+|.+.+-|+.+|+.+-
T Consensus       221 ---vk~GavVIDvGin~~~~--gk-l~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~  275 (288)
T PRK14171        221 ---FNPESIVIDVGINRISG--NK-IIGDVDFENVKSKVKYITPVPGGIGPMTIAFLLKNT  275 (288)
T ss_pred             ---cCCCCEEEEeeccccCC--CC-eECCccHHHHHhhceEeCCCCCCcHHHHHHHHHHHH
Confidence               69999999999652100  00 112233233333344456668888877777777643

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.32  E-value=2.8e-11  Score=106.98  Aligned_cols=191  Identities=23%  Similarity=0.236  Sum_probs=137.0

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..+..+|. |.+ .++-|. |+|+++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        76 ~el~~~I~~lN~-D~~V~GIlvqlPlP~~id~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~  153 (284)
T PRK14193         76 EELNAVIDELNA-DPACTGYIVQLPLPKHLDENAVLERIDP-AKDADGLHPTNLGRLVLNEPAPLPCTPRGIVHLLRRYD  153 (284)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhcCCc-ccCccCCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhC
Confidence            568888899988 333 344443 88899988766555555 458999988776666555555556666653   34567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHh--CCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKG--LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~--~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      .++.||+++|+|.+. +|+.++.+|..  .|++|++++..             ..++.+.+++||+++.+.|.++++..+
T Consensus       154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~-------------T~~l~~~~k~ADIvV~AvGkp~~i~~~  220 (284)
T PRK14193        154 VELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG-------------TRDLAAHTRRADIIVAAAGVAHLVTAD  220 (284)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC-------------CCCHHHHHHhCCEEEEecCCcCccCHH
Confidence            789999999999998 99999999988  78999998643             236788899999999999999999866


Q ss_pred             HHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      .   +|+|+++||+|.....   +.-.-|.++ .........+...+|.+.+-|+.+|+.+
T Consensus       221 ~---ik~GavVIDvGin~~~---~gkl~GDvd-~~v~~~a~~iTPVPGGVGp~T~a~L~~N  274 (284)
T PRK14193        221 M---VKPGAAVLDVGVSRAG---DGKLVGDVH-PDVWEVAGAVSPNPGGVGPMTRAFLLTN  274 (284)
T ss_pred             H---cCCCCEEEEccccccC---CCcEEeecC-HhHHhhCCEEeCCCCChhHHHHHHHHHH
Confidence            4   6999999999976210   000112222 2233334446777788877777777664

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.32  E-value=5.3e-12  Score=113.08  Aligned_cols=90  Identities=24%  Similarity=0.374  Sum_probs=76.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc---CccccccHHH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH  182 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~---~~~~~i~~~~  182 (258)
                      .|+|+||+|||+|.||+.+|+.|+.+|++|+++++.......+...|+...+++++++.||+|+++.   .+.++++++.
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~ei   92 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAEV   92 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHHH
Confidence            3699999999999999999999999999999998764444456667887779999999999999984   4567888789


Q ss_pred             HhcCCCCcEEEec
Q psy16115        183 MDKMKNGCVVCNM  195 (258)
Q Consensus       183 l~~~k~g~~ivnv  195 (258)
                      +..||+|++++..
T Consensus        93 l~~MK~GaiL~f~  105 (335)
T PRK13403         93 EENLREGQMLLFS  105 (335)
T ss_pred             HhcCCCCCEEEEC
Confidence            9999999988754

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.32  E-value=8.6e-12  Score=110.90  Aligned_cols=195  Identities=19%  Similarity=0.240  Sum_probs=137.0

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc--CCCCCcchhhh---ccC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK--AGPFKPSYYSL---KRS  102 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~---~~~  102 (258)
                      .++++.++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+....  .+..+|+..++   .+.
T Consensus        77 ~el~~~I~~lN~-D~~V~GIivqlPlP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~  154 (297)
T PRK14168         77 EELLALIDKYNN-DDSIHGILVQLPLPKHINEKKVLNAIDP-DKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVR  154 (297)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-cccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHH
Confidence            568888899988 333 344443 88899988766555555 4589999887766554433  34455665553   345


Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccc
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      ++.++.|++|+|||.+. +|+.++.+|...    +++|++++...             .++.+.+++||+|+.++|.+++
T Consensus       155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T-------------~~l~~~~~~ADIvVsAvGkp~~  221 (297)
T PRK14168        155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS-------------KNLARHCQRADILIVAAGVPNL  221 (297)
T ss_pred             hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC-------------cCHHHHHhhCCEEEEecCCcCc
Confidence            67789999999999999 999999999987    78999985422             3578889999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEecCCCCh-hhchh-h-hcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHSNT-EIDVN-S-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~~~-~~~~~-~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      ++.+.   +|+|+++||+|.... +..-+ . ..-|.++..........++..++.+.+-|+.+|+.+
T Consensus       222 i~~~~---ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe~v~~~a~~iTPVPGGVGp~T~a~L~~N  286 (297)
T PRK14168        222 VKPEW---IKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKEIAGKITPVPGGVGPMTIAMLMRN  286 (297)
T ss_pred             cCHHH---cCCCCEEEecCCCccCccccCCCcceeccccHHHHHhhccEecCCCCCchHHHHHHHHHH
Confidence            98664   699999999997621 10000 0 012333333333444556777788887777777664

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.32  E-value=2.9e-11  Score=107.78  Aligned_cols=198  Identities=20%  Similarity=0.191  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..+..+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+.....+..+|+..++   .+.++
T Consensus        76 ~el~~~i~~lN~-d~~V~GIlvq~Plp~~~~~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~  153 (296)
T PRK14188         76 AELLALIARLNA-DPAIHGILVQLPLPKHLDSEAVIQAIDP-EKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVH  153 (296)
T ss_pred             HHHHHHHHHHhC-CCCCcEEEEeCCCCCCCCHHHHHhccCc-ccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhC
Confidence            568888888888 322 244443 88899987765555555 458999988777666555555556666654   34456


Q ss_pred             cccCCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEe-CChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115        105 VMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITE-IDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       105 ~~l~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d-~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~  182 (258)
                      .++.||+|+||| .|.+|+.+|.+|...|++|++++ +++              ++++.+++||+|+.|++.++.+.+. 
T Consensus       154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------~l~e~~~~ADIVIsavg~~~~v~~~-  218 (296)
T PRK14188        154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------DLPAVCRRADILVAAVGRPEMVKGD-  218 (296)
T ss_pred             CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhhcchh-
Confidence            789999999999 77799999999999999999995 432              4678889999999999999988744 


Q ss_pred             HhcCCCCcEEEecCCCChhhchh--h--hcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115        183 MDKMKNGCVVCNMGHSNTEIDVN--S--LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~~~~~--~--l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                        ++|+|+++||+|....+..-.  .  ---|.++..........++..+|.+.+-|+.+|+.+--.+
T Consensus       219 --~lk~GavVIDvGin~~~~~~~~~g~~~l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a  284 (296)
T PRK14188        219 --WIKPGATVIDVGINRIPAPEKGEGKTRLVGDVAFAEAAEVAGAITPVPGGVGPMTIACLLANTLTA  284 (296)
T ss_pred             --eecCCCEEEEcCCcccCCccccCCCceeeCCCCHHHHHhhccEecCCCCChhHHHHHHHHHHHHHH
Confidence              389999999999762110000  0  0113333333444445577778888888888777754433

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.32  E-value=3.3e-11  Score=106.41  Aligned_cols=191  Identities=18%  Similarity=0.234  Sum_probs=134.8

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc-cCCCCCcchhhh---ccCc
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN-KAGPFKPSYYSL---KRST  103 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~---~~~~  103 (258)
                      .+++..++.+|. |.+ .++-|. |+|+++++...--++.+ ..++++++..+...+... ..+..+|+..++   .+.+
T Consensus        75 ~el~~~I~~lN~-D~~V~GIivq~PlP~~i~~~~i~~~I~p-~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y  152 (282)
T PRK14180         75 SELLELIDQLNN-DSSVHAILVQLPLPAHINKNNVIYSIKP-EKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREY  152 (282)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEcCCCCCCCCHHHHHhhcCc-cccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHh
Confidence            578888999988 323 244443 88999987765555555 458999988776655443 344456666553   3446


Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~  182 (258)
                      +.++.||+|+|+|.+. +|+.++.+|...|++|++++...             .++.+.+++||+++.+.|.++++.++ 
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-------------~dl~~~~k~ADIvIsAvGkp~~i~~~-  218 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGKPNFITAD-  218 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHhhhcCEEEEccCCcCcCCHH-
Confidence            7789999999999999 99999999999999999996432             25778899999999999999999865 


Q ss_pred             HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                        ++|+|+++||+|..-.+   .. --|.++..........++..+|.+.+-|+.+|+.+
T Consensus       219 --~vk~gavVIDvGin~~~---gk-l~GDvd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N  272 (282)
T PRK14180        219 --MVKEGAVVIDVGINHVD---GK-IVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYN  272 (282)
T ss_pred             --HcCCCcEEEEecccccC---Cc-eeCCcCHHHHHhhccEeccCCCChhHHHHHHHHHH
Confidence              46999999999975211   00 11222222222333446666777777777766654

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=99.31  E-value=2.7e-11  Score=109.69  Aligned_cols=195  Identities=19%  Similarity=0.191  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc--cCCCCCcchhhh---ccC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN--KAGPFKPSYYSL---KRS  102 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~  102 (258)
                      .++++.++.+|. |.+ .++-|. |+|.++++...--++.+ ..++++++..+...+...  ..+..+|...++   .+.
T Consensus       147 ~ell~~I~~LN~-D~~V~GIlVQlPLP~~id~~~i~~aI~P-~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~  224 (364)
T PLN02616        147 QEVLKFISGFNN-DPSVHGILVQLPLPSHMDEQNILNAVSI-EKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHR  224 (364)
T ss_pred             HHHHHHHHHHcC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHH
Confidence            468888888988 433 344443 88999988766555555 458999988777665543  344456666553   344


Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      ++.++.||+|+|||.+. +|+.++.+|...|++|++++..             ..++.+.+++|||||.+.|.+++++++
T Consensus       225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~-------------T~nl~~~~r~ADIVIsAvGkp~~i~~d  291 (364)
T PLN02616        225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITREADIIISAVGQPNMVRGS  291 (364)
T ss_pred             hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCcCCHH
Confidence            67789999999999999 9999999999999999998542             236788899999999999999999866


Q ss_pred             HHhcCCCCcEEEecCCCChhhch---hhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDV---NSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~---~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      .   +|+|+++||+|....+..-   ..---|.++..........++..+|.+.+-|+.+|+.+
T Consensus       292 ~---vK~GAvVIDVGIn~~~~~~~~~g~klvGDVdfe~v~~~as~ITPVPGGVGpmTva~Ll~N  352 (364)
T PLN02616        292 W---IKPGAVVIDVGINPVEDASSPRGYRLVGDVCYEEACKVASAVTPVPGGVGPMTIAMLLSN  352 (364)
T ss_pred             H---cCCCCEEEeccccccccccccCCCeEEecCcHHHHHhhccccCCCCCchHHHHHHHHHHH
Confidence            4   6999999999976211000   00011223333333344456777787777777777664

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=99.31  E-value=3.4e-11  Score=108.57  Aligned_cols=195  Identities=18%  Similarity=0.166  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc--cCCCCCcchhhh---ccC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN--KAGPFKPSYYSL---KRS  102 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~  102 (258)
                      .+++..++.+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+...  ..+..+|...++   .+.
T Consensus       130 ~ell~~I~~lN~-D~~V~GIlVQlPLP~hid~~~i~~~I~p-~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~  207 (345)
T PLN02897        130 GQILSALRKFNE-DTSIHGILVQLPLPQHLDESKILNMVRL-EKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIR  207 (345)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHH
Confidence            468889999988 433 344443 88999988766555555 458999988777666442  234456666553   344


Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      ++.++.||+++|||.+. +|+.++.+|...|++|++++...             .++.+.+++|||||.+.|.+++++.+
T Consensus       208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-------------~nl~~~~~~ADIvIsAvGkp~~v~~d  274 (345)
T PLN02897        208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-------------KDPEQITRKADIVIAAAGIPNLVRGS  274 (345)
T ss_pred             hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHHhhCCEEEEccCCcCccCHH
Confidence            67789999999999999 99999999999999999986422             25788899999999999999999866


Q ss_pred             HHhcCCCCcEEEecCCCChhhch---hhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDV---NSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~---~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      .   +|+|+++||+|....+...   ..---|.++..........+...+|.+.+-|+.+|+.+
T Consensus       275 ~---vk~GavVIDVGin~~~~~~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N  335 (345)
T PLN02897        275 W---LKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCN  335 (345)
T ss_pred             H---cCCCCEEEEccccccccccccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHH
Confidence            4   6999999999976211100   00011222222222333445666777777777776664

>KOG0067|consensus

Probab=99.30  E-value=4.1e-12  Score=113.98  Aligned_cols=196  Identities=15%  Similarity=0.195  Sum_probs=139.9

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccC--cCcccCCCEEEEEcCchHHH
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRS--TDVMFGGKQVVLCGYGEVGK  122 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~l~g~~V~IiG~G~IG~  122 (258)
                      +.++.|+++|...-+++|+-++..++..++.-. -.+   ...+.|.|...+......  ......|.+.+++|+|++|+
T Consensus       116 eL~iavC~ip~~~Ve~~a~stl~hIl~l~rrnt-w~c---q~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~  191 (435)
T KOG0067|consen  116 ELGIAVCNIPSDAVEETADSTLCHILNLYRRNT-WLC---QALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQ  191 (435)
T ss_pred             hheeeeecccchhHHHHHHHHHHHHHhhhcccc-hhh---hhhcccceeechhhhhhhhhccccccccceeeeccccccc
Confidence            447889999999888888876655543333211 001   112334433222111000  01125899999999999999


Q ss_pred             HHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCC
Q psy16115        123 GCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       123 ~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      .++..+++||..|+.||.....-. .+.+|.. +.++.+++-++|.+.++    ..+.+.++.-.++.|+.|+.++|.++
T Consensus       192 av~~~A~afg~~~ifydp~~~~g~-~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~  270 (435)
T KOG0067|consen  192 AVALRAKAFGFVVIFYDPYLIDGI-DKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTAR  270 (435)
T ss_pred             eehhhhhcccceeeeecchhhhhh-hhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecc
Confidence            999999999999999987654321 1223443 34688889999999997    35778898788999999999999999


Q ss_pred             C---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhh
Q psy16115        198 S---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQ  253 (258)
Q Consensus       198 ~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~  253 (258)
                      +   |++++-++|++|+++...      .+.+..+.++....+  +..||+++|+++.-
T Consensus       271 gglvdekaLaqaLk~G~i~~aa------~~~~~~~~l~d~pn~--ic~~~ta~~~e~~~  321 (435)
T KOG0067|consen  271 GGLVDEKALAQALKSGRIRGAA------PRSFKQGPLKDAPNL--ICTPHTAWYSEAAS  321 (435)
T ss_pred             cccCChHHHHhhhccCceeccc------CcccccccccCCCCC--CCCcccchhhHHHH
Confidence            9   899999999999987654      344667778877654  78899999998753

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.29  E-value=5.1e-11  Score=105.41  Aligned_cols=195  Identities=19%  Similarity=0.242  Sum_probs=134.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc-CCCCCcchhhh---ccCc
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK-AGPFKPSYYSL---KRST  103 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~  103 (258)
                      .+++..++.+|. |.+ .|+-|. |+|.++++...-.++.+ ..++++++..+...+.... .+..+|+..++   .+.+
T Consensus        70 ~el~~~I~~lN~-d~~V~GIlvqlPlP~~i~~~~i~~~I~p-~KDVDGl~p~n~g~l~~g~~~~~~PcTp~avi~lL~~~  147 (287)
T PRK14181         70 SDILKLIHRLNN-DPNIHGILVQLPLPKHLDAQAILQAISP-DKDVDGLHPVNMGKLLLGETDGFIPCTPAGIIELLKYY  147 (287)
T ss_pred             HHHHHHHHHHhC-CCCCCeEEEcCCCCCCcCHHHHHhccCc-ccCcccCChhhHHHHhcCCCCCCCCCCHHHHHHHHHHh
Confidence            568888999988 333 344443 89999988766555555 4589999887766554443 34455665553   3446


Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccc
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i  178 (258)
                      +.++.||+|+|||.+. +|+.++.+|...    +++|++++...             .++.+.+++||+|+.+.|.++++
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T-------------~~l~~~~~~ADIvV~AvG~p~~i  214 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS-------------ENLTEILKTADIIIAAIGVPLFI  214 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCcc
Confidence            7789999999999999 999999999988    78999986422             25788899999999999999999


Q ss_pred             cHHHHhcCCCCcEEEecCCCChhhchhh--hcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        179 TREHMDKMKNGCVVCNMGHSNTEIDVNS--LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~~~~~~~~~--l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      .++.   +|+|+++||+|.......-..  ---|.++..........++..+|.+.+-|+.+|+.+
T Consensus       215 ~~~~---ik~GavVIDvGin~~~~~~~~g~kl~GDVd~e~~~~~a~~iTPVPGGVGp~T~a~L~~N  277 (287)
T PRK14181        215 KEEM---IAEKAVIVDVGTSRVPAANPKGYILVGDVDFNNVVPKCRAITPVPGGVGPMTVAMLMRN  277 (287)
T ss_pred             CHHH---cCCCCEEEEecccccccccCCCCeeEeccchHHHHhhcccccCCCCchHHHHHHHHHHH
Confidence            8664   699999999997621100000  011222222233333446666777777777666654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.27  E-value=1.1e-11  Score=117.92  Aligned_cols=138  Identities=20%  Similarity=0.241  Sum_probs=100.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--CH---------------HH-------H-
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KL---------------NE-------V-  161 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--~l---------------~e-------~-  161 (258)
                      ..+++|+|+|+|.+|+..++.++.+|++|+++|+++.+++.+.++|++..  +.               ++       . 
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            47999999999999999999999999999999999999999989887632  11               01       1 


Q ss_pred             ---HHhCCeeeeccCcc-----ccccHHHHhcCCCCcEEEecCCC---Chhhc--hhhhcC-CCceeeeeccCcceeecC
Q psy16115        162 ---IRTVDIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGHS---NTEID--VNSLRT-PDLTWEKVRSQVDHVIWP  227 (258)
Q Consensus       162 ---~~~aDvvi~~~~~~-----~~i~~~~l~~~k~g~~ivnvg~~---~~~~~--~~~l~~-~~i~~~~~~~~~~~~~~~  227 (258)
                         ++++|++|+|++.+     .++.++.++.||+|++++++|..   +.+..  .+.+.. +++++.++...+.+|.. 
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~-  321 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPT-  321 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHH-
Confidence               13589999998753     36667999999999999999973   22222  233443 67888887666555442 


Q ss_pred             CCccCCCceeEEecCCChhHHHHHh
Q psy16115        228 DVNLKNNTVIDLFRKPKSRLYLEIL  252 (258)
Q Consensus       228 ~~~l~~~~~~~l~~~~~~~~~~~~~  252 (258)
                             +...|+.++..++...|+
T Consensus       322 -------~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        322 -------QSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             -------HHHHHHHhCCccHHHHhc
Confidence                   234444445555555554

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.27  E-value=2.6e-11  Score=107.91  Aligned_cols=196  Identities=20%  Similarity=0.265  Sum_probs=135.4

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc--CCCCCcchhhh---ccC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK--AGPFKPSYYSL---KRS  102 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~---~~~  102 (258)
                      .++++.++.+|. |.+ .++-|. |+|.++++...-.++.+ ..++++++..+...+....  .+..+|+..++   .+.
T Consensus        75 ~el~~~I~~lN~-D~~V~GIlvq~Plp~~id~~~i~~~I~p-~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~  152 (295)
T PRK14174         75 EHLLKKIEDLNN-DPDVHGILVQQPLPKQIDEFAVTLAIDP-AKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGR  152 (295)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCCCCCCHHHHHhcCCc-cccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHH
Confidence            578889999988 322 244443 88999988866555555 4589999877665554332  34455666553   344


Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHh----CCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccc
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKG----LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~----~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      ++.++.||+|+|||.+. +|+.++.+|..    .|++|+.++.+.             .++.+.+++||++|.+.+.+++
T Consensus       153 y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~~~~ADIvI~Avg~~~l  219 (295)
T PRK14174        153 YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSYTRQADILIAAIGKARF  219 (295)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCccCc
Confidence            57789999999999999 99999999987    688999986543             2478889999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEecCCCChhhchh--h-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHSNTEIDVN--S-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~~~~~~~~--~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      +..+.+   |+|+++||+|....+....  . -.-|.++..........++..+|.+.+-|+.+|+.+-
T Consensus       220 i~~~~v---k~GavVIDVgi~~~~~~~~~~g~kl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~Nl  285 (295)
T PRK14174        220 ITADMV---KPGAVVIDVGINRIEDPSTKSGYRLVGDVDYEGVSAKASAITPVPGGVGPMTIAMLLKNT  285 (295)
T ss_pred             cCHHHc---CCCCEEEEeeccccccccccCCCceECCcCHHHHHhhccEecCCCCCchHHHHHHHHHHH
Confidence            987764   9999999999762110000  0 0112223223333344466667888877777777643

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.24  E-value=1.9e-11  Score=111.22  Aligned_cols=139  Identities=13%  Similarity=0.147  Sum_probs=100.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CC-CEEEEEeCChhhHHHHHhCCCcccCHHHHHH--hCCeeeeccC---ccccccH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LG-CVIYITEIDPICALQACMDGFSVVKLNEVIR--TVDIVVTATG---NKNVVTR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G-~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~--~aDvvi~~~~---~~~~i~~  180 (258)
                      .|++|+|+|+|.||+.+++.++. +| .+|+++|+++.+++.+++.+.... .++..+  +.|+++.++|   +...++ 
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~-~~~~~~~~g~d~viD~~G~~~~~~~~~-  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL-IDDIPEDLAVDHAFECVGGRGSQSAIN-  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee-hhhhhhccCCcEEEECCCCCccHHHHH-
Confidence            68999999999999999999986 55 579999999988877766554321 222222  4799999998   445665 


Q ss_pred             HHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCC---ChhHHHHHhhh
Q psy16115        181 EHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKP---KSRLYLEILQT  254 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~~~~~  254 (258)
                      +.++.++++++++.+|..  +.+.....+..+++++.++.... ++|.         .++.++.++   +..+...|+|+
T Consensus       241 ~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~i~~~  311 (341)
T cd08237         241 QIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFE---------RAVELLSRNPEVAEYLRKLVGGV  311 (341)
T ss_pred             HHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHH---------HHHHHHHhCCcccCChHHHhccc
Confidence            789999999999999875  22334444566788888765432 3354         455556555   34688999999


Q ss_pred             cCC
Q psy16115        255 CPL  257 (258)
Q Consensus       255 ~~~  257 (258)
                      +||
T Consensus       312 ~~l  314 (341)
T cd08237         312 FPV  314 (341)
T ss_pred             ccc
Confidence            997

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.24  E-value=8.6e-11  Score=105.31  Aligned_cols=111  Identities=19%  Similarity=0.308  Sum_probs=87.2

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHHhCCeeeeccCccccccH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      +..+.|++|+|+|+|.+|+.+++.|+.+|++|+++|+++.+...+...|+...   ++.+.+.++|+||.++. ..++++
T Consensus       147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p-~~~i~~  225 (296)
T PRK08306        147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIP-ALVLTK  225 (296)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCC-hhhhhH
Confidence            34578999999999999999999999999999999999887767777777644   45677789999999864 356777


Q ss_pred             HHHhcCCCCcEEEecCCCChhhchhhhcCCCceee
Q psy16115        181 EHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWE  215 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~  215 (258)
                      +.++.|+++++++|++..+-..+++..+...+...
T Consensus       226 ~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~  260 (296)
T PRK08306        226 EVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKAL  260 (296)
T ss_pred             HHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEE
Confidence            88999999999999998732233344444444444

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.17  E-value=1e-10  Score=105.63  Aligned_cols=146  Identities=17%  Similarity=0.149  Sum_probs=108.2

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...+.++|+.++.+.|+-.+..-....+.+                       ++.  .--+|++|+|+|+|-+|...+|
T Consensus       130 ~~~~~~iP~~~d~~~aApllCaGiT~y~al-----------------------k~~--~~~pG~~V~I~G~GGlGh~avQ  184 (339)
T COG1064         130 ARYVVKIPEGLDLAEAAPLLCAGITTYRAL-----------------------KKA--NVKPGKWVAVVGAGGLGHMAVQ  184 (339)
T ss_pred             hHHeEECCCCCChhhhhhhhcCeeeEeeeh-----------------------hhc--CCCCCCEEEEECCcHHHHHHHH
Confidence            456789999998887765322111111111                       110  0127999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCccc-C-----H-HHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCC
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVV-K-----L-NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~-----l-~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~  199 (258)
                      .++++|++|+++|+++++++.|+++|++.. +     . +++-+.+|+++.+.+ ...++ +.++.+|++++++-+|...
T Consensus       185 ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~-~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         185 YAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLE-PSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             HHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHH-HHHHHHhcCCEEEEECCCC
Confidence            999999999999999999999999988632 1     1 222233999999998 88886 8999999999999999883


Q ss_pred             -hh---hchhhhcCCCceeeeecc
Q psy16115        200 -TE---IDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       200 -~~---~~~~~l~~~~i~~~~~~~  219 (258)
                       .+   .....+..+++++.++.-
T Consensus       263 ~~~~~~~~~~~li~~~~~i~GS~~  286 (339)
T COG1064         263 GGPIPLLPAFLLILKEISIVGSLV  286 (339)
T ss_pred             CcccCCCCHHHhhhcCeEEEEEec
Confidence             22   234557778888887743

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.14  E-value=3.4e-11  Score=110.70  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=105.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      .|++|+|.|.|.+|..+++.++..|+ +|++++.++.++..+++.|++..      ++.+.+.     ..|+++.|++..
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            78999999999999999999999999 59999999999888888887421      1222222     379999999877


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC--h--hhchhhhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCChhH
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN--T--EIDVNSLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPKSRL  247 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~--~--~~~~~~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~~~~  247 (258)
                      ..+. ..++.+++++.++.+|...  .  ......+..+++++.++....    +.+.         .++.|+.+++.++
T Consensus       271 ~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~---------~~~~l~~~g~i~~  340 (371)
T cd08281         271 PALE-TAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIP---------RYLALYLSGRLPV  340 (371)
T ss_pred             HHHH-HHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCChHHHHH---------HHHHHHHcCCCCc
Confidence            7775 7889999999999998652  1  233344566777777764321    1222         4567778888888


Q ss_pred             HHHHhhhcCC
Q psy16115        248 YLEILQTCPL  257 (258)
Q Consensus       248 ~~~~~~~~~~  257 (258)
                      ...|+|++||
T Consensus       341 ~~~i~~~~~l  350 (371)
T cd08281         341 DKLLTHRLPL  350 (371)
T ss_pred             hhheeeeecH
Confidence            8889999886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.13  E-value=1.8e-10  Score=102.45  Aligned_cols=191  Identities=19%  Similarity=0.231  Sum_probs=124.3

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.++. +.. .|+.|. |+|.+++....--.+ .-..++++++......+.........++..++   .+.++
T Consensus        77 ~~l~~~i~~Ln~-d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~aKDVdg~n~~n~G~l~~~~~~~~p~T~~gii~~L~~~~  154 (283)
T PRK14192         77 EQLLAKIEELNA-NPDVHGILLQHPVPAQIDERACFDAI-SLAKDVDGVTCLGFGRMAMGEAAYGSATPAGIMRLLKAYN  154 (283)
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEeCCCccccCHHHHHhcc-CHHHhcCCCCccccCccccCCCcccCCcHHHHHHHHHHcC
Confidence            457777788877 322 356665 888887664333333 44557777765432111111111223333443   22456


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++|+|+|.|. +|++++.+|...|++|+++++..             .++.+.++++|+||.|++.++.++.+  
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t-------------~~L~~~~~~aDIvI~AtG~~~~v~~~--  219 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT-------------QNLPELVKQADIIVGAVGKPELIKKD--  219 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc-------------hhHHHHhccCCEEEEccCCCCcCCHH--
Confidence            788999999999998 99999999999999999998632             24566778999999999988888754  


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                       ++++|++++|+|....+.   .+ -|.++..........++..++.+.+-|+.+|+.+
T Consensus       220 -~lk~gavViDvg~n~~~~---~~-~GDvd~~~~~~~a~~itPvPGGVGp~T~a~L~~n  273 (283)
T PRK14192        220 -WIKQGAVVVDAGFHPRDG---GG-VGDIELQGIEEIASAYTPVPGGVGPMTINTLIRQ  273 (283)
T ss_pred             -HcCCCCEEEEEEEeecCC---CC-cccccHHHhhccceEeCCCCCcChHHHHHHHHHH
Confidence             479999999999763210   11 2334433333344445666777777777766654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=99.13  E-value=1.3e-10  Score=95.77  Aligned_cols=81  Identities=26%  Similarity=0.434  Sum_probs=69.5

Q ss_pred             cccCCCEEEEEcCchH-HHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGEV-GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~I-G~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++|+|+|+|.+ |..+++.|+..|++|++++++.             .++.+.+.++|+||.+++.+++++.+. 
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~l~~aDiVIsat~~~~ii~~~~-  105 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEHTKQADIVIVAVGKPGLVKGDM-  105 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHHHhhCCEEEEcCCCCceecHHH-
Confidence            4589999999999985 9999999999999999998763             246678999999999999988888664 


Q ss_pred             hcCCCCcEEEecCCC-Chh
Q psy16115        184 DKMKNGCVVCNMGHS-NTE  201 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~-~~~  201 (258)
                        ++++.+++|+|.+ +.+
T Consensus       106 --~~~~~viIDla~prdvd  122 (168)
T cd01080         106 --VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             --ccCCeEEEEccCCCccc
Confidence              6889999999998 544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.10  E-value=5.1e-10  Score=91.68  Aligned_cols=135  Identities=13%  Similarity=0.170  Sum_probs=87.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcccccc---HH--HH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT---RE--HM  183 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~---~~--~l  183 (258)
                      ++|++||+|.||..+|+.|...|.+|++||+++++.....+.|.. ..++.++++++|+|++|......+.   ..  .+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999999988877777876 4589999999999999854432221   12  56


Q ss_pred             hcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        184 DKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      +.+++|.++||++..+.+   ...+.+....+.+.+.. ...    .......++...++.+++..|.+
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap-V~G----g~~~a~~g~l~~~~gG~~~~~~~  145 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAP-VSG----GPPGAEEGTLTIMVGGDEEAFER  145 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE-EES----HHHHHHHTTEEEEEES-HHHHHH
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccceeeeee-eec----ccccccccceEEEccCCHHHHHH
Confidence            778999999999987332   22344444445443331 100    00112234666677766665543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.06  E-value=1.2e-10  Score=105.32  Aligned_cols=140  Identities=17%  Similarity=0.197  Sum_probs=102.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc-C-----HHHH---HH--hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV-K-----LNEV---IR--TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~-~-----l~e~---~~--~aDvvi~~~~~~  175 (258)
                      .|++|+|+|.|.+|+.+++.++.+|++ |+++++++++...+.+.|++.. +     .+++   ..  ..|+++.+++..
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~  242 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT  242 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence            699999999999999999999999998 9999999888877777776421 1     1122   22  479999999887


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC-Chhhc-hhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCChhHHHHHh
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS-NTEID-VNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPKSRLYLEIL  252 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~-~~~~~-~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  252 (258)
                      ..+. +.++.++++++++.+|.. +.... ...+..+++++.++.... +.+.         .++.++.+++..+...|+
T Consensus       243 ~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~~~~~g~i~~~~~i~  312 (339)
T cd08239         243 AARR-LALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDME---------ECAEFLARHKLEVDRLVT  312 (339)
T ss_pred             HHHH-HHHHHhhcCCEEEEEcCCCCcccCcHHHHHhCCCEEEEEecCCHHHHH---------HHHHHHHcCCCChhHeEE
Confidence            7664 778899999999999875 22222 234455667777664432 2343         456666777777777888


Q ss_pred             hhcCC
Q psy16115        253 QTCPL  257 (258)
Q Consensus       253 ~~~~~  257 (258)
                      +++||
T Consensus       313 ~~~~l  317 (339)
T cd08239         313 HRFGL  317 (339)
T ss_pred             EEecH
Confidence            88875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.05  E-value=1.5e-10  Score=103.85  Aligned_cols=138  Identities=14%  Similarity=0.101  Sum_probs=101.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcccCHHH-HHHhCCeeeeccCccccccHHHHhc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVVKLNE-VIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~~l~e-~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      .|++++|+|+|.||...++.++.+|++ |+++|.++.++..+.....  .+..+ .-...|++++|+|....++ +.++.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~~~~-~~~~~  220 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPSLID-TLVRR  220 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHHHHH-HHHHh
Confidence            688999999999999999999999997 6678888877766544322  22222 1135799999999877775 78999


Q ss_pred             CCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115        186 MKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       186 ~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      ++++++++.+|..  +.+.....+..+++++.++.... +.|.         .++.|+.+++.++...|+|++||
T Consensus       221 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~l~~~g~i~~~~~it~~~~l  286 (308)
T TIGR01202       221 LAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLH---------AVRELIESGALSLDGLITHQRPA  286 (308)
T ss_pred             hhcCcEEEEEeecCCCcccccchhhhcceEEEEecccchhHHH---------HHHHHHHcCCCChhhccceeecH
Confidence            9999999999875  22333334445667777654432 3344         67777888888888889999886

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.03  E-value=3.1e-09  Score=94.20  Aligned_cols=135  Identities=16%  Similarity=0.168  Sum_probs=98.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc----ccc--HH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN----VVT--RE  181 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~----~i~--~~  181 (258)
                      .+|++||+|.||..+|++|...|..|.+||+++++ .+.+...|.. ..++.+.++.+|+||+|.....    ++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            37999999999999999999999999999999988 5556666776 4578899999999999954433    221  23


Q ss_pred             HHhcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        182 HMDKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      .++.+|+|.++||++..+.+   .....++.+.+...+. |...    -...-.+++...|+-+++..|.+
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDA-PVsG----g~~~A~~GtLtimvGG~~~~f~r  146 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDA-PVSG----GVPGAAAGTLTIMVGGDAEAFER  146 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEec-CccC----CchhhhhCceEEEeCCCHHHHHH
Confidence            56778999999999987322   2344666665554433 2111    11234567888888888887776

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=99.02  E-value=3.1e-09  Score=88.87  Aligned_cols=91  Identities=21%  Similarity=0.292  Sum_probs=70.5

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH-HHhCCCcc---cC----HHHHHHhCCeeeeccCcc
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSV---VK----LNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~~~g~~~---~~----l~e~~~~aDvvi~~~~~~  175 (258)
                      .++.||+|+|||.+. +|+.++.+|...|++|+++|.+...... .....-..   .+    +.+.+++||+||.+.|.+
T Consensus        58 ~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~  137 (197)
T cd01079          58 NRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSP  137 (197)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCC
Confidence            378999999999999 9999999999999999999864322110 00000111   12    678899999999999999


Q ss_pred             cc-ccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NV-VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~-i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++ +..+.   +|+|+++||+|..
T Consensus       138 ~~~i~~d~---ik~GavVIDVGi~  158 (197)
T cd01079         138 NYKVPTEL---LKDGAICINFASI  158 (197)
T ss_pred             CCccCHHH---cCCCcEEEEcCCC
Confidence            98 88654   6999999999976

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PLN02827 Alcohol dehydrogenase-like

Probab=99.00  E-value=1.3e-09  Score=100.64  Aligned_cols=140  Identities=20%  Similarity=0.268  Sum_probs=102.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|.|.|.+|+.+++.++.+|++ |+++++++.+.+.+++.|++. .       +..+.++     ..|+++.++|
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  272 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVG  272 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCC
Confidence            799999999999999999999999984 888898888888888888742 1       1222222     4799999999


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCC--hhhch-hhhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCCh
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSN--TEIDV-NSLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPKS  245 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~--~~~~~-~~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~~  245 (258)
                      ....+. +.++.++++ ++++.+|...  .+... ..+..+++++.++....    .+|.         ..+.++..++.
T Consensus       273 ~~~~~~-~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~---------~~~~~~~~g~i  342 (378)
T PLN02827        273 DTGIAT-TALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDLP---------SLVDKYMNKEI  342 (378)
T ss_pred             ChHHHH-HHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecCCCchhhhHH---------HHHHHHHcCCC
Confidence            877675 789999998 9999998762  22222 22444667777653321    1233         45667778888


Q ss_pred             hHHHHHhhhcCC
Q psy16115        246 RLYLEILQTCPL  257 (258)
Q Consensus       246 ~~~~~~~~~~~~  257 (258)
                      ++.+.|+|++||
T Consensus       343 ~~~~~i~~~~~l  354 (378)
T PLN02827        343 MIDEFITHNLSF  354 (378)
T ss_pred             ChHHheEEEecH
Confidence            888899999986

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.00  E-value=5.3e-10  Score=102.26  Aligned_cols=140  Identities=19%  Similarity=0.156  Sum_probs=102.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-----CHHHHH----H--hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-----KLNEVI----R--TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~~----~--~aDvvi~~~~~  174 (258)
                      .|++|+|.|.|.+|+.+++.++.+|++ |+++++++.+.+.+++.|++. .     +..+.+    .  +.|+++.|++.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~  255 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGR  255 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            689999999999999999999999995 999999999888888888642 1     222222    1  37999999987


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCCh----hhchhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCChh
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSNT----EIDVNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~~----~~~~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                      ...+. +.++.++++++++.+|....    +.....+..+++++.+....    .+.+.         .++.|++.++.+
T Consensus       256 ~~~~~-~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~l~~~g~l~  325 (358)
T TIGR03451       256 PETYK-QAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFP---------MLVDLYLQGRLP  325 (358)
T ss_pred             HHHHH-HHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHH---------HHHHHHHcCCCC
Confidence            76775 78889999999999997622    22222344556666654211    11122         466778888888


Q ss_pred             HHHHHhhhcCC
Q psy16115        247 LYLEILQTCPL  257 (258)
Q Consensus       247 ~~~~~~~~~~~  257 (258)
                      +...|+|++||
T Consensus       326 ~~~~i~~~~~l  336 (358)
T TIGR03451       326 LDAFVTERIGL  336 (358)
T ss_pred             chheEEEEecH
Confidence            88888998886

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=99.00  E-value=2.6e-09  Score=87.17  Aligned_cols=134  Identities=25%  Similarity=0.325  Sum_probs=79.6

Q ss_pred             CCCCcchhh---hccCcCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhC
Q psy16115         90 GPFKPSYYS---LKRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTV  165 (258)
Q Consensus        90 g~~~~~~~~---~~~~~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~a  165 (258)
                      +..++...+   +.+.++.++.||+|+|+|.+. +|+.++.+|...|++|+.++.+.             .++++.+++|
T Consensus        14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------~~l~~~~~~A   80 (160)
T PF02882_consen   14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------KNLQEITRRA   80 (160)
T ss_dssp             SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------SSHHHHHTTS
T ss_pred             CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------Ccccceeeec
Confidence            334444444   233456789999999999997 99999999999999999997543             3577889999


Q ss_pred             CeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115        166 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR  241 (258)
Q Consensus       166 Dvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  241 (258)
                      |+|+.+.|.++++..+   ++|+|+++||+|....  .-+.-.-|.++..........+...++.+.+-|+..|+.
T Consensus        81 DIVVsa~G~~~~i~~~---~ik~gavVIDvG~~~~--~~~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~  151 (160)
T PF02882_consen   81 DIVVSAVGKPNLIKAD---WIKPGAVVIDVGINYV--PGDGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMK  151 (160)
T ss_dssp             SEEEE-SSSTT-B-GG---GS-TTEEEEE--CEEE--TTTTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHH
T ss_pred             cEEeeeeccccccccc---cccCCcEEEecCCccc--cccceeeecccHHHhhccceEEeeCCCCccHHHHHHHHH
Confidence            9999999999999755   5799999999997622  000001111222222233333555556666555554443

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PLN02740 Alcohol dehydrogenase-like

Probab=98.98  E-value=7.6e-10  Score=102.21  Aligned_cols=139  Identities=19%  Similarity=0.222  Sum_probs=99.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-------HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-------LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-------l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|.|.||+.+++.++.+|+ +|+++++++.+.+.+++.|++. .+       +.+.+.     ..|+++.+++
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G  277 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAG  277 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            79999999999999999999999999 5999999999988888888742 11       222222     4899999999


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCCh--hhchhh--hcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSNT--EIDVNS--LRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~~--~~~~~~--l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ....+. +.++.++++ ++++.+|....  ...+..  +. +++++.++....    ..|.         .++.++.+++
T Consensus       278 ~~~~~~-~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~---------~~~~~~~~g~  346 (381)
T PLN02740        278 NVEVLR-EAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELF-DGRSITGSVFGDFKGKSQLP---------NLAKQCMQGV  346 (381)
T ss_pred             ChHHHH-HHHHhhhcCCCEEEEEccCCCCceecccHHHHh-cCCeEEEEecCCCCcHHHHH---------HHHHHHHcCC
Confidence            877775 788888886 89999987621  122211  22 345665542211    1233         4556666677


Q ss_pred             hhHHHHHhhhcCC
Q psy16115        245 SRLYLEILQTCPL  257 (258)
Q Consensus       245 ~~~~~~~~~~~~~  257 (258)
                      .++...|+|++||
T Consensus       347 i~~~~~it~~~~l  359 (381)
T PLN02740        347 VNLDGFITHELPF  359 (381)
T ss_pred             CChHHheeEEecH
Confidence            7777788898886

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=98.98  E-value=2.7e-10  Score=103.29  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=84.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHH-HHHhCCeeeeccCccccccHHHHhc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNE-VIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e-~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      .|++|+|.|.|.+|..+++.++.+|++|+++++++++.+.+++.|++.. +..+ .-...|+++.+++....+. ..++.
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~  243 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVP-PALEA  243 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHH-HHHHh
Confidence            6999999999999999999999999999999999999888999998642 2111 1134788888877766665 78999


Q ss_pred             CCCCcEEEecCCC--C-hhhchhhhcCCCceeeeecc
Q psy16115        186 MKNGCVVCNMGHS--N-TEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       186 ~k~g~~ivnvg~~--~-~~~~~~~l~~~~i~~~~~~~  219 (258)
                      ++++++++.+|..  + .......+..+++++.++..
T Consensus       244 l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~  280 (329)
T TIGR02822       244 LDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTS  280 (329)
T ss_pred             hCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeec
Confidence            9999999999974  2 22333344455667766543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.96  E-value=2.2e-09  Score=87.12  Aligned_cols=89  Identities=22%  Similarity=0.366  Sum_probs=68.7

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh-hHHHHHhCCCcccCHHHHHHhCCeeeecc---CccccccHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI-CALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH  182 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~-~~~~a~~~g~~~~~l~e~~~~aDvvi~~~---~~~~~i~~~~  182 (258)
                      |++|+|+|||+|..|+..|+.||..|.+|++..+... ....|.+.|++..+..|.++.+|+|++..   ....+..++.
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I   81 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEEI   81 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHHH
Confidence            5799999999999999999999999999998877766 56778999999999999999999999974   2344665566


Q ss_pred             HhcCCCCcEEEec
Q psy16115        183 MDKMKNGCVVCNM  195 (258)
Q Consensus       183 l~~~k~g~~ivnv  195 (258)
                      ...||+|..++..
T Consensus        82 ~p~l~~G~~L~fa   94 (165)
T PF07991_consen   82 APNLKPGATLVFA   94 (165)
T ss_dssp             HHHS-TT-EEEES
T ss_pred             HhhCCCCCEEEeC
Confidence            6789999988754

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.96  E-value=3.8e-09  Score=97.49  Aligned_cols=92  Identities=22%  Similarity=0.350  Sum_probs=74.6

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc----c---cCHHHHHHhCCeeeecc---C--
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS----V---VKLNEVIRTVDIVVTAT---G--  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~----~---~~l~e~~~~aDvvi~~~---~--  173 (258)
                      +.+.+|+|+|+|.+|+.+++.++.+|++|+++|+++.+.+.+.. .+..    .   .++.+.++++|+||.|+   +  
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence            46788999999999999999999999999999999887654432 3321    1   24567778999999985   3  


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++.+++++.++.||++++++|+|..
T Consensus       245 ~p~lit~~~l~~mk~g~vIvDva~d  269 (370)
T TIGR00518       245 APKLVSNSLVAQMKPGAVIVDVAID  269 (370)
T ss_pred             CCcCcCHHHHhcCCCCCEEEEEecC
Confidence            3567888999999999999999864

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=98.96  E-value=6.5e-10  Score=102.22  Aligned_cols=139  Identities=24%  Similarity=0.270  Sum_probs=96.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-------HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-------LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-------l~e~~~-----~aDvvi~~~~  173 (258)
                      .|++|+|+|.|.||+.+++.++.+|+ +|+++++++++++.+.+.|++. .+       +.+.+.     +.|+++.+++
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G  264 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIG  264 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            78999999999999999999999999 7999999999988888888742 11       122221     4799999998


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCC--Chhhc--hhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHS--NTEID--VNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~--~~~~~--~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ....+. +.++.++++ ++++.+|..  ..+..  ...+..++ .+.++...    ..+|.         .++.++.+++
T Consensus       265 ~~~~~~-~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~---------~~~~~~~~g~  333 (368)
T TIGR02818       265 NVNVMR-AALECCHKGWGESIIIGVAGAGQEISTRPFQLVTGR-VWRGSAFGGVKGRTELP---------GIVEQYMKGE  333 (368)
T ss_pred             CHHHHH-HHHHHhhcCCCeEEEEeccCCCCcccccHHHHhccc-eEEEeeccCCCcHHHHH---------HHHHHHHCCC
Confidence            776665 788889886 899988864  12221  11122222 23333111    11233         4666777777


Q ss_pred             hhHHHHHhhhcCC
Q psy16115        245 SRLYLEILQTCPL  257 (258)
Q Consensus       245 ~~~~~~~~~~~~~  257 (258)
                      .++...|+|++||
T Consensus       334 i~~~~~it~~~~l  346 (368)
T TIGR02818       334 IALDDFVTHTMPL  346 (368)
T ss_pred             CCchhheeEEecH
Confidence            7888889999987

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=98.95  E-value=1.7e-09  Score=96.85  Aligned_cols=139  Identities=24%  Similarity=0.310  Sum_probs=106.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cCH------H----HHHH-hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VKL------N----EVIR-TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~l------~----e~~~-~aDvvi~~~~~  174 (258)
                      +|.+|+|+|+|-+|++..+.++..|+ +|+.+|+++.+++.|+++|++. .+.      .    ++.. .+|+.|+|+|+
T Consensus       185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~  264 (366)
T COG1062         185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGN  264 (366)
T ss_pred             CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCC
Confidence            89999999999999999999999999 5999999999999999999863 222      1    2222 58999999999


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC--Chhhchh--hhcCCCceeeeecc----CcceeecCCCccCCCceeEEecCCChh
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS--NTEIDVN--SLRTPDLTWEKVRS----QVDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~--~l~~~~i~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                      .+.+. +.|+...+++..+-+|..  ..++.+.  .|..+ -.+.++.-    ...+++         ..+.|--.+|-.
T Consensus       265 ~~~~~-~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP---------~lv~~y~~Gkl~  333 (366)
T COG1062         265 VEVMR-QALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIP---------RLVDLYMAGKLP  333 (366)
T ss_pred             HHHHH-HHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchh---------HHHHHHHcCCCc
Confidence            99886 899999889999999987  3444333  34444 34554421    111233         556666689999


Q ss_pred             HHHHHhhhcCC
Q psy16115        247 LYLEILQTCPL  257 (258)
Q Consensus       247 ~~~~~~~~~~~  257 (258)
                      +.+.|||+.||
T Consensus       334 ~d~lvt~~~~L  344 (366)
T COG1062         334 LDRLVTHTIPL  344 (366)
T ss_pred             hhHHhhccccH
Confidence            99999999997

>cd08230 glucose_DH Glucose dehydrogenase

Probab=98.95  E-value=1.2e-09  Score=99.66  Aligned_cols=140  Identities=19%  Similarity=0.188  Sum_probs=99.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeC---ChhhHHHHHhCCCcccC-----HHH--HHHhCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI---DPICALQACMDGFSVVK-----LNE--VIRTVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~---~~~~~~~a~~~g~~~~~-----l~e--~~~~aDvvi~~~~~~~~  177 (258)
                      .|++|+|+|.|.||+.+++.++..|++|+++++   ++.+.+.+.+.|++..+     +.+  .....|+++.+++....
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  251 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPL  251 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHH
Confidence            789999999999999999999999999999987   57777778888876432     111  12347999999987777


Q ss_pred             ccHHHHhcCCCCcEEEecCCC-C-hhh--c----hhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCC----
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS-N-TEI--D----VNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPK----  244 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~-~-~~~--~----~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~----  244 (258)
                      +. +.++.+++++.++.+|.. + ...  .    ...+..+++++.++.... ++|..         .+.++...+    
T Consensus       252 ~~-~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~---------~~~~l~~~~~~~~  321 (355)
T cd08230         252 AF-EALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQ---------AVEDLAQWKYRWP  321 (355)
T ss_pred             HH-HHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHH---------HHHHHHhcccccc
Confidence            75 789999999999999875 2 222  1    234555677777764332 33442         333333333    


Q ss_pred             hhHHHHHhhhcCC
Q psy16115        245 SRLYLEILQTCPL  257 (258)
Q Consensus       245 ~~~~~~~~~~~~~  257 (258)
                      ..+...|+|++||
T Consensus       322 ~~~~~~i~~~~~l  334 (355)
T cd08230         322 GVLERLITRRVPL  334 (355)
T ss_pred             cchHHheeeeecH
Confidence            3466788888886

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.95  E-value=4e-09  Score=100.44  Aligned_cols=92  Identities=23%  Similarity=0.398  Sum_probs=77.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccC----------------------------H
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----------------------------L  158 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~----------------------------l  158 (258)
                      ..+.+|+|+|+|.+|+..++.++.+|++|+++|+++.+++.+..+|.+...                            +
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence            467999999999999999999999999999999999998888777765411                            2


Q ss_pred             HHHHHhCCeeeecc---C--ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        159 NEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       159 ~e~~~~aDvvi~~~---~--~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.++++|++|.+.   |  .+.++.++.++.||+|+++||++..
T Consensus       242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE  286 (511)
T ss_pred             HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence            33456799999986   4  4457888999999999999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=98.94  E-value=7.9e-10  Score=100.76  Aligned_cols=139  Identities=20%  Similarity=0.224  Sum_probs=94.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC--------HHHHHH------hCC----ee
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK--------LNEVIR------TVD----IV  168 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~--------l~e~~~------~aD----vv  168 (258)
                      .|++|+|.|.|.||..+++.++..|++|+++++++++...+++.|++. .+        +.+.++      +.|    ++
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v  245 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKI  245 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEE
Confidence            689999999999999999999999999999999999988888888642 11        122222      234    89


Q ss_pred             eeccCccccccHHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeeeeccC-cceeecCCCccCCCceeEEecCCCh
Q psy16115        169 VTATGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQ-VDHVIWPDVNLKNNTVIDLFRKPKS  245 (258)
Q Consensus       169 i~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~  245 (258)
                      ++|++....++ ..++.++++++++.+|...  .......+..+++++.+.... .+.|.         .++.++.+++.
T Consensus       246 ~d~~g~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~i~~g~i  315 (349)
T TIGR03201       246 FECSGSKPGQE-SALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRYP---------AALDLVLDGKI  315 (349)
T ss_pred             EECCCChHHHH-HHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHHH---------HHHHHHHcCCC
Confidence            99998877775 6789999999999999762  233333343445566554322 23344         34444444444


Q ss_pred             hHHHHHhhhcCC
Q psy16115        246 RLYLEILQTCPL  257 (258)
Q Consensus       246 ~~~~~~~~~~~~  257 (258)
                      .+..+|+ ++||
T Consensus       316 ~~~~~i~-~~~l  326 (349)
T TIGR03201       316 QLGPFVE-RRPL  326 (349)
T ss_pred             CcccceE-EecH
Confidence            4444443 4554

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.94  E-value=6.5e-09  Score=94.13  Aligned_cols=132  Identities=20%  Similarity=0.233  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCcccCHHHHHHhCCeeeeccC---ccccccHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTATG---NKNVVTREH  182 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~~~~l~e~~~~aDvvi~~~~---~~~~i~~~~  182 (258)
                      ++|++|+|||+|.||.++|+.|+.+|++|+++++.+.+ ...+.+.|+...+..++++++|+|+++..   ...+++++.
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I   94 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEEI   94 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999888776443 34455678877789999999999999852   334554466


Q ss_pred             HhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEe
Q psy16115        183 MDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLF  240 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~  240 (258)
                      +..+++|.+++. +.| +....... ....+++.-..|....-.....+.....+..|+
T Consensus        95 ~~~Lk~g~iL~~-a~G~~i~~~~~~-p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~  151 (330)
T PRK05479         95 EPNLKEGAALAF-AHGFNIHFGQIV-PPADVDVIMVAPKGPGHLVRREYEEGGGVPCLI  151 (330)
T ss_pred             HhcCCCCCEEEE-CCCCChhhceec-cCCCCcEEEeCCCCCchhhhhhhhcCCCceEEE
Confidence            778999988843 444 33322111 123345555545443333333344445555566

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=98.94  E-value=1.8e-09  Score=99.79  Aligned_cols=117  Identities=12%  Similarity=0.114  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCccc----CH---HHHHHhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVV----KL---NEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~~~----~l---~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      .|++|+|.|.|.+|+.+++.++.+|++|++++.++++ .+.+++.|++..    +.   .+.....|+++.+++....+.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~  257 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALL  257 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHH
Confidence            6899999999999999999999999999988877544 455566777422    11   122234799999998776665


Q ss_pred             HHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc-ceee
Q psy16115        180 REHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV-DHVI  225 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~-~~~~  225 (258)
                       +.++.+++++.++.+|..  +.+.....+..+++++.++.... ..|.
T Consensus       258 -~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  305 (375)
T PLN02178        258 -PLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQ  305 (375)
T ss_pred             -HHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHH
Confidence             788999999999999875  33344455556777777765433 3355

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.93  E-value=3.9e-09  Score=83.90  Aligned_cols=104  Identities=24%  Similarity=0.350  Sum_probs=76.7

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHH-hC---CCc---ccCHHHHHHhCCeeeeccCcc-c
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQAC-MD---GFS---VVKLNEVIRTVDIVVTATGNK-N  176 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~-~~---g~~---~~~l~e~~~~aDvvi~~~~~~-~  176 (258)
                      +++|++++|+|+|.+|+.++..|...|++ |++++|+.++.+... ..   .+.   ..++.+.+.++|+||.|++.. .
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            47999999999999999999999999995 999999998865432 22   222   234566788999999997555 3


Q ss_pred             cccHHHHhcCCCC-cEEEecCCC-ChhhchhhhcC
Q psy16115        177 VVTREHMDKMKNG-CVVCNMGHS-NTEIDVNSLRT  209 (258)
Q Consensus       177 ~i~~~~l~~~k~g-~~ivnvg~~-~~~~~~~~l~~  209 (258)
                      .+.++.++..++. .+++|++.+ +.+..+..+.+
T Consensus        89 ~i~~~~~~~~~~~~~~v~Dla~Pr~i~~~v~~~~~  123 (135)
T PF01488_consen   89 IITEEMLKKASKKLRLVIDLAVPRDIDPEVAELPG  123 (135)
T ss_dssp             SSTHHHHTTTCHHCSEEEES-SS-SB-TTCGGSTT
T ss_pred             ccCHHHHHHHHhhhhceeccccCCCCChhhcccCC
Confidence            7777777665543 499999988 76666665543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.93  E-value=1.5e-09  Score=97.57  Aligned_cols=83  Identities=37%  Similarity=0.504  Sum_probs=77.4

Q ss_pred             heeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHH
Q psy16115          8 QWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQA   81 (258)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~   81 (258)
                      -|++|++||+|++++++||.++      +|+|++.+++.. ..++..+|+++|.++|+++|.+.+..++.-++.+++.+.
T Consensus       332 i~llaeGRLvNLa~a~GHPs~VMd~SFanQaLa~~~L~~n-~~~~~~~Vy~lP~~lD~~VArl~L~~~G~~i~~Lt~eQ~  410 (420)
T COG0499         332 IILLAEGRLVNLAAATGHPSEVMDMSFANQALAQIYLVKN-HGKLEPGVYRLPKELDEEVARLKLEAMGIELDELTEEQA  410 (420)
T ss_pred             EEEEecceeeeeccCCCCcHHHhhhhHHHHHHHHHHHHhc-ccccCCceeeCcHHHHHHHHHHHHHHhCceeeecCHHHH
Confidence            4899999999999999999985      999999999988 478999999999999999999999999999999999999


Q ss_pred             HhhhcccCCC
Q psy16115         82 KYMGLNKAGP   91 (258)
Q Consensus        82 ~~~~~~~~g~   91 (258)
                      +|+..|..|+
T Consensus       411 ~Yl~~w~~Gt  420 (420)
T COG0499         411 EYLGSWEEGT  420 (420)
T ss_pred             HHhCCCCCCC
Confidence            9998887764

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=98.92  E-value=1.2e-09  Score=99.30  Aligned_cols=145  Identities=16%  Similarity=0.147  Sum_probs=102.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHHH-----hCC-eeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNEVIR-----TVD-IVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~-----~aD-vvi~~~~~  174 (258)
                      .|++|+|.|.|.+|+.+++.++..|++ |+++++++++.+.+++.|++..      +.+++.+     ..| +++.|+|.
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~  239 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGV  239 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCC
Confidence            689999999999999999999999997 7889999888877777776421      1222221     356 99999998


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC--Chhh---chhhhcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCChhHH
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS--NTEI---DVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~--~~~~---~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~  248 (258)
                      ...++ +.++.+++++.++.+|..  +...   .+..+..+++++.++.... ..|.  ...+  ...+.++.+++.++.
T Consensus       240 ~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~--~~~~--~~~~~~~~~g~i~~~  314 (347)
T PRK10309        240 PQTVE-LAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWP--GQEW--ETASRLLTERKLSLE  314 (347)
T ss_pred             HHHHH-HHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcc--hhHH--HHHHHHHHcCCCCch
Confidence            77776 789999999999999865  2111   1223455677777653321 1110  0111  146667777887788


Q ss_pred             HHHhhhcCC
Q psy16115        249 LEILQTCPL  257 (258)
Q Consensus       249 ~~~~~~~~~  257 (258)
                      +.|+|++||
T Consensus       315 ~~i~~~~~l  323 (347)
T PRK10309        315 PLIAHRGSF  323 (347)
T ss_pred             hheEEEeeH
Confidence            899999886

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.88  E-value=1.2e-08  Score=86.49  Aligned_cols=108  Identities=18%  Similarity=0.268  Sum_probs=80.2

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-CCcccCHHHHHH-hCCeeeeccCccccccHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVVKLNEVIR-TVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-g~~~~~l~e~~~-~aDvvi~~~~~~~~i~~~  181 (258)
                      +.+++|++++|+|+|.||+.+++.|..+|++|+++|+++.+.....+. +....+.++++. ++|+++.|+. .+.++.+
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-~~~I~~~  101 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-GGVINDD  101 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-ccccCHH
Confidence            345799999999999999999999999999999999998876554433 666556666665 7999997763 4688889


Q ss_pred             HHhcCCCCcEEEecCCCCh--hhchhhhcCCCce
Q psy16115        182 HMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLT  213 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i~  213 (258)
                      .++.++.. +++.-+.+..  +.--+.|+.+.+.
T Consensus       102 ~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~  134 (200)
T cd01075         102 TIPQLKAK-AIAGAANNQLADPRHGQMLHERGIL  134 (200)
T ss_pred             HHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCE
Confidence            99999754 5666555522  2333455555553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=98.88  E-value=1.1e-08  Score=91.30  Aligned_cols=104  Identities=17%  Similarity=0.250  Sum_probs=78.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc----cc-c-HHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN----VV-T-REHM  183 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~----~i-~-~~~l  183 (258)
                      +|+|||+|.||..+++.+...|.+|++||+++.+...+.+.|.. ..+..+.++++|+|++|.....    ++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            48999999999999999999999999999999887766666664 4578889999999999964432    22 1 1245


Q ss_pred             hcCCCCcEEEecCCCCh---hhchhhhcCCCcee
Q psy16115        184 DKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTW  214 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~  214 (258)
                      ..++++.+++|+++...   ..+.+.++.+.+..
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~  114 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDY  114 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence            67899999999988732   23445565544443

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=98.86  E-value=2.2e-09  Score=98.46  Aligned_cols=110  Identities=14%  Similarity=0.142  Sum_probs=80.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-HHHhCCCccc----C---HHHHHHhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFSVV----K---LNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~g~~~~----~---l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      .|++|+|.|.|.+|+.+++.++.+|++|++++.++.+.. .+.+.|++..    +   +.+.....|+++.+++....+.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~  262 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALG  262 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHH
Confidence            789999999999999999999999999888877765543 3456776421    1   1222235799999998766675


Q ss_pred             HHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeec
Q psy16115        180 REHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~  218 (258)
                       +.++.+++++.++.+|..  +.+.....+..+++.+.++.
T Consensus       263 -~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~  302 (360)
T PLN02586        263 -PLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSD  302 (360)
T ss_pred             -HHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcC
Confidence             789999999999999865  32334444445566666554

>KOG1370|consensus

Probab=98.85  E-value=3.6e-09  Score=93.23  Aligned_cols=88  Identities=55%  Similarity=0.854  Sum_probs=80.9

Q ss_pred             eeeeccccccccccCCCcch------hhHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHHH
Q psy16115          9 WTLGFKRRVSPVCIRSNPLI------IPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAK   82 (258)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~   82 (258)
                      -++|++||+|++|..++|.=      .+|+++++++|++|.++|..+|+-+|..+|++||++-++.+.+.+..+++.+.+
T Consensus       338 IlLAeGRLvNL~CatghpSFvmS~sftnQvlAqIeLwt~p~~kY~~~V~~LPKklDE~VA~lHL~kl~~kLTkLt~~Qa~  417 (434)
T KOG1370|consen  338 ILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTAPEGKYKVGVYVLPKKLDEYVASLHLGKLGAKLTKLTDKQAK  417 (434)
T ss_pred             EEEecCceeecccccCCCceEEecchHHHHHHHHHHhcCCCCccccceEecchhhHHHHHHhhhhhhchhhhhhhHHHHH
Confidence            47999999999999999985      499999999999986799999999999999999999999899999999999999


Q ss_pred             hhhcccCCCCCcch
Q psy16115         83 YMGLNKAGPFKPSY   96 (258)
Q Consensus        83 ~~~~~~~g~~~~~~   96 (258)
                      |++..+.||+.+-.
T Consensus       418 YlG~~~~gPfKpdh  431 (434)
T KOG1370|consen  418 YLGLSKDGPFKPDH  431 (434)
T ss_pred             hcCCCcCCCCCCCC
Confidence            99999999987643

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.85  E-value=2.2e-08  Score=80.03  Aligned_cols=81  Identities=25%  Similarity=0.379  Sum_probs=70.4

Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      ++.++.|++|.|+|.+. +|+.++.+|...|++|+.++.+.             .++++.+++||+|+.+++.++.++.+
T Consensus        22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~v~~ADIVvsAtg~~~~i~~~   88 (140)
T cd05212          22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSKVHDADVVVVGSPKPEKVPTE   88 (140)
T ss_pred             cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCCCCccCHH
Confidence            45678999999999998 99999999999999999997533             25678899999999999999999855


Q ss_pred             HHhcCCCCcEEEecCCCC
Q psy16115        182 HMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~  199 (258)
                         ++|+|++++|+|...
T Consensus        89 ---~ikpGa~Vidvg~~~  103 (140)
T cd05212          89 ---WIKPGATVINCSPTK  103 (140)
T ss_pred             ---HcCCCCEEEEcCCCc
Confidence               479999999999763

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.85  E-value=3.7e-08  Score=88.40  Aligned_cols=103  Identities=16%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHh---CCeeeeccCcc----ccccHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRT---VDIVVTATGNK----NVVTREH  182 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~---aDvvi~~~~~~----~~i~~~~  182 (258)
                      +|+|||+|.||..+++.+...|.+|++||+++.+.+.+.+.|... .++++++++   +|+|++|..+.    .+++ ..
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~-~i   80 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK-DL   80 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH-HH
Confidence            699999999999999999999999999999998877666677654 478888876   58999986544    3343 55


Q ss_pred             HhcCCCCcEEEecCCC---ChhhchhhhcCCCcee
Q psy16115        183 MDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTW  214 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~  214 (258)
                      +..+++|.++||++..   ......+.+..+.+..
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~  115 (299)
T PRK12490         81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHY  115 (299)
T ss_pred             hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeE
Confidence            6678899999999887   2233344555444443

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=98.82  E-value=2.6e-08  Score=89.29  Aligned_cols=106  Identities=12%  Similarity=0.235  Sum_probs=80.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc----ccc--HHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN----VVT--REH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~----~i~--~~~  182 (258)
                      ++|+|||+|.||..+++.+...|.+|++||+++.+.....+.|.. ..++.++++++|+|++|.....    ++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            379999999999999999999999999999999887776666764 4578888999999999964443    221  123


Q ss_pred             HhcCCCCcEEEecCCCCh---hhchhhhcCCCceee
Q psy16115        183 MDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWE  215 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~~  215 (258)
                      +..++++.++||++..+.   ....+.+..+.+...
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~l  117 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMM  117 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEE
Confidence            556789999999999832   333455655555533

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=98.82  E-value=1.2e-08  Score=95.02  Aligned_cols=149  Identities=19%  Similarity=0.208  Sum_probs=100.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~~  174 (258)
                      .|++|+|.|.|.||+.+++.++.+|++ |++.|+++.+++.+++.|++..      ++.+.+.      ..|+++.++|.
T Consensus       185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~  264 (393)
T TIGR02819       185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGF  264 (393)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCCC
Confidence            789999999999999999999999997 5556888888888888887422      2222221      37999999987


Q ss_pred             cc--------------cccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeeccCcceeecCCCccC----C
Q psy16115        175 KN--------------VVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLK----N  233 (258)
Q Consensus       175 ~~--------------~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~----~  233 (258)
                      +.              .++ +.++.+++++.++.+|...   .......+..+++++.....+..+..+.-..-.    .
T Consensus       265 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~  343 (393)
T TIGR02819       265 EARGHGHDGKKEAPATVLN-SLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQTPVMKYN  343 (393)
T ss_pred             ccccccccccccchHHHHH-HHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEeccCChhhhH
Confidence            63              565 8899999999999999862   111112344455544432221111000000000    0


Q ss_pred             CceeEEecCCChhHHHHHh-hhcCC
Q psy16115        234 NTVIDLFRKPKSRLYLEIL-QTCPL  257 (258)
Q Consensus       234 ~~~~~l~~~~~~~~~~~~~-~~~~~  257 (258)
                      ..++.++.+++.++.+.|+ |+|||
T Consensus       344 ~~~~~~~~~g~i~~~~~i~~~~~~l  368 (393)
T TIGR02819       344 RNLMQAILHDRVQIAKAVNVTVISL  368 (393)
T ss_pred             HHHHHHHHcCCCCHHHceecceecH
Confidence            1467888899999988888 78987

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>KOG0022|consensus

Probab=98.81  E-value=7.2e-09  Score=91.82  Aligned_cols=139  Identities=24%  Similarity=0.208  Sum_probs=96.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCc-ccC-------HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS-VVK-------LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~-~~~-------l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++++|+|+|.+|+++++-+|.+|+ +|+.+|.++.+.+.+++.|++ ..+       ..|.+.     +.|+-++|.|
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G  271 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIG  271 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecC
Confidence            89999999999999999999999998 699999999999999999985 233       233332     4799999999


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCC--Chhh--chhhhcCCCcee---eee-ccCcceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHS--NTEI--DVNSLRTPDLTW---EKV-RSQVDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~--~~~~--~~~~l~~~~i~~---~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      +...+. ++|...++| +.-|-+|..  ..+.  ....|..|+.-.   .+- .+..+--.+..+.+          +.+
T Consensus       272 ~~~~m~-~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP~lV~~y~----------~~~  340 (375)
T KOG0022|consen  272 NVSTMR-AALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIPKLVKDYM----------KKK  340 (375)
T ss_pred             CHHHHH-HHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhhHHHHHHH----------hCc
Confidence            999996 888888888 555566655  3332  233444454421   111 11111111112222          466


Q ss_pred             hhHHHHHhhhcCC
Q psy16115        245 SRLYLEILQTCPL  257 (258)
Q Consensus       245 ~~~~~~~~~~~~~  257 (258)
                      -.++..|||+.||
T Consensus       341 l~ld~~ITh~l~f  353 (375)
T KOG0022|consen  341 LNLDEFITHELPF  353 (375)
T ss_pred             cchhhhhhcccCH
Confidence            6778888988886

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.81  E-value=3.1e-08  Score=88.51  Aligned_cols=90  Identities=21%  Similarity=0.301  Sum_probs=72.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccc----ccc--HHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVT--REH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~----~i~--~~~  182 (258)
                      .+|+|||+|.||..+++.+...|.+|++||+++.+.+...+.|... .+++++++++|+|++|.....    ++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            4799999999999999999999999999999998876666667654 468888999999999964332    221  124


Q ss_pred             HhcCCCCcEEEecCCCC
Q psy16115        183 MDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~  199 (258)
                      ++.++++.+++|++...
T Consensus        83 ~~~~~~g~iiid~st~~   99 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIA   99 (296)
T ss_pred             hhcCCCCcEEEECCCCC
Confidence            56789999999999883

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=98.81  E-value=1.1e-08  Score=93.85  Aligned_cols=139  Identities=25%  Similarity=0.252  Sum_probs=96.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-C-------HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-K-------LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-~-------l~e~~~-----~aDvvi~~~~  173 (258)
                      .|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+.+.|++.. +       +.+.+.     ..|+++.+++
T Consensus       184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g  263 (365)
T cd08277         184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTG  263 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCC
Confidence            78999999999999999999999999 69999999988877777776421 1       122222     4799999998


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCC---hhhchhhhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCCh
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPKS  245 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~~  245 (258)
                      ....+. +.++.++++ +.++.+|..+   .+.....+.. ++++.++....    ..+.         ..+.++.+.+.
T Consensus       264 ~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~---------~~~~~~~~~~~  332 (365)
T cd08277         264 NADLMN-EALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVP---------KLVSKYMNKKF  332 (365)
T ss_pred             ChHHHH-HHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCChHHHHH---------HHHHHHHCCCc
Confidence            766665 788889875 9999988752   2222222222 44554432211    1122         45556666677


Q ss_pred             hHHHHHhhhcCC
Q psy16115        246 RLYLEILQTCPL  257 (258)
Q Consensus       246 ~~~~~~~~~~~~  257 (258)
                      .+...|+|++||
T Consensus       333 ~~~~~i~~~~~l  344 (365)
T cd08277         333 DLDELITHVLPF  344 (365)
T ss_pred             ChhHheeeEEch
Confidence            788889999887

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PLN02712 arogenate dehydrogenase

Probab=98.77  E-value=4.3e-08  Score=96.81  Aligned_cols=117  Identities=9%  Similarity=0.099  Sum_probs=81.6

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHH-hCCeeeeccC---ccccc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIR-TVDIVVTATG---NKNVV  178 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~-~aDvvi~~~~---~~~~i  178 (258)
                      +.++.+++|+|||+|.||..+|+.++.+|.+|+++|++... ..+.+.|+.. .++++++. .+|+|++|+.   +..++
T Consensus       364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi  442 (667)
T PLN02712        364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVL  442 (667)
T ss_pred             cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHH
Confidence            44568899999999999999999999999999999998653 3455667643 46777776 5899999953   34445


Q ss_pred             cHHHHhcCCCCcEEEecCCCCh--hhchhhhcCCCceeeeeccCc
Q psy16115        179 TREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i~~~~~~~~~  221 (258)
                      ..-....+|+|++++|++....  -..+..+......+.+.+|..
T Consensus       443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~  487 (667)
T PLN02712        443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMF  487 (667)
T ss_pred             HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCC
Confidence            4222235899999999998732  122222322334555555544

>KOG0023|consensus

Probab=98.75  E-value=3.7e-08  Score=87.64  Aligned_cols=145  Identities=17%  Similarity=0.188  Sum_probs=100.9

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...+.++|+.++.+.|+=.+      ..+++                  .+..++..+.. +|+.++|+|+|-+|....+
T Consensus       145 ~~~a~kIP~~~pl~~aAPlL------CaGIT------------------vYspLk~~g~~-pG~~vgI~GlGGLGh~aVq  199 (360)
T KOG0023|consen  145 EVFAIKIPENLPLASAAPLL------CAGIT------------------VYSPLKRSGLG-PGKWVGIVGLGGLGHMAVQ  199 (360)
T ss_pred             eeeEEECCCCCChhhccchh------hcceE------------------EeehhHHcCCC-CCcEEEEecCcccchHHHH
Confidence            45677999999887775321      11111                  11111111223 8999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHh-CCCcc-c----C---HHHHHHhCCeeeeccC--ccccccHHHHhcCCCCcEEEec
Q psy16115        127 SLKGLGCVIYITEIDPICALQACM-DGFSV-V----K---LNEVIRTVDIVVTATG--NKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-~----~---l~e~~~~aDvvi~~~~--~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                      .+|++|++|+++|++..+.+++.+ +|++. .    +   .+++...-|.++.+..  +.+.++ ..++.||+++.+|-+
T Consensus       200 ~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~~~~-~~~~~lk~~Gt~V~v  278 (360)
T KOG0023|consen  200 YAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEHALE-PLLGLLKVNGTLVLV  278 (360)
T ss_pred             HHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeeccccchH-HHHHHhhcCCEEEEE
Confidence            999999999999999866666655 78752 1    2   2233344577777765  777786 889999999999999


Q ss_pred             CCC--ChhhchhhhcCCCceeeee
Q psy16115        196 GHS--NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       196 g~~--~~~~~~~~l~~~~i~~~~~  217 (258)
                      |.+  ..+.+...|--+.+.+.++
T Consensus       279 g~p~~~~~~~~~~lil~~~~I~GS  302 (360)
T KOG0023|consen  279 GLPEKPLKLDTFPLILGRKSIKGS  302 (360)
T ss_pred             eCcCCcccccchhhhcccEEEEee
Confidence            998  3444455566667766654

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=98.75  E-value=2e-08  Score=92.19  Aligned_cols=139  Identities=22%  Similarity=0.267  Sum_probs=98.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-------HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-------LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-------l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|.|.+|+.+++.++.+|+ +|+++++++++.+.+++.|++. .+       +.+.++     ..|+++.+++
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G  266 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTG  266 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            79999999999999999999999999 7999999999888888888642 11       222222     3799999988


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCC--hhhchh--hhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSN--TEIDVN--SLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~--~~~~~~--~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ....+. +.++.++++ ++++.+|..+  ....+.  .+. +++++.++....    ..+.         .++.++.+++
T Consensus       267 ~~~~~~-~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~---------~~~~~~~~g~  335 (369)
T cd08301         267 NIDAMI-SAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGTLFGGYKPKTDLP---------NLVEKYMKKE  335 (369)
T ss_pred             ChHHHH-HHHHHhhcCCCEEEEECcCCCCcccccCHHHHh-cCCeEEEEecCCCChHHHHH---------HHHHHHHcCC
Confidence            776665 678889996 9999998762  222222  222 246666542211    1122         3556666777


Q ss_pred             hhHHHHHhhhcCC
Q psy16115        245 SRLYLEILQTCPL  257 (258)
Q Consensus       245 ~~~~~~~~~~~~~  257 (258)
                      .++...|+|++||
T Consensus       336 ~~~~~~i~~~~~l  348 (369)
T cd08301         336 LELEKFITHELPF  348 (369)
T ss_pred             CCcHHheeeeecH
Confidence            7777888898886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=98.75  E-value=1.9e-08  Score=92.32  Aligned_cols=139  Identities=25%  Similarity=0.298  Sum_probs=95.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-------HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-------LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-------l~e~~~-----~aDvvi~~~~  173 (258)
                      .|++|+|.|.|.||+.+++.++.+|+ +|+++++++++...+.+.|++. .+       +.+.+.     ..|+++.+++
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g  265 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIG  265 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCC
Confidence            79999999999999999999999999 6999999999888888888642 11       222222     4799999998


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCC--Chhhc--hhhhcCCCceeeeecc----CcceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHS--NTEID--VNSLRTPDLTWEKVRS----QVDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~--~~~~~--~~~l~~~~i~~~~~~~----~~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ....++ +.++.++++ ++++.+|..  ..+..  ...+..+ ..+.+...    ..+.+.         .++.++..++
T Consensus       266 ~~~~~~-~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~---------~~~~~~~~g~  334 (368)
T cd08300         266 NVKVMR-AALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTG-RVWKGTAFGGWKSRSQVP---------KLVEDYMKGK  334 (368)
T ss_pred             ChHHHH-HHHHhhccCCCeEEEEccCCCCCccccCHHHHhhc-CeEEEEEecccCcHHHHH---------HHHHHHHcCC
Confidence            776675 788889886 899988864  22221  1112211 22222211    111222         4556667777


Q ss_pred             hhHHHHHhhhcCC
Q psy16115        245 SRLYLEILQTCPL  257 (258)
Q Consensus       245 ~~~~~~~~~~~~~  257 (258)
                      ......|+|++||
T Consensus       335 l~~~~~i~~~~~l  347 (368)
T cd08300         335 IKVDEFITHTMPL  347 (368)
T ss_pred             CChhhceeeeEcH
Confidence            7777788898886

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=98.73  E-value=1.9e-08  Score=91.44  Aligned_cols=140  Identities=20%  Similarity=0.207  Sum_probs=98.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHH----H--hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVI----R--TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~--~aDvvi~~~~~  174 (258)
                      +|++|+|.|.|.+|..+++.++..|+ +|++++.++.+...+.+.|++..      ++.+.+    .  ..|+++.+.+.
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~  251 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGV  251 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCC
Confidence            78999999999999999999999999 79999888888776666676421      222222    2  38999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeeeeccC-cceeecCCCccCCCceeEEecCCChhHHHHH
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQ-VDHVIWPDVNLKNNTVIDLFRKPKSRLYLEI  251 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~  251 (258)
                      ...+. +.++.+++++.++.+|...  .......+..+.+++.+.... .+.+.         .++.++.+++.++...|
T Consensus       252 ~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~~~~~g~l~~~~~i  321 (351)
T cd08233         252 QATLD-TAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFE---------EVIDLLASGKIDAEPLI  321 (351)
T ss_pred             HHHHH-HHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHH---------HHHHHHHcCCCChHHhe
Confidence            66664 7888999999999998752  222333344556676665332 23344         45666666666666667


Q ss_pred             hhhcCC
Q psy16115        252 LQTCPL  257 (258)
Q Consensus       252 ~~~~~~  257 (258)
                      .+++||
T Consensus       322 ~~~~~l  327 (351)
T cd08233         322 TSRIPL  327 (351)
T ss_pred             EEEecH
Confidence            777765

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.72  E-value=5e-08  Score=91.50  Aligned_cols=100  Identities=24%  Similarity=0.306  Sum_probs=75.7

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHH-HHHhCCCcc---cCHHHHHHhCCeeeeccCcc-cccc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICAL-QACMDGFSV---VKLNEVIRTVDIVVTATGNK-NVVT  179 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~-~a~~~g~~~---~~l~e~~~~aDvvi~~~~~~-~~i~  179 (258)
                      .+.|++|+|+|+|.||+.+++.|+..| .+|+++++++.+.. .+...+...   .++.+.+.++|+||.|++.+ .+++
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~  256 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVS  256 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEc
Confidence            368999999999999999999999999 57999999988754 344445432   34567778999999998655 4677


Q ss_pred             HHHHhcCC----CCcEEEecCCC-Chhhchh
Q psy16115        180 REHMDKMK----NGCVVCNMGHS-NTEIDVN  205 (258)
Q Consensus       180 ~~~l~~~k----~g~~ivnvg~~-~~~~~~~  205 (258)
                      ++.++.+.    ...+++|.+.+ |.+..+.
T Consensus       257 ~e~l~~~~~~~~~~~~viDla~Prdid~~v~  287 (417)
T TIGR01035       257 KEDVERALRERTRPLFIIDIAVPRDVDPAVA  287 (417)
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCCCCCChhhc
Confidence            77776542    24589999987 5554443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.72  E-value=1.2e-07  Score=78.04  Aligned_cols=91  Identities=30%  Similarity=0.421  Sum_probs=68.9

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---c------------------------cCHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---V------------------------VKLN  159 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~------------------------~~l~  159 (258)
                      +...+|+|+|.|.+|+..++.++.+|++|+.+|.++.+.......+..   .                        ..+.
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~   97 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA   97 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH
Confidence            467999999999999999999999999999999998876654444322   1                        1256


Q ss_pred             HHHHhCCeeeec-----cCccccccHHHHhcCCCCcEEEecCC
Q psy16115        160 EVIRTVDIVVTA-----TGNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       160 e~~~~aDvvi~~-----~~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      +.++.+|+++.+     ...+.++.++.++.||++.+|+|++-
T Consensus        98 ~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   98 EFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred             HHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence            667789999975     35778999999999999999999974

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=98.72  E-value=7.3e-08  Score=86.51  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=79.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHh---CCeeeeccCcc----ccccHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRT---VDIVVTATGNK----NVVTREH  182 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~---aDvvi~~~~~~----~~i~~~~  182 (258)
                      +|+|||+|.||..+++.|...|.+|++||+++.+.....+.|+... +++++++.   +|+|+++....    .+++ ..
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~-~l   80 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID-EL   80 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH-HH
Confidence            6999999999999999999999999999999988777667777644 68888775   59999985443    2342 55


Q ss_pred             HhcCCCCcEEEecCCCCh---hhchhhhcCCCceeee
Q psy16115        183 MDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWEK  216 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~~~  216 (258)
                      ...++++.++||++....   ....+.+..+.+...+
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~d  117 (301)
T PRK09599         81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVD  117 (301)
T ss_pred             HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEe
Confidence            677899999999988732   2234555555555443

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.71  E-value=1.1e-07  Score=85.77  Aligned_cols=102  Identities=26%  Similarity=0.343  Sum_probs=75.4

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhH-HHHHhCCCcccC---HHHHHHhCCeeeeccCcccc--cc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICA-LQACMDGFSVVK---LNEVIRTVDIVVTATGNKNV--VT  179 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~-~~a~~~g~~~~~---l~e~~~~aDvvi~~~~~~~~--i~  179 (258)
                      +.|++|+|+|+|.||+.+++.++..|. +|+++|+++.+. ..+.+.|....+   +.+.+.++|+||.|++.+..  +.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~  255 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV  255 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence            589999999999999999999998875 699999998775 345556655433   45667789999999877765  11


Q ss_pred             HHHHhcC-CCCcEEEecCCC-Chhhchhhhc
Q psy16115        180 REHMDKM-KNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       180 ~~~l~~~-k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      ++.++.. +++.+++|++.+ |.+..+..+.
T Consensus       256 ~~~~~~~~~~~~~viDlavPrdi~~~v~~l~  286 (311)
T cd05213         256 ERAMKKRSGKPRLIVDLAVPRDIEPEVGELE  286 (311)
T ss_pred             HHHHhhCCCCCeEEEEeCCCCCCchhhccCC
Confidence            2333333 357899999987 6655555443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.71  E-value=1.1e-07  Score=85.90  Aligned_cols=113  Identities=22%  Similarity=0.280  Sum_probs=76.6

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCC-hhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID-PICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREH  182 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~-~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~  182 (258)
                      ++|++|+|||+|.||.++++.|+.+|.+|+++++. +.+...+.+.|+...+..++++++|+|+++....   ..+.++.
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei   80 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEVYEAEI   80 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHHHHHHH
Confidence            47899999999999999999999999987765543 4444555567887677888899999999996332   2333345


Q ss_pred             HhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCc
Q psy16115        183 MDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                      ...++++. ++-++.| +.......+. +.+++.-+.|..
T Consensus        81 ~~~l~~g~-iVs~aaG~~i~~~~~~~~-~~~~VvrvmPn~  118 (314)
T TIGR00465        81 QPLLKEGK-TLGFSHGFNIHFVQIVPP-KDVDVVMVAPKG  118 (314)
T ss_pred             HhhCCCCc-EEEEeCCccHhhccccCC-CCCcEEEECCCC
Confidence            56688776 5556666 4443333332 234444444433

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.71  E-value=9.1e-08  Score=89.92  Aligned_cols=102  Identities=23%  Similarity=0.343  Sum_probs=76.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHhCCCccc---CHHHHHHhCCeeeeccCccc-ccc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVV---KLNEVIRTVDIVVTATGNKN-VVT  179 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~~g~~~~---~l~e~~~~aDvvi~~~~~~~-~i~  179 (258)
                      .+.|++|+|+|+|.||+.+++.++..|+ +|+++++++.+.. .+...|....   ++.+.+.++|+||.|++.++ +++
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~  258 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIG  258 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence            3689999999999999999999999998 7999999988754 3445554433   34566778999999987664 666


Q ss_pred             HHHHhcC-----CCCcEEEecCCC-Chhhchhhh
Q psy16115        180 REHMDKM-----KNGCVVCNMGHS-NTEIDVNSL  207 (258)
Q Consensus       180 ~~~l~~~-----k~g~~ivnvg~~-~~~~~~~~l  207 (258)
                      .+.++.+     +.+.+++|++.+ |.+..+..+
T Consensus       259 ~~~l~~~~~~~~~~~~vviDla~Prdid~~v~~l  292 (423)
T PRK00045        259 KGMVERALKARRHRPLLLVDLAVPRDIEPEVGEL  292 (423)
T ss_pred             HHHHHHHHhhccCCCeEEEEeCCCCCCccccccc
Confidence            6666553     245799999987 555444333

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.70  E-value=2.5e-08  Score=93.96  Aligned_cols=88  Identities=41%  Similarity=0.647  Sum_probs=80.9

Q ss_pred             heeeeccccccccccCCCcchh------hHHHHHHHHHhCCCC--CCCCceEECChhhhHHHHhcccCccccccccCCHH
Q psy16115          8 QWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAG--RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDE   79 (258)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~--~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~   79 (258)
                      -|+++++||+|++|+++||.++      +|+|++.++++.. .  ++..+|+++|..+|+++|.+.+..+++.++.+++.
T Consensus       378 i~llaeGrlvNl~~~~GhP~~vMd~sfa~Q~la~~~l~~~~-~~~~~~~~v~~lp~~~d~~vA~~~L~~~g~~~~~lt~~  456 (476)
T PTZ00075        378 IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWENR-DTGKYPNGVYKLPKELDEKVARLHLKKLGAKLTKLTDK  456 (476)
T ss_pred             EEEEeCCCccccCCCCCCCeeEeeHHHHHHHHHHHHHHhcc-CccccCCceEECCHHHHHHHHHHHHHHcCCccccCCHH
Confidence            5899999999999999999984      8999999999883 4  68899999999999999999999999999999999


Q ss_pred             HHHhhhcccCCCCCcch
Q psy16115         80 QAKYMGLNKAGPFKPSY   96 (258)
Q Consensus        80 ~~~~~~~~~~g~~~~~~   96 (258)
                      +.+|+.....||+.+-.
T Consensus       457 q~~yl~~~~~gp~k~~~  473 (476)
T PTZ00075        457 QAEYIGVPVDGPYKSDH  473 (476)
T ss_pred             HHHhcCCCCCCCCCccc
Confidence            99999999999987643

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=98.70  E-value=1.6e-08  Score=92.59  Aligned_cols=111  Identities=14%  Similarity=0.056  Sum_probs=80.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-HhCCCccc----C---HHHHHHhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVV----K---LNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-~~~g~~~~----~---l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      .|++|+|.|.|.+|+.+++.++..|++|++++.++++...+ .+.|++..    +   +.+.....|+++.+++....++
T Consensus       180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~  259 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPLE  259 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHHHH
Confidence            78999999999999999999999999988888777665444 34676421    1   1122235799999988766665


Q ss_pred             HHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeecc
Q psy16115        180 REHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~  219 (258)
                       +.++.++++++++.+|..  ..+.....+..+++++.++..
T Consensus       260 -~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~  300 (357)
T PLN02514        260 -PYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFI  300 (357)
T ss_pred             -HHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEec
Confidence             788999999999999975  223333345556677776643

>PLN02494 adenosylhomocysteinase

Probab=98.69  E-value=3e-08  Score=93.23  Aligned_cols=91  Identities=38%  Similarity=0.664  Sum_probs=81.9

Q ss_pred             chheeeeccccccccccCCCcchh------hHHHHHHHHHhC-CCCCCCCceEECChhhhHHHHhcccCccccccccCCH
Q psy16115          6 TVQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNA-PAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD   78 (258)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~-~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~   78 (258)
                      .--|+++++||+|++|+++||.++      +|+|++.++++. +..++..+|+++|+.+|+++|.+.+..+++.++.+++
T Consensus       377 ~~i~ll~eGrlvNl~~~~GhP~evmd~sFa~Q~la~~~l~~~~~~~~~~~~v~~lP~~~D~~vA~~~L~~~g~~~~~lt~  456 (477)
T PLN02494        377 SGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSK  456 (477)
T ss_pred             CEEEEEeCCccccccCCCCCCcceeeHHHHHHHHHHHHHHhcccccccCCCcEECCHHHHHHHHHHHHHHcCCccccCCH
Confidence            345999999999999999999984      999999999986 1157888999999999999999999999999999999


Q ss_pred             HHHHhhhcccCCCCCcch
Q psy16115         79 EQAKYMGLNKAGPFKPSY   96 (258)
Q Consensus        79 ~~~~~~~~~~~g~~~~~~   96 (258)
                      .+.+|+.....||+.+..
T Consensus       457 ~Q~~yl~~~~~gp~k~~~  474 (477)
T PLN02494        457 DQADYINVPVEGPYKPAH  474 (477)
T ss_pred             HHHHhcCCCcCCCCCccc
Confidence            999999999999987643

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.68  E-value=1.2e-07  Score=87.89  Aligned_cols=104  Identities=24%  Similarity=0.357  Sum_probs=80.0

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHhCCCcccCHH---HHHHhCCeeeeccCccc-ccc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSVVKLN---EVIRTVDIVVTATGNKN-VVT  179 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~~g~~~~~l~---e~~~~aDvvi~~~~~~~-~i~  179 (258)
                      ++.+++++|||+|.||..+|+.|...|. +|++.+|+.++.. .|.+.|..+..++   +.+..+|+||.+|+.++ ++.
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~  254 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIIT  254 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence            3799999999999999999999999996 6999999998865 3667787766555   45678999999987665 666


Q ss_pred             HHHHhcC---CCCcEEEecCCC-ChhhchhhhcC
Q psy16115        180 REHMDKM---KNGCVVCNMGHS-NTEIDVNSLRT  209 (258)
Q Consensus       180 ~~~l~~~---k~g~~ivnvg~~-~~~~~~~~l~~  209 (258)
                      .+.+...   ++.-+++|++.+ |.+..+..+.+
T Consensus       255 ~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~  288 (414)
T COG0373         255 REMVERALKIRKRLLIVDIAVPRDVEPEVGELPN  288 (414)
T ss_pred             HHHHHHHHhcccCeEEEEecCCCCCCccccCcCC
Confidence            5655543   223589999998 66655544443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.67  E-value=2.2e-07  Score=84.21  Aligned_cols=127  Identities=11%  Similarity=0.122  Sum_probs=81.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC---------c-ccCHHHHHHhCCee
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF---------S-VVKLNEVIRTVDIV  168 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~---------~-~~~l~e~~~~aDvv  168 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|+++.....+..           .+.         . ..++++.+++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            68999999999999999999999999999999875433211           111         1 23677888999999


Q ss_pred             eeccC----ccccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        169 VTATG----NKNVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       169 i~~~~----~~~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      ++|..    .+..+.++..+.++++++|..-.++ ......+.+...+ +..+.+.+...+.     +   +.+.+|.++
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~-R~~g~HffnP~~~-----~---pLVEVv~g~  158 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPE-RCVVGHPFNPVYL-----L---PLVEVLGGE  158 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcc-cEEEEecCCcccc-----C---ceEEEeCCC
Confidence            99952    2223334555678888865322223 4444444443322 3444444433322     1   577777777


Q ss_pred             Ch
Q psy16115        244 KS  245 (258)
Q Consensus       244 ~~  245 (258)
                      +.
T Consensus       159 ~T  160 (321)
T PRK07066        159 RT  160 (321)
T ss_pred             CC
Confidence            65

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.66  E-value=9.8e-08  Score=84.77  Aligned_cols=90  Identities=16%  Similarity=0.235  Sum_probs=69.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeeccCccc---cccHHHHhc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKN---VVTREHMDK  185 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~~~~~~---~i~~~~l~~  185 (258)
                      +|+|||+|.||..++..|+..|.+|+++|+++...+.+.+.|..  ..+..+.++++|+|++|+....   .+ ++....
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~-~~l~~~   80 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPS-EQLIPA   80 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHH-HHHHHh
Confidence            69999999999999999999999999999999887777776642  2222356789999999964332   23 345566


Q ss_pred             CCCCcEEEecCCCChh
Q psy16115        186 MKNGCVVCNMGHSNTE  201 (258)
Q Consensus       186 ~k~g~~ivnvg~~~~~  201 (258)
                      ++++.+++|+|.-+.+
T Consensus        81 l~~~~ii~d~~Svk~~   96 (279)
T PRK07417         81 LPPEAIVTDVGSVKAP   96 (279)
T ss_pred             CCCCcEEEeCcchHHH
Confidence            7899999999877443

>PLN00203 glutamyl-tRNA reductase

Probab=98.65  E-value=1.5e-07  Score=90.32  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=79.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-C-CC--cc---cCHHHHHHhCCeeeeccCcc-c
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-D-GF--SV---VKLNEVIRTVDIVVTATGNK-N  176 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~-g~--~~---~~l~e~~~~aDvvi~~~~~~-~  176 (258)
                      ++.+++|+|||+|.||+.+++.|...|+ +|+++++++.+...... . +.  ..   .++.+.+.++|+||.||+.. .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p  342 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP  342 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence            3779999999999999999999999997 69999999888654332 2 22  11   24566788999999997654 4


Q ss_pred             cccHHHHhcCCC-------CcEEEecCCC-ChhhchhhhcCC
Q psy16115        177 VVTREHMDKMKN-------GCVVCNMGHS-NTEIDVNSLRTP  210 (258)
Q Consensus       177 ~i~~~~l~~~k~-------g~~ivnvg~~-~~~~~~~~l~~~  210 (258)
                      ++.++.++.+++       .-++||++.+ |.+..+..+.+-
T Consensus       343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l~~v  384 (519)
T PLN00203        343 LFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSELESA  384 (519)
T ss_pred             eeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccCCCC
Confidence            777788877632       2489999999 777766666543

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.65  E-value=4.5e-08  Score=91.31  Aligned_cols=89  Identities=25%  Similarity=0.325  Sum_probs=71.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE------EeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc--Ccccc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI------TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT--GNKNV  177 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~------~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~--~~~~~  177 (258)
                      .+.|++|+|||+|.+|+..|..++..|.+|++      +|.+......|.+.|+...+++++++.||+|+..+  ...+.
T Consensus        33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~~  112 (487)
T PRK05225         33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSD  112 (487)
T ss_pred             HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHHH
Confidence            36999999999999999999999999998873      34334445566678888889999999999999973  23455


Q ss_pred             ccHHHHhcCCCCcEEEe
Q psy16115        178 VTREHMDKMKNGCVVCN  194 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivn  194 (258)
                      +.++.+..||+|+.+..
T Consensus       113 v~~~i~p~LK~Ga~L~f  129 (487)
T PRK05225        113 VVRAVQPLMKQGAALGY  129 (487)
T ss_pred             HHHHHHhhCCCCCEEEe
Confidence            66788999999999864

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.64  E-value=2.5e-07  Score=82.23  Aligned_cols=134  Identities=20%  Similarity=0.235  Sum_probs=88.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEE--EeCChhhHHHHHhCCCccc---CH-HHHHHhCCeeeecc---Ccccccc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYI--TEIDPICALQACMDGFSVV---KL-NEVIRTVDIVVTAT---GNKNVVT  179 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~--~d~~~~~~~~a~~~g~~~~---~l-~e~~~~aDvvi~~~---~~~~~i~  179 (258)
                      ..+|+|+|+|.||..+|+.++..|..+.+  +|++......+.+.|....   +. .+....+|+||+|+   .+..++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~   82 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLK   82 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHH
Confidence            47899999999999999999999987644  5555555556666666432   22 56667799999995   3445553


Q ss_pred             HHHHhcCCCCcEEEecCCCChhh---chhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEI---DVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~---~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                       +....+|+|++++|++......   ....+.... ...+.+|....-  ....+-.+.++.|-..+...
T Consensus        83 -~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~--~~~~lf~~~~~vltp~~~~~  148 (279)
T COG0287          83 -ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPE--ADAGLFENAVVVLTPSEGTE  148 (279)
T ss_pred             -HhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCc--ccccccCCCEEEEcCCCCCC
Confidence             5555789999999999884332   223333333 667777654321  23334445666676666554

>PLN02256 arogenate dehydrogenase

Probab=98.64  E-value=1.9e-07  Score=84.10  Aligned_cols=111  Identities=13%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHH-hCCeeeeccCcc---ccccHHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIR-TVDIVVTATGNK---NVVTREH  182 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~-~aDvvi~~~~~~---~~i~~~~  182 (258)
                      .+.+|+|||+|.||..+++.++..|.+|+++|+++.. ..+...|+.. .+.++++. .+|+|++|+...   .++. +.
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~-~l  112 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLR-SL  112 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHH-hh
Confidence            6789999999999999999999999999999998743 4455566643 45677664 699999996433   3343 33


Q ss_pred             -HhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeeccCc
Q psy16115        183 -MDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       183 -l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                       ...++++++++|++...   .+.....+. ....+.+.+|..
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPma  154 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMF  154 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCC
Confidence             34578999999999862   222222222 234566666654

>PRK10083 putative oxidoreductase; Provisional

Probab=98.63  E-value=5.3e-08  Score=87.87  Aligned_cols=140  Identities=20%  Similarity=0.206  Sum_probs=92.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHHH----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGCV-IYITEIDPICALQACMDGFSVV------KLNEVIR----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~----~aDvvi~~~~~~  175 (258)
                      .|++|+|.|.|.+|+.+++.++. +|++ ++++++++.+...+.+.|++..      ++.+.+.    +.|+++.+++..
T Consensus       160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~  239 (339)
T PRK10083        160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACHP  239 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCCH
Confidence            78999999999999999999996 6996 7778988888877777776421      2333333    246999998866


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCCh--hhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhh
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQ  253 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~  253 (258)
                      ..+. +.++.++++++++++|..+.  ......+..+.+++.+.......|.         .++.++..++....+.+++
T Consensus       240 ~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~g~l~~~~~~~~  309 (339)
T PRK10083        240 SILE-EAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRLNANKFP---------VVIDWLSKGLIDPEKLITH  309 (339)
T ss_pred             HHHH-HHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEecChhhHH---------HHHHHHHcCCCChHHheee
Confidence            5665 78899999999999987521  1122222234555554432222233         3444555555444444566


Q ss_pred             hcCC
Q psy16115        254 TCPL  257 (258)
Q Consensus       254 ~~~~  257 (258)
                      ++|+
T Consensus       310 ~~~l  313 (339)
T PRK10083        310 TFDF  313 (339)
T ss_pred             eecH
Confidence            6654

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.61  E-value=3e-07  Score=82.66  Aligned_cols=91  Identities=21%  Similarity=0.304  Sum_probs=71.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCc---ccCHHHHHHhCCeeeeccCcccc--ccHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKNV--VTRE  181 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~~~~~--i~~~  181 (258)
                      .++|+|||+|.||..+++.++..|.  +|+++|+++.+...+.+.|..   ..+.++.++++|+|++|+.....  +..+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~   85 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE   85 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            4689999999999999999999885  799999999887777777642   23677788899999999754321  2224


Q ss_pred             HHhcCCCCcEEEecCCCC
Q psy16115        182 HMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~  199 (258)
                      ....++++.+++++|..+
T Consensus        86 l~~~l~~~~iv~dvgs~k  103 (307)
T PRK07502         86 IAPHLKPGAIVTDVGSVK  103 (307)
T ss_pred             HHhhCCCCCEEEeCccch
Confidence            455688999999998764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.60  E-value=1.3e-07  Score=83.81  Aligned_cols=92  Identities=26%  Similarity=0.330  Sum_probs=75.5

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc-------ccCHHHHHHhCCeeeec-----cC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-------VVKLNEVIRTVDIVVTA-----TG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~-------~~~l~e~~~~aDvvi~~-----~~  173 (258)
                      ....+|.|+|.|-+|...|+++..+|++|++.|++..|+..... .+.+       ..++++.+.++|++|-+     ..
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak  245 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK  245 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC
Confidence            35678999999999999999999999999999999888754322 2222       12578889999999997     35


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.++..+.++.||||+++||++..
T Consensus       246 aPkLvt~e~vk~MkpGsVivDVAiD  270 (371)
T COG0686         246 APKLVTREMVKQMKPGSVIVDVAID  270 (371)
T ss_pred             CceehhHHHHHhcCCCcEEEEEEEc
Confidence            6678888899999999999999754

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.59  E-value=3.1e-07  Score=73.89  Aligned_cols=105  Identities=20%  Similarity=0.180  Sum_probs=72.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHH-HhCCC-----cccCHHHHHHhCCeeeeccCcccc-
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQA-CMDGF-----SVVKLNEVIRTVDIVVTATGNKNV-  177 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a-~~~g~-----~~~~l~e~~~~aDvvi~~~~~~~~-  177 (258)
                      ++.+++++|+|+|.+|+.+++.+...| .+|+++|+++.+.... .+.+.     ...+..+.++++|+|+.|+..... 
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~   95 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP   95 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence            357899999999999999999999986 6899999998776542 23332     344667778899999999644332 


Q ss_pred             ccHH--HHhcCCCCcEEEecCCCCh-hhchhhhcCC
Q psy16115        178 VTRE--HMDKMKNGCVVCNMGHSNT-EIDVNSLRTP  210 (258)
Q Consensus       178 i~~~--~l~~~k~g~~ivnvg~~~~-~~~~~~l~~~  210 (258)
                      ....  ....++++.+++|++..+. ..+.+..++.
T Consensus        96 ~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~  131 (155)
T cd01065          96 GDELPLPPSLLKPGGVVYDVVYNPLETPLLKEARAL  131 (155)
T ss_pred             CCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHC
Confidence            1111  1123689999999987622 2344444443

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=98.59  E-value=8.5e-08  Score=89.52  Aligned_cols=140  Identities=14%  Similarity=0.112  Sum_probs=100.3

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCC---EEEEEeCChhhHHHHHhC--------CCc--cc------CHHHHHH----
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGC---VIYITEIDPICALQACMD--------GFS--VV------KLNEVIR----  163 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~---~Vi~~d~~~~~~~~a~~~--------g~~--~~------~l~e~~~----  163 (258)
                      .|++|+|+| .|.+|..+++.++..|+   +|++.|+++.+++.+++.        |++  ..      ++.+.+.    
T Consensus       175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~  254 (410)
T cd08238         175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG  254 (410)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence            689999998 69999999999999764   799999999988877765        443  11      2222221    


Q ss_pred             --hCCeeeeccCccccccHHHHhcCCCCcEEEec-CCC----ChhhchhhhcCCCceeeeeccCc-ceeecCCCccCCCc
Q psy16115        164 --TVDIVVTATGNKNVVTREHMDKMKNGCVVCNM-GHS----NTEIDVNSLRTPDLTWEKVRSQV-DHVIWPDVNLKNNT  235 (258)
Q Consensus       164 --~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnv-g~~----~~~~~~~~l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~  235 (258)
                        ..|+++.+++....+. +.++.+++++.++.+ +..    +....+..+..+++++.++.... .+|.         .
T Consensus       255 g~g~D~vid~~g~~~~~~-~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~  324 (410)
T cd08238         255 GQGFDDVFVFVPVPELVE-EADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMK---------E  324 (410)
T ss_pred             CCCCCEEEEcCCCHHHHH-HHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHH---------H
Confidence              4799999988777775 788889877765544 322    12344445666778888765422 3344         5


Q ss_pred             eeEEecCCChhHHHHHhhhcCC
Q psy16115        236 VIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       236 ~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      ++.++.+++.++.+.|+|++||
T Consensus       325 ~~~li~~g~i~~~~~it~~~~l  346 (410)
T cd08238         325 AIDLMAAGKLNPARMVTHIGGL  346 (410)
T ss_pred             HHHHHHcCCCchhhcEEEEecH
Confidence            6777888888888899999986

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.59  E-value=2.8e-07  Score=87.54  Aligned_cols=107  Identities=12%  Similarity=0.165  Sum_probs=79.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----CCc---ccCHHHHHH---hCCeeeeccC----cc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFS---VVKLNEVIR---TVDIVVTATG----NK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g~~---~~~l~e~~~---~aDvvi~~~~----~~  175 (258)
                      .+|+|||+|.||..+|+.|...|.+|.+||+++++.+...+.    |..   ..+++++++   ++|+|+++..    ..
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            379999999999999999999999999999999886544332    432   457888886   4898888732    33


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      .+++ +.+..+++|.++||.|.+   +.......+..+.+...+.
T Consensus        82 ~vi~-~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~flda  125 (470)
T PTZ00142         82 ETID-NLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGM  125 (470)
T ss_pred             HHHH-HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcC
Confidence            4553 566778999999999988   3334455666666655443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.58  E-value=3.3e-07  Score=67.96  Aligned_cols=86  Identities=20%  Similarity=0.276  Sum_probs=63.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC---CEEEE-EeCChhhHHHH-HhCCCcc--cCHHHHHHhCCeeeeccCcccc--ccHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG---CVIYI-TEIDPICALQA-CMDGFSV--VKLNEVIRTVDIVVTATGNKNV--VTRE  181 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G---~~Vi~-~d~~~~~~~~a-~~~g~~~--~~l~e~~~~aDvvi~~~~~~~~--i~~~  181 (258)
                      |++|||+|.||..+++.+...|   .+|++ +++++++.... .+.+...  .+..++++.+|+|++|.....+  +-.+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~   80 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLSE   80 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHHH
Confidence            6899999999999999999999   78884 59999987653 4556543  3689999999999999632221  2112


Q ss_pred             HHhcCCCCcEEEecCC
Q psy16115        182 HMDKMKNGCVVCNMGH  197 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~  197 (258)
                      . ....++.++|++.-
T Consensus        81 i-~~~~~~~~vis~~a   95 (96)
T PF03807_consen   81 I-PHLLKGKLVISIAA   95 (96)
T ss_dssp             H-HHHHTTSEEEEEST
T ss_pred             H-hhccCCCEEEEeCC
Confidence            2 45567888888753

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.58  E-value=5.6e-07  Score=80.55  Aligned_cols=131  Identities=14%  Similarity=0.151  Sum_probs=86.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccH------HHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTR------EHM  183 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~------~~l  183 (258)
                      +|+|||+|.||..+++.|...|.+|+++|+++. .....+.|.. ..+..++.+++|+|++|..+...+..      ..+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            699999999999999999999999999999875 3444456664 44788888999999999654432221      134


Q ss_pred             hcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhH
Q psy16115        184 DKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRL  247 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  247 (258)
                      ..+++|.++||++..+.+   ...+.+....+..... |....    ...-..++...++.+++..|
T Consensus        81 ~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg----~~~a~~g~l~~~~gG~~~~~  142 (292)
T PRK15059         81 KASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDA-PVSGG----EIGAREGTLSIMVGGDEAVF  142 (292)
T ss_pred             ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEe-cCCCC----HHHHhcCcEEEEEcCCHHHH
Confidence            457899999999987333   2234444444443332 32211    11223566666666655544

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=98.58  E-value=2.5e-07  Score=88.24  Aligned_cols=108  Identities=14%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----CCc----ccCHHHHHHh---CCeeeeccCccccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFS----VVKLNEVIRT---VDIVVTATGNKNVV  178 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g~~----~~~l~e~~~~---aDvvi~~~~~~~~i  178 (258)
                      .+||+||+|.||..+|+.|...|.+|.+|||++++.+...+.    |..    ..+++++++.   +|+|+++......+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            469999999999999999999999999999999886654332    532    3478888875   99999986444333


Q ss_pred             c---HHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        179 T---REHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       179 ~---~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      +   ...+..+++|.++||.|..   +.....+.+..+.+...+.
T Consensus        87 ~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~flda  131 (493)
T PLN02350         87 DQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGM  131 (493)
T ss_pred             HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeC
Confidence            2   2467788999999999988   3333445666665655443

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.55  E-value=6.9e-07  Score=79.12  Aligned_cols=85  Identities=19%  Similarity=0.345  Sum_probs=65.8

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeeccCccc---cccHHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKN---VVTREHM  183 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~~~~~~---~i~~~~l  183 (258)
                      +|+|||+|.||..+++.++..|.  +|+++|+++.+...+.+.|..  ..+..++. ++|+||+|+....   .+. +..
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~-~l~   79 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILP-KLL   79 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHH-HHh
Confidence            69999999999999999998885  799999998887777677753  33566654 5999999964433   332 344


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                      . ++++.+++++|..
T Consensus        80 ~-l~~~~iv~d~gs~   93 (275)
T PRK08507         80 D-IKENTTIIDLGST   93 (275)
T ss_pred             c-cCCCCEEEECccc
Confidence            4 7889999998876

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.55  E-value=4.6e-07  Score=80.78  Aligned_cols=129  Identities=12%  Similarity=0.124  Sum_probs=85.9

Q ss_pred             EEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcccccc------HHHHhcC
Q psy16115        114 LCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------REHMDKM  186 (258)
Q Consensus       114 IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~------~~~l~~~  186 (258)
                      |||+|.||..+++.|...|.+|++||+++.+.....+.|.. ..++.++++++|+|++|..+...+.      ......+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            58999999999999999999999999999887777677765 3478889999999999965433221      2345578


Q ss_pred             CCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhH
Q psy16115        187 KNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRL  247 (258)
Q Consensus       187 k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  247 (258)
                      +++.++||++..+.+   ...+.+....+...+. |....    ...-..++...++.++...|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg----~~~a~~g~l~~~~gg~~~~~  139 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVSGG----VGGARAGTLTFMVGGVAEEF  139 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCCCC----HHHHhhCcEEEEECCCHHHH
Confidence            899999999965322   1223444333443332 21110    11123456565666555554

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.55  E-value=5e-07  Score=81.05  Aligned_cols=103  Identities=19%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHH---HhCCeeeeccCcc---ccccHHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVI---RTVDIVVTATGNK---NVVTREHM  183 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~---~~aDvvi~~~~~~---~~i~~~~l  183 (258)
                      +|+|||+|.||..+++.+...|.+|.+||+++++.+...+.+.. ..+++++.   ..+|+|+++....   .+++ +..
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~-~l~   80 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLE-ELA   80 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHH-HHH
Confidence            69999999999999999999999999999999887766666653 33555544   4589999986443   3342 556


Q ss_pred             hcCCCCcEEEecCCCC---hhhchhhhcCCCcee
Q psy16115        184 DKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTW  214 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~  214 (258)
                      ..+++|.++||++...   .......+..+.+..
T Consensus        81 ~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~  114 (298)
T TIGR00872        81 PTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHL  114 (298)
T ss_pred             hhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeE
Confidence            6788999999998872   222334455544443

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02858 fructose-bisphosphate aldolase

Probab=98.54  E-value=4.9e-07  Score=95.58  Aligned_cols=137  Identities=12%  Similarity=0.044  Sum_probs=94.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcccccc------H
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------R  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~------~  180 (258)
                      .+++||+||+|.||..+|+.|...|.+|.+||+++.+.+...+.|+. ..++.++.+++|+||+|..+...+.      .
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            46789999999999999999999999999999999988777777775 4578999999999999964443332      1


Q ss_pred             HHHhcCCCCcEEEecCCCChh---hchhhhcCCC--ceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        181 EHMDKMKNGCVVCNMGHSNTE---IDVNSLRTPD--LTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~~~~---~~~~~l~~~~--i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      ..++.+++|.++||++..+.+   ...+.+....  +..... |...    ....-..++...++.+++..|.+
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa-PVsG----g~~~A~~G~L~imvGG~~~~~~~  151 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA-YVSK----GMSDLLNGKLMIIASGRSDAITR  151 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc-cCcC----CHHHHhcCCeEEEEcCCHHHHHH
Confidence            245678999999999987322   2233444433  333322 1111    01112346677777776665543

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.53  E-value=4.8e-07  Score=84.68  Aligned_cols=102  Identities=18%  Similarity=0.214  Sum_probs=76.1

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHH-HhCC-Cccc---CHHHHHHhCCeeeeccCccc-cc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDG-FSVV---KLNEVIRTVDIVVTATGNKN-VV  178 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a-~~~g-~~~~---~l~e~~~~aDvvi~~~~~~~-~i  178 (258)
                      .+.|++++|+|+|.+|+.++..|...|+ ++++++|++.+.... .+.+ ....   ++.+.+.++|+||.||+.++ ++
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi  257 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIV  257 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeE
Confidence            4789999999999999999999999997 699999998875443 3333 3333   34566778999999988776 55


Q ss_pred             cHHHHhcCCCCcEEEecCCC-ChhhchhhhcC
Q psy16115        179 TREHMDKMKNGCVVCNMGHS-NTEIDVNSLRT  209 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~  209 (258)
                      ..+..+  .+.-+++|.+.+ |.+..+..+.+
T Consensus       258 ~~~~~~--~~~~~~iDLavPRdidp~v~~l~~  287 (414)
T PRK13940        258 TCKYVG--DKPRVFIDISIPQALDPKLGELEQ  287 (414)
T ss_pred             CHHHhC--CCCeEEEEeCCCCCCCccccCcCC
Confidence            544432  234688999999 77766665544

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.53  E-value=7.9e-07  Score=65.01  Aligned_cols=67  Identities=37%  Similarity=0.498  Sum_probs=58.7

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      ..+.+++++|+|+|.+|+.++..+... +.+|.++|+                         |+++.|++..+.+.++.+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------di~i~~~~~~~~~~~~~~   73 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------DILVTATPAGVPVLEEAT   73 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------CEEEEcCCCCCCchHHHH
Confidence            346899999999999999999999998 467999976                         999999988888886668


Q ss_pred             hcCCCCcEEEecC
Q psy16115        184 DKMKNGCVVCNMG  196 (258)
Q Consensus       184 ~~~k~g~~ivnvg  196 (258)
                      +.++++.++++++
T Consensus        74 ~~~~~~~~v~~~a   86 (86)
T cd05191          74 AKINEGAVVIDLA   86 (86)
T ss_pred             HhcCCCCEEEecC
Confidence            8899999998863

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.53  E-value=4.4e-07  Score=83.49  Aligned_cols=90  Identities=26%  Similarity=0.438  Sum_probs=65.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----ccCHHHHHHhCCeeeeccCcc---ccccHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVKLNEVIRTVDIVVTATGNK---NVVTRE  181 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~~l~e~~~~aDvvi~~~~~~---~~i~~~  181 (258)
                      ++|+|||+|.||.++++.++..|..+.++++++.....+...+..     ..++++.++++|+||+|+...   .++. +
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~-~   79 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLA-E   79 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHH-H
Confidence            479999999999999999999999888888877654433333322     235677888999999996433   3332 3


Q ss_pred             HHh-cCCCCcEEEecCCCCh
Q psy16115        182 HMD-KMKNGCVVCNMGHSNT  200 (258)
Q Consensus       182 ~l~-~~k~g~~ivnvg~~~~  200 (258)
                      ... .++++++++|+|.-+.
T Consensus        80 l~~~~l~~~~ivtDv~SvK~   99 (359)
T PRK06545         80 LADLELKPGVIVTDVGSVKG   99 (359)
T ss_pred             HhhcCCCCCcEEEeCccccH
Confidence            333 3788999999998743

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.52  E-value=3.8e-07  Score=81.58  Aligned_cols=109  Identities=17%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-----------HhCC-------------CcccCHHHHHHhC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDG-------------FSVVKLNEVIRTV  165 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-----------~~~g-------------~~~~~l~e~~~~a  165 (258)
                      ++|+|||+|.||..+|+.+...|.+|+++|+++.+.+.+           .+.|             ....+..+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            689999999999999999999999999999998775432           1112             1122233567899


Q ss_pred             CeeeeccCc-c---ccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeecc
Q psy16115        166 DIVVTATGN-K---NVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       166 Dvvi~~~~~-~---~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~  219 (258)
                      |+|++|... .   ..+..+..+.++++++++ |++.-+.....+.+.. .....+.+.
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~-~~r~~g~h~  142 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQR-PQQVIGMHF  142 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCC-CcceEEEec
Confidence            999999532 2   223334445678898886 7776555444444432 223444433

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.51  E-value=1.8e-06  Score=81.46  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=69.0

Q ss_pred             EEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhH-HHHHhCCCcc-cCHHHHHHhCCeeeeccCc---cccccHHHHh
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDGFSV-VKLNEVIRTVDIVVTATGN---KNVVTREHMD  184 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~---~~~i~~~~l~  184 (258)
                      +|+||| +|.||..+++.++..|.+|+++|+++.+. ..+.+.|+.. .+..+.+.++|+|++|+..   ..++. +...
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~-~l~~   80 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIK-EVAP   80 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHH-HHHh
Confidence            799997 89999999999999999999999998764 3455567653 3677888899999999643   23442 4556


Q ss_pred             cCCCCcEEEecCCC
Q psy16115        185 KMKNGCVVCNMGHS  198 (258)
Q Consensus       185 ~~k~g~~ivnvg~~  198 (258)
                      .+++++++++++..
T Consensus        81 ~l~~~~iViDvsSv   94 (437)
T PRK08655         81 HVKEGSLLMDVTSV   94 (437)
T ss_pred             hCCCCCEEEEcccc
Confidence            68899999999975

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.51  E-value=1.9e-07  Score=87.33  Aligned_cols=85  Identities=41%  Similarity=0.602  Sum_probs=78.6

Q ss_pred             hheeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHH
Q psy16115          7 VQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQ   80 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~   80 (258)
                      --|+++++|++|+.++++||.++      .|+++..+++.+. .++..+|+.+|..+++++|.+.+..+++.++.+++.+
T Consensus       334 ~i~lLa~GrlvNl~~~~ghp~~vmd~sfa~q~l~~~~l~~~~-~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q  412 (425)
T PRK05476        334 RIILLAEGRLVNLGAATGHPSEVMDMSFANQALAQIELFTNR-GKLEPGVYVLPKELDEEVARLKLKALGVKLDELTEEQ  412 (425)
T ss_pred             EEEEEeCCcccccCCCCCCcceeeCHHHHHHHHHHHHHHhcc-CcCCCCeEECCHHHHHHHHHHHHHHcCCccccCCHHH
Confidence            36899999999999999999984      8999999999873 6888999999999999999999999999999999999


Q ss_pred             HHhhhcccCCCC
Q psy16115         81 AKYMGLNKAGPF   92 (258)
Q Consensus        81 ~~~~~~~~~g~~   92 (258)
                      .+|+..|+.|++
T Consensus       413 ~~y~~~~~~g~~  424 (425)
T PRK05476        413 AEYIGVWVEGPF  424 (425)
T ss_pred             HHHcCCCcCCCC
Confidence            999998888875

>PLN02712 arogenate dehydrogenase

Probab=98.50  E-value=6.4e-07  Score=88.55  Aligned_cols=112  Identities=15%  Similarity=0.220  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHH-HhCCeeeeccCc---cccccHHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVI-RTVDIVVTATGN---KNVVTREH  182 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~-~~aDvvi~~~~~---~~~i~~~~  182 (258)
                      +.++|+|||+|.||+.+++.++.+|.+|+++|++..+ ..+.+.|+.. .+.++++ ..+|+|++|+..   ..++..-.
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~  129 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP  129 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence            4578999999999999999999999999999998554 3466677653 4677755 469999999643   33443211


Q ss_pred             HhcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCc
Q psy16115        183 MDKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~  221 (258)
                      +..++++++|+|++.-+..   .....+. ....+.+.+|..
T Consensus       130 ~~~l~~g~iVvDv~SvK~~~~~~l~~~l~-~~~~~v~~HPMa  170 (667)
T PLN02712        130 LQRLKRNTLFVDVLSVKEFAKNLLLDYLP-EDFDIICSHPMF  170 (667)
T ss_pred             hhcCCCCeEEEECCCCcHHHHHHHHHhcC-CCCeEEeeCCcC
Confidence            2458899999999866432   1222232 234566666654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.50  E-value=5.6e-07  Score=80.22  Aligned_cols=98  Identities=17%  Similarity=0.232  Sum_probs=69.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------CC-----------------Cc-ccCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------DG-----------------FS-VVKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------~g-----------------~~-~~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|+++++.+.+.+       .+                 .. ..++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            57999999999999999999999999999999887655321       11                 11 2356778899


Q ss_pred             CCeeeeccCcccccc----HHHHhcCCCCcEE-EecCCCChhhchhhh
Q psy16115        165 VDIVVTATGNKNVVT----REHMDKMKNGCVV-CNMGHSNTEIDVNSL  207 (258)
Q Consensus       165 aDvvi~~~~~~~~i~----~~~l~~~k~g~~i-vnvg~~~~~~~~~~l  207 (258)
                      +|+|++|.....-+.    .+..+.+++++++ +|++..+.....+.+
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~  129 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFT  129 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhc
Confidence            999999964443222    2344567888877 677765555444433

>KOG4230|consensus

Probab=98.49  E-value=2.4e-07  Score=87.66  Aligned_cols=194  Identities=19%  Similarity=0.230  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCce-EECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCC--CCcchhhh---ccC
Q psy16115         30 PQALALIELFNAPAGR-YKSDV-YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP--FKPSYYSL---KRS  102 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V-~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~---~~~  102 (258)
                      .+++..+.-+|. |.. +++-| .++|.+++++..--++.+ ..+++++.+.+...+....-.+  ++|...+.   .+.
T Consensus        78 ~ell~~I~~lNe-D~tvHGiiVQLPLp~hide~~Vt~aI~p-eKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~  155 (935)
T KOG4230|consen   78 GELLREIKALNE-DPTVHGIIVQLPLPAHIDEDTVTEAIDP-EKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKE  155 (935)
T ss_pred             HHHHHHHHhccC-CCccceEEEeccCccccchhhHhhccCc-ccccccccccchhhhhccCCCceeeccChHHHHHHHHH
Confidence            567788888888 322 23333 288889987765545444 3477887766554443221111  34554442   333


Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      .+..+.|+..+|+|-.. +|..++..|+...++|+++...             ..++.+.+.++|+|+.+.|.++++..+
T Consensus       156 a~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK-------------T~~lae~v~~ADIvIvAiG~PefVKgd  222 (935)
T KOG4230|consen  156 AGVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK-------------TRNLAEKVSRADIVIVAIGQPEFVKGD  222 (935)
T ss_pred             cCCccccceeEEEecccccCChHHHHHHhcCceEEEecCC-------------CccHHHHhccCCEEEEEcCCcceeecc
Confidence            45678999999999998 8999999999999999998532             236788899999999999999999754


Q ss_pred             HHhcCCCCcEEEecCCCChhhchhhhcC-----CCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDVNSLRT-----PDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~-----~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                         |+|||+++||+|..-..+.-.  ++     |.++......+..-.....+.+.+=++-+||.+.
T Consensus       223 ---WiKpGavVIDvGINyvpD~~K--ksg~klvGDVdfe~Akevas~ITPVPGGVGPMTVAMLmqNt  284 (935)
T KOG4230|consen  223 ---WIKPGAVVIDVGINYVPDPSK--KSGFKLVGDVDFESAKEVASFITPVPGGVGPMTVAMLMQNT  284 (935)
T ss_pred             ---cccCCcEEEEccccccCCCCC--cccceEeeecchHhhhhhhhccccCCCCcchHHHHHHHHHH
Confidence               789999999999872221111  11     1122222222333345566666666666666543

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.48  E-value=1.7e-06  Score=77.11  Aligned_cols=126  Identities=14%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------------------------CCc-ccCHHHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------------------------GFS-VVKLNEVIR  163 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------------------------g~~-~~~l~e~~~  163 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|++++..+.+.+.                         ... ..++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            589999999999999999999999999999998765443211                         111 235777888


Q ss_pred             hCCeeeeccCcc-----ccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCcee
Q psy16115        164 TVDIVVTATGNK-----NVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVI  237 (258)
Q Consensus       164 ~aDvvi~~~~~~-----~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~  237 (258)
                      ++|+|++|....     .++ ++..+.++++++++..+.. ......+.+...+ +..+.+.....|        ....+
T Consensus        84 ~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~-r~vg~Hf~~p~~--------~~~lv  153 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFY-EELAKVAPEKTIFATNSSTLLPSQFAEATGRPE-KFLALHFANEIW--------KNNTA  153 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHH-HHHHhhCCCCCEEEECcccCCHHHHHhhcCCcc-cEEEEcCCCCCC--------cCCeE
Confidence            999999996433     223 2444567888888544444 4444444443322 344443322222        12555


Q ss_pred             EEecCCCh
Q psy16115        238 DLFRKPKS  245 (258)
Q Consensus       238 ~l~~~~~~  245 (258)
                      .++.+++.
T Consensus       154 evv~~~~t  161 (287)
T PRK08293        154 EIMGHPGT  161 (287)
T ss_pred             EEeCCCCC
Confidence            66655553

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.48  E-value=1.1e-07  Score=84.97  Aligned_cols=109  Identities=18%  Similarity=0.123  Sum_probs=79.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHH--HhCCeeeeccCccccccHHHHh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVI--RTVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~--~~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      .|.+|+|.|.|.+|+.+++.++..|++|++++.++++...+++.|+... +..+..  ...|+++.+.+....+. ..++
T Consensus       155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~~-~~~~  233 (319)
T cd08242         155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGLE-LALR  233 (319)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHHH-HHHH
Confidence            7899999999999999999999999999999888888777777776532 222212  24799999987655564 6788


Q ss_pred             cCCCCcEEEecCCC--ChhhchhhhcCCCceeeee
Q psy16115        185 KMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       185 ~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~  217 (258)
                      .+++++.++..+..  ........+..+++++.+.
T Consensus       234 ~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~  268 (319)
T cd08242         234 LVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGS  268 (319)
T ss_pred             HhhcCCEEEEEcccCCCCccCHHHheecceEEEEE
Confidence            89999999886654  2222333444555555543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PLN02858 fructose-bisphosphate aldolase

Probab=98.48  E-value=1.2e-06  Score=92.78  Aligned_cols=136  Identities=14%  Similarity=0.069  Sum_probs=93.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc----cc--cH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN----VV--TR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~----~i--~~  180 (258)
                      ..++|++||+|.||..+|+.|...|.+|++||+++.+.......|.. ..++.++++++|+|++|..++.    ++  ..
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            35889999999999999999999999999999999887666666654 4578899999999999965443    22  12


Q ss_pred             HHHhcCCCCcEEEecCCCChh---hchhhhcC--CCceeeeeccCcceeecCCCccCCCceeEEecCCChhHH
Q psy16115        181 EHMDKMKNGCVVCNMGHSNTE---IDVNSLRT--PDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~~~~---~~~~~l~~--~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~  248 (258)
                      ..+..+++|.++||++..+.+   ...+.+..  ..+..... |..    -....-..++...++.++...|.
T Consensus       403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDA-PVs----Gg~~~A~~G~L~imvgG~~~~~~  470 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDA-PVS----GGVKRAAMGTLTIMASGTDEALK  470 (1378)
T ss_pred             hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEc-cCC----CChhhhhcCCceEEEECCHHHHH
Confidence            346678999999999987322   22334443  33333322 111    11112344566667777666554

>KOG0409|consensus

Probab=98.47  E-value=6.8e-07  Score=78.99  Aligned_cols=92  Identities=17%  Similarity=0.206  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccccccHH-----
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTRE-----  181 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~-----  181 (258)
                      ..+++|.||+|.||..++..|...|.+|++||++..+.....+.|++. .++.|+.+.+|++|.+.+++.-...-     
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~  113 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS  113 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence            468999999999999999999999999999999999887777788875 57999999999999986554332211     


Q ss_pred             -HHhcCCCCcEE-EecCCCC
Q psy16115        182 -HMDKMKNGCVV-CNMGHSN  199 (258)
Q Consensus       182 -~l~~~k~g~~i-vnvg~~~  199 (258)
                       .++..+++... ||.+.-|
T Consensus       114 Gvl~g~~~g~~~~vDmSTid  133 (327)
T KOG0409|consen  114 GVLSGIRPGKKATVDMSTID  133 (327)
T ss_pred             cceeeccCCCceEEeccccC
Confidence             24455677666 7887764

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.47  E-value=3e-06  Score=73.17  Aligned_cols=103  Identities=18%  Similarity=0.216  Sum_probs=77.5

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCE---EEEEeCC----hhhH--------HHHHhCCC-cc-cCHHHHHHhCCe
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCV---IYITEID----PICA--------LQACMDGF-SV-VKLNEVIRTVDI  167 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~---Vi~~d~~----~~~~--------~~a~~~g~-~~-~~l~e~~~~aDv  167 (258)
                      ..+.+++++|+|+|..|+.++..|...|++   ++++|++    ..+.        ..+...+. .. .++.+.++++|+
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv  100 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV  100 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence            457899999999999999999999999974   9999998    3332        11222221 11 357778889999


Q ss_pred             eeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhc
Q psy16115        168 VVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  208 (258)
Q Consensus       168 vi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~  208 (258)
                      +|.+++ .++++.+.++.|+++.++.+.+.+..+.+.+...
T Consensus       101 lIgaT~-~G~~~~~~l~~m~~~~ivf~lsnP~~e~~~~~A~  140 (226)
T cd05311         101 FIGVSR-PGVVKKEMIKKMAKDPIVFALANPVPEIWPEEAK  140 (226)
T ss_pred             EEeCCC-CCCCCHHHHHhhCCCCEEEEeCCCCCcCCHHHHH
Confidence            999987 8889888899999999988888664444444333

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.45  E-value=1.3e-06  Score=76.77  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=68.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC----EEEEE-eCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcccccc---HH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC----VIYIT-EIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---RE  181 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~-d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~---~~  181 (258)
                      +|++||+|.||..+++.|...|.    +|+++ |+++.+...+.+.|+.. .+..++++++|+||+|.. +..+.   .+
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~~   80 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLTE   80 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHHH
Confidence            69999999999999999999887    78898 99988876666677754 467788889999999973 33332   12


Q ss_pred             HHhcCCCCcEEEecCCC-Chhhc
Q psy16115        182 HMDKMKNGCVVCNMGHS-NTEID  203 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~-~~~~~  203 (258)
                      ....++++.++|.+..+ +.+..
T Consensus        81 l~~~~~~~~~iIs~~~g~~~~~l  103 (266)
T PLN02688         81 LRPLLSKDKLLVSVAAGITLADL  103 (266)
T ss_pred             HHhhcCCCCEEEEecCCCcHHHH
Confidence            23456788888877555 44333

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.45  E-value=1.9e-06  Score=77.00  Aligned_cols=98  Identities=18%  Similarity=0.212  Sum_probs=67.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-----------HHhCCCc--------------ccCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-----------ACMDGFS--------------VVKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-----------a~~~g~~--------------~~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|++++.++.           ..+.|..              ..++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            58999999999999999999999999999999987654           2222321              1245 45789


Q ss_pred             CCeeeeccCccccccH---HHHhc-C-CCCcEEEecCCC-Chhhchhhhc
Q psy16115        165 VDIVVTATGNKNVVTR---EHMDK-M-KNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       165 aDvvi~~~~~~~~i~~---~~l~~-~-k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      +|+|++|.....-+..   ..++. + +++++++..+.. +...+...+.
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~  134 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATK  134 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcC
Confidence            9999999532222221   13344 4 789998776665 5555554443

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.45  E-value=8.7e-07  Score=81.71  Aligned_cols=102  Identities=9%  Similarity=0.083  Sum_probs=73.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHh-CCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCc---cccccHHH
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGN---KNVVTREH  182 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~-~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~---~~~i~~~~  182 (258)
                      ...+|+|||+ |.||.++|+.++. +|.+|+++|++..          ...++++.++++|+|++|+..   ..++. +.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~----------~~~~~~~~v~~aDlVilavPv~~~~~~l~-~l   71 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP----------GSLDPATLLQRADVLIFSAPIRHTAALIE-EY   71 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc----------ccCCHHHHhcCCCEEEEeCCHHHHHHHHH-HH
Confidence            5689999999 9999999999996 4789999997522          123567888999999999633   33443 33


Q ss_pred             Hh---cCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCc
Q psy16115        183 MD---KMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       183 l~---~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                      ..   .++++++++|+|.-+..+.-..+ .......+.+|..
T Consensus        72 ~~~~~~l~~~~iVtDVgSvK~~i~~~~~-~~~~~fVG~HPMa  112 (370)
T PRK08818         72 VALAGGRAAGQLWLDVTSIKQAPVAAML-ASQAEVVGLHPMT  112 (370)
T ss_pred             hhhhcCCCCCeEEEECCCCcHHHHHHHH-hcCCCEEeeCCCC
Confidence            33   27999999999987544433333 2234677777765

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.44  E-value=7.3e-07  Score=74.29  Aligned_cols=125  Identities=18%  Similarity=0.227  Sum_probs=72.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-c-------------ccCHHHHHHhC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-S-------------VVKLNEVIRTV  165 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-~-------------~~~l~e~~~~a  165 (258)
                      +|+|+|+|.||+.+|..+...|++|+++|++++.++.+.+           .|. .             ..+++++. ++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            6999999999999999999999999999999887554322           111 1             12455555 89


Q ss_pred             CeeeeccCcccc----ccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEe
Q psy16115        166 DIVVTATGNKNV----VTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLF  240 (258)
Q Consensus       166 Dvvi~~~~~~~~----i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~  240 (258)
                      |+|++|..-.--    +-++.-+.++++++|..-+.+ +...+...+... =+..+.+.+     .|..   -...+.++
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p-~R~ig~Hf~-----~P~~---~~~lVEvv  150 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRP-ERFIGMHFF-----NPPH---LMPLVEVV  150 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTG-GGEEEEEE------SSTT---T--EEEEE
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcC-ceEEEEecc-----cccc---cCceEEEe
Confidence            999999522221    222444466888888544444 666666655432 234444332     2221   12677777


Q ss_pred             cCCCh
Q psy16115        241 RKPKS  245 (258)
Q Consensus       241 ~~~~~  245 (258)
                      .+++.
T Consensus       151 ~~~~T  155 (180)
T PF02737_consen  151 PGPKT  155 (180)
T ss_dssp             E-TTS
T ss_pred             CCCCC
Confidence            77764

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.44  E-value=3.6e-07  Score=85.06  Aligned_cols=83  Identities=33%  Similarity=0.486  Sum_probs=76.3

Q ss_pred             heeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHH
Q psy16115          8 QWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQA   81 (258)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~   81 (258)
                      -|+++++|++|+.+.++||.++      .|+++..+++... +++..+|+++|+.+++++|.+.+..+++.++.+++.+.
T Consensus       318 i~ll~~GrlvNl~~~~ghp~~vmd~sfa~q~la~~~l~~~~-~~~~~~v~~lp~~~d~~va~~~l~~~g~~~~~lt~~q~  396 (406)
T TIGR00936       318 IYLLAEGRLVNLAAAEGHPSEVMDMSFANQALAAEYLWKNH-DKLEPGVYRLPKELDEMVARLKLEAMGIEIDELTEEQK  396 (406)
T ss_pred             EEEEeCCceecccCCCCCcceeeCHHHHHHHHHHHHHHhcc-cccCCCeEECCHHHHHHHHHHHHHHcCceeccCCHHHH
Confidence            3899999999999999999984      8999999999984 67889999999999999999999999999999999999


Q ss_pred             HhhhcccCCC
Q psy16115         82 KYMGLNKAGP   91 (258)
Q Consensus        82 ~~~~~~~~g~   91 (258)
                      +|+..|+.|+
T Consensus       397 ~y~~~~~~g~  406 (406)
T TIGR00936       397 EYLGSWEEGT  406 (406)
T ss_pred             HHhcCCcCCC
Confidence            9998777663

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.43  E-value=1.3e-06  Score=77.56  Aligned_cols=98  Identities=18%  Similarity=0.292  Sum_probs=72.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC----EEEEEeCChhhHHHHHh-CCCcc-cCHHHHHHhCCeeeeccCcccccc---H
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVT---R  180 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~d~~~~~~~~a~~-~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~---~  180 (258)
                      .++++||+|.||.++++.+...|.    +|+++|+++.+.+.+.+ .|+.. .+..++++++|+||+|... ..+.   .
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl~   81 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVIN   81 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHHH
Confidence            579999999999999999998774    59999999988766543 67643 3677888999999999643 3222   1


Q ss_pred             HHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115        181 EHMDKMKNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      +.-..++++.++|.+.-| +.+.+-+.+.
T Consensus        82 ~l~~~~~~~~lvISi~AGi~i~~l~~~l~  110 (272)
T PRK12491         82 QIKDQIKNDVIVVTIAAGKSIKSTENEFD  110 (272)
T ss_pred             HHHHhhcCCcEEEEeCCCCcHHHHHHhcC
Confidence            222345778899999888 6655555553

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=98.42  E-value=3.4e-07  Score=83.57  Aligned_cols=110  Identities=21%  Similarity=0.284  Sum_probs=78.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHH---HHH------HhCCeeeec
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLN---EVI------RTVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~---e~~------~~aDvvi~~  171 (258)
                      .|++|+|.|.|.+|+.+++.++..|+ +|+++++++.+...+.+.|++..      +..   +.+      ...|+++.+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~  256 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA  256 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence            78999999999999999999999999 89999988888776667776321      111   112      137999999


Q ss_pred             cCccccccHHHHhcCCCCcEEEecCCCC--hhhchhh--hcCCCceeeeec
Q psy16115        172 TGNKNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNS--LRTPDLTWEKVR  218 (258)
Q Consensus       172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~--l~~~~i~~~~~~  218 (258)
                      .+....+. +.++.++++++++.+|..+  ....+..  +..+.+++.+..
T Consensus       257 ~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (361)
T cd08231         257 SGHPAAVP-EGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVH  306 (361)
T ss_pred             CCChHHHH-HHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcc
Confidence            87655564 7889999999999998652  1222222  344455655543

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.42  E-value=1.2e-06  Score=79.51  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=70.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--------C------Cc-ccCHHHHHHhCCeeeeccC
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------G------FS-VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--------g------~~-~~~l~e~~~~aDvvi~~~~  173 (258)
                      ..+|+|||+|.||..++..|...|.+|++|++++.+.+.....        |      +. ..++.+.++.+|+|+++..
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            3489999999999999999999999999999988765443332        2      11 2367788889999999976


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+  .+.++.++++..+++++.|
T Consensus        84 ~~~~--~~v~~~l~~~~~vi~~~~G  106 (328)
T PRK14618         84 SKAL--RETLAGLPRALGYVSCAKG  106 (328)
T ss_pred             hHHH--HHHHHhcCcCCEEEEEeec
Confidence            6543  4778889999999999886

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=98.40  E-value=3.3e-07  Score=71.38  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCccccccHHHHhcC
Q psy16115        119 EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGNKNVVTREHMDKM  186 (258)
Q Consensus       119 ~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~~~~i~~~~l~~~  186 (258)
                      +||..+++.++.+|++|+++++++.+.+.+++.|++.      .++.+.++      ..|+++.|+++...++ ..++.+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~-~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQ-EAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHH-HHHHHE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHH-HHHHHh
Confidence            4899999999999999999999999998899998652      12333332      3799999999888886 899999


Q ss_pred             CCCcEEEecCCCC---hhhchhhhcCCCceeeeeccCc-ceee
Q psy16115        187 KNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQV-DHVI  225 (258)
Q Consensus       187 k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~~-~~~~  225 (258)
                      +++++++.+|...   .......+..+++++.++.... ++|.
T Consensus        80 ~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  122 (130)
T PF00107_consen   80 RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQ  122 (130)
T ss_dssp             EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHH
T ss_pred             ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHH
Confidence            9999999999883   3344566777888888886554 4444

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=98.38  E-value=8.1e-07  Score=80.75  Aligned_cols=91  Identities=22%  Similarity=0.266  Sum_probs=72.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHH----HH--HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNE----VI--RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e----~~--~~aDvvi~~~~~  174 (258)
                      .|++|+|.|.|.+|+.+++.++..|+ .|++++.++++...+.+.|++..      ++.+    ..  +..|+++.+++.
T Consensus       166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (351)
T cd08285         166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGG  245 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCC
Confidence            68999999999999999999999999 58889998888777777776321      2212    22  147999999887


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~  199 (258)
                      ...+. +.++.++++++++.+|..+
T Consensus       246 ~~~~~-~~~~~l~~~G~~v~~g~~~  269 (351)
T cd08285         246 QDTFE-QALKVLKPGGTISNVNYYG  269 (351)
T ss_pred             HHHHH-HHHHHhhcCCEEEEecccC
Confidence            66665 7889999999999998763

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.38  E-value=2.5e-06  Score=77.73  Aligned_cols=98  Identities=20%  Similarity=0.348  Sum_probs=74.5

Q ss_pred             CcccCCCEEEEEcC-chHHHHHHHHHHh-CCC-EEEEEeCChhhHHHH-HhCC-CcccCHHHHHHhCCeeeeccCcc-c-
Q psy16115        104 DVMFGGKQVVLCGY-GEVGKGCCQSLKG-LGC-VIYITEIDPICALQA-CMDG-FSVVKLNEVIRTVDIVVTATGNK-N-  176 (258)
Q Consensus       104 ~~~l~g~~V~IiG~-G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a-~~~g-~~~~~l~e~~~~aDvvi~~~~~~-~-  176 (258)
                      +.++.|++|+|+|+ |.||..+++.|.. .|. +++++++++.++... .+.+ .+..++++.+.++|+|+.+++.. . 
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~  229 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV  229 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC
Confidence            34689999999998 8999999999975 565 799999987776542 2222 23456788899999999987664 3 


Q ss_pred             cccHHHHhcCCCCcEEEecCCC-Chhhch
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS-NTEIDV  204 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~-~~~~~~  204 (258)
                      .++++.   ++++.+++|+|++ |.+..+
T Consensus       230 ~I~~~~---l~~~~~viDiAvPRDVd~~v  255 (340)
T PRK14982        230 EIDPET---LKKPCLMIDGGYPKNLDTKV  255 (340)
T ss_pred             cCCHHH---hCCCeEEEEecCCCCCCccc
Confidence            366553   5899999999999 665444

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.38  E-value=1e-06  Score=83.68  Aligned_cols=106  Identities=12%  Similarity=0.242  Sum_probs=76.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---C--Cc-ccCHHHHHH---hCCeeeeccCc----ccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---G--FS-VVKLNEVIR---TVDIVVTATGN----KNV  177 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---g--~~-~~~l~e~~~---~aDvvi~~~~~----~~~  177 (258)
                      .|+|||+|.||..+|+.+...|.+|++||+++++.+...+.   |  +. ..++++++.   ++|+|+++...    ..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            38999999999999999999999999999999887665544   2  22 345666664   58999988533    344


Q ss_pred             ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      ++ +.+..+++|.++||.|..   +.......+..+.+...+.
T Consensus        81 i~-~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvda  122 (467)
T TIGR00873        81 IN-QLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGS  122 (467)
T ss_pred             HH-HHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcC
Confidence            43 556778999999999976   2233345565555554443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.36  E-value=2.6e-06  Score=76.08  Aligned_cols=97  Identities=16%  Similarity=0.206  Sum_probs=66.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIR  163 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~  163 (258)
                      -++|+|||+|.||..+|..+...|.+|+++|++++..+.+.+           .|.             .. .++ +.++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~   82 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-EDLA   82 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-HHhc
Confidence            368999999999999999999999999999999887654321           121             11 234 4477


Q ss_pred             hCCeeeeccCcc----ccccHHHHhcCCCCcEEE-ecCCCChhhchhh
Q psy16115        164 TVDIVVTATGNK----NVVTREHMDKMKNGCVVC-NMGHSNTEIDVNS  206 (258)
Q Consensus       164 ~aDvvi~~~~~~----~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~  206 (258)
                      ++|+|++|....    ..+-++..+.++++++++ |++.-+...+.+.
T Consensus        83 ~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~  130 (292)
T PRK07530         83 DCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASA  130 (292)
T ss_pred             CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhh
Confidence            899999996332    122234455678898887 6665454433333

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.35  E-value=4.4e-06  Score=77.34  Aligned_cols=78  Identities=17%  Similarity=0.333  Sum_probs=61.8

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHHH
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHM  183 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~l  183 (258)
                      ..++|+||| +|.||..+|+.++..|..|+++|+++.            .+.++.++++|+|++|+...   .++. +..
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------~~~~~~~~~aDlVilavP~~~~~~~~~-~l~  163 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------DRAEDILADAGMVIVSVPIHLTEEVIA-RLP  163 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------hhHHHHHhcCCEEEEeCcHHHHHHHHH-HHh
Confidence            348999999 999999999999999999999998642            24567788999999996332   3442 333


Q ss_pred             hcCCCCcEEEecCCCC
Q psy16115        184 DKMKNGCVVCNMGHSN  199 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~  199 (258)
                      . +++|++++|+|...
T Consensus       164 ~-l~~~~iv~Dv~SvK  178 (374)
T PRK11199        164 P-LPEDCILVDLTSVK  178 (374)
T ss_pred             C-CCCCcEEEECCCcc
Confidence            3 89999999998863

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.34  E-value=4.6e-06  Score=69.95  Aligned_cols=98  Identities=20%  Similarity=0.140  Sum_probs=66.9

Q ss_pred             cccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-C----CCc-----cc---CHHHHHHhCCeeee
Q psy16115        105 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-D----GFS-----VV---KLNEVIRTVDIVVT  170 (258)
Q Consensus       105 ~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~----g~~-----~~---~l~e~~~~aDvvi~  170 (258)
                      .++++++++|+|. |.+|+.+++.+...|.+|++++|++.+.+...+ .    +..     ..   ++.+.++++|+|+.
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            4578999999996 999999999999999999999998876543222 1    111     11   23466788999999


Q ss_pred             ccCccccccHHHHhcCCCCcEEEecCCC-Chhh
Q psy16115        171 ATGNKNVVTREHMDKMKNGCVVCNMGHS-NTEI  202 (258)
Q Consensus       171 ~~~~~~~i~~~~l~~~k~g~~ivnvg~~-~~~~  202 (258)
                      ++..........-...+++.+++|+... +...
T Consensus       104 at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~  136 (194)
T cd01078         104 AGAAGVELLEKLAWAPKPLAVAADVNAVPPVGI  136 (194)
T ss_pred             CCCCCceechhhhcccCceeEEEEccCCCCCCc
Confidence            8644432111122234567899999887 4333

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.31  E-value=2.3e-06  Score=82.16  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=68.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-----------HhCCC-------------c-ccCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-----------~~~g~-------------~-~~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|..|+++|++++.++.+           .+.|.             . ..++++ +.+
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            689999999999999999999999999999999876653           23341             2 124544 568


Q ss_pred             CCeeeeccCccccccH----HHHhcCCCCcEE-EecCCCChhhchhhh
Q psy16115        165 VDIVVTATGNKNVVTR----EHMDKMKNGCVV-CNMGHSNTEIDVNSL  207 (258)
Q Consensus       165 aDvvi~~~~~~~~i~~----~~l~~~k~g~~i-vnvg~~~~~~~~~~l  207 (258)
                      ||+||+|.....-+..    +.-+.+++++++ +|+|.-+...+...+
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~  134 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAAL  134 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhc
Confidence            9999999533332222    323346888888 588876655443433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.30  E-value=3.6e-06  Score=78.95  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=64.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---ccCHHHHH---------------HhCCeeeec
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNEVI---------------RTVDIVVTA  171 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~---------------~~aDvvi~~  171 (258)
                      ++|+|||+|.||..+|..|...|.+|+++|+++.+.+. ...|..   ...+++++               +++|++++|
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            68999999999999999999999999999999988654 333321   11334432               368999999


Q ss_pred             cCcc---------cccc---HHHHhcCCCCcEEEecCCC
Q psy16115        172 TGNK---------NVVT---REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~~~~---------~~i~---~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..++         ..+.   ....+.+++|.++|+.+..
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv  121 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS  121 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence            7664         1221   2345668999999998875

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.30  E-value=7.4e-06  Score=78.57  Aligned_cols=100  Identities=11%  Similarity=0.110  Sum_probs=66.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------------------CC-Cc-ccCHHHHHHhCCee
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVDIV  168 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------------------~g-~~-~~~l~e~~~~aDvv  168 (258)
                      ++|+|||+|.||..+|..+...|.+|++||+++.+.+...+                   .+ +. ..++.+.+++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            58999999999999999999999999999999887543211                   12 22 23677889999999


Q ss_pred             eeccCcccccc----HHHHhcCCCCcEEEecCCC-ChhhchhhhcC
Q psy16115        169 VTATGNKNVVT----REHMDKMKNGCVVCNMGHS-NTEIDVNSLRT  209 (258)
Q Consensus       169 i~~~~~~~~i~----~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~  209 (258)
                      ++|.....-+.    ++.-+.++++++|.....+ +...+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCC
Confidence            99954332121    2333446777655444334 44444444433

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.30  E-value=6.1e-06  Score=72.67  Aligned_cols=97  Identities=20%  Similarity=0.205  Sum_probs=76.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC----CEEEEEeCChhhHH-HHHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPICAL-QACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d~~~~~~~-~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++++||+|.||..++.-+...|    .+|+++++++++.. .+.++|.. ..+..+...++|+||+|. .+..+. +.+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~-~vl   79 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLE-EVL   79 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHH-HHH
Confidence            57999999999999999999999    36999999998875 55667766 456778889999999997 344443 566


Q ss_pred             hcCC---CCcEEEecCCC-Chhhchhhhc
Q psy16115        184 DKMK---NGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       184 ~~~k---~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      +.++   ++..+|-+.-| ..+.+-+.+.
T Consensus        80 ~~l~~~~~~~lvISiaAGv~~~~l~~~l~  108 (266)
T COG0345          80 SKLKPLTKDKLVISIAAGVSIETLERLLG  108 (266)
T ss_pred             HHhhcccCCCEEEEEeCCCCHHHHHHHcC
Confidence            6666   68888888887 6666666665

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.30  E-value=7.2e-06  Score=73.21  Aligned_cols=97  Identities=18%  Similarity=0.204  Sum_probs=65.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh--------------CCC-------------cc-cCHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------------DGF-------------SV-VKLNEV  161 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~--------------~g~-------------~~-~~l~e~  161 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|+++++.+.+.+              .+.             .. .+. +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            68999999999999999999999999999999887653221              111             11 123 45


Q ss_pred             HHhCCeeeeccCcccccc----HHHHhcCCCCcEEEecCCC-Chhhchhhh
Q psy16115        162 IRTVDIVVTATGNKNVVT----REHMDKMKNGCVVCNMGHS-NTEIDVNSL  207 (258)
Q Consensus       162 ~~~aDvvi~~~~~~~~i~----~~~l~~~k~g~~ivnvg~~-~~~~~~~~l  207 (258)
                      ++++|+|++|.....-+.    ++.-+.++++++++....+ ......+.+
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~  133 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATAL  133 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhc
Confidence            788999999964332121    2333456888888766555 433333434

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.29  E-value=4.9e-06  Score=74.95  Aligned_cols=101  Identities=22%  Similarity=0.328  Sum_probs=74.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHh-C---CCc--ccCHHHHHHhCCeeeeccCccc-cc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM-D---GFS--VVKLNEVIRTVDIVVTATGNKN-VV  178 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~-~---g~~--~~~l~e~~~~aDvvi~~~~~~~-~i  178 (258)
                      ..++++|+|+|.+|+..++.+.. ++. +|.++++++.+.+...+ .   +..  ..+.++++.++|+|+.||.... ++
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~Pl~  203 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRTPVY  203 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCCcee
Confidence            57899999999999999999975 675 69999999887554222 1   222  3478889999999999975554 55


Q ss_pred             cHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115        179 TREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL  212 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i  212 (258)
                      + .   ++|+|+.+..+|..   ..|.+.+.+..-.+
T Consensus       204 ~-~---~~~~g~hi~~iGs~~p~~~El~~~~~~~a~v  236 (304)
T PRK07340        204 P-E---AARAGRLVVAVGAFTPDMAELAPRTVRGSRL  236 (304)
T ss_pred             C-c---cCCCCCEEEecCCCCCCcccCCHHHHhhCeE
Confidence            4 2   47999999999976   34544444444344

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.29  E-value=4.3e-06  Score=75.49  Aligned_cols=110  Identities=13%  Similarity=0.085  Sum_probs=80.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH---HhCCeeeeccCccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI---RTVDIVVTATGNKNVV  178 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~---~~aDvvi~~~~~~~~i  178 (258)
                      .|++|+|.|.|.+|+.+++.++.+|++|+++++++++...+.+.|++..      ++.+.+   ...|+++.+.+....+
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~  242 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAKAI  242 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchHHH
Confidence            6899999999999999999999999999999998888777777776321      222222   2479999887656566


Q ss_pred             cHHHHhcCCCCcEEEecCCCChh--hchhhhcCCCceeeeec
Q psy16115        179 TREHMDKMKNGCVVCNMGHSNTE--IDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~~~~--~~~~~l~~~~i~~~~~~  218 (258)
                      . ..++.+++++.++++|..+..  .....+..+.+++.+..
T Consensus       243 ~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~  283 (333)
T cd08296         243 S-ALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWP  283 (333)
T ss_pred             H-HHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeC
Confidence            5 788899999999999876322  22222334566666553

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.29  E-value=3.1e-06  Score=79.22  Aligned_cols=88  Identities=18%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------------------CC-Cc-ccCHHHHHHhCCeee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVDIVV  169 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------------------~g-~~-~~~l~e~~~~aDvvi  169 (258)
                      +|+|||+|.||..+|..|...|.+|+++|+++.+......                   .| .. ..++.+.++++|+||
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi   81 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII   81 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence            6999999999999999999999999999999887643221                   12 22 235677888999999


Q ss_pred             eccCcccc---------cc---HHHHhcCCCCcEEEecCCC
Q psy16115        170 TATGNKNV---------VT---REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       170 ~~~~~~~~---------i~---~~~l~~~k~g~~ivnvg~~  198 (258)
                      +|..++..         +.   ....+.+++|.++++.+.-
T Consensus        82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv  122 (411)
T TIGR03026        82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV  122 (411)
T ss_pred             EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence            99766531         11   1334567899999998854

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.28  E-value=2.4e-06  Score=75.67  Aligned_cols=91  Identities=26%  Similarity=0.408  Sum_probs=71.9

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCcccCHHHHHHhCCeeeecc---CccccccHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH  182 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~~~~l~e~~~~aDvvi~~~---~~~~~i~~~~  182 (258)
                      |+||+|+|||+|.-|+.-|+.||..|.+|++--+.... ...|.+.|+++.+.+|+++.+|+|+.-+   ....++.++.
T Consensus        16 LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~~I   95 (338)
T COG0059          16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEKEI   95 (338)
T ss_pred             hcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHHHh
Confidence            68999999999999999999999999997765444333 6678899999999999999999998863   2334555455


Q ss_pred             HhcCCCCcEEEecCCC
Q psy16115        183 MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~  198 (258)
                      -..|+.|..+. .+.|
T Consensus        96 ~p~Lk~G~aL~-FaHG  110 (338)
T COG0059          96 APNLKEGAALG-FAHG  110 (338)
T ss_pred             hhhhcCCceEE-eccc
Confidence            56789888664 3444

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=98.27  E-value=1.4e-06  Score=79.15  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CH-HHH---HH--hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KL-NEV---IR--TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l-~e~---~~--~aDvvi~~~~~  174 (258)
                      .|++|+|.|.|.+|+.+++.++..|++ +++.++++.+...+.+.|++..      ++ +++   ..  +.|+++.+.+.
T Consensus       174 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~  253 (350)
T cd08256         174 FDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGH  253 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            789999999999999999999999985 7778888887766666665321      12 222   21  37999999875


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. +.++.++++++++++|..
T Consensus       254 ~~~~~-~~~~~l~~~G~~v~~g~~  276 (350)
T cd08256         254 PSAVE-QGLNMIRKLGRFVEFSVF  276 (350)
T ss_pred             hHHHH-HHHHHhhcCCEEEEEccC
Confidence            55565 678899999999999865

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>KOG0089|consensus

Probab=98.27  E-value=3.5e-06  Score=73.26  Aligned_cols=198  Identities=18%  Similarity=0.186  Sum_probs=124.1

Q ss_pred             hHHHHHHHHHhCCCCCCCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCC--CCCcchhh---hccCc
Q psy16115         30 PQALALIELFNAPAGRYKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG--PFKPSYYS---LKRST  103 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~---~~~~~  103 (258)
                      .++++.+...+....-+++.|. ++|.+++++...-++.+ ..++++....+..++....+.  ..++...+   +...+
T Consensus        82 ~~l~~~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~-eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~  160 (309)
T KOG0089|consen   82 DELESAIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSP-EKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERT  160 (309)
T ss_pred             HHHHHHHHHhcCCCceeeEEEEeeccccccHHHHHhhcCc-ccccccccccchhhhccccccccccCCchHHHHHHHHHh
Confidence            4666777776661122455554 89999987766555433 356777666555554433333  23444444   33445


Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEE--------EEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCc
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIY--------ITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi--------~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~  174 (258)
                      +..+.||++.|+|-.. +|+.+|..|..-|+++.        .+.|...           ...++.-.+.+|+++.+.+-
T Consensus       161 gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~-----------~~~lk~ht~~adivi~a~g~  229 (309)
T KOG0089|consen  161 GIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTS-----------KPQLKHHTRDADIVISAVGI  229 (309)
T ss_pred             CCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCC-----------chhHHHHHHhcceeehhcCC
Confidence            7778999999999998 89999999999876543        3333221           11345667889999999999


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCChhhchhhh---cCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL---RTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l---~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      ++++..+   +.|+|+.++|+|...+.+...+.   --+.++..+.+-........+|...+-++-+|+.+
T Consensus       230 p~li~~d---~Ik~Ga~vidvgin~v~dp~~a~~~klvgdvdFe~~~~kag~itpVPggvGpmTiAMLl~N  297 (309)
T KOG0089|consen  230 PNLITSD---MIKPGAAVIDVGINRVHDPSTAVGIKLVGDVDFEEASKKAGAITPVPGGVGPMTIAMLLRN  297 (309)
T ss_pred             Ccccccc---eeecCceeEecCCCcccccccceeeEEeeeccHHHhhhhcCccccCCCCCCchhHHHHHHH
Confidence            9999855   47999999999988444333221   11223333232222334455567776676666654

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=98.26  E-value=2.2e-06  Score=78.60  Aligned_cols=90  Identities=21%  Similarity=0.297  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~  173 (258)
                      .|++|+|.|.|.+|..+++.++.+|++ |+++++++.+...+.+.|++. .       +..+.+.     ..|+++.+++
T Consensus       183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~g  262 (365)
T cd05279         183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVIG  262 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCcEEEECCC
Confidence            689999999999999999999999996 788888888877666777531 1       1112222     3799999987


Q ss_pred             ccccccHHHHhcCC-CCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMK-NGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k-~g~~ivnvg~~  198 (258)
                      ....+. +.++.++ ++++++.+|..
T Consensus       263 ~~~~~~-~~~~~l~~~~G~~v~~g~~  287 (365)
T cd05279         263 SADTLK-QALDATRLGGGTSVVVGVP  287 (365)
T ss_pred             CHHHHH-HHHHHhccCCCEEEEEecC
Confidence            656665 6788899 99999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.26  E-value=5.1e-06  Score=83.26  Aligned_cols=89  Identities=19%  Similarity=0.266  Sum_probs=69.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHhCCCc---ccCHHHHHHhCCeeeeccCccc---cccHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNKN---VVTRE  181 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~~~~---~i~~~  181 (258)
                      ++|+|||+|.||..+++.++..|  .+|+++|+++.+...+.+.|+.   ..++++.++++|+|++|+....   ++. +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~-~   82 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLA-D   82 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHH-H
Confidence            78999999999999999999998  4799999999887777777763   3457788889999999975432   221 2


Q ss_pred             HHhcCCCCcEEEecCCCC
Q psy16115        182 HMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~  199 (258)
                      .-+.++++.++++++..+
T Consensus        83 l~~~~~~~~ii~d~~svk  100 (735)
T PRK14806         83 LKPLLSEHAIVTDVGSTK  100 (735)
T ss_pred             HHHhcCCCcEEEEcCCCc
Confidence            333467889999998764

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.26  E-value=6.4e-06  Score=73.14  Aligned_cols=109  Identities=16%  Similarity=0.223  Sum_probs=71.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-----------HHhCCC-------------c-ccCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-----------ACMDGF-------------S-VVKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-----------a~~~g~-------------~-~~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|+++++.+.           ..+.|.             . ..+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            58999999999999999999999999999999987642           222331             1 12333 4788


Q ss_pred             CCeeeeccCc-----cccccHHHHhcCCCCcEE-EecCCCChhhchhhhcCCCceeeeeccCc
Q psy16115        165 VDIVVTATGN-----KNVVTREHMDKMKNGCVV-CNMGHSNTEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       165 aDvvi~~~~~-----~~~i~~~~l~~~k~g~~i-vnvg~~~~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                      +|+|++|...     ..++ ++..+.+++++++ .|++.-+...+...+...+ ...+.++..
T Consensus        83 aDlVi~av~e~~~~k~~~~-~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~-r~ig~h~~~  143 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIF-AQLDEIAKPEAILATNTSSLSITELAAATKRPD-KVIGMHFFN  143 (282)
T ss_pred             CCeeeecccccHHHHHHHH-HHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCc-ceEEeeccC
Confidence            9999999632     1233 2444567888888 4444436665555554332 344554433

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.25  E-value=4.2e-06  Score=75.37  Aligned_cols=88  Identities=16%  Similarity=0.203  Sum_probs=66.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC--------------Cc-ccCHHHHHHhCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--------------FS-VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g--------------~~-~~~l~e~~~~aDvvi~~~~~  174 (258)
                      .+|+|||+|.||..++..|...|.+|+++|+++...+.....+              .. ..++++.++++|+|++|+..
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            3799999999999999999999999999999987765444432              22 23567788899999999754


Q ss_pred             cc---cccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KN---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..   ++. +....++++.+++++..+
T Consensus        82 ~~~~~v~~-~l~~~~~~~~~vi~~~ng  107 (325)
T PRK00094         82 QALREVLK-QLKPLLPPDAPIVWATKG  107 (325)
T ss_pred             HHHHHHHH-HHHhhcCCCCEEEEEeec
Confidence            32   232 334456788899988655

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.25  E-value=3.7e-06  Score=74.50  Aligned_cols=103  Identities=20%  Similarity=0.197  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh--CCCEEE-EEeCChhhHHH-HHhCCC--cccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG--LGCVIY-ITEIDPICALQ-ACMDGF--SVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~--~G~~Vi-~~d~~~~~~~~-a~~~g~--~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      ...+|||||+|.||+.+++.+..  .++++. ++|+++.+... +.+.+.  .+.++++++.++|+|++|+.+... .+-
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~   83 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAI   83 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHH
Confidence            45799999999999999999986  477754 78998877543 334443  246799999999999999755432 223


Q ss_pred             HHhcCCCCcEEEecCCC---ChhhchhhhcCCC
Q psy16115        182 HMDKMKNGCVVCNMGHS---NTEIDVNSLRTPD  211 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~  211 (258)
                      ..+.++.|.-++..+.+   +.+.+.+..+.+.
T Consensus        84 ~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g  116 (271)
T PRK13302         84 VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNG  116 (271)
T ss_pred             HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcC
Confidence            34445666656655555   3344444444433

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.25  E-value=3.5e-06  Score=75.90  Aligned_cols=78  Identities=15%  Similarity=0.205  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHHHh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHMD  184 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~l~  184 (258)
                      .+.+|+|+|+|.+|..+|+.|...|.+|.++++++.            .++++.++++|+|+++....   .+++ +...
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~~~~advvi~~vp~~~~~~v~~-~l~~   69 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAVLADADVIVSAVSMKGVRPVAE-QVQA   69 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHHHhcCCEEEEECChHHHHHHHH-HHHH
Confidence            467899999999999999999999999999998753            35778888999999996443   2232 2212


Q ss_pred             -cCCCCcEEEecCCC
Q psy16115        185 -KMKNGCVVCNMGHS  198 (258)
Q Consensus       185 -~~k~g~~ivnvg~~  198 (258)
                       .++++.++++++.+
T Consensus        70 ~~~~~~~ivi~~s~g   84 (308)
T PRK14619         70 LNLPPETIIVTATKG   84 (308)
T ss_pred             hcCCCCcEEEEeCCc
Confidence             36788999998875

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=98.25  E-value=2.1e-06  Score=79.45  Aligned_cols=90  Identities=24%  Similarity=0.341  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhC-CCccc------CHHHHHH------hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMD-GFSVV------KLNEVIR------TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~-g~~~~------~l~e~~~------~aDvvi~~~~  173 (258)
                      .|.+|+|.|.|.+|..+++.++..|. +|++++.++.+.+.+++. +....      ++.+.+.      ..|+++.+++
T Consensus       184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg  263 (386)
T cd08283         184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVG  263 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCC
Confidence            78999999999999999999999998 599999998887776665 33221      1222222      4799999875


Q ss_pred             cc---------------------ccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NK---------------------NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~---------------------~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..                     ..++ +.++.+++++.++++|..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~iv~~g~~  308 (386)
T cd08283         264 MEAHGSPLHKAEQALLKLETDRPDALR-EAIQAVRKGGTVSIIGVY  308 (386)
T ss_pred             CcccccccccccccccccccCchHHHH-HHHHHhccCCEEEEEcCC
Confidence            32                     2454 788899999999999865

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=98.24  E-value=4e-06  Score=75.70  Aligned_cols=90  Identities=24%  Similarity=0.345  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-----CHHH----HH--HhCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-----KLNE----VI--RTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e----~~--~~aDvvi~~~~~~  175 (258)
                      .|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+...+.+.|+...     ++.+    ..  ++.|+++.+++..
T Consensus       167 ~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~  246 (344)
T cd08284         167 PGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGGA  246 (344)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCCH
Confidence            78999999999999999999999997 78888887777666666674211     2222    22  2479999998765


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+. +.++.+++++.++.+|..
T Consensus       247 ~~~~-~~~~~l~~~g~~v~~g~~  268 (344)
T cd08284         247 AALD-LAFDLVRPGGVISSVGVH  268 (344)
T ss_pred             HHHH-HHHHhcccCCEEEEECcC
Confidence            5664 788999999999999876

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.24  E-value=7.3e-06  Score=74.48  Aligned_cols=102  Identities=18%  Similarity=0.217  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-C-CEEEEEeCChhhHHHHH----hCCCc---ccCHHHHHHhCCeeeeccCcc-cc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-G-CVIYITEIDPICALQAC----MDGFS---VVKLNEVIRTVDIVVTATGNK-NV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G-~~Vi~~d~~~~~~~~a~----~~g~~---~~~l~e~~~~aDvvi~~~~~~-~~  177 (258)
                      ..++++|||+|.+|+..++.+... . -+|.++|+++++.+...    +.|..   ..+.+++++++|+|++|+.+. .+
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~  206 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPV  206 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcE
Confidence            358999999999999987777653 3 36999999998864322    23432   457899999999999997444 45


Q ss_pred             ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL  212 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i  212 (258)
                      +..   +++|+|+.+..+|..   ..|.+.+.+....+
T Consensus       207 ~~~---~~l~~g~~v~~vGs~~p~~~Eld~~~l~~a~v  241 (325)
T TIGR02371       207 VKA---DWVSEGTHINAIGADAPGKQELDPEILKNAKI  241 (325)
T ss_pred             ecH---HHcCCCCEEEecCCCCcccccCCHHHHhcCcE
Confidence            543   357999999999975   23444344443333

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.24  E-value=6e-06  Score=79.28  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-----------HhCCC-------------c-ccCHHHHHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIR  163 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-----------~~~g~-------------~-~~~l~e~~~  163 (258)
                      =++|+|||+|.||..+|+.+...|.+|+++|++++.++.+           .+.|.             . ..++++ +.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~   83 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LA   83 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hC
Confidence            3689999999999999999999999999999998876543           22231             1 224543 56


Q ss_pred             hCCeeeeccCccccccH----HHHhcCCCCcEEE-ecCCCChhhchhhhc
Q psy16115        164 TVDIVVTATGNKNVVTR----EHMDKMKNGCVVC-NMGHSNTEIDVNSLR  208 (258)
Q Consensus       164 ~aDvvi~~~~~~~~i~~----~~l~~~k~g~~iv-nvg~~~~~~~~~~l~  208 (258)
                      +||+||+|.....-+..    +.-+.+++++++. |++.-+.......+.
T Consensus        84 ~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~  133 (503)
T TIGR02279        84 DAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLA  133 (503)
T ss_pred             CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcC
Confidence            89999999543322222    3334567887775 777666554444443

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.22  E-value=1.6e-05  Score=71.67  Aligned_cols=65  Identities=18%  Similarity=0.255  Sum_probs=51.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-----------hCCC-------------c-ccCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF-------------S-VVKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-----------~~g~-------------~-~~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|+++...+.+.           +.|.             . ..++.+.+++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            4799999999999999999999999999999987654322           2332             1 2467778889


Q ss_pred             CCeeeeccCc
Q psy16115        165 VDIVVTATGN  174 (258)
Q Consensus       165 aDvvi~~~~~  174 (258)
                      +|+|++|...
T Consensus        83 ad~Vi~avpe   92 (308)
T PRK06129         83 ADYVQESAPE   92 (308)
T ss_pred             CCEEEECCcC
Confidence            9999999643

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=98.22  E-value=2.1e-06  Score=79.47  Aligned_cols=89  Identities=17%  Similarity=0.165  Sum_probs=69.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC---------------------------H
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK---------------------------L  158 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~---------------------------l  158 (258)
                      .|++|+|.|. |.+|..+++.++.+|+++++.+.++++...+++.|++. .+                           +
T Consensus       193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (393)
T cd08246         193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRF  272 (393)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchH
Confidence            6899999997 99999999999999999888888888887777777421 11                           1


Q ss_pred             HH----HHH---hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        159 NE----VIR---TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       159 ~e----~~~---~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+    +..   +.|+++.+++. ..+. +.++.++++++++.+|..
T Consensus       273 ~~~v~~l~~~~~g~d~vid~~g~-~~~~-~~~~~l~~~G~~v~~g~~  317 (393)
T cd08246         273 GKAIWDILGGREDPDIVFEHPGR-ATFP-TSVFVCDRGGMVVICAGT  317 (393)
T ss_pred             HHHHHHHhCCCCCCeEEEECCch-HhHH-HHHHHhccCCEEEEEccc
Confidence            11    111   57999999876 4454 688999999999998754

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.22  E-value=1e-05  Score=73.45  Aligned_cols=88  Identities=24%  Similarity=0.228  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHH-hCCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~-~~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      ..++++|||+|.+|+..+..+. ..+. +|.++++++++.+...+     .+..   +.++++++.++|+|++||...+.
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p  205 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP  205 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc
Confidence            5689999999999998887764 4576 59999999888654322     2433   34678899999999999876665


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +- .  +++|+|..++.+|..
T Consensus       206 ~i-~--~~l~~G~hV~~iGs~  223 (325)
T PRK08618        206 VF-S--EKLKKGVHINAVGSF  223 (325)
T ss_pred             ch-H--HhcCCCcEEEecCCC
Confidence            53 2  678999999999886

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.21  E-value=1.1e-05  Score=71.66  Aligned_cols=98  Identities=13%  Similarity=0.118  Sum_probs=68.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCC----CEEEEEeCChh-hHHHH-HhCCCc-ccCHHHHHHhCCeeeeccCccc---cc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPI-CALQA-CMDGFS-VVKLNEVIRTVDIVVTATGNKN---VV  178 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d~~~~-~~~~a-~~~g~~-~~~l~e~~~~aDvvi~~~~~~~---~i  178 (258)
                      +.+|+|||+|.||..+++.+...|    .+|+++|+++. +.... ...|+. ..+..++++++|+||+|.....   .+
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl   82 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEAL   82 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHH
Confidence            458999999999999999999887    57999998764 33332 334664 3467788889999999964333   23


Q ss_pred             cHHHHhcCCCCcEEEecCCC-Chhhchhhh
Q psy16115        179 TREHMDKMKNGCVVCNMGHS-NTEIDVNSL  207 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l  207 (258)
                      . +....++++.++|++..+ +.+.+.+.+
T Consensus        83 ~-~l~~~~~~~~liIs~~aGi~~~~l~~~~  111 (279)
T PRK07679         83 I-PFKEYIHNNQLIISLLAGVSTHSIRNLL  111 (279)
T ss_pred             H-HHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence            2 333456788899997555 544444433

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.20  E-value=1.1e-05  Score=75.03  Aligned_cols=87  Identities=20%  Similarity=0.192  Sum_probs=62.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----------------CCCcc---cCHHHHHHhCCeeeec
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----------------DGFSV---VKLNEVIRTVDIVVTA  171 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----------------~g~~~---~~l~e~~~~aDvvi~~  171 (258)
                      +|+|||+|.||..+|..+. .|.+|+++|+++.+.+...+                .+...   .+..+.++++|+|++|
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~   80 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA   80 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence            6999999999999997776 59999999999998765433                11111   2356677899999999


Q ss_pred             cCcc-----c-----cccH--HHHhcCCCCcEEEecCCC
Q psy16115        172 TGNK-----N-----VVTR--EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~~~~-----~-----~i~~--~~l~~~k~g~~ivnvg~~  198 (258)
                      ..++     .     .+..  +.+..+++|.++|+.|.-
T Consensus        81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv  119 (388)
T PRK15057         81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTV  119 (388)
T ss_pred             CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence            7655     1     1110  122336899999998875

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.19  E-value=1.1e-05  Score=73.10  Aligned_cols=102  Identities=20%  Similarity=0.248  Sum_probs=70.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHhC----C--Cc-ccCHHHHHHhCCeeeeccCcc-cc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACMD----G--FS-VVKLNEVIRTVDIVVTATGNK-NV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~~----g--~~-~~~l~e~~~~aDvvi~~~~~~-~~  177 (258)
                      ..++++|||+|.+|+.+++.+.. ++. +|.+++|++++.+...+.    +  +. ..++++.++++|+|++|+... .+
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~pv  203 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTEPL  203 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCCCE
Confidence            57999999999999999986654 564 799999998876543221    3  22 246788899999999887544 34


Q ss_pred             ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL  212 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i  212 (258)
                      +..   +++++|..+.-+|..   ..|...+.++...+
T Consensus       204 l~~---~~l~~g~~i~~ig~~~~~~~El~~~~~~~a~~  238 (314)
T PRK06141        204 VRG---EWLKPGTHLDLVGNFTPDMRECDDEAIRRASV  238 (314)
T ss_pred             ecH---HHcCCCCEEEeeCCCCcccccCCHHHHhcCcE
Confidence            543   467999976666654   23333344444433

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.19  E-value=1.3e-06  Score=68.68  Aligned_cols=102  Identities=19%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEE-EeCChhhHHHHHhC--CCcccCHHHHHHhCCeeeeccCccc--cccHHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEIDPICALQACMD--GFSVVKLNEVIRTVDIVVTATGNKN--VVTREH  182 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d~~~~~~~~a~~~--g~~~~~l~e~~~~aDvvi~~~~~~~--~i~~~~  182 (258)
                      ...+|+|||+|++|..+++.|+..|..|.. +.+++...+.+...  .....++++.+..+|++++++....  -+- +.
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va-~~   87 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVA-EQ   87 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHH-HH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHH-HH
Confidence            457999999999999999999999998766 46666555544332  2334577888899999999964332  222 23


Q ss_pred             Hhc---CCCCcEEEecCCC-ChhhchhhhcCC
Q psy16115        183 MDK---MKNGCVVCNMGHS-NTEIDVNSLRTP  210 (258)
Q Consensus       183 l~~---~k~g~~ivnvg~~-~~~~~~~~l~~~  210 (258)
                      +..   .++|.+++.++-. +.+++-..-+.|
T Consensus        88 La~~~~~~~g~iVvHtSGa~~~~vL~p~~~~G  119 (127)
T PF10727_consen   88 LAQYGAWRPGQIVVHTSGALGSDVLAPARERG  119 (127)
T ss_dssp             HHCC--S-TT-EEEES-SS--GGGGHHHHHTT
T ss_pred             HHHhccCCCCcEEEECCCCChHHhhhhHHHCC
Confidence            332   5789999998876 555554444444

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.18  E-value=6.2e-06  Score=77.58  Aligned_cols=89  Identities=11%  Similarity=0.141  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----------------ccCHHHHHHhCCeeee
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----------------VVKLNEVIRTVDIVVT  170 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----------------~~~l~e~~~~aDvvi~  170 (258)
                      ...+|+|||+|.||..+|..+.. |.+|++||+++.+.+... .|..                 ..+..+.++++|++|+
T Consensus         5 ~~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii   82 (425)
T PRK15182          5 DEVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII   82 (425)
T ss_pred             CCCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence            34689999999999999999876 789999999998876544 3332                 2233456788999999


Q ss_pred             ccCcc----------cccc--HHHHhcCCCCcEEEecCCC
Q psy16115        171 ATGNK----------NVVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       171 ~~~~~----------~~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      |.+|+          .+..  ....+.+++|.++|+.+.-
T Consensus        83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv  122 (425)
T PRK15182         83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTV  122 (425)
T ss_pred             EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            97665          1221  1344678999999998876

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=98.18  E-value=4.4e-06  Score=75.60  Aligned_cols=108  Identities=20%  Similarity=0.252  Sum_probs=76.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCcc-c-----CHHH----HHH--hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSV-V-----KLNE----VIR--TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e----~~~--~aDvvi~~~~~  174 (258)
                      +|.+++|.|.|.+|..+++.++.+| .+|++++.++.+...+.+.|++. .     ++.+    ...  ..|+++.|.+.
T Consensus       166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~  245 (345)
T cd08286         166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGI  245 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCC
Confidence            7899999999999999999999999 68888988887766666666532 1     1211    121  47999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeee
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEK  216 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~  216 (258)
                      ...+. ..++.++++++++++|..+  .......+..+.+++.+
T Consensus       246 ~~~~~-~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  288 (345)
T cd08286         246 PATFE-LCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITT  288 (345)
T ss_pred             HHHHH-HHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEe
Confidence            55554 6778899999999998542  22333333344455443

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>PLN02702 L-idonate 5-dehydrogenase

Probab=98.18  E-value=4e-06  Score=76.69  Aligned_cols=109  Identities=16%  Similarity=0.274  Sum_probs=78.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc--------CHHHHH--------HhCCeeee
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV--------KLNEVI--------RTVDIVVT  170 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~--------~l~e~~--------~~aDvvi~  170 (258)
                      .|++|+|.|.|.+|..+++.++.+|++ |++.++++.+.+.+.+.|++..        ++.+.+        ...|+++.
T Consensus       181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid  260 (364)
T PLN02702        181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFD  260 (364)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEE
Confidence            789999999999999999999999986 7888888877776666775421        222221        13799999


Q ss_pred             ccCccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeee
Q psy16115        171 ATGNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       171 ~~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~  217 (258)
                      +.+....+. +.++.++++++++.+|..  +.......+..+.+++.+.
T Consensus       261 ~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~  308 (364)
T PLN02702        261 CVGFNKTMS-TALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGV  308 (364)
T ss_pred             CCCCHHHHH-HHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEe
Confidence            988655664 889999999999999864  2222233344455565554

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.18  E-value=5.1e-06  Score=67.57  Aligned_cols=87  Identities=16%  Similarity=0.236  Sum_probs=62.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC--------Cc-------ccCHHHHHHhCCeeeeccCcc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--------FS-------VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g--------~~-------~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      +|+|+|.|..|.++|..+...|.+|++|.++++......+.+        ..       ..++++.++++|+|++++.+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            689999999999999999999999999999886554332211        11       236889999999999986433


Q ss_pred             ---ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 ---NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ---~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                         .++. +....++++..++++..|
T Consensus        81 ~~~~~~~-~l~~~l~~~~~ii~~~KG  105 (157)
T PF01210_consen   81 AHREVLE-QLAPYLKKGQIIISATKG  105 (157)
T ss_dssp             GHHHHHH-HHTTTSHTT-EEEETS-S
T ss_pred             HHHHHHH-HHhhccCCCCEEEEecCC
Confidence               2332 445556788899998776

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=98.17  E-value=3.5e-06  Score=77.56  Aligned_cols=90  Identities=23%  Similarity=0.197  Sum_probs=68.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-----CHHHHHH-----hCCeeeeccCccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-----KLNEVIR-----TVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~~-----~aDvvi~~~~~~~  176 (258)
                      +|++|+|.|.|.+|+.+++.++.+|+ +|++++.++.+.+.+.+.|+...     +..+.+.     ..|+++.|.+...
T Consensus       176 ~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~  255 (375)
T cd08282         176 PGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAIPIDFSDGDPVEQILGLEPGGVDRAVDCVGYEA  255 (375)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCeEeccCcccHHHHHHHhhCCCCCEEEECCCCcc
Confidence            78999999999999999999999998 79889998888877777775321     2222221     3799999976542


Q ss_pred             -----------cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 -----------VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 -----------~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                                 .++ +.++.+++++.++.+|..
T Consensus       256 ~~~~~~~~~~~~~~-~~~~~l~~~g~~~~~g~~  287 (375)
T cd08282         256 RDRGGEAQPNLVLN-QLIRVTRPGGGIGIVGVY  287 (375)
T ss_pred             cccccccchHHHHH-HHHHHhhcCcEEEEEecc
Confidence                       254 778889999999877653

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>PRK07680 late competence protein ComER; Validated

Probab=98.17  E-value=1.2e-05  Score=71.05  Aligned_cols=87  Identities=16%  Similarity=0.255  Sum_probs=64.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC----EEEEEeCChhhHHHHHh-C-CCcc-cCHHHHHHhCCeeeeccCccc---cccH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACM-D-GFSV-VKLNEVIRTVDIVVTATGNKN---VVTR  180 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~d~~~~~~~~a~~-~-g~~~-~~l~e~~~~aDvvi~~~~~~~---~i~~  180 (258)
                      +++|||+|.||..++..+...|.    +|+++++++.+...... . ++.. .+..+.+..+|+|++|+....   ++. 
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~-   80 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ-   80 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH-
Confidence            69999999999999999998883    69999999877654433 2 4543 467788899999999973222   221 


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      +....++++.++++++.+
T Consensus        81 ~l~~~l~~~~~iis~~ag   98 (273)
T PRK07680         81 KLAPHLTDEHCLVSITSP   98 (273)
T ss_pred             HHHhhcCCCCEEEEECCC
Confidence            333356778899999876

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.16  E-value=1.1e-05  Score=70.84  Aligned_cols=96  Identities=13%  Similarity=0.153  Sum_probs=67.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC---EEEEEeCChhhHHHHHh-C-CCcc-cCHHHHHHhCCeeeeccCccccccHHHHh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDPICALQACM-D-GFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~~~~~~~a~~-~-g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      +|+|||+|.||..+++.+...|.   .+.++++++++.....+ . +... .+..++++++|+|++|+.. ..+. +.++
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p-~~~~-~vl~   79 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRP-QIAE-EVLR   79 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCH-HHHH-HHHH
Confidence            69999999999999999998874   36789998877654333 3 3443 4678888999999999753 2222 3322


Q ss_pred             --cCCCCcEEEecCCC-Chhhchhhhc
Q psy16115        185 --KMKNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       185 --~~k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                        .++++.++|.+.-+ ..+.+-+.+.
T Consensus        80 ~l~~~~~~~vis~~ag~~~~~l~~~~~  106 (258)
T PRK06476         80 ALRFRPGQTVISVIAATDRAALLEWIG  106 (258)
T ss_pred             HhccCCCCEEEEECCCCCHHHHHHHhC
Confidence              24678888888766 4444444443

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.15  E-value=1.3e-05  Score=69.13  Aligned_cols=90  Identities=22%  Similarity=0.284  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH-----HhCCeeeeccCccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI-----RTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~-----~~aDvvi~~~~~~~  176 (258)
                      .|++|+|.|.|.+|+.+++.++..|.+|+++++++.+...+.+.|...      .+..+.+     ...|+++.+.+...
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~  213 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE  213 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            789999999999999999999999999999999887766665555431      1122211     34799999877644


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+. ..++.+++++.++++|..
T Consensus       214 ~~~-~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         214 TLA-QALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             HHH-HHHHhcccCCEEEEEccC
Confidence            554 678899999999999876

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.14  E-value=9.7e-06  Score=73.72  Aligned_cols=92  Identities=11%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec---cCccc-cccH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA---TGNKN-VVTR  180 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~---~~~~~-~i~~  180 (258)
                      ++.|++|+|||+|.||+.+++.|...|. +|++++|+..+..    .+-......+....+|+||.|   +++++ .+..
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~----~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~  246 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP----YRTVVREELSFQDPYDVIFFGSSESAYAFPHLSW  246 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc----hhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence            4799999999999999999999999996 6999999874311    110000111334578999997   44443 5555


Q ss_pred             HHHhcCCCCcEEEecCCC-Chhh
Q psy16115        181 EHMDKMKNGCVVCNMGHS-NTEI  202 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~-~~~~  202 (258)
                      +.++..++ -+++|.+.+ |.+.
T Consensus       247 ~~~~~~~~-r~~iDLAvPRdId~  268 (338)
T PRK00676        247 ESLADIPD-RIVFDFNVPRTFPW  268 (338)
T ss_pred             HHHhhccC-cEEEEecCCCCCcc
Confidence            66654332 389999998 6653

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.14  E-value=1.6e-05  Score=69.83  Aligned_cols=96  Identities=18%  Similarity=0.193  Sum_probs=66.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC---CEEEEEeCChhhHHHHHh-CCCcc-cCHHHHHHhCCeeeeccCccccccHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG---CVIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G---~~Vi~~d~~~~~~~~a~~-~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      .+++|||+|.||..++..+...|   .+|.++|+++++.+...+ .|... .+..+.+.++|+|++|+.... +. +.++
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~-~~-~v~~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQV-ME-EVLS   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHH-HH-HHHH
Confidence            47999999999999999999888   579999999877655444 35543 466777889999999974333 22 3343


Q ss_pred             cCCC--CcEEEecCCC-Chhhchhhh
Q psy16115        185 KMKN--GCVVCNMGHS-NTEIDVNSL  207 (258)
Q Consensus       185 ~~k~--g~~ivnvg~~-~~~~~~~~l  207 (258)
                      .+++  +..++.+..+ ..+.+...+
T Consensus        81 ~l~~~~~~~vvs~~~gi~~~~l~~~~  106 (267)
T PRK11880         81 ELKGQLDKLVVSIAAGVTLARLERLL  106 (267)
T ss_pred             HHHhhcCCEEEEecCCCCHHHHHHhc
Confidence            3332  3566666656 444333333

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.13  E-value=2.2e-05  Score=70.67  Aligned_cols=98  Identities=14%  Similarity=0.139  Sum_probs=64.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----CC--------------Cc-ccCHHHHHHhCCeee
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DG--------------FS-VVKLNEVIRTVDIVV  169 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----~g--------------~~-~~~l~e~~~~aDvvi  169 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|+++++.+.+.+     .+              .. ..+.++.++++|+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            68999999999999999999999999999998877554332     11              11 235667788999999


Q ss_pred             eccCccc----cccHHHHhcCCCCcEEE-ecCCCChhhchhhh
Q psy16115        170 TATGNKN----VVTREHMDKMKNGCVVC-NMGHSNTEIDVNSL  207 (258)
Q Consensus       170 ~~~~~~~----~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l  207 (258)
                      +|.....    .+-.+.-..++++++++ +++......+.+.+
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~  127 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAV  127 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhc
Confidence            9964332    12123223456676664 44322444333333

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=98.13  E-value=3e-06  Score=76.14  Aligned_cols=108  Identities=18%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             CCCEEEEE--cCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH----H--hCCeeeeccC
Q psy16115        108 GGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI----R--TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~Ii--G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~--~aDvvi~~~~  173 (258)
                      .+.+++|+  |.|.+|..+++.++.+|++|++.+.++++...+++.|++..      ++.+.+    .  ..|+++.+++
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g  221 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG  221 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC
Confidence            56667775  88999999999999999999999999888877777776421      222222    1  4799999988


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC--C-hh-hchhhhcCCCceeeee
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS--N-TE-IDVNSLRTPDLTWEKV  217 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~--~-~~-~~~~~l~~~~i~~~~~  217 (258)
                      .....  +.++.++++++++.+|..  . .. .....+..+++++.+.
T Consensus       222 ~~~~~--~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  267 (324)
T cd08291         222 GGLTG--QILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGF  267 (324)
T ss_pred             cHHHH--HHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEE
Confidence            65542  568889999999998854  2 11 2223333455665554

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.10  E-value=1.6e-05  Score=70.70  Aligned_cols=106  Identities=19%  Similarity=0.236  Sum_probs=71.4

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHh-CCC----cc-cCHHHHHHhCCeeeeccCcc-
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACM-DGF----SV-VKLNEVIRTVDIVVTATGNK-  175 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~-~g~----~~-~~l~e~~~~aDvvi~~~~~~-  175 (258)
                      +..+.+++++|+|+|.+|+.++..|...| .+|++++|+.++.+...+ .+.    .. .+..+.+.++|+||.|+... 
T Consensus       118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~  197 (278)
T PRK00258        118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM  197 (278)
T ss_pred             CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence            34578999999999999999999999999 589999999887654322 111    11 12345667899999986322 


Q ss_pred             -c--cccHHHHhcCCCCcEEEecCCC-ChhhchhhhcC
Q psy16115        176 -N--VVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRT  209 (258)
Q Consensus       176 -~--~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~  209 (258)
                       .  ....-..+.++++..++|+--. ....+++.-+.
T Consensus       198 ~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~  235 (278)
T PRK00258        198 SGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKA  235 (278)
T ss_pred             CCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHH
Confidence             1  0111123567889999999765 23444444443

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.10  E-value=1.1e-05  Score=72.97  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=79.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC-----H-HHHHHhCCeeeeccCccccccH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK-----L-NEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~-----l-~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      .|.+++|.|.|.+|+.+++.++.+|++|+++++++++...+.+.|++. .+     . ...-...|+++.|.+....+ .
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~-~  247 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDL-D  247 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcchH-H
Confidence            689999999999999999999999999999998887776666666542 11     1 11123579999998776445 4


Q ss_pred             HHHhcCCCCcEEEecCCCChh--hchhhhcCCCceeeee
Q psy16115        181 EHMDKMKNGCVVCNMGHSNTE--IDVNSLRTPDLTWEKV  217 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~~~~--~~~~~l~~~~i~~~~~  217 (258)
                      +.++.+++++.++++|..+..  .....+..+.+++.+.
T Consensus       248 ~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~  286 (337)
T cd05283         248 PYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGS  286 (337)
T ss_pred             HHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEe
Confidence            788999999999999876222  2333333455665554

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=98.09  E-value=1.8e-06  Score=65.31  Aligned_cols=87  Identities=16%  Similarity=0.190  Sum_probs=60.4

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      +++|++|+|||.|++|..-++.|...|++|+++.+...    ..+..++  ...+++.+.++|+|+.|++.+. ++.+..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~----~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-~n~~i~   78 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIE----FSEGLIQLIRREFEEDLDGADLVFAATDDPE-LNEAIY   78 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEH----HHHTSCEEEESS-GGGCTTESEEEE-SS-HH-HHHHHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchh----hhhhHHHHHhhhHHHHHhhheEEEecCCCHH-HHHHHH
Confidence            46899999999999999999999999999999987751    1112221  2234455778999999886655 444666


Q ss_pred             hcCCCCcEEEecCC
Q psy16115        184 DKMKNGCVVCNMGH  197 (258)
Q Consensus       184 ~~~k~g~~ivnvg~  197 (258)
                      +..+.-.+++|+.-
T Consensus        79 ~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   79 ADARARGILVNVVD   92 (103)
T ss_dssp             HHHHHTTSEEEETT
T ss_pred             HHHhhCCEEEEECC
Confidence            66676778888763

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.08  E-value=2.3e-05  Score=65.59  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=56.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---------------------c-cCHHHHHHhCCe
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---------------------V-VKLNEVIRTVDI  167 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---------------------~-~~l~e~~~~aDv  167 (258)
                      .+|+|||+|.+|..+|..+...|.+|+++|.++++..... .|..                     . .+.++.++.+|+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~-~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN-NGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV   79 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH-TTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh-hccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence            3799999999999999999999999999999998765432 2211                     1 235566778999


Q ss_pred             eeeccCcccc---------cc---HHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKNV---------VT---REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~~---------i~---~~~l~~~k~g~~ivnvg~~  198 (258)
                      +++|.+|+.-         +.   .+..+.++++.++|.-+.-
T Consensus        80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv  122 (185)
T PF03721_consen   80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV  122 (185)
T ss_dssp             EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred             EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence            9999654421         11   1334567889999988765

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=98.07  E-value=8.1e-06  Score=73.88  Aligned_cols=90  Identities=20%  Similarity=0.241  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c------CHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V------KLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~------~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|++|+|.|.|.+|+.+++.++..|++|++.+.++++...+.+.|++. .      ++.+.+.     ..|+++.+.+..
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~  244 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIP  244 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCCH
Confidence            689999999999999999999999999999988887776666666531 1      1222121     489999998755


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+. ..++.+++++.++.+|..
T Consensus       245 ~~~~-~~~~~l~~~g~~i~~g~~  266 (345)
T cd08260         245 ETCR-NSVASLRKRGRHVQVGLT  266 (345)
T ss_pred             HHHH-HHHHHhhcCCEEEEeCCc
Confidence            5554 678899999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=98.06  E-value=8.6e-06  Score=73.45  Aligned_cols=90  Identities=22%  Similarity=0.318  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-cC-----HHHHHH---hCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-VK-----LNEVIR---TVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~~-----l~e~~~---~aDvvi~~~~~~~~  177 (258)
                      +|++|+|.|.|.+|+.+++.++..|. +|++++.++.+...+.+.|.+. .+     +.+...   +.|+++.+.+....
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~vd~vld~~g~~~~  244 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADKGDFDVVFEASGAPAA  244 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCchhhhhhhccCCCccEEEECCCCHHH
Confidence            78999999999999999999999999 7999988877665555566421 11     222222   27999998765445


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +. +.++.++++++++++|..
T Consensus       245 ~~-~~~~~L~~~G~~v~~g~~  264 (339)
T cd08232         245 LA-SALRVVRPGGTVVQVGML  264 (339)
T ss_pred             HH-HHHHHHhcCCEEEEEecC
Confidence            54 778899999999998754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=98.06  E-value=3.5e-06  Score=76.31  Aligned_cols=90  Identities=23%  Similarity=0.339  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc------cCH---H----HHHH--hCCeeeec
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV------VKL---N----EVIR--TVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~------~~l---~----e~~~--~aDvvi~~  171 (258)
                      +|++|+|.|.|.+|..+++.++.+|++ |++++.++++.....+.|.+.      .+.   .    +...  +.|+++.|
T Consensus       162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~  241 (343)
T cd05285         162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIEC  241 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEEC
Confidence            789999999999999999999999997 888888777766555556532      111   1    1222  27999999


Q ss_pred             cCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        172 TGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+....+. +.++.++++++++.+|..
T Consensus       242 ~g~~~~~~-~~~~~l~~~G~~v~~g~~  267 (343)
T cd05285         242 TGAESCIQ-TAIYATRPGGTVVLVGMG  267 (343)
T ss_pred             CCCHHHHH-HHHHHhhcCCEEEEEccC
Confidence            87654554 778899999999998865

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=98.03  E-value=3.6e-05  Score=70.29  Aligned_cols=108  Identities=18%  Similarity=0.205  Sum_probs=78.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcc-c------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-V------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~-~------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|.|. |.+|+.+++.++.+|++|++++.++.+.+.++ +.|++. .      ++.+.+.     +.|+++.+.+
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG  237 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG  237 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECCC
Confidence            7999999999 99999999999999999999988888776665 577642 1      2333332     3799999987


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCCC-hh-------hchhhhcCCCceeeee
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHSN-TE-------IDVNSLRTPDLTWEKV  217 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~~-~~-------~~~~~l~~~~i~~~~~  217 (258)
                      .. .+. +.++.++++++++.+|... ..       .....+..+++++.+.
T Consensus       238 ~~-~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~  287 (348)
T PLN03154        238 GD-MLD-AALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGF  287 (348)
T ss_pred             HH-HHH-HHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEE
Confidence            64 454 7899999999999998641 11       1223344556666654

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=98.03  E-value=2.7e-05  Score=71.82  Aligned_cols=90  Identities=21%  Similarity=0.257  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-----C--HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-----K--LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-----~--l~e~~~-----~aDvvi~~~~  173 (258)
                      .|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+.+.|++. .     +  ..+.+.     ..|+++.+++
T Consensus       190 ~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g  269 (373)
T cd08299         190 PGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIG  269 (373)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEECCC
Confidence            68999999999999999999999999 7999999998888887777631 1     1  222222     4799999988


Q ss_pred             ccccccHHHHhcC-CCCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKM-KNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~-k~g~~ivnvg~~  198 (258)
                      ....+. +.+..+ +++++++.+|..
T Consensus       270 ~~~~~~-~~~~~~~~~~G~~v~~g~~  294 (373)
T cd08299         270 RLDTMK-AALASCHEGYGVSVIVGVP  294 (373)
T ss_pred             CcHHHH-HHHHhhccCCCEEEEEccC
Confidence            766665 555544 578999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=98.03  E-value=1.8e-05  Score=68.39  Aligned_cols=105  Identities=20%  Similarity=0.325  Sum_probs=69.8

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeC----------ChhhHHHHHh-CC-------CcccCHHHHHH-h
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACM-DG-------FSVVKLNEVIR-T  164 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~----------~~~~~~~a~~-~g-------~~~~~l~e~~~-~  164 (258)
                      .++.|++|+|.|+|.+|+.+++.|..+|++|+ +.|.          +...+...++ .|       ....+.++++. +
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            45799999999999999999999999999988 6776          5555443322 22       11223333332 6


Q ss_pred             CCeeeeccCccccccHHHHhcCCCCcEEEecCCC-Ch-hhchhhhcCCCc
Q psy16115        165 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS-NT-EIDVNSLRTPDL  212 (258)
Q Consensus       165 aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~-~~-~~~~~~l~~~~i  212 (258)
                      +|+++.|+ ..+.++.+....++  +.+|--|-. .. +..-+.|..+.+
T Consensus       107 ~Dvlip~a-~~~~i~~~~~~~l~--a~~I~egAN~~~t~~a~~~L~~rGi  153 (227)
T cd01076         107 CDILIPAA-LENQITADNADRIK--AKIIVEAANGPTTPEADEILHERGV  153 (227)
T ss_pred             ccEEEecC-ccCccCHHHHhhce--eeEEEeCCCCCCCHHHHHHHHHCCC
Confidence            89999998 67788888888887  444433333 21 122245555555

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.02  E-value=3.8e-05  Score=69.81  Aligned_cols=88  Identities=20%  Similarity=0.201  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHH-hCCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCcc-c
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNK-N  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~-~~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~-~  176 (258)
                      ..++++|||+|.+|+..++.+. ..+. +|.+++|++.+.+...+     .+..   ..++++.+.++|+|+.||... .
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p  207 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP  207 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc
Confidence            4679999999999999999997 4675 69999999887654221     2443   246788899999999997544 4


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++..+   ++|+|..+..+|..
T Consensus       208 ~i~~~---~l~~g~~i~~vg~~  226 (326)
T TIGR02992       208 ILHAE---WLEPGQHVTAMGSD  226 (326)
T ss_pred             EecHH---HcCCCcEEEeeCCC
Confidence            55533   47999999888865

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>KOG2380|consensus

Probab=98.00  E-value=4.2e-05  Score=68.84  Aligned_cols=135  Identities=12%  Similarity=0.092  Sum_probs=88.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHH-hCCeeeeccCcc---ccccHHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIR-TVDIVVTATGNK---NVVTREH  182 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~-~aDvvi~~~~~~---~~i~~~~  182 (258)
                      +-.+|+|||+|.+|+..|..+...|..++.+||+.... .+...|.. +..+.++++ ..|+|+.|+...   .++..--
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyss-aa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatyp  129 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSS-AAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYP  129 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHH-HHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcC
Confidence            56899999999999999999999999999999988543 45556654 456777776 589999997433   2332223


Q ss_pred             HhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        183 MDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      ++.+|.|++++++-.-  .+..++..---++.++...++.-.+-.-..+|=+-..||.=++.+
T Consensus       130 fqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig  192 (480)
T KOG2380|consen  130 FQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIG  192 (480)
T ss_pred             chhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeecc
Confidence            5668999999988765  222233322334566665554322112222333335677666655

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.00  E-value=1.6e-05  Score=67.75  Aligned_cols=87  Identities=24%  Similarity=0.243  Sum_probs=61.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhC--CCE-EEEEeCChhhHHHHHhC-C-CcccCHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL--GCV-IYITEIDPICALQACMD-G-FSVVKLNEVIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~--G~~-Vi~~d~~~~~~~~a~~~-g-~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      +|++||+|.||..+.+.++.-  ..+ +.+||++.++...+.+. + ....++++++.+.|++++|.+...+-+ -..+.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e-~~~~~   80 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVRE-YVPKI   80 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHH-HhHHH
Confidence            799999999999999999854  455 88899999886543332 2 234679999999999999975554332 34455


Q ss_pred             CCCCcEEEecCCC
Q psy16115        186 MKNGCVVCNMGHS  198 (258)
Q Consensus       186 ~k~g~~ivnvg~~  198 (258)
                      ++.|.-++-++.|
T Consensus        81 L~~g~d~iV~SVG   93 (255)
T COG1712          81 LKAGIDVIVMSVG   93 (255)
T ss_pred             HhcCCCEEEEech
Confidence            5655444444444

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.99  E-value=2.9e-05  Score=65.72  Aligned_cols=88  Identities=18%  Similarity=0.181  Sum_probs=62.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHH-HhCC--CcccCHHHHHHhCCeeeeccCccccc--cHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQA-CMDG--FSVVKLNEVIRTVDIVVTATGNKNVV--TREHM  183 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a-~~~g--~~~~~l~e~~~~aDvvi~~~~~~~~i--~~~~l  183 (258)
                      ++++|+|.|.||..+++++...|.+|++-.++..+ ...+ ...+  ++..+.++..+.+|+|+++..-....  .++..
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~   81 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR   81 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence            57999999999999999999999998887555444 3322 2222  34457889999999999996433322  12444


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                      +.++ |.++||+..+
T Consensus        82 ~~~~-~KIvID~tnp   95 (211)
T COG2085          82 DALG-GKIVIDATNP   95 (211)
T ss_pred             HHhC-CeEEEecCCC
Confidence            4455 7899998775

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.98  E-value=3.2e-05  Score=69.99  Aligned_cols=100  Identities=17%  Similarity=0.300  Sum_probs=72.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-CC-EEEEEeCChhhHHHHH----hCCCcc---cCHHHHHHhCCeeeeccCcc-cc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-GC-VIYITEIDPICALQAC----MDGFSV---VKLNEVIRTVDIVVTATGNK-NV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~-~Vi~~d~~~~~~~~a~----~~g~~~---~~l~e~~~~aDvvi~~~~~~-~~  177 (258)
                      .-++++|||+|..|+..++.+... .. +|.+|++++++.+...    +.+...   .+.++.+++||+|++||.+. .+
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P~  206 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREPL  206 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCce
Confidence            458999999999999998888754 33 6999999998865322    123332   36889999999999987544 45


Q ss_pred             ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP  210 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~  210 (258)
                      ++.   +++|+|+.+..+|..   ..|.+.+.+...
T Consensus       207 ~~~---~~l~~G~hi~~iGs~~p~~~Eld~~~l~~a  239 (315)
T PRK06823        207 LQA---EDIQPGTHITAVGADSPGKQELDAELVARA  239 (315)
T ss_pred             eCH---HHcCCCcEEEecCCCCcccccCCHHHHhhC
Confidence            553   467999999999976   344444444433

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=97.97  E-value=2.6e-05  Score=72.04  Aligned_cols=90  Identities=21%  Similarity=0.213  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c--------CHHHHH------HhCCeeeec
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V--------KLNEVI------RTVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~--------~l~e~~------~~aDvvi~~  171 (258)
                      .|.+|+|.|.|.+|+.+++.++..|+ +|++.+.++.+...+.+.|++. .        +..+.+      +..|+++.+
T Consensus       203 ~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~  282 (384)
T cd08265         203 PGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEA  282 (384)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEEC
Confidence            78999999999999999999999999 7999988888777677777632 1        111211      147999999


Q ss_pred             cCcc-ccccHHHHhcCCCCcEEEecCCC
Q psy16115        172 TGNK-NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~~~~-~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.. ..+. +.++.++++++++++|..
T Consensus       283 ~g~~~~~~~-~~~~~l~~~G~~v~~g~~  309 (384)
T cd08265         283 AGAPPATIP-QMEKSIAINGKIVYIGRA  309 (384)
T ss_pred             CCCcHHHHH-HHHHHHHcCCEEEEECCC
Confidence            7753 3443 778889999999999865

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PRK06046 alanine dehydrogenase; Validated

Probab=97.96  E-value=6e-05  Score=68.54  Aligned_cols=101  Identities=21%  Similarity=0.264  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCcc-c
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNK-N  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~-~  176 (258)
                      .-++++|||+|.+|+..++.+.. .+. +|.++|+++.+.....+     .+..   +.+++++++ +|+|++||.+. .
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~P  206 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRKP  206 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCCc
Confidence            35899999999999999998874 456 48889999877654322     1332   346788887 99999997544 4


Q ss_pred             cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL  212 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i  212 (258)
                      +++.   +++|+|+.+..+|..   ..|.+.+.+....+
T Consensus       207 ~~~~---~~l~~g~hV~~iGs~~p~~~El~~~~~~~a~v  242 (326)
T PRK06046        207 VVKA---EWIKEGTHINAIGADAPGKQELDPEILLRAKV  242 (326)
T ss_pred             EecH---HHcCCCCEEEecCCCCCccccCCHHHHhCCcE
Confidence            5553   357999999999975   24444444444444

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=97.96  E-value=5e-05  Score=69.68  Aligned_cols=90  Identities=24%  Similarity=0.297  Sum_probs=72.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHH-----HhCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVI-----RTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~-----~~aDvvi~~~~~~  175 (258)
                      .|++|+|.|.|.+|..+++.++..|+ +|++++.++.+...+.+.|++..      ++.+.+     .+.|+++.+.+..
T Consensus       186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~  265 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVP  265 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCc
Confidence            68999999999999999999999999 58999999888777667665321      222222     2479999998876


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+. +.++.+++++.++.+|..
T Consensus       266 ~~~~-~~~~~l~~~G~~v~~g~~  287 (365)
T cd08278         266 AVIE-QAVDALAPRGTLALVGAP  287 (365)
T ss_pred             HHHH-HHHHHhccCCEEEEeCcC
Confidence            6665 789999999999999865

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.95  E-value=2.9e-05  Score=70.22  Aligned_cols=87  Identities=22%  Similarity=0.237  Sum_probs=55.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHH---h-CCCc---ccCHHHHHHhCCeeeeccCccc---
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQAC---M-DGFS---VVKLNEVIRTVDIVVTATGNKN---  176 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~---~-~g~~---~~~l~e~~~~aDvvi~~~~~~~---  176 (258)
                      .++++|||+|..|+..++.+.. ++. +|.+|++++.+.+...   . .+..   ..+.++++++||+|++||....   
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~P  207 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPAP  207 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCCc
Confidence            4799999999999999988865 565 6999999998754321   1 2433   3478999999999999975444   


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +++.   +++++|..|..+|..
T Consensus       208 ~~~~---~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  208 VFDA---EWLKPGTHINAIGSY  226 (313)
T ss_dssp             SB-G---GGS-TT-EEEE-S-S
T ss_pred             cccH---HHcCCCcEEEEecCC
Confidence            5653   378999999999987

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.94  E-value=5.4e-05  Score=68.12  Aligned_cols=100  Identities=14%  Similarity=0.137  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-CC-EEEEEeCChhhHHHHH-h----CCCc---ccCHHHHHHhCCeeeeccCcc-c
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-GC-VIYITEIDPICALQAC-M----DGFS---VVKLNEVIRTVDIVVTATGNK-N  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~-~Vi~~d~~~~~~~~a~-~----~g~~---~~~l~e~~~~aDvvi~~~~~~-~  176 (258)
                      .-++++|||+|..|+..++.+... .. +|.+|++++.+.+... +    .+..   ..+.++++.+||+|++||... .
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P  195 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTP  195 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCc
Confidence            458999999999999888888754 54 6999999998855321 1    2433   247999999999999987544 4


Q ss_pred             cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP  210 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~  210 (258)
                      +++.+   ++|||..+.-+|..   ..|.+.+.+...
T Consensus       196 ~~~~~---~l~pg~hV~aiGs~~p~~~El~~~~l~~a  229 (301)
T PRK06407        196 IFNRK---YLGDEYHVNLAGSNYPNRREAEHSVLNDA  229 (301)
T ss_pred             EecHH---HcCCCceEEecCCCCCCcccCCHHHHHhC
Confidence            55533   67999999888876   234443444433

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.93  E-value=2.2e-05  Score=66.82  Aligned_cols=91  Identities=15%  Similarity=0.205  Sum_probs=65.0

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-HHHHhCC-Cccc--C-HHHHHHhCCeeeeccCccccccH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDG-FSVV--K-LNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-~~a~~~g-~~~~--~-l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      ++.|++|+|+|.|.+|..-++.|..+|++|++++++.... ....+.+ +...  + ..+.+.++|+|+.|++.+. ++.
T Consensus         6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~-ln~   84 (205)
T TIGR01470         6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE-LNR   84 (205)
T ss_pred             EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH-HHH
Confidence            4789999999999999999999999999999998765432 2222222 2211  1 1345678999999987654 444


Q ss_pred             HHHhcCCCCcEEEecCC
Q psy16115        181 EHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~  197 (258)
                      ......+...+++|+.-
T Consensus        85 ~i~~~a~~~~ilvn~~d  101 (205)
T TIGR01470        85 RVAHAARARGVPVNVVD  101 (205)
T ss_pred             HHHHHHHHcCCEEEECC
Confidence            66666666678888653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.93  E-value=4.5e-05  Score=65.69  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=78.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHh---CCeeeec---c-CccccccHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRT---VDIVVTA---T-GNKNVVTREH  182 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~---aDvvi~~---~-~~~~~i~~~~  182 (258)
                      +++.||+|+||..++++++..|..|++||+++...+.+...|++ ..+++++++.   .-+|-+.   . -+..+++ +.
T Consensus         2 ~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~l   80 (300)
T COG1023           2 QIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-DL   80 (300)
T ss_pred             cceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-HH
Confidence            68999999999999999999999999999999988888888875 3467888764   2343332   2 3455664 66


Q ss_pred             HhcCCCCcEEEecCCCChhhc---hhhhcCCCceeee
Q psy16115        183 MDKMKNGCVVCNMGHSNTEID---VNSLRTPDLTWEK  216 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~~~---~~~l~~~~i~~~~  216 (258)
                      -..|.+|-++||-|...-.+.   .+.+..+.|....
T Consensus        81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD  117 (300)
T COG1023          81 APLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLD  117 (300)
T ss_pred             HhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEe
Confidence            667899999999988743333   3456666665543

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=97.92  E-value=6.1e-05  Score=67.69  Aligned_cols=89  Identities=22%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-------CHHHHHH-----hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-------KLNEVIR-----TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-------~l~e~~~-----~aDvvi~~~~~  174 (258)
                      +|++|+|.| .|.+|+.+++.++..|++|++.++++++.+.+.+.|++..       ++.+.++     +.|+++.+.+.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~  217 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG  217 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence            789999999 5999999999999999999999988888777777776421       2333332     37999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .. + .+.++.++++++++.+|..
T Consensus       218 ~~-~-~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       218 EF-S-NTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             HH-H-HHHHHHhCcCcEEEEecch
Confidence            53 4 4789999999999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3

Probab=97.92  E-value=1.4e-05  Score=69.91  Aligned_cols=71  Identities=44%  Similarity=0.766  Sum_probs=52.1

Q ss_pred             Ccchh------hHHHHHHHHHhCC-CCCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcc
Q psy16115         25 NPLII------PQALALIELFNAP-AGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPS   95 (258)
Q Consensus        25 ~~~~~------~~~l~~~~l~~~~-~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   95 (258)
                      ||.++      +|+|++.+++..+ +.++..+|+++|..+|++||++.+..+++.++.+++.+.+|+..+..||+.+.
T Consensus       188 HP~eVMd~SFa~QaLa~~~L~~~~~~~~~~~~V~~lP~~lDe~VA~~kL~~lGi~id~Lt~eQ~~YL~~~~~GP~k~~  265 (268)
T PF05221_consen  188 HPSEVMDMSFANQALAQIYLWKNPNSGKLEPGVYPLPKELDEEVARLKLKSLGIKIDKLTEEQAEYLGSWQEGPFKPD  265 (268)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHTGTTGGSTSSEEE--HHHHHHHHHHHHGGGT-------HHHHHHHTS-TTS-SS-T
T ss_pred             CchhhhhhHhHHHHHHHHHHHhCcCccccCCCEEECCccchHHHHHHHHHHcCCccccCCHHHHHHcCCCCCCCCCcc
Confidence            78874      9999999999983 14689999999999999999999999999999999999999999999998764

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.91  E-value=7.7e-05  Score=67.04  Aligned_cols=107  Identities=19%  Similarity=0.274  Sum_probs=69.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-cc-------------cCHHHHHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-SV-------------VKLNEVIR  163 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-~~-------------~~l~e~~~  163 (258)
                      -++|+|||.|.||..+|..+...|..|+.+|++++.+..+..           .|. ..             .++. .++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~   81 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK   81 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence            479999999999999999999977999999999665443221           111 00             1111 567


Q ss_pred             hCCeeeeccCccccccH----HHHhcCCCCcEE-EecCCCChhhchhhhcCCCceeeee
Q psy16115        164 TVDIVVTATGNKNVVTR----EHMDKMKNGCVV-CNMGHSNTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       164 ~aDvvi~~~~~~~~i~~----~~l~~~k~g~~i-vnvg~~~~~~~~~~l~~~~i~~~~~  217 (258)
                      +||+|+++.--.--+..    +.-+..++++++ .|+|.-+.....+..+..+ +..+.
T Consensus        82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rpe-r~iG~  139 (307)
T COG1250          82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPE-RFIGL  139 (307)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCch-hEEEE
Confidence            89999998522222222    344456889888 5666556666666664443 34444

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=97.91  E-value=1.5e-05  Score=69.80  Aligned_cols=90  Identities=22%  Similarity=0.242  Sum_probs=70.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCC-Ccc-cCHH-HHH--HhCCeeeeccCccccccHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDG-FSV-VKLN-EVI--RTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g-~~~-~~l~-e~~--~~aDvvi~~~~~~~~i~~~  181 (258)
                      +|++++|.|.|.+|+.+++.++..|++ |+++++++++...+.+.| .+. .... ...  ...|+++.+.+....+. +
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~-~  175 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPSALE-T  175 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChHHHH-H
Confidence            789999999999999999999999998 999998888877777777 221 1111 111  24799999876655554 7


Q ss_pred             HHhcCCCCcEEEecCCC
Q psy16115        182 HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~  198 (258)
                      .++.+++++.++++|..
T Consensus       176 ~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         176 ALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             HHHHhcCCcEEEEEecc
Confidence            78899999999999875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=97.91  E-value=7.2e-06  Score=73.98  Aligned_cols=90  Identities=17%  Similarity=0.261  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-cC-----HH-H------HH--HhCCeeeec
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-VK-----LN-E------VI--RTVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~~-----l~-e------~~--~~aDvvi~~  171 (258)
                      .|.+|+|.|.|.+|..+++.++..|++ +++.+.++.+...+.+.|.+. .+     .. +      ..  ...|+++.+
T Consensus       161 ~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vid~  240 (341)
T cd08262         161 PGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFEC  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEEEC
Confidence            789999999999999999999999996 777887787776666666531 11     10 1      11  137999999


Q ss_pred             cCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        172 TGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+....+. +.++.++++++++++|..
T Consensus       241 ~g~~~~~~-~~~~~l~~~g~~v~~g~~  266 (341)
T cd08262         241 VGAPGLIQ-QIIEGAPPGGRIVVVGVC  266 (341)
T ss_pred             CCCHHHHH-HHHHHhccCCEEEEECCC
Confidence            87644554 678889999999999865

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.89  E-value=6.1e-05  Score=64.64  Aligned_cols=82  Identities=24%  Similarity=0.265  Sum_probs=57.7

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCCh----------hhHHHHHhCC-Cc------ccCHHHHH-HhC
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDP----------ICALQACMDG-FS------VVKLNEVI-RTV  165 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~----------~~~~~a~~~g-~~------~~~l~e~~-~~a  165 (258)
                      .++.|++|+|.|+|.+|+.+|+.|...|++ |.+.|.+.          .......+.+ ..      ..+.++++ ..+
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            357999999999999999999999999996 66688877          4443333222 11      11223332 268


Q ss_pred             CeeeeccCccccccHHHHhcCC
Q psy16115        166 DIVVTATGNKNVVTREHMDKMK  187 (258)
Q Consensus       166 Dvvi~~~~~~~~i~~~~l~~~k  187 (258)
                      |+++.|+. .+.++.+....++
T Consensus        99 DVlipaA~-~~~i~~~~a~~l~  119 (217)
T cd05211          99 DIFAPCAL-GNVIDLENAKKLK  119 (217)
T ss_pred             cEEeeccc-cCccChhhHhhcC
Confidence            99999974 4477777777776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.88  E-value=5.4e-05  Score=64.83  Aligned_cols=87  Identities=24%  Similarity=0.267  Sum_probs=60.7

Q ss_pred             EEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh--------CCC----cccCHHHHHHhCCeeeeccCcccc
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--------DGF----SVVKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~--------~g~----~~~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      +|+||| .|.||..++..|...|.+|+++++++++......        .|.    ...+..+.++++|+|++|......
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~~   81 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDHV   81 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHHH
Confidence            699997 8999999999999999999999999877543222        122    123567788899999999644432


Q ss_pred             cc--HHHHhcCCCCcEEEecCCC
Q psy16115        178 VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      -.  ++.-..++ +.+++++.-+
T Consensus        82 ~~~l~~l~~~l~-~~vvI~~~ng  103 (219)
T TIGR01915        82 LKTLESLRDELS-GKLVISPVVP  103 (219)
T ss_pred             HHHHHHHHHhcc-CCEEEEeccC
Confidence            11  12212233 4788888766

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.88  E-value=9.8e-05  Score=65.76  Aligned_cols=87  Identities=13%  Similarity=0.111  Sum_probs=60.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------------cCHHHHHHhCCeeeeccCccccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------------VKLNEVIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------------~~l~e~~~~aDvvi~~~~~~~~i  178 (258)
                      +|+|+|+|.||..+|..|...|.+|+++++++++.+...+.|...            .+..+. +.+|+|++|+.+...-
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~~   80 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQLP   80 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccHH
Confidence            699999999999999999999999999999777655544445421            234443 7899999997544321


Q ss_pred             c--HHHHhcCCCCcEEEecCCC
Q psy16115        179 T--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      .  ++....+.++..++....|
T Consensus        81 ~~~~~l~~~l~~~~~iv~~~nG  102 (304)
T PRK06522         81 AALPSLAPLLGPDTPVLFLQNG  102 (304)
T ss_pred             HHHHHHhhhcCCCCEEEEecCC
Confidence            1  1233344566777766555

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.88  E-value=8.2e-05  Score=74.43  Aligned_cols=126  Identities=19%  Similarity=0.273  Sum_probs=78.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|++++.+..+..           .|.             .. .++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            68999999999999999999999999999999877543221           111             11 123 44678


Q ss_pred             CCeeeeccC----ccccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEE
Q psy16115        165 VDIVVTATG----NKNVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDL  239 (258)
Q Consensus       165 aDvvi~~~~----~~~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l  239 (258)
                      ||+||+|..    .+.-+-++.-+.++++++|. |++.-+...+.+.+...+ ++.+.+-+     .|...+   ..+.+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~-r~~g~Hff-----~P~~~~---~lVEv  463 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPE-NFCGMHFF-----NPVHRM---PLVEV  463 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCc-cEEEEecC-----Cccccc---ceEEe
Confidence            999999942    22222234445678888885 444336666666554322 34444332     222222   45666


Q ss_pred             ecCCCh
Q psy16115        240 FRKPKS  245 (258)
Q Consensus       240 ~~~~~~  245 (258)
                      |.+++.
T Consensus       464 v~g~~T  469 (715)
T PRK11730        464 IRGEKT  469 (715)
T ss_pred             eCCCCC
Confidence            666653

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.87  E-value=9.8e-05  Score=65.56  Aligned_cols=98  Identities=10%  Similarity=0.028  Sum_probs=64.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC----CEEEEEeCChhh-HHHHHh-C-CCc-ccCHHHHHHhCCeeeeccCcccccc--
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPIC-ALQACM-D-GFS-VVKLNEVIRTVDIVVTATGNKNVVT--  179 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d~~~~~-~~~a~~-~-g~~-~~~l~e~~~~aDvvi~~~~~~~~i~--  179 (258)
                      .+++|||+|.||..+++.+...|    .+|+++++++.. ...... . +.. ..+..+.++++|+|++|.....+..  
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl   81 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL   81 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence            37999999999999999999887    579999886533 222222 2 223 3467778889999999964332211  


Q ss_pred             HHHHhcCCCCcEEEecCCC-Chhhchhhh
Q psy16115        180 REHMDKMKNGCVVCNMGHS-NTEIDVNSL  207 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~-~~~~~~~~l  207 (258)
                      .+....++++..++.+.-| +.+.+-+.+
T Consensus        82 ~~l~~~l~~~~~ivS~~aGi~~~~l~~~~  110 (277)
T PRK06928         82 KDCAPVLTPDRHVVSIAAGVSLDDLLEIT  110 (277)
T ss_pred             HHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence            1222345677788888777 554444444

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.87  E-value=7.7e-05  Score=65.94  Aligned_cols=106  Identities=18%  Similarity=0.276  Sum_probs=70.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----C-CcccCHHHH-HHhCCeeeeccCcc--ccc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----G-FSVVKLNEV-IRTVDIVVTATGNK--NVV  178 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g-~~~~~l~e~-~~~aDvvi~~~~~~--~~i  178 (258)
                      ..+++++|+|.|.+|+.++..+...|.+|+++++++.+.+...+.    + ....++++. ..++|+||.|+...  .-+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~  194 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI  194 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence            468999999999999999999999999999999998765432221    2 122334333 34789999997432  111


Q ss_pred             cH--HHHhcCCCCcEEEecCCC-ChhhchhhhcCCCc
Q psy16115        179 TR--EHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDL  212 (258)
Q Consensus       179 ~~--~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i  212 (258)
                      +.  -..+.++++.+++|+... ....+.+..+...+
T Consensus       195 ~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~  231 (270)
T TIGR00507       195 DEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGT  231 (270)
T ss_pred             CCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCC
Confidence            10  013457899999999776 33344454444333

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=97.86  E-value=4.4e-05  Score=69.00  Aligned_cols=90  Identities=22%  Similarity=0.238  Sum_probs=70.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~~  174 (258)
                      .|++|+|.|.|.+|+.+++.++..|++ ++++++++.+.+.+.+.|++..      +..+.+.      +.|+++.+++.
T Consensus       168 ~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~  247 (345)
T cd08287         168 PGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGT  247 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCC
Confidence            789999999999999999999999995 8888888777666666776321      2222221      37999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...++ ..++.+++++.++.+|..
T Consensus       248 ~~~~~-~~~~~l~~~g~~v~~g~~  270 (345)
T cd08287         248 QESME-QAIAIARPGGRVGYVGVP  270 (345)
T ss_pred             HHHHH-HHHHhhccCCEEEEeccc
Confidence            66665 778899999999998865

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.86  E-value=0.00012  Score=63.29  Aligned_cols=100  Identities=13%  Similarity=0.114  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC---CE-EEEEeCC-hhhHHHHH-hCCCc-ccCHHHHHHhCCeeeeccCccccccH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEID-PICALQAC-MDGFS-VVKLNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G---~~-Vi~~d~~-~~~~~~a~-~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      ...+|+|||+|.+|..++..+...|   .+ +++++++ +++..... ..+.. ..+.+++++++|+|++|+.... + .
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~-~-~   80 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSA-H-E   80 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHH-H-H
Confidence            4578999999999999999998766   23 7777764 55544433 34554 3467888899999999964332 2 1


Q ss_pred             HHHhcC---CCCcEEEecCCC-ChhhchhhhcC
Q psy16115        181 EHMDKM---KNGCVVCNMGHS-NTEIDVNSLRT  209 (258)
Q Consensus       181 ~~l~~~---k~g~~ivnvg~~-~~~~~~~~l~~  209 (258)
                      +.++.+   .++.++|.+.-+ +.+.+-+.+..
T Consensus        81 ~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~~  113 (245)
T PRK07634         81 ELLAELSPLLSNQLVVTVAAGIGPSYLEERLPK  113 (245)
T ss_pred             HHHHHHHhhccCCEEEEECCCCCHHHHHHHcCC
Confidence            333322   135688888777 55554444443

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.84  E-value=0.00011  Score=73.62  Aligned_cols=107  Identities=21%  Similarity=0.282  Sum_probs=70.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|++++.++.+.+           .|.             +. .++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            68999999999999999999999999999999877554321           111             00 123 34678


Q ss_pred             CCeeeeccCc----cccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeec
Q psy16115        165 VDIVVTATGN----KNVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       165 aDvvi~~~~~----~~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~  218 (258)
                      +|+||++.--    +.-+-++.-+.+++++++. |+|.-+...+...+...+ ++.+.+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~-r~ig~H  450 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPE-NFCGMH  450 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcc-cEEEEe
Confidence            9999999422    2222234445678998885 444436666655554322 344443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=97.84  E-value=8.3e-05  Score=66.87  Aligned_cols=89  Identities=18%  Similarity=0.153  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhCCCEEEEEeCChhhHH-----HHHhCCCccc-CHHHHHHhCCeeeeccCcccccc---HHHHhcCCCCcE
Q psy16115        121 GKGCCQSLKGLGCVIYITEIDPICAL-----QACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT---REHMDKMKNGCV  191 (258)
Q Consensus       121 G~~~a~~l~~~G~~Vi~~d~~~~~~~-----~a~~~g~~~~-~l~e~~~~aDvvi~~~~~~~~i~---~~~l~~~k~g~~  191 (258)
                      |..+|+.|...|..|++||+++.+..     ...+.|+... +..++++++|+|++|..+...+.   ...++.+++|.+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI  111 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV  111 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence            88999999999999999999876432     2445677644 68899999999999964443221   246778899999


Q ss_pred             EEecCCCChhhchhhhcC
Q psy16115        192 VCNMGHSNTEIDVNSLRT  209 (258)
Q Consensus       192 ivnvg~~~~~~~~~~l~~  209 (258)
                      +||++..+.+.....++.
T Consensus       112 VID~STIsP~t~~~~~e~  129 (341)
T TIGR01724       112 ICNTCTVSPVVLYYSLEK  129 (341)
T ss_pred             EEECCCCCHHHHHHHHHH
Confidence            999998876666555443

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd08293 PTGR2 Prostaglandin reductase

Probab=97.83  E-value=0.00012  Score=66.01  Aligned_cols=87  Identities=20%  Similarity=0.214  Sum_probs=68.2

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CCCcc------cCHHHHHH-----hCCeeeeccCc
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFSV------VKLNEVIR-----TVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g~~~------~~l~e~~~-----~aDvvi~~~~~  174 (258)
                      |++|+|.|. |.+|+.+++.++.+|+ +|++++.++++.+.+.+ .|++.      .++.+.++     +.|+++.+.+.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999998 9999999999999999 79999888877666554 67642      13333332     47999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      .. + .+.++.++++++++.+|.
T Consensus       235 ~~-~-~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         235 EI-S-DTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HH-H-HHHHHHhccCCEEEEEee
Confidence            54 4 478999999999999884

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.82  E-value=0.00011  Score=66.40  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=70.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc-c------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-V------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-~------~l~e~~~-----~aDvvi~~~~  173 (258)
                      .|++|+|.|. |.+|+.+++.++.+|++|++.++++++...+++ .|++. .      ++.+.+.     +.|+++.+.+
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g  230 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVG  230 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCC
Confidence            7999999998 999999999999999999998888887766666 66531 1      2333232     4799999987


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . ..+. +.++.++++++++.+|..
T Consensus       231 ~-~~~~-~~~~~l~~~G~iv~~G~~  253 (338)
T cd08295         231 G-KMLD-AVLLNMNLHGRIAACGMI  253 (338)
T ss_pred             H-HHHH-HHHHHhccCcEEEEeccc
Confidence            6 3453 789999999999998864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.81  E-value=7.9e-05  Score=67.75  Aligned_cols=87  Identities=15%  Similarity=0.213  Sum_probs=60.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-----------------cCHHHHHHhCCeeeecc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----------------VKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-----------------~~l~e~~~~aDvvi~~~  172 (258)
                      .+|+|||+|.||..+|..|...|.+|+++|+++.. +...+.|...                 .+..+.++.+|+|++|+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence            47999999999999999999999999999987542 3333333321                 11224567899999996


Q ss_pred             Cccc---cccHHHHhcCCCCcEEEecCCC
Q psy16115        173 GNKN---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ~~~~---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+..   ++ .+....++++.+++.+..+
T Consensus        82 k~~~~~~~~-~~l~~~~~~~~iii~~~nG  109 (341)
T PRK08229         82 KSAATADAA-AALAGHARPGAVVVSFQNG  109 (341)
T ss_pred             cCcchHHHH-HHHHhhCCCCCEEEEeCCC
Confidence            5443   22 2334456788888877555

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.81  E-value=4.8e-05  Score=67.20  Aligned_cols=86  Identities=16%  Similarity=0.190  Sum_probs=58.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhC--CCE-EEEEeCChhhHHHHH-hCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL--GCV-IYITEIDPICALQAC-MDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~--G~~-Vi~~d~~~~~~~~a~-~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      +++|||+|.||+.+++.+...  +.+ +.++|+++.+..... ..+.. +.++++++.++|+|++|+..... .....+.
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~~~~~~a   81 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-EEVVPKS   81 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-HHHHHHH
Confidence            799999999999999998875  466 567899987765433 33433 45788888889999999743332 2233334


Q ss_pred             CCCCcEEEecCC
Q psy16115        186 MKNGCVVCNMGH  197 (258)
Q Consensus       186 ~k~g~~ivnvg~  197 (258)
                      ++.|.-++..+.
T Consensus        82 l~~Gk~Vvv~s~   93 (265)
T PRK13304         82 LENGKDVIIMSV   93 (265)
T ss_pred             HHcCCCEEEEch
Confidence            454544444443

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=97.80  E-value=5e-05  Score=69.06  Aligned_cols=89  Identities=22%  Similarity=0.297  Sum_probs=67.9

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~~  174 (258)
                      .|++|+|.| .|-+|....+.+|.+|+++++...++++.+.+++.|++..      ++.+.++      +.|+|+.+.+.
T Consensus       142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~  221 (326)
T COG0604         142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGG  221 (326)
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCH
Confidence            599999999 8889999999999999776665556665557778887532      2444443      47999999865


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...-  +.++.+++++.++.+|..
T Consensus       222 ~~~~--~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         222 DTFA--ASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             HHHH--HHHHHhccCCEEEEEecC
Confidence            5433  578889999999998874

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.80  E-value=0.0002  Score=65.24  Aligned_cols=101  Identities=20%  Similarity=0.240  Sum_probs=71.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCccc-
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNKN-  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~~-  176 (258)
                      ..++++|+|+|.+|+..+..+.. .+. +|.+++|++++.+...+     .+..   ..++++++.++|+|+.|+.... 
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~p  210 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEEP  210 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCCc
Confidence            45899999999999999888875 565 69999999887654322     2443   3467899999999999975544 


Q ss_pred             cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPD  211 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~  211 (258)
                      ++..   +++++|..+..+|..   ..|.+.+.+....
T Consensus       211 ~i~~---~~l~~g~~v~~vg~d~~~~rEld~~~l~~a~  245 (330)
T PRK08291        211 ILKA---EWLHPGLHVTAMGSDAEHKNEIAPAVFAAAD  245 (330)
T ss_pred             EecH---HHcCCCceEEeeCCCCCCcccCCHHHHhhCC
Confidence            5543   346888888877765   2344434444443

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.79  E-value=0.00011  Score=73.78  Aligned_cols=126  Identities=13%  Similarity=0.184  Sum_probs=78.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CC-C------------cc-cCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DG-F------------SV-VKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g-~------------~~-~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|++++.+..+.+           .| .            .. .++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            68999999999999999999999999999999877554322           11 1            01 123 34678


Q ss_pred             CCeeeeccCcc----ccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEE
Q psy16115        165 VDIVVTATGNK----NVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDL  239 (258)
Q Consensus       165 aDvvi~~~~~~----~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l  239 (258)
                      ||+||++.--.    .-+-++.-+.+++++++. |+|.-+...+...+...+ ++.+.+-+.     |...+   ..+.+
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~-r~ig~Hff~-----P~~~m---~LvEv  485 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPE-KVIGMHYFS-----PVDKM---QLLEI  485 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcc-ceEEEeccC-----CcccC---ceEEE
Confidence            99999994222    222224445678998884 555446666666554432 344443332     22222   45555


Q ss_pred             ecCCCh
Q psy16115        240 FRKPKS  245 (258)
Q Consensus       240 ~~~~~~  245 (258)
                      |.+++.
T Consensus       486 v~g~~T  491 (737)
T TIGR02441       486 ITHDGT  491 (737)
T ss_pred             eCCCCC
Confidence            665554

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.78  E-value=4.6e-05  Score=68.33  Aligned_cols=90  Identities=16%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHH-HHhCCeeeeccCccccccHHHHhc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEV-IRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~-~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      .|.+++|.|.|.+|+.+++.++..|.+|++.+.++.+...+.+.|++. .+..+. -+..|+++.+++....+. +.++.
T Consensus       167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~~~~~-~~~~~  245 (329)
T cd08298         167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVGALVP-AALRA  245 (329)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcHHHHH-HHHHH
Confidence            789999999999999999999999999999888887777676777642 121111 124699988865555554 78999


Q ss_pred             CCCCcEEEecCCC
Q psy16115        186 MKNGCVVCNMGHS  198 (258)
Q Consensus       186 ~k~g~~ivnvg~~  198 (258)
                      ++++++++..|..
T Consensus       246 l~~~G~~v~~g~~  258 (329)
T cd08298         246 VKKGGRVVLAGIH  258 (329)
T ss_pred             hhcCCEEEEEcCC
Confidence            9999999988743

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=97.78  E-value=0.00016  Score=65.26  Aligned_cols=90  Identities=24%  Similarity=0.288  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|.|.|.+|..+++.++..|. +|++++.++.+...+.+.|.+.      .++.+.+.      ..|+++.+.+.
T Consensus       167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~  246 (347)
T cd05278         167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGF  246 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCC
Confidence            68999999999999999999999996 7888888777766656665431      12222221      47999998765


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. +.++.++++++++.+|..
T Consensus       247 ~~~~~-~~~~~l~~~G~~v~~g~~  269 (347)
T cd05278         247 EETFE-QAVKVVRPGGTIANVGVY  269 (347)
T ss_pred             HHHHH-HHHHHhhcCCEEEEEcCC
Confidence            44554 778899999999998854

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=97.78  E-value=9.3e-05  Score=66.58  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=69.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCCEEEEEeCChhhHHHHHhCCCccc-------CHHHHH----HhCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVV-------KLNEVI----RTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~~Vi~~d~~~~~~~~a~~~g~~~~-------~l~e~~----~~aDvvi~~~~~~  175 (258)
                      .|.+|+|.|.|.+|..+++.++. +|++|++.+.++++.+.+.+.|++..       +..+.+    .+.|+++.++...
T Consensus       162 ~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~  241 (338)
T PRK09422        162 PGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAK  241 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCCH
Confidence            78999999999999999999998 59999999999888777777776321       112222    2367666666555


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+. +.++.+++++.++.+|..
T Consensus       242 ~~~~-~~~~~l~~~G~~v~~g~~  263 (338)
T PRK09422        242 AAFN-QAVDAVRAGGRVVAVGLP  263 (338)
T ss_pred             HHHH-HHHHhccCCCEEEEEeeC
Confidence            5664 789999999999999865

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.77  E-value=5.4e-05  Score=64.24  Aligned_cols=89  Identities=18%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-HHHHhCC-Cccc--C-HHHHHHhCCeeeeccCccccccH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACMDG-FSVV--K-LNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-~~a~~~g-~~~~--~-l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      ++.|++|+|||.|.+|...++.|...|++|++++++..+. ......+ +...  . .++.+.++|+||.||+.+. +|.
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-lN~   85 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-VNE   85 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH-HHH
Confidence            4799999999999999999999999999999998765332 2222222 2211  1 1344678999999986554 443


Q ss_pred             HHHhcCCCCcEEEecC
Q psy16115        181 EHMDKMKNGCVVCNMG  196 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg  196 (258)
                      ...+..+.+ .++|+.
T Consensus        86 ~i~~~a~~~-~lvn~~  100 (202)
T PRK06718         86 QVKEDLPEN-ALFNVI  100 (202)
T ss_pred             HHHHHHHhC-CcEEEC
Confidence            443334444 567765

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.77  E-value=0.00015  Score=72.58  Aligned_cols=126  Identities=15%  Similarity=0.158  Sum_probs=78.5

Q ss_pred             CEEEEEcCchHHHHHHHHHH-hCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIR  163 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~-~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~  163 (258)
                      ++|+|||+|.||..+|..+. ..|.+|+++|++++.+..+..           .|.             .. .++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            78999999999999999988 789999999999876544321           111             00 123 4567


Q ss_pred             hCCeeeeccCcc----ccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeE
Q psy16115        164 TVDIVVTATGNK----NVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVID  238 (258)
Q Consensus       164 ~aDvvi~~~~~~----~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~  238 (258)
                      ++|+||+|..-.    .-+-++.-+.+++++++..-..+ +...+.+.+...+ +..+.+-+.     |...+   +.+.
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~-r~ig~Hff~-----P~~~~---~lVE  459 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPE-QVIGLHYFS-----PVEKM---PLVE  459 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCccc-ceEEEecCC-----ccccC---ceEE
Confidence            899999994222    22222444567899998644444 6665555554332 344443332     22222   4666


Q ss_pred             EecCCCh
Q psy16115        239 LFRKPKS  245 (258)
Q Consensus       239 l~~~~~~  245 (258)
                      +|.+++.
T Consensus       460 vv~g~~T  466 (708)
T PRK11154        460 VIPHAKT  466 (708)
T ss_pred             EECCCCC
Confidence            6666654

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=97.77  E-value=0.00011  Score=66.15  Aligned_cols=91  Identities=20%  Similarity=0.233  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCccc-C----H----HHHHH--hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSVV-K----L----NEVIR--TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~~-~----l----~e~~~--~aDvvi~~~~~~  175 (258)
                      .|++|+|.|.|.+|+.+++.++..| .+|++++.++.+.....+.|++.. +    .    .+...  ..|+++.+++..
T Consensus       167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~  246 (340)
T cd05284         167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSD  246 (340)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCH
Confidence            6899999999999999999999999 799988888877666666665321 1    1    12222  379999998765


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~  199 (258)
                      ..+. +.++.+++++.++.+|..+
T Consensus       247 ~~~~-~~~~~l~~~g~~i~~g~~~  269 (340)
T cd05284         247 ETLA-LAAKLLAKGGRYVIVGYGG  269 (340)
T ss_pred             HHHH-HHHHHhhcCCEEEEEcCCC
Confidence            5554 7788999999999998663

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=97.77  E-value=0.00014  Score=65.07  Aligned_cols=90  Identities=19%  Similarity=0.258  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH-----HhCCeeeeccCccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI-----RTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~-----~~aDvvi~~~~~~~  176 (258)
                      .|.+|+|.|.|.+|+.+++.++..|.+|++.+.++.+...+.+.|.+..      ...+.+     +..|+++.+.+...
T Consensus       165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~  244 (338)
T cd08254         165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQP  244 (338)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHH
Confidence            6889999999999999999999999999999988887766666665321      222211     23799999987665


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+. +.++.+++++.++.+|..
T Consensus       245 ~~~-~~~~~l~~~G~~v~~g~~  265 (338)
T cd08254         245 TFE-DAQKAVKPGGRIVVVGLG  265 (338)
T ss_pred             HHH-HHHHHhhcCCEEEEECCC
Confidence            664 788999999999999865

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.77  E-value=0.00016  Score=72.24  Aligned_cols=126  Identities=14%  Similarity=0.160  Sum_probs=77.4

Q ss_pred             CEEEEEcCchHHHHHHHHHH-hCCCEEEEEeCChhhHHHHHh-----------CCC-------------cc-cCHHHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLK-GLGCVIYITEIDPICALQACM-----------DGF-------------SV-VKLNEVIR  163 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~-~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~~-~~l~e~~~  163 (258)
                      ++|+|||+|.||..+|..+. ..|.+|+++|++++.+..+..           .+.             .. .++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            68999999999999999987 589999999999876443321           111             11 123 4567


Q ss_pred             hCCeeeeccCcc----ccccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeE
Q psy16115        164 TVDIVVTATGNK----NVVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVID  238 (258)
Q Consensus       164 ~aDvvi~~~~~~----~~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~  238 (258)
                      +||+|++|..-.    .-+-++.-+.+++++++. |+|.-+...+.+.+...+ ++.+.+.+...+.     +   ..+.
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~-r~~g~HffnP~~~-----~---~lVE  454 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPE-NVIGLHYFSPVEK-----M---PLVE  454 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcc-cEEEEecCCcccc-----C---ceEE
Confidence            899999994222    222224445678888885 444436666655554332 3445543332222     1   4566


Q ss_pred             EecCCCh
Q psy16115        239 LFRKPKS  245 (258)
Q Consensus       239 l~~~~~~  245 (258)
                      +|.+++.
T Consensus       455 vv~g~~T  461 (699)
T TIGR02440       455 VIPHAGT  461 (699)
T ss_pred             EeCCCCC
Confidence            6666554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.76  E-value=0.00016  Score=66.34  Aligned_cols=87  Identities=24%  Similarity=0.403  Sum_probs=65.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHH----hCCCc---ccCHHHHHHhCCeeeeccCcc---c
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQAC----MDGFS---VVKLNEVIRTVDIVVTATGNK---N  176 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~----~~g~~---~~~l~e~~~~aDvvi~~~~~~---~  176 (258)
                      -++++|||+|..++..++.+.. +.. +|.+|++++++.+...    +.++.   ..+.++++++||+|++||.+.   .
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~P  208 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNAT  208 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCCc
Confidence            5899999999999988876654 455 5999999998754321    12332   347899999999999997543   4


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++..   +++|+|+.+.-+|..
T Consensus       209 vl~~---~~lkpG~hV~aIGs~  227 (346)
T PRK07589        209 ILTD---DMVEPGMHINAVGGD  227 (346)
T ss_pred             eecH---HHcCCCcEEEecCCC
Confidence            5653   467999999988876

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.76  E-value=6.8e-05  Score=66.25  Aligned_cols=89  Identities=25%  Similarity=0.274  Sum_probs=70.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--CHHHHH-HhCCeeeeccCccccccHHHH
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KLNEVI-RTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--~l~e~~-~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .|.+|.|.|. |.+|+.+++.++.+|++|+..+.++++...+++.|+...  ..++.. ...|+++.+.+.. .+ .+.+
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~~-~~-~~~~  209 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGGP-QL-ARAL  209 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCcH-HH-HHHH
Confidence            6899999999 899999999999999999999888887777767776321  111111 2579999998765 34 3789


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                      +.++++++++.+|..
T Consensus       210 ~~l~~~G~~v~~g~~  224 (305)
T cd08270         210 ELLAPGGTVVSVGSS  224 (305)
T ss_pred             HHhcCCCEEEEEecc
Confidence            999999999999865

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=97.76  E-value=0.00014  Score=64.73  Aligned_cols=89  Identities=15%  Similarity=0.178  Sum_probs=66.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHH----HH--hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEV----IR--TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~----~~--~aDvvi~~~~~  174 (258)
                      +|.+|+|.|. |.+|+.+++.++.+|++++++..+.++.....+.|.+..      ++.+.    ..  ..|+++.+.+.
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  218 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGG  218 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCC
Confidence            7899999986 889999999999999998887666666555555565321      12222    21  48999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . .+ .+.++.++++++++.+|..
T Consensus       219 ~-~~-~~~~~~l~~~g~~v~~g~~  240 (324)
T cd08292         219 K-LA-GELLSLLGEGGTLVSFGSM  240 (324)
T ss_pred             h-hH-HHHHHhhcCCcEEEEEecC
Confidence            4 44 3789999999999999854

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=97.75  E-value=0.00019  Score=66.70  Aligned_cols=89  Identities=20%  Similarity=0.208  Sum_probs=68.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC---------------------------H
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK---------------------------L  158 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~---------------------------l  158 (258)
                      .|.+|+|.|. |.+|+.+++.++.+|+++++.+.++.+...+++.|.+. .+                           +
T Consensus       189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (398)
T TIGR01751       189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRF  268 (398)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhH
Confidence            6899999998 99999999999999999888888877776666666421 11                           1


Q ss_pred             ----HHHH--HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        159 ----NEVI--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       159 ----~e~~--~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                          .++.  ++.|+++.|.+. ..+. ..++.++++++++++|..
T Consensus       269 ~~~~~~~~~~~g~d~vld~~g~-~~~~-~~~~~l~~~G~~v~~g~~  312 (398)
T TIGR01751       269 GKRIRELTGGEDPDIVFEHPGR-ATFP-TSVFVCRRGGMVVICGGT  312 (398)
T ss_pred             HHHHHHHcCCCCceEEEECCcH-HHHH-HHHHhhccCCEEEEEccc
Confidence                1111  248999999875 4454 688899999999999864

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=97.74  E-value=8.3e-05  Score=66.67  Aligned_cols=90  Identities=16%  Similarity=0.188  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-C-----HH-HHHHhCCeeeeccCccccccH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K-----LN-EVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~-----l~-e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      .|.+|+|.|.|.+|+.+++.++..|.+|+++++++.+.....+.|.+.. .     .. ......|+++.+.+....+. 
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~-  240 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAE-  240 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHH-
Confidence            6899999999999999999999999999999988887766655564311 1     11 11135799999876655554 


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      +.++.+++++.++++|..
T Consensus       241 ~~~~~l~~~G~~i~~~~~  258 (330)
T cd08245         241 AALGGLRRGGRIVLVGLP  258 (330)
T ss_pred             HHHHhcccCCEEEEECCC
Confidence            788999999999998854

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=97.74  E-value=9e-05  Score=67.00  Aligned_cols=90  Identities=19%  Similarity=0.294  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-----CHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-----KLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~~------~~aDvvi~~~~~  174 (258)
                      .|++++|.|.|.+|..+++.++..|++ |++++.++.+...+.+.|.+. .     ++.+.+      ++.|+++.+.+.
T Consensus       161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~  240 (340)
T TIGR00692       161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGA  240 (340)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCCC
Confidence            789999999999999999999999997 888888877776666666531 1     222222      247999998776


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. +.++.+++++.++.+|..
T Consensus       241 ~~~~~-~~~~~l~~~g~~v~~g~~  263 (340)
T TIGR00692       241 PKALE-QGLQAVTPGGRVSLLGLP  263 (340)
T ss_pred             HHHHH-HHHHhhcCCCEEEEEccC
Confidence            55564 778889999999999864

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.73  E-value=0.00019  Score=65.29  Aligned_cols=98  Identities=24%  Similarity=0.304  Sum_probs=72.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHH----hC-CC---cccCHHHHHHhCCeeeeccCcc-cc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQAC----MD-GF---SVVKLNEVIRTVDIVVTATGNK-NV  177 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~----~~-g~---~~~~l~e~~~~aDvvi~~~~~~-~~  177 (258)
                      -++++|||+|..++..++.++. ++. +|.+|+++++..+...    +. +.   ...+.++++++||+|+.||.+. .+
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~Pi  209 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEPV  209 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCCe
Confidence            5799999999999999999986 455 6999999998765432    12 22   2347899999999999997544 45


Q ss_pred             ccHHHHhcCCCCcEEEecCCC---ChhhchhhhcC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRT  209 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~  209 (258)
                      +..   +++++|..|..+|..   ..|.+.+.+..
T Consensus       210 l~~---~~l~~G~hI~aiGad~p~k~Eld~e~l~r  241 (330)
T COG2423         210 LKA---EWLKPGTHINAIGADAPGKRELDPEVLAR  241 (330)
T ss_pred             ecH---hhcCCCcEEEecCCCCcccccCCHHHHHh
Confidence            553   357899999999964   34444444433

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.73  E-value=0.00013  Score=65.05  Aligned_cols=97  Identities=15%  Similarity=0.154  Sum_probs=64.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------------cCHHHHHHhCCeeeeccCccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------------~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      +|+|+|+|.||..+|..|...|.+|+++++ +++.+...+.|...              .+.++..+.+|++++|+.+..
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~~   80 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAYQ   80 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecccC
Confidence            699999999999999999999999999998 65554444444321              134444577999999965443


Q ss_pred             ---cccHHHHhcCCCCcEEEecCCC--ChhhchhhhcC
Q psy16115        177 ---VVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRT  209 (258)
Q Consensus       177 ---~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~  209 (258)
                         ++ .+.-..++++..++.+.-|  ..+...+.+..
T Consensus        81 ~~~~~-~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~  117 (305)
T PRK12921         81 LDAAI-PDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGR  117 (305)
T ss_pred             HHHHH-HHHHhhcCCCCEEEEeeCCCChHHHHHHhCCc
Confidence               22 1233345667778766444  34444444443

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.73  E-value=0.00023  Score=62.37  Aligned_cols=108  Identities=18%  Similarity=0.260  Sum_probs=68.1

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeC----------ChhhHH---HHH-hC------------CCccc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICAL---QAC-MD------------GFSVV  156 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~----------~~~~~~---~a~-~~------------g~~~~  156 (258)
                      +.+++|+||+|.|+|.+|+.+|+.|...|++|+ +.|.          +...+.   ... +.            +.+..
T Consensus        33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~  112 (254)
T cd05313          33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF  112 (254)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence            456899999999999999999999999999988 5552          111110   000 01            13334


Q ss_pred             CHHHHHH-hCCeeeeccCccccccHHHHhcCC-CCcEEEecCC-CChhh-chhhhcCCCc
Q psy16115        157 KLNEVIR-TVDIVVTATGNKNVVTREHMDKMK-NGCVVCNMGH-SNTEI-DVNSLRTPDL  212 (258)
Q Consensus       157 ~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k-~g~~ivnvg~-~~~~~-~~~~l~~~~i  212 (258)
                      +.++++. .|||++-|. ..+.|+.+..+.++ +++.+|--|- ++... -.+.|..+.+
T Consensus       113 ~~~~~~~~~~DIliPcA-l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~~a~~~L~~rGI  171 (254)
T cd05313         113 EGKKPWEVPCDIAFPCA-TQNEVDAEDAKLLVKNGCKYVAEGANMPCTAEAIEVFRQAGV  171 (254)
T ss_pred             CCcchhcCCCcEEEecc-ccccCCHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHCCc
Confidence            4555544 699999996 66788888877773 3455544333 32222 2235555555

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.73  E-value=0.00017  Score=65.63  Aligned_cols=82  Identities=24%  Similarity=0.284  Sum_probs=59.1

Q ss_pred             EEEEcCchHHHHHHHHHHhC-CCEEEE-EeCChhhHHH-HHhCCCcc-------------------cCHHHHHHhCCeee
Q psy16115        112 VVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICALQ-ACMDGFSV-------------------VKLNEVIRTVDIVV  169 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~-G~~Vi~-~d~~~~~~~~-a~~~g~~~-------------------~~l~e~~~~aDvvi  169 (258)
                      |+|+|+|.||+.+++.+... ++++++ .|.++++... +...|++.                   -++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            68999999999999998754 577554 6766664322 22233221                   14788888999999


Q ss_pred             eccC-ccccccHHHHhcCCCCcEEE
Q psy16115        170 TATG-NKNVVTREHMDKMKNGCVVC  193 (258)
Q Consensus       170 ~~~~-~~~~i~~~~l~~~k~g~~iv  193 (258)
                      .|++ ..+..+++.+..++++.+++
T Consensus        81 e~Tp~~~~~~na~~~~~~GakaVl~  105 (333)
T TIGR01546        81 DATPGGIGAKNKPLYEKAGVKAIFQ  105 (333)
T ss_pred             ECCCCCCChhhHHHHHhCCcCEEEE
Confidence            9974 55788888888888877664

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.72  E-value=0.00024  Score=63.37  Aligned_cols=103  Identities=10%  Similarity=0.071  Sum_probs=68.0

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CC----Cccc----CHHHHHHhCCeeeeccCcc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DG----FSVV----KLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g----~~~~----~l~e~~~~aDvvi~~~~~~  175 (258)
                      ++.|++++|+|+|-+|++++..|...|+ +|++++|++++.+...+ .+    +...    ++.+.+.++|+||.|+...
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            4689999999999999999999999998 69999999887654322 11    1111    1224456799999997544


Q ss_pred             ccccHHHHh---------cCCCCcEEEecCCC-Chhhchhhhc
Q psy16115        176 NVVTREHMD---------KMKNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       176 ~~i~~~~l~---------~~k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      ..++...+.         .++++..++|+--. .+..++..-+
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~  244 (282)
T TIGR01809       202 VPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPTPLVAIVS  244 (282)
T ss_pred             CCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCCHHHHHHH
Confidence            444433322         13456778887654 3444444333

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.72  E-value=0.0002  Score=63.89  Aligned_cols=108  Identities=19%  Similarity=0.153  Sum_probs=72.2

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CC-----Ccc---cCHHHHHHhCCeeeecc--C
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DG-----FSV---VKLNEVIRTVDIVVTAT--G  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g-----~~~---~~l~e~~~~aDvvi~~~--~  173 (258)
                      .+.+++|+|+|+|.+|++++..|...|+ +|+++||+..+.+...+ .+     ...   .++.+.+.++|+||.|+  |
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            4688999999999999999999999998 69999999887654322 11     111   23445667899999995  3


Q ss_pred             cc---c-cccHHHHhcCCCCcEEEecCCC-Chhhchh-hhcCCCceeee
Q psy16115        174 NK---N-VVTREHMDKMKNGCVVCNMGHS-NTEIDVN-SLRTPDLTWEK  216 (258)
Q Consensus       174 ~~---~-~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~-~l~~~~i~~~~  216 (258)
                      ..   . .++   .+.++++.++.|+--. .+..++. +-+.|.-.+.|
T Consensus       204 m~~~~~~~~~---~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~~~~~G  249 (284)
T PRK12549        204 MAKHPGLPLP---AELLRPGLWVADIVYFPLETELLRAARALGCRTLDG  249 (284)
T ss_pred             CCCCCCCCCC---HHHcCCCcEEEEeeeCCCCCHHHHHHHHCCCeEecC
Confidence            21   1 233   2457888899998766 3333444 33444333333

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.71  E-value=0.00017  Score=67.91  Aligned_cols=108  Identities=20%  Similarity=0.287  Sum_probs=70.0

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE--------Ee---CChhhH---HHHH------------hC-CCccc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI--------TE---IDPICA---LQAC------------MD-GFSVV  156 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~--------~d---~~~~~~---~~a~------------~~-g~~~~  156 (258)
                      +.++.|+||+|-|+|.+|..+|+.|...|++|++        ||   .+..+.   .+.+            .. +.+..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            5678999999999999999999999999999888        77   444432   1111            11 22333


Q ss_pred             CHHHHHH-hCCeeeeccCccccccHHHHhcC-CCCcEEEecCCC-Ch-hhchhhhcCCCc
Q psy16115        157 KLNEVIR-TVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHS-NT-EIDVNSLRTPDL  212 (258)
Q Consensus       157 ~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~-k~g~~ivnvg~~-~~-~~~~~~l~~~~i  212 (258)
                      +.++++. .|||++-|. ..+.|+.+..+.+ +.++.+|-=|-. .. ..-.+.|..+.|
T Consensus       303 ~~~~~~~~~cDVliPcA-l~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~iL~~rGI  361 (445)
T PRK14030        303 AGKKPWEQKVDIALPCA-TQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAIDKFIAAKQ  361 (445)
T ss_pred             CCccceeccccEEeecc-ccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHCCC
Confidence            3444443 589999987 6678887777776 334555544433 21 112245555555

>PLN02477 glutamate dehydrogenase

Probab=97.70  E-value=0.00014  Score=67.97  Aligned_cols=108  Identities=18%  Similarity=0.323  Sum_probs=69.7

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeCC----------hhhHHHHHhC--------CCcccCHHHHH-
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICALQACMD--------GFSVVKLNEVI-  162 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~~----------~~~~~~a~~~--------g~~~~~l~e~~-  162 (258)
                      .+.+++|++|+|.|+|.+|+.+|+.|...|++|+ +.|.+          ...+.+.++.        +.+..+.++++ 
T Consensus       200 ~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~  279 (410)
T PLN02477        200 HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV  279 (410)
T ss_pred             cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence            4567899999999999999999999999999988 66765          4433222111        11223334443 


Q ss_pred             HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhh-chhhhcCCCc
Q psy16115        163 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI-DVNSLRTPDL  212 (258)
Q Consensus       163 ~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~-~~~~l~~~~i  212 (258)
                      ..+||++-|. ..+.|+++....++-. +|+-.+.+.... --+.|..+.|
T Consensus       280 ~~~DvliP~A-l~~~I~~~na~~i~ak-~I~egAN~p~t~ea~~~L~~rGI  328 (410)
T PLN02477        280 EPCDVLIPAA-LGGVINKENAADVKAK-FIVEAANHPTDPEADEILRKKGV  328 (410)
T ss_pred             ccccEEeecc-ccccCCHhHHHHcCCc-EEEeCCCCCCCHHHHHHHHHCCc
Confidence            3699999987 5668888888877532 334333332221 1245555555

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.69  E-value=0.00011  Score=64.55  Aligned_cols=87  Identities=14%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC---CE-EEEEeCChhhHHHHHhCCCc-ccCHHHH-HHhCCeeeeccCccccccHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEIDPICALQACMDGFS-VVKLNEV-IRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G---~~-Vi~~d~~~~~~~~a~~~g~~-~~~l~e~-~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .+|+|||+|.||+.+++.+..-+   .+ +.++++++.+....... .. ..+++++ ....|+|++|.+...+- +-..
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~-e~~~   80 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIA-EHAE   80 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHH-HHHH
Confidence            58999999999999999987542   45 55578777554333222 33 3468887 46799999997554433 2444


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                      +.++.|.-++-.|.|
T Consensus        81 ~iL~~g~dlvv~SvG   95 (267)
T PRK13301         81 GCLTAGLDMIICSAG   95 (267)
T ss_pred             HHHhcCCCEEEEChh
Confidence            556666666666665

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=97.69  E-value=4.2e-05  Score=68.61  Aligned_cols=90  Identities=23%  Similarity=0.224  Sum_probs=68.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-----CHHH--HH--HhCCeeeeccCccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-----KLNE--VI--RTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e--~~--~~aDvvi~~~~~~~  176 (258)
                      +|++|+|+|.|.+|+.+++.++..|++ |++++.++.+...+.+.|... .     +..+  ..  +..|+++.+.+...
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~  238 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPK  238 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChH
Confidence            789999999999999999999999997 888888887766655555531 1     1111  11  24799999986555


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+. +.++.+++++.++++|..
T Consensus       239 ~~~-~~~~~l~~~G~~v~~g~~  259 (334)
T cd08234         239 TLE-QAIEYARRGGTVLVFGVY  259 (334)
T ss_pred             HHH-HHHHHHhcCCEEEEEecC
Confidence            554 778889999999999865

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=97.68  E-value=0.00015  Score=64.23  Aligned_cols=90  Identities=19%  Similarity=0.168  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc------cCHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV------VKLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~------~~aDvvi~~~~~  174 (258)
                      +|.+++|.|.|.+|..+++.++..|++ |++...++++...+.+.|+..      .++.+.+      .+.|+++.+.+.
T Consensus       129 ~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~  208 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGH  208 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            789999999999999999999999998 988888877766555666531      1222222      137999999766


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. ..++.+++++.++++|..
T Consensus       209 ~~~~~-~~~~~l~~~g~~~~~g~~  231 (312)
T cd08269         209 QWPLD-LAGELVAERGRLVIFGYH  231 (312)
T ss_pred             HHHHH-HHHHHhccCCEEEEEccC
Confidence            55564 678899999999999864

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=97.68  E-value=0.00023  Score=63.60  Aligned_cols=88  Identities=24%  Similarity=0.247  Sum_probs=69.5

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|++|+|.| .|.+|..+++.++.+|++|++++.++++...+++.|++.      .++.+.++     +.|+++.+.+. 
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~-  221 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG-  221 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH-
Confidence            789999999 599999999999999999999988888877777777642      12322222     36999998876 


Q ss_pred             ccccHHHHhcCCCCcEEEecCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      ..+ .+.++.++++++++.+|.
T Consensus       222 ~~~-~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         222 EFS-STVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             HHH-HHHHHhhccCCEEEEEcc
Confidence            344 478899999999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.68  E-value=0.00016  Score=69.31  Aligned_cols=68  Identities=24%  Similarity=0.342  Sum_probs=53.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHHhCCeeeeccCc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~~aDvvi~~~~~  174 (258)
                      +.|++|+|+|+|.+|+++++.|+..|++|+++|..+.+...+.+.|+...   ...+.++++|+|+.+++-
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi   80 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGF   80 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCC
Confidence            47899999999999999999999999999999987665544555676543   234556789999998653

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.68  E-value=0.00018  Score=67.74  Aligned_cols=94  Identities=17%  Similarity=0.219  Sum_probs=64.4

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE-Ee----------CChhhHH---HHH------------hCCCccc
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TE----------IDPICAL---QAC------------MDGFSVV  156 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d----------~~~~~~~---~a~------------~~g~~~~  156 (258)
                      .+.++.|++|+|.|+|++|...|+.|..+|++|++ .|          .+...+.   ..+            ..++...
T Consensus       222 ~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i  301 (444)
T PRK14031        222 KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV  301 (444)
T ss_pred             cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc
Confidence            35679999999999999999999999999999876 66          4443321   000            0123333


Q ss_pred             CHHHHHH-hCCeeeeccCccccccHHHHhcCCC-CcEEEecCC
Q psy16115        157 KLNEVIR-TVDIVVTATGNKNVVTREHMDKMKN-GCVVCNMGH  197 (258)
Q Consensus       157 ~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k~-g~~ivnvg~  197 (258)
                      +.++.+. .|||++-|. ..+.|+.+..+.++. ++.+|--|-
T Consensus       302 ~~d~~~~~~cDIliPaA-l~n~I~~~na~~l~a~g~~~V~EgA  343 (444)
T PRK14031        302 EGARPWGEKGDIALPSA-TQNELNGDDARQLVANGVIAVSEGA  343 (444)
T ss_pred             CCcccccCCCcEEeecc-cccccCHHHHHHHHhcCCeEEECCC
Confidence            4444433 689999987 567888888888764 454444443

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=97.65  E-value=0.00053  Score=61.27  Aligned_cols=111  Identities=23%  Similarity=0.329  Sum_probs=75.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEe--CChhhHHHHHhCCCccc-----CHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE--IDPICALQACMDGFSVV-----KLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d--~~~~~~~~a~~~g~~~~-----~l~e~~------~~aDvvi~~~~~  174 (258)
                      .|.+|+|.|.|.+|..+++.++..|++|+++.  .+..+...+.+.|++..     ++.+.+      +..|+++.+.+.
T Consensus       164 ~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~  243 (306)
T cd08258         164 PGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAVNGGEEDLAELVNEITDGDGADVVIECSGA  243 (306)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHhCCcccCCCcCCHHHHHHHHcCCCCCCEEEECCCC
Confidence            68999999999999999999999999987753  33444444555565311     222222      137999998765


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeecc
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~  219 (258)
                      ...+. +.++.+++++.++++|...   .+..+..+..+++++.++..
T Consensus       244 ~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~  290 (306)
T cd08258         244 VPALE-QALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRS  290 (306)
T ss_pred             hHHHH-HHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEec
Confidence            55554 7788899999999998752   22233344456677776643

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=97.65  E-value=7.3e-05  Score=67.52  Aligned_cols=88  Identities=20%  Similarity=0.299  Sum_probs=66.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHH--HH--HhCCeeeeccCccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNE--VI--RTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e--~~--~~aDvvi~~~~~~~  176 (258)
                      .|++|+|.|. |.+|+.+++.++..|++|++.+.+. +...+.+.|++..      ...+  ..  +..|+++.+.+.. 
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-  254 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRALGADTVILRDAPLLADAKALGGEPVDVVADVVGGP-  254 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCHH-
Confidence            6899999998 9999999999999999988877554 5555666665321      1122  11  2479999998764 


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .++ +.++.+++++.++++|..
T Consensus       255 ~~~-~~~~~l~~~G~~v~~g~~  275 (350)
T cd08274         255 LFP-DLLRLLRPGGRYVTAGAI  275 (350)
T ss_pred             HHH-HHHHHhccCCEEEEeccc
Confidence            443 788999999999998754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.65  E-value=0.00018  Score=63.31  Aligned_cols=121  Identities=19%  Similarity=0.171  Sum_probs=76.8

Q ss_pred             HHHHHHhCC--CEEEEEeCChhhHHHHHhCCCccc--CHHHHHHhCCeeeeccC---ccccccHHHHhcCCCCcEEEecC
Q psy16115        124 CCQSLKGLG--CVIYITEIDPICALQACMDGFSVV--KLNEVIRTVDIVVTATG---NKNVVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       124 ~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~g~~~~--~l~e~~~~aDvvi~~~~---~~~~i~~~~l~~~k~g~~ivnvg  196 (258)
                      +|+.|+..|  .+|+++|+++.....+.+.|+...  +-.+.++++|+|++|+.   ...++. +....++++++++|+|
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~-~~~~~~~~~~iv~Dv~   79 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLE-EIAPYLKPGAIVTDVG   79 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHH-HHHCGS-TTSEEEE--
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHH-HhhhhcCCCcEEEEeC
Confidence            477888888  589999999999888888887532  22577899999999963   334443 5556689999999999


Q ss_pred             CCChhh--chhhhcCCCceeeeeccCcce----eecCCCccCCCceeEEecCCCh
Q psy16115        197 HSNTEI--DVNSLRTPDLTWEKVRSQVDH----VIWPDVNLKNNTVIDLFRKPKS  245 (258)
Q Consensus       197 ~~~~~~--~~~~l~~~~i~~~~~~~~~~~----~~~~~~~l~~~~~~~l~~~~~~  245 (258)
                      .-....  .+.........+.+.+|....    +..+...+-.+..+.+++++..
T Consensus        80 SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~  134 (258)
T PF02153_consen   80 SVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDT  134 (258)
T ss_dssp             S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS
T ss_pred             CCCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCC
Confidence            874332  222222245677777765422    4455555556777778876654

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=97.63  E-value=0.00028  Score=62.98  Aligned_cols=89  Identities=19%  Similarity=0.157  Sum_probs=67.3

Q ss_pred             CCC-EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c---CHHHHH-----HhCCeeeeccCccc
Q psy16115        108 GGK-QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V---KLNEVI-----RTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~-~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~---~l~e~~-----~~aDvvi~~~~~~~  176 (258)
                      .|. +|+|.|. |.+|..+++.++..|+++++...++.+...+.+.|++. .   +....+     ...|+++.+.+.. 
T Consensus       144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~-  222 (323)
T TIGR02823       144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGH-  222 (323)
T ss_pred             CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCcEEEccccHHHHHHHhcCCCceEEEECccHH-
Confidence            677 9999998 99999999999999999888777766666666666531 1   111111     1369999998765 


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .++ +.++.++++++++++|..
T Consensus       223 ~~~-~~~~~l~~~G~~v~~g~~  243 (323)
T TIGR02823       223 TLA-NVLAQLKYGGAVAACGLA  243 (323)
T ss_pred             HHH-HHHHHhCCCCEEEEEccc
Confidence            454 789999999999999864

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.62  E-value=0.0003  Score=66.27  Aligned_cols=109  Identities=20%  Similarity=0.255  Sum_probs=71.2

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeCC----------hhhHH---HHHh-------------CCCcc
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICAL---QACM-------------DGFSV  155 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~~----------~~~~~---~a~~-------------~g~~~  155 (258)
                      .+.++.|+||+|-|+|.+|+.+|+.|...|++|+ +.|.+          ..++.   ..+.             .+++.
T Consensus       231 ~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~  310 (454)
T PTZ00079        231 LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY  310 (454)
T ss_pred             cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence            3567899999999999999999999999999977 77766          33321   1111             02223


Q ss_pred             cCHHHHH-HhCCeeeeccCccccccHHHHhcC-CCCcEEEecCCC-Ch-hhchhhhcCCCc
Q psy16115        156 VKLNEVI-RTVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHS-NT-EIDVNSLRTPDL  212 (258)
Q Consensus       156 ~~l~e~~-~~aDvvi~~~~~~~~i~~~~l~~~-k~g~~ivnvg~~-~~-~~~~~~l~~~~i  212 (258)
                      .+.++.+ ..|||.+-|. +.+.|+.+..+.+ +.++.+|--|-. +. ..-.+.|..+.|
T Consensus       311 ~~~~~~~~~~cDI~iPcA-~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~~L~~~GI  370 (454)
T PTZ00079        311 VPGKKPWEVPCDIAFPCA-TQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATHLFKKNGV  370 (454)
T ss_pred             eCCcCcccCCccEEEecc-ccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHCCc
Confidence            3333333 2689999987 6778887777765 666777765554 21 122244555544

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.62  E-value=0.00011  Score=59.82  Aligned_cols=87  Identities=16%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC-Ccc--cCH-HHHHHhCCeeeeccCccccccHH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG-FSV--VKL-NEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g-~~~--~~l-~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      ++.|++|+|+|.|.+|...++.|...|++|+++++...  ++..+.+ ...  ..+ ++-+.++|+|+.+++... +|..
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~--~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~~   86 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEIC--KEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA-VNMM   86 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccC--HHHHhccCcEEEecccChhcCCCceEEEECCCCHH-HHHH
Confidence            57999999999999999999999999999999864432  2222222 111  111 223567899999885554 4433


Q ss_pred             HHhcCCCCcEEEecC
Q psy16115        182 HMDKMKNGCVVCNMG  196 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg  196 (258)
                      .....+.+ .++|+.
T Consensus        87 i~~~a~~~-~~vn~~  100 (157)
T PRK06719         87 VKQAAHDF-QWVNVV  100 (157)
T ss_pred             HHHHHHHC-CcEEEC
Confidence            33333444 456644

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.62  E-value=0.00032  Score=66.19  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEE-e----------CChhhHHHHHhC------------CCcccCHHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT-E----------IDPICALQACMD------------GFSVVKLNE  160 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~-d----------~~~~~~~~a~~~------------g~~~~~l~e  160 (258)
                      +.++.|++|+|.|+|.+|+.+|+.|..+|++|+++ |          .+...+.+.++.            +.+..+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            56789999999999999999999999999998876 7          555543322211            122233444


Q ss_pred             HHH-hCCeeeeccCccccccHHHHhcC-CCCcEEEecCCC-Chhh-chhhhcCCCc
Q psy16115        161 VIR-TVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHS-NTEI-DVNSLRTPDL  212 (258)
Q Consensus       161 ~~~-~aDvvi~~~~~~~~i~~~~l~~~-k~g~~ivnvg~~-~~~~-~~~~l~~~~i  212 (258)
                      ++. .|||++.|+ ..+.++.+....+ ++++.+|--|-. +... -.+.|..+.|
T Consensus       307 i~~~d~DVliPaA-l~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~~L~~rGI  361 (445)
T PRK09414        307 PWSVPCDIALPCA-TQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIEVFLEAGV  361 (445)
T ss_pred             ccccCCcEEEecC-CcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHHHHHHCCc
Confidence            443 699999997 5667777766666 334555544433 2221 2235555555

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=97.62  E-value=0.00016  Score=64.71  Aligned_cols=85  Identities=20%  Similarity=0.256  Sum_probs=63.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----C----HHHHHHhCCeeeeccCccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----K----LNEVIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~----l~e~~~~aDvvi~~~~~~~~i  178 (258)
                      .|.+|+|.|. |.+|+.+++.++..|++|+++++.    ..+.+.|++..    +    +.++....|+++.+++.. .+
T Consensus       162 ~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~----~~~~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~~g~~-~~  236 (325)
T cd08264         162 PGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWLKEFGADEVVDYDEVEEKVKEITKMADVVINSLGSS-FW  236 (325)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH----HHHHHhCCCeeecchHHHHHHHHHhCCCCEEEECCCHH-HH
Confidence            7899999998 999999999999999998887642    23344554311    1    111223579999998763 45


Q ss_pred             cHHHHhcCCCCcEEEecCCC
Q psy16115        179 TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . +.++.+++++.++++|..
T Consensus       237 ~-~~~~~l~~~g~~v~~g~~  255 (325)
T cd08264         237 D-LSLSVLGRGGRLVTFGTL  255 (325)
T ss_pred             H-HHHHhhccCCEEEEEecC
Confidence            4 789999999999998853

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.58  E-value=0.00012  Score=68.60  Aligned_cols=85  Identities=41%  Similarity=0.643  Sum_probs=74.4

Q ss_pred             chheeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHH
Q psy16115          6 TVQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDE   79 (258)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~   79 (258)
                      ..-++++.+|++|+.++.+||.++      .|+++..+++..+ .++..+|+.+|+.+++++|.+.+..++..++.+++.
T Consensus       323 ~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~-~~~~~kV~~~p~~~d~~vA~~~l~~~g~~~~~lt~~  401 (413)
T cd00401         323 RRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNR-DKYEVGVYFLPKKLDEEVARLHLGKLGVKLTKLTDK  401 (413)
T ss_pred             chhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcC-CcCCCcEEECCHHHHHHHHHHHHHhcCceeccCCHH
Confidence            355788999999999999999553      5899999999883 556789999999999999999999999999999999


Q ss_pred             HHHhhhcccCCC
Q psy16115         80 QAKYMGLNKAGP   91 (258)
Q Consensus        80 ~~~~~~~~~~g~   91 (258)
                      +.+|+..|+.|+
T Consensus       402 q~~y~~~~~~g~  413 (413)
T cd00401         402 QAEYLGVPVEGP  413 (413)
T ss_pred             HHHHhcCCcCCC
Confidence            999998877663

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.57  E-value=0.00037  Score=64.17  Aligned_cols=88  Identities=18%  Similarity=0.199  Sum_probs=61.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---ccCHHH------------------HHHhCCee
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNE------------------VIRTVDIV  168 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e------------------~~~~aDvv  168 (258)
                      .+++|+|+|-||+.+|.++...|.+|+++|+++.+.... ..|..   ..++++                  .++.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~l-n~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKL-NRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHH-hCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEE
Confidence            899999999999999999999999999999998876432 22221   122332                  23368999


Q ss_pred             eeccCccc----------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        169 VTATGNKN----------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       169 i~~~~~~~----------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.|..|+-          +.+  +..-+.||+|..+|--|..
T Consensus        89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~  130 (436)
T COG0677          89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTT  130 (436)
T ss_pred             EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            99843331          111  1223568999999887765

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=97.57  E-value=0.00026  Score=63.19  Aligned_cols=89  Identities=22%  Similarity=0.192  Sum_probs=69.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-C---H-HHHH-----HhCCeeeeccCccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K---L-NEVI-----RTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~---l-~e~~-----~~aDvvi~~~~~~~  176 (258)
                      .|++|+|.|. |.+|..+++.++..|++|++.++++++...+.+.|+... +   . .+.+     ...|+++.+.+.. 
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~-  224 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK-  224 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-
Confidence            4789999998 999999999999999999999988888777777776321 1   1 1111     1379999998763 


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+. +.++.++++++++.+|..
T Consensus       225 ~~~-~~~~~l~~~G~~i~~g~~  245 (326)
T cd08289         225 TLA-YLLSTLQYGGSVAVSGLT  245 (326)
T ss_pred             HHH-HHHHHhhcCCEEEEEeec
Confidence            454 789999999999999864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=97.56  E-value=0.00036  Score=61.71  Aligned_cols=89  Identities=22%  Similarity=0.322  Sum_probs=68.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHHHH----HhCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNEVI----RTVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~----~~aDvvi~~~~~~~~  177 (258)
                      .|++|+|.|. |.+|+.+++.++..|++|++...++++...+.+.|++..     ++.+.+    ...|+++.+.+. ..
T Consensus       142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~~~~-~~  220 (320)
T cd08243         142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKELGADEVVIDDGAIAEQLRAAPGGFDKVLELVGT-AT  220 (320)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEecCccHHHHHHHhCCCceEEEECCCh-HH
Confidence            6899999997 899999999999999999988888877766666665321     222211    248999998875 34


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +. +.++.++++++++.+|..
T Consensus       221 ~~-~~~~~l~~~g~~v~~g~~  240 (320)
T cd08243         221 LK-DSLRHLRPGGIVCMTGLL  240 (320)
T ss_pred             HH-HHHHHhccCCEEEEEccC
Confidence            54 778899999999999863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00024  Score=65.71  Aligned_cols=93  Identities=22%  Similarity=0.334  Sum_probs=66.1

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh------------------hHHH-HHhCCCcccCHHHHHH-
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI------------------CALQ-ACMDGFSVVKLNEVIR-  163 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~------------------~~~~-a~~~g~~~~~l~e~~~-  163 (258)
                      +.++.|+||+|-|+|++|+.+|+.+...|++|++++-+.-                  +... ....+.++.+-++++. 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~  281 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV  281 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence            4458999999999999999999999999999888765433                  1111 1112444444455554 


Q ss_pred             hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        164 TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       164 ~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .|||.+-|. +.+.|+.+..+.++.. +++-.+.+
T Consensus       282 ~cDIl~PcA-~~n~I~~~na~~l~ak-~V~EgAN~  314 (411)
T COG0334         282 DCDILIPCA-LENVITEDNADQLKAK-IVVEGANG  314 (411)
T ss_pred             cCcEEcccc-cccccchhhHHHhhhc-EEEeccCC
Confidence            689998886 6777888888888766 55555544

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.55  E-value=0.00059  Score=65.26  Aligned_cols=103  Identities=13%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcccCHHHH--HHhCCeeeeccCccccccH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVVKLNEV--IRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~~l~e~--~~~aDvvi~~~~~~~~i~~  180 (258)
                      +.++.+++++|+|.|.+|+.++..+...|++|+++++++.+.+... ..+....+.++.  +.++|+|+.|+.....+. 
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~-  405 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIP-  405 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcch-
Confidence            4457899999999999999999999999999999999887654332 222222233332  467899999974433343 


Q ss_pred             HHHhcCCCCcEEEecCCC-ChhhchhhhcCCCc
Q psy16115        181 EHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDL  212 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i  212 (258)
                      +.+   .  .+++|+.-. ....++...+....
T Consensus       406 ~~l---~--~~v~D~~Y~P~~T~ll~~A~~~G~  433 (477)
T PRK09310        406 KAF---P--PCVVDINTLPKHSPYTQYARSQGS  433 (477)
T ss_pred             hHH---h--hhEEeccCCCCCCHHHHHHHHCcC
Confidence            333   2  378888766 33334454444333

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=97.54  E-value=0.00021  Score=64.48  Aligned_cols=90  Identities=20%  Similarity=0.291  Sum_probs=67.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHH----HHHH--hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLN----EVIR--TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~----e~~~--~aDvvi~~~~~  174 (258)
                      +|++|+|.|.|.+|..+++.++..|.+ |++++.++.+.....+.|.+..      +..    +...  ..|+++.+.+.
T Consensus       165 ~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~  244 (343)
T cd08235         165 PGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGS  244 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEECCCC
Confidence            789999999999999999999999998 8888888777665555554321      121    2222  37999998775


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. ..++.+++++.++..|..
T Consensus       245 ~~~~~-~~~~~l~~~g~~v~~~~~  267 (343)
T cd08235         245 PEAQA-QALELVRKGGRILFFGGL  267 (343)
T ss_pred             hHHHH-HHHHHhhcCCEEEEEecc
Confidence            55554 678889999999988754

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.54  E-value=0.00022  Score=69.44  Aligned_cols=69  Identities=26%  Similarity=0.329  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh---------------------hhHHHHHhCCCcc-------c--C
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP---------------------ICALQACMDGFSV-------V--K  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~---------------------~~~~~a~~~g~~~-------~--~  157 (258)
                      .|++|+|||.|++|..+|..|+..|++|+++|..+                     .+...+.+.|++.       .  +
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~  215 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT  215 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence            79999999999999999999999999999998532                     2334455667642       1  2


Q ss_pred             HHHHHHhCCeeeeccCccc
Q psy16115        158 LNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       158 l~e~~~~aDvvi~~~~~~~  176 (258)
                      .++...+.|+|++++|...
T Consensus       216 ~~~~~~~~D~Vi~AtG~~~  234 (564)
T PRK12771        216 LEQLEGEFDAVFVAIGAQL  234 (564)
T ss_pred             HHHHHhhCCEEEEeeCCCC
Confidence            3344456899999976543

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=97.53  E-value=0.00017  Score=64.13  Aligned_cols=92  Identities=24%  Similarity=0.360  Sum_probs=71.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---------------C----------HHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---------------K----------LNEV  161 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---------------~----------l~e~  161 (258)
                      .++.++.++|+|-+|...+...+..|+-|..+|..+.+.++-...|....               +          +.+.
T Consensus       162 v~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~~  241 (356)
T COG3288         162 VSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAEQ  241 (356)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHHH
Confidence            57789999999999999999999999999999998887655443332211               1          2334


Q ss_pred             HHhCCeeeec---cC--ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        162 IRTVDIVVTA---TG--NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       162 ~~~aDvvi~~---~~--~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +++.||||.+   +|  .+.++.++..+.||||.++||.+-.
T Consensus       242 ~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~  283 (356)
T COG3288         242 AKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAE  283 (356)
T ss_pred             hcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhh
Confidence            5578999997   33  4568999999999999999998754

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=97.51  E-value=0.00087  Score=60.75  Aligned_cols=90  Identities=27%  Similarity=0.293  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHH----H-hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVI----R-TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~-~aDvvi~~~~~~  175 (258)
                      .|++|+|.|.|.+|..+++.++..|+ +|++.+.++.+...+.+.|++..      +..+.+    . ..|+++.+.+..
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~  254 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNS  254 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCCH
Confidence            68999999999999999999999999 68888888887766666665321      111112    2 479999998765


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+. +.++.|+++++++.+|..
T Consensus       255 ~~~~-~~~~~l~~~g~~v~~g~~  276 (350)
T cd08240         255 ATAS-LAFDILAKGGKLVLVGLF  276 (350)
T ss_pred             HHHH-HHHHHhhcCCeEEEECCC
Confidence            5665 789999999999998765

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.49  E-value=0.00053  Score=52.44  Aligned_cols=65  Identities=26%  Similarity=0.325  Sum_probs=50.8

Q ss_pred             EEEEEcCchHHHHHHHHHHhC--CCEE-EEEeCChhhHHH-HHhCCCc-ccCHHHHHH--hCCeeeeccCcc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL--GCVI-YITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGNK  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~--G~~V-i~~d~~~~~~~~-a~~~g~~-~~~l~e~~~--~aDvvi~~~~~~  175 (258)
                      +++|||+|.+|+.....++..  +.++ -++|+++.+.+. +...+.. +.+++++++  +.|+|++++.+.
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~   73 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPS   73 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGG
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCc
Confidence            689999999999999888877  3464 468999987664 4456665 568999998  689999997544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=97.48  E-value=0.00044  Score=63.29  Aligned_cols=90  Identities=24%  Similarity=0.327  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHH-H---H--HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNE-V---I--RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e-~---~--~~aDvvi~~~~~  174 (258)
                      .|++|+|.|.|.+|+.+++.++..|++ |++++.++.+...+.+.|++..      +..+ +   .  ...|+++.+.+.
T Consensus       187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~  266 (367)
T cd08263         187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALGK  266 (367)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCC
Confidence            688999999999999999999999997 8888888777666656665311      2221 1   2  137999998776


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. +.++.+++++.++++|..
T Consensus       267 ~~~~~-~~~~~l~~~G~~v~~g~~  289 (367)
T cd08263         267 PETFK-LALDVVRDGGRAVVVGLA  289 (367)
T ss_pred             HHHHH-HHHHHHhcCCEEEEEccC
Confidence            53454 788899999999999865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=97.47  E-value=0.00028  Score=63.68  Aligned_cols=90  Identities=26%  Similarity=0.307  Sum_probs=67.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc-c-----CHHHH---HH--hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV-V-----KLNEV---IR--TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~---~~--~aDvvi~~~~~~  175 (258)
                      .|.+|+|.|.|.+|..+++.++.+|++ |++++.++.+.....+.|... .     +.+++   ..  +.|+++.|.+..
T Consensus       159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~  238 (343)
T cd08236         159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSP  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCH
Confidence            688999999999999999999999997 999888776665555555421 1     12222   22  379999997665


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+. ..++.+++++.++.+|..
T Consensus       239 ~~~~-~~~~~l~~~G~~v~~g~~  260 (343)
T cd08236         239 ATIE-QALALARPGGKVVLVGIP  260 (343)
T ss_pred             HHHH-HHHHHhhcCCEEEEEccc
Confidence            5554 778889999999999865

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.47  E-value=0.00047  Score=60.23  Aligned_cols=105  Identities=23%  Similarity=0.387  Sum_probs=69.0

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEE--------eCChhhHHHHH----hCCC-------------cccCHH-
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--------EIDPICALQAC----MDGF-------------SVVKLN-  159 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~--------d~~~~~~~~a~----~~g~-------------~~~~l~-  159 (258)
                      ++.|++|.|-|+|.+|..+|+.|...|++|+.+        |++........    +.+.             +..+-+ 
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  108 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD  108 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence            479999999999999999999999999997665        54433322111    1121             112222 


Q ss_pred             HHH-HhCCeeeeccCccccccHHHHh-cCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115        160 EVI-RTVDIVVTATGNKNVVTREHMD-KMKNGCVVCNMGHS---NTEIDVNSLRTPDL  212 (258)
Q Consensus       160 e~~-~~aDvvi~~~~~~~~i~~~~l~-~~k~g~~ivnvg~~---~~~~~~~~l~~~~i  212 (258)
                      +++ ..+||++-|. ..+.|+.+... .++.++.+|--|-.   ..++. ..|.++.|
T Consensus       109 ~il~~~~DiliP~A-~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~-~~L~~rGI  164 (244)
T PF00208_consen  109 EILSVDCDILIPCA-LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEAD-EILRERGI  164 (244)
T ss_dssp             HGGTSSSSEEEEES-SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHH-HHHHHTT-
T ss_pred             ccccccccEEEEcC-CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHH-HHHHHCCC
Confidence            444 3799999994 77788888888 88877777765554   23333 25655555

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=97.46  E-value=0.00054  Score=61.73  Aligned_cols=90  Identities=20%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             CCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc----c--CHHH-HH-----HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV----V--KLNE-VI-----RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~----~--~l~e-~~-----~~aDvvi~~~~~  174 (258)
                      .|.+++|.|.|. +|..+++.++..|++|+++..++++...+.+.|++.    .  +..+ +.     +..|+++.+.+.
T Consensus       165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~  244 (341)
T cd08297         165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVS  244 (341)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCCc
Confidence            689999999987 999999999999999999988887776666666532    1  1211 21     236999987665


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...++ +.++.++++++++++|..
T Consensus       245 ~~~~~-~~~~~l~~~g~~v~~g~~  267 (341)
T cd08297         245 AAAYE-QALDYLRPGGTLVCVGLP  267 (341)
T ss_pred             hHHHH-HHHHHhhcCCEEEEecCC
Confidence            55665 788899999999999855

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=97.46  E-value=0.00033  Score=62.88  Aligned_cols=88  Identities=23%  Similarity=0.334  Sum_probs=66.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c---CHHHHH---HhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V---KLNEVI---RTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~---~l~e~~---~~aDvvi~~~~~~~~i~  179 (258)
                      .|.+|+|.|. |.+|+.+++.++..|++|++.+.++++.+.+.+. ++. .   +..+.+   ...|+++.+++.. .+.
T Consensus       162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~d~~ld~~g~~-~~~  239 (334)
T PRK13771        162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGSKFSEEVKKIGGADIVIETVGTP-TLE  239 (334)
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCchhHHHHHHhcCCCcEEEEcCChH-HHH
Confidence            6899999999 8999999999999999999988888776554333 211 1   122222   2479999998764 343


Q ss_pred             HHHHhcCCCCcEEEecCCC
Q psy16115        180 REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~  198 (258)
                       +.++.+++++.++.+|..
T Consensus       240 -~~~~~l~~~G~~v~~g~~  257 (334)
T PRK13771        240 -ESLRSLNMGGKIIQIGNV  257 (334)
T ss_pred             -HHHHHHhcCCEEEEEecc
Confidence             788999999999999865

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=97.45  E-value=0.0006  Score=60.61  Aligned_cols=89  Identities=18%  Similarity=0.194  Sum_probs=69.3

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~  174 (258)
                      .|.+|+|.| .|.+|..+++.++..|++|++.++++.+.+.+.+.|....      +..+.+      +..|+++.+.+.
T Consensus       142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~  221 (324)
T cd08244         142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGG  221 (324)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCCh
Confidence            688999999 6999999999999999999999988887766666665321      122222      247999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .. . ...++.+++++.++++|..
T Consensus       222 ~~-~-~~~~~~l~~~g~~v~~g~~  243 (324)
T cd08244         222 AI-G-RAALALLAPGGRFLTYGWA  243 (324)
T ss_pred             Hh-H-HHHHHHhccCcEEEEEecC
Confidence            64 3 4788999999999999865

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.45  E-value=0.00051  Score=63.77  Aligned_cols=87  Identities=24%  Similarity=0.226  Sum_probs=64.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHh-C-CC-EEEEEeCChhhHHHHH-----hC-CC---c-ccCHHHHHHhCCeeeeccCc-
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKG-L-GC-VIYITEIDPICALQAC-----MD-GF---S-VVKLNEVIRTVDIVVTATGN-  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~-~-G~-~Vi~~d~~~~~~~~a~-----~~-g~---~-~~~l~e~~~~aDvvi~~~~~-  174 (258)
                      -++++|||+|..++..++.+.. + .. +|.+|++++.+.+...     .. +.   . ..+.++++++||+|++||.. 
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            5899999999999999998876 4 24 6999999998765311     11 22   2 24789999999999998632 


Q ss_pred             c------ccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 K------NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~------~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .      .+++.   +++|+|+.+..+|..
T Consensus       235 ~~~~s~~Pv~~~---~~lkpG~hv~~ig~~  261 (379)
T PRK06199        235 TGDPSTYPYVKR---EWVKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCcCcEecH---HHcCCCcEEecCCcc
Confidence            2      55653   367999988877764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.44  E-value=0.00016  Score=57.76  Aligned_cols=94  Identities=13%  Similarity=0.208  Sum_probs=60.8

Q ss_pred             EEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--------------C-HHHHHHhCCeeeeccCccc
Q psy16115        112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--------------K-LNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--------------~-l~e~~~~aDvvi~~~~~~~  176 (258)
                      |+|+|+|.||..+|..|+..|.+|.++.+.+ +.+...+.|....              . ..+.....|+|++|+.+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence            6899999999999999999999999999887 5544444443211              1 1134567899999974443


Q ss_pred             ---cccHHHHhcCCCCcEEEecCCC--Chhhchhhh
Q psy16115        177 ---VVTREHMDKMKNGCVVCNMGHS--NTEIDVNSL  207 (258)
Q Consensus       177 ---~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l  207 (258)
                         .+. ..-..+++++.++-.-.|  ..+.+.+.+
T Consensus        80 ~~~~l~-~l~~~~~~~t~iv~~qNG~g~~~~l~~~~  114 (151)
T PF02558_consen   80 LEQALQ-SLKPYLDPNTTIVSLQNGMGNEEVLAEYF  114 (151)
T ss_dssp             HHHHHH-HHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred             hHHHHH-HHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence               332 333345666677666555  344444444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=97.43  E-value=0.00044  Score=62.30  Aligned_cols=90  Identities=27%  Similarity=0.349  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH----H--hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI----R--TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~----~--~aDvvi~~~~~~  175 (258)
                      .|++|+|.|.|.+|..+++.++..|.+|++...++++.....+.|.+.      .++.+.+    .  ..|+++.+.+..
T Consensus       159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~  238 (337)
T cd08261         159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNP  238 (337)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCCH
Confidence            789999999999999999999999999988877777665555555421      1222222    2  369999997655


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+. +.++.+++++.++.+|..
T Consensus       239 ~~~~-~~~~~l~~~G~~i~~g~~  260 (337)
T cd08261         239 ASME-EAVELVAHGGRVVLVGLS  260 (337)
T ss_pred             HHHH-HHHHHHhcCCEEEEEcCC
Confidence            5554 678889999999988755

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.41  E-value=0.0029  Score=56.11  Aligned_cols=95  Identities=17%  Similarity=0.275  Sum_probs=74.6

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhC----CC-------EEEEEeCC-----------hhhHHHHHhCC-CcccCHHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEID-----------PICALQACMDG-FSVVKLNE  160 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~----G~-------~Vi~~d~~-----------~~~~~~a~~~g-~~~~~l~e  160 (258)
                      +..+...+++++|+|.-|..+++++...    |.       +++++|++           +.+...+.... -...++.|
T Consensus        20 g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e   99 (279)
T cd05312          20 GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLE   99 (279)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHH
Confidence            4557899999999999999999999877    87       58888875           12222232221 13358999


Q ss_pred             HHH--hCCeeeeccCccccccHHHHhcCC---CCcEEEecCCC
Q psy16115        161 VIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHS  198 (258)
Q Consensus       161 ~~~--~aDvvi~~~~~~~~i~~~~l~~~k---~g~~ivnvg~~  198 (258)
                      +++  +.|++|-+++..++++++.++.|.   +..+|.=.+.+
T Consensus       100 ~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNP  142 (279)
T cd05312         100 VVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNP  142 (279)
T ss_pred             HHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence            999  789999999888999999999998   78888888887

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.00036  Score=60.21  Aligned_cols=66  Identities=27%  Similarity=0.374  Sum_probs=49.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh--CCCcc-----cC---HHHH-HHhCCeeeeccCcc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM--DGFSV-----VK---LNEV-IRTVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~--~g~~~-----~~---l~e~-~~~aDvvi~~~~~~  175 (258)
                      ++++|+|+|.+|+.+|+.|...|..|+++|.++++......  .....     .+   ++++ +.++|+++.++++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence            47899999999999999999999999999999998766333  33321     12   2332 34689999987653

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.41  E-value=0.00077  Score=60.71  Aligned_cols=89  Identities=18%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHh-C-------CC--c-ccCHHHHHHhCCeeeeccCccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM-D-------GF--S-VVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~-~-------g~--~-~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      ++|+|||+|.+|+.+|..|...|.  +++++|+++.+...... .       +.  . .....+.++++|+|+.+++.+.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            479999999999999999999884  79999998876432111 1       11  1 1122345789999999975431


Q ss_pred             ---------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 ---------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ---------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                                     ++.  .+.++...+.+++++++-+
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP  119 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNP  119 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCh
Confidence                           111  0123445678999999865

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.39  E-value=0.00074  Score=59.37  Aligned_cols=91  Identities=19%  Similarity=0.193  Sum_probs=57.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC----EEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccc---cccH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKN---VVTR  180 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~---~i~~  180 (258)
                      ..+++|||+|.||.++++.+...|.    +++++++++.+.      +.. ..+..+.++++|+|++|+....   ++. 
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~-   75 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLL-   75 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHH-
Confidence            3589999999999999999998772    488898876542      222 3466777889999999953222   232 


Q ss_pred             HHHhcCCCCcEEEecCCCChhhchhh
Q psy16115        181 EHMDKMKNGCVVCNMGHSNTEIDVNS  206 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~~~~~~~~~  206 (258)
                      +.-..++++.++.+++.-+.+..-..
T Consensus        76 ~i~~~l~~~~iIS~~aGi~~~~l~~~  101 (260)
T PTZ00431         76 EIKPYLGSKLLISICGGLNLKTLEEM  101 (260)
T ss_pred             HHHhhccCCEEEEEeCCccHHHHHHH
Confidence            22223444444444443354443333

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=97.38  E-value=0.0008  Score=59.83  Aligned_cols=88  Identities=24%  Similarity=0.203  Sum_probs=68.4

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHH-HHH-----HhCCeeeeccCcccc
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLN-EVI-----RTVDIVVTATGNKNV  177 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~-e~~-----~~aDvvi~~~~~~~~  177 (258)
                      +.+|+|.|. |.+|..+++.++..|++|++.+.++++...+.+.|.+..    +.. +..     .+.|+++.+.+.. .
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~  225 (325)
T cd05280         147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGD-V  225 (325)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchH-H
Confidence            579999998 999999999999999999999999888777777775321    111 111     1479999987764 4


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      + .+.++.++++++++.+|..
T Consensus       226 ~-~~~~~~l~~~g~~v~~g~~  245 (325)
T cd05280         226 L-ANLLKQTKYGGVVASCGNA  245 (325)
T ss_pred             H-HHHHHhhcCCCEEEEEecC
Confidence            4 3789999999999999865

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=97.37  E-value=0.00059  Score=62.43  Aligned_cols=90  Identities=21%  Similarity=0.247  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~  174 (258)
                      .|.+|+|.|.|.+|+.+++.++..|++ |++.+.++.+...+.+.|+...      +..+.+      ...|+++.+.+.
T Consensus       182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~  261 (363)
T cd08279         182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVGR  261 (363)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcCCC
Confidence            689999999999999999999999996 8888888777666555665311      222222      236999998875


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. +.++.++++++++.+|..
T Consensus       262 ~~~~~-~~~~~l~~~G~~v~~g~~  284 (363)
T cd08279         262 AATIR-QALAMTRKGGTAVVVGMG  284 (363)
T ss_pred             hHHHH-HHHHHhhcCCeEEEEecC
Confidence            55554 778889999999998765

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.36  E-value=0.00056  Score=60.96  Aligned_cols=89  Identities=21%  Similarity=0.331  Sum_probs=66.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cC---HHHHHH---hCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VK---LNEVIR---TVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~---l~e~~~---~aDvvi~~~~~~~~i~  179 (258)
                      .|++++|.|. |.+|+.+++.++..|.+|+++.+++.+.......+... .+   +.+.+.   ..|+++.+.+... + 
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~-~-  239 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADYVIDGSKFSEDVKKLGGADVVIELVGSPT-I-  239 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCcEEEecHHHHHHHHhccCCCEEEECCChHH-H-
Confidence            6889999996 89999999999999999998888877665555555421 11   222222   4799999876554 3 


Q ss_pred             HHHHhcCCCCcEEEecCCC
Q psy16115        180 REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.++.+++++.++.+|..
T Consensus       240 ~~~~~~~~~~g~~v~~g~~  258 (332)
T cd08259         240 EESLRSLNKGGRLVLIGNV  258 (332)
T ss_pred             HHHHHHhhcCCEEEEEcCC
Confidence            3678889999999998865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.36  E-value=0.00043  Score=59.11  Aligned_cols=90  Identities=13%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHH-HHhCCCc----ccCHHHHHHhCCeeeeccCcccccc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQ-ACMDGFS----VVKLNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~-a~~~g~~----~~~l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      ++.|++|+|||.|.+|..=++.+...|++|+++..+... ... +...+..    ..+.++ +..+++|+.|+..+ -+|
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~-~ln   86 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE-ELN   86 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH-HHH
Confidence            479999999999999999999999999999998765521 211 1112211    112223 33489998888554 466


Q ss_pred             HHHHhcCCCCcEEEecCC
Q psy16115        180 REHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~  197 (258)
                      +...+..++-.+++|+.-
T Consensus        87 ~~i~~~a~~~~i~vNv~D  104 (210)
T COG1648          87 ERIAKAARERRILVNVVD  104 (210)
T ss_pred             HHHHHHHHHhCCceeccC
Confidence            677777777788888863

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.36  E-value=0.00055  Score=63.43  Aligned_cols=87  Identities=17%  Similarity=0.165  Sum_probs=60.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCC---Ccc--------cCHHHHHHhCCeeeeccCcccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDG---FSV--------VKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g---~~~--------~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      ++|+|+|+|.||+.+|..|...| .+|++.||+..++.++....   .+.        ..+.+++++.|+||.|..-.  
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~--   79 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF--   79 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence            68999999999999999999998 79999999988876665442   221        23677888999999984222  


Q ss_pred             ccHHHHh-cCCCCcEEEecCCC
Q psy16115        178 VTREHMD-KMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~-~~k~g~~ivnvg~~  198 (258)
                      ++...++ .++.|.-++|++-.
T Consensus        80 ~~~~i~ka~i~~gv~yvDts~~  101 (389)
T COG1748          80 VDLTILKACIKTGVDYVDTSYY  101 (389)
T ss_pred             hhHHHHHHHHHhCCCEEEcccC
Confidence            1112332 23555555665554

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.36  E-value=0.0024  Score=55.94  Aligned_cols=97  Identities=13%  Similarity=0.158  Sum_probs=74.2

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-----------EEEEEeCC-----------hhhHHHH--HhCCCcccCHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-----------VIYITEID-----------PICALQA--CMDGFSVVKLN  159 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-----------~Vi~~d~~-----------~~~~~~a--~~~g~~~~~l~  159 (258)
                      +..+...+++++|+|.-|..+++.+...+.           +++++|+.           +.+...+  ....-...++.
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~   99 (254)
T cd00762          20 KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLE   99 (254)
T ss_pred             CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHH
Confidence            455789999999999999999999988765           58888764           1111111  01122345899


Q ss_pred             HHHH--hCCeeeeccCccccccHHHHhcCC---CCcEEEecCCCCh
Q psy16115        160 EVIR--TVDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT  200 (258)
Q Consensus       160 e~~~--~aDvvi~~~~~~~~i~~~~l~~~k---~g~~ivnvg~~~~  200 (258)
                      |+++  +.|++|-.++..+.++++.++.|.   +..+|.=.+.+..
T Consensus       100 eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~  145 (254)
T cd00762         100 DAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTS  145 (254)
T ss_pred             HHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCC
Confidence            9999  899999999889999999999998   8888888888733

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=97.34  E-value=0.00092  Score=60.17  Aligned_cols=89  Identities=20%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCCh----hhHHHHHhCCCcc-c--------CHHHHHH-----hCCee
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP----ICALQACMDGFSV-V--------KLNEVIR-----TVDIV  168 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~----~~~~~a~~~g~~~-~--------~l~e~~~-----~aDvv  168 (258)
                      +|++|+|.|. |.+|+.+++.++..|++++++..+.    ++...+.+.|++. .        +..+.+.     ..|++
T Consensus       146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~v  225 (341)
T cd08290         146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLA  225 (341)
T ss_pred             CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCCCceEE
Confidence            7899999986 8999999999999999977765544    3344455566532 1        2222222     36999


Q ss_pred             eeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        169 VTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       169 i~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.|++... +. +.++.+++++.++.+|..
T Consensus       226 ld~~g~~~-~~-~~~~~l~~~G~~v~~g~~  253 (341)
T cd08290         226 LNCVGGKS-AT-ELARLLSPGGTMVTYGGM  253 (341)
T ss_pred             EECcCcHh-HH-HHHHHhCCCCEEEEEecc
Confidence            99988754 33 577889999999999854

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=97.32  E-value=0.00081  Score=63.94  Aligned_cols=97  Identities=12%  Similarity=0.195  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-----CCc-ccCHHHHHHh---CCeeeeccCcc----ccccHHHHhcC
Q psy16115        120 VGKGCCQSLKGLGCVIYITEIDPICALQACMD-----GFS-VVKLNEVIRT---VDIVVTATGNK----NVVTREHMDKM  186 (258)
Q Consensus       120 IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-----g~~-~~~l~e~~~~---aDvvi~~~~~~----~~i~~~~l~~~  186 (258)
                      ||..+|+.|...|.+|.+||+++.+.+...+.     ++. ..+++++++.   +|+|+++....    .+++ ..+..+
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~-~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE-QLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH-HHHhcC
Confidence            68999999999999999999999887665542     343 4578888875   89999985333    3443 567788


Q ss_pred             CCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        187 KNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       187 k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      .+|.++||.|..   +.......+..+.+...+.
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvda  113 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGM  113 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEec
Confidence            999999999976   3334455666666655443

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.30  E-value=0.0014  Score=59.55  Aligned_cols=90  Identities=16%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHH-HHh-------CCC----cc-cCHHHHHHhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQ-ACM-------DGF----SV-VKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~-a~~-------~g~----~~-~~l~e~~~~aDvvi~~~~  173 (258)
                      ..++|+|||+|.||..++..+...| .++.++|+++.+... +..       .+.    .. .+.+ .+++||+|+++.+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag   82 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAG   82 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCC
Confidence            5679999999999999999998888 689999998765321 111       111    11 2444 7799999999863


Q ss_pred             c---c------------cccc--HHHHhcCCCCcEEEecCCC
Q psy16115        174 N---K------------NVVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~---~------------~~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      .   +            .++.  .+.++...|.+++++++.+
T Consensus        83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP  124 (319)
T PTZ00117         83 VQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP  124 (319)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence            3   2            1111  0223444678889998765

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=97.30  E-value=0.0025  Score=57.01  Aligned_cols=89  Identities=21%  Similarity=0.218  Sum_probs=68.9

Q ss_pred             CCEEEEEc-CchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCccc-----CHHHHH-----HhCCeeeeccCccc
Q psy16115        109 GKQVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSVV-----KLNEVI-----RTVDIVVTATGNKN  176 (258)
Q Consensus       109 g~~V~IiG-~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~-----~~aDvvi~~~~~~~  176 (258)
                      |.+|+|.| .|.+|+.+++.++..| ++|++++.++++...+.+.|++..     +..+.+     +..|+++.+.+...
T Consensus       150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~  229 (336)
T cd08252         150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQ  229 (336)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHH
Confidence            89999999 5999999999999999 899999888877766666665311     222222     24799999877655


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+. ..++.+++++.++++|..
T Consensus       230 ~~~-~~~~~l~~~g~~v~~g~~  250 (336)
T cd08252         230 HWD-AMAELIAPQGHICLIVDP  250 (336)
T ss_pred             HHH-HHHHHhcCCCEEEEecCC
Confidence            564 788899999999999854

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.29  E-value=0.00081  Score=56.97  Aligned_cols=90  Identities=21%  Similarity=0.424  Sum_probs=59.0

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC---hhhHHHH----HhCC-----------------Ccc------
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID---PICALQA----CMDG-----------------FSV------  155 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~---~~~~~~a----~~~g-----------------~~~------  155 (258)
                      |..++|+|+|+|.+|..+|..|...|. +++++|.+   +..+...    ...|                 .+.      
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~   98 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK   98 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence            688999999999999999999999998 69999887   2211100    0000                 110      


Q ss_pred             ---cCHHHHHHhCCeeeeccCc---cccccHHHHhcCCCCcEEEecC
Q psy16115        156 ---VKLNEVIRTVDIVVTATGN---KNVVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       156 ---~~l~e~~~~aDvvi~~~~~---~~~i~~~~l~~~k~g~~ivnvg  196 (258)
                         .++++.++++|+|+.|+.+   +..+..+....++...++...|
T Consensus        99 i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g  145 (200)
T TIGR02354        99 ITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASG  145 (200)
T ss_pred             CCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEec
Confidence               1234566789999999644   3455545556666655555433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.28  E-value=0.0018  Score=58.36  Aligned_cols=99  Identities=13%  Similarity=0.032  Sum_probs=63.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------------cCHHHHHHhCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------------~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..+|+|+|+|.||..+|..|...|.+|+++.+++..  ...+.|...              .+..+....+|+|++|+..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~   82 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT   82 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence            358999999999999999999999999999887632  222333211              1122234578999999754


Q ss_pred             ccccc--HHHHhcCCCCcEEEecCCC--ChhhchhhhcC
Q psy16115        175 KNVVT--REHMDKMKNGCVVCNMGHS--NTEIDVNSLRT  209 (258)
Q Consensus       175 ~~~i~--~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~  209 (258)
                      .....  +..-..+++++.++..--|  ..+.+.+.+..
T Consensus        83 ~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~  121 (313)
T PRK06249         83 TANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPA  121 (313)
T ss_pred             CChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCC
Confidence            44321  1333346778888877555  44444444433

>KOG1197|consensus

Probab=97.28  E-value=0.0025  Score=55.70  Aligned_cols=126  Identities=23%  Similarity=0.265  Sum_probs=87.1

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEc-CchHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCG-YGEVGKGCC  125 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG-~G~IG~~~a  125 (258)
                      ..++.++|+.++.++|+-.+      +..++.    ++.....++             . -+|.+|+|-- +|-+|+.+.
T Consensus       109 ~~kv~~vpe~i~~k~aaa~l------lq~lTA----y~ll~e~y~-------------v-kpGhtVlvhaAAGGVGlll~  164 (336)
T KOG1197|consen  109 SVKVFKVPEAITLKEAAALL------LQGLTA----YMLLFEAYN-------------V-KPGHTVLVHAAAGGVGLLLC  164 (336)
T ss_pred             ceeeccCCcccCHHHHHHHH------HHHHHH----HHHHHHhcC-------------C-CCCCEEEEEeccccHHHHHH
Confidence            67888999999988876532      111111    111001111             1 2789998764 788999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHH---------hCCeeeeccCccccccHHHHhcCCCCcEEE
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIR---------TVDIVVTATGNKNVVTREHMDKMKNGCVVC  193 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~---------~aDvvi~~~~~~~~i~~~~l~~~k~g~~iv  193 (258)
                      |+++..|+.++..-.+.++.+.+++.|++..   +-++.++         +.|+++...|-.. + +..+..+|+.+.+|
T Consensus       165 Ql~ra~~a~tI~~asTaeK~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt-~-~~sl~~Lk~~G~mV  242 (336)
T KOG1197|consen  165 QLLRAVGAHTIATASTAEKHEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDT-F-AKSLAALKPMGKMV  242 (336)
T ss_pred             HHHHhcCcEEEEEeccHHHHHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccchh-h-HHHHHHhccCceEE
Confidence            9999999999998888888888999998732   3333332         4688888765442 3 25778899999999


Q ss_pred             ecCCC
Q psy16115        194 NMGHS  198 (258)
Q Consensus       194 nvg~~  198 (258)
                      ..|..
T Consensus       243 SfG~a  247 (336)
T KOG1197|consen  243 SFGNA  247 (336)
T ss_pred             Eeccc
Confidence            88876

>smart00829 PKS_ER Enoylreductase

Probab=97.28  E-value=0.0015  Score=56.29  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=67.9

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC--cc-c-----CHHHHH----H--hCCeeeecc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF--SV-V-----KLNEVI----R--TVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~--~~-~-----~l~e~~----~--~aDvvi~~~  172 (258)
                      .|++|.|.| .|.+|+.+++.++.+|++|++.++++.+...+.+.|.  +. .     +..+.+    .  ..|+++.+.
T Consensus       104 ~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  183 (288)
T smart00829      104 PGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSL  183 (288)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCC
Confidence            789999999 6999999999999999999999988887766666665  11 1     122222    1  379999887


Q ss_pred             CccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 GNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +. ..+. ..++.+++++.++.+|..
T Consensus       184 ~~-~~~~-~~~~~l~~~g~~v~~g~~  207 (288)
T smart00829      184 AG-EFLD-ASLRCLAPGGRFVEIGKR  207 (288)
T ss_pred             CH-HHHH-HHHHhccCCcEEEEEcCc
Confidence            64 4443 678889999999999865

Enoylreductase in Polyketide synthases.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=97.27  E-value=0.0016  Score=58.16  Aligned_cols=89  Identities=20%  Similarity=0.236  Sum_probs=68.1

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc----c--CHHHHH-----HhCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV----V--KLNEVI-----RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~----~--~l~e~~-----~~aDvvi~~~~~  174 (258)
                      .|++|+|.| .|.+|+.+++.++..|++|++.++++.+...+.+ .|++.    .  +..+.+     ...|+++.|.+.
T Consensus       145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~  224 (329)
T cd05288         145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGG  224 (329)
T ss_pred             CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchH
Confidence            689999999 5999999999999999999999888877766655 56531    1  122211     247999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . .+. ..++.++++++++++|..
T Consensus       225 ~-~~~-~~~~~l~~~G~~v~~g~~  246 (329)
T cd05288         225 E-ILD-AALTLLNKGGRIALCGAI  246 (329)
T ss_pred             H-HHH-HHHHhcCCCceEEEEeec
Confidence            3 444 678889999999999855

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=97.26  E-value=0.0016  Score=58.75  Aligned_cols=90  Identities=21%  Similarity=0.353  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~  174 (258)
                      .|++|+|.|.|.+|..+++.++.+|+ +|++.+.++.+.+.+.+.|++..      ++.+.+      +..|+++.|.+.
T Consensus       163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~  242 (341)
T PRK05396        163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGA  242 (341)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCC
Confidence            78999999999999999999999999 58888877777666666665421      222222      247999998876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. ..++.+++++.+++.|..
T Consensus       243 ~~~~~-~~~~~l~~~G~~v~~g~~  265 (341)
T PRK05396        243 PSAFR-QMLDNMNHGGRIAMLGIP  265 (341)
T ss_pred             HHHHH-HHHHHHhcCCEEEEEecC
Confidence            65665 678889999999999875

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.25  E-value=0.00088  Score=60.71  Aligned_cols=84  Identities=11%  Similarity=0.126  Sum_probs=57.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEEE-EeCCh-hhHHHHHhCCC-cccCHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDP-ICALQACMDGF-SVVKLNEVIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~-~d~~~-~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      -+|+|+|+|.||+.+++.+... ++++++ +|+++ .+..  ...+. ...+.++.+.+.|+|+.|+.+..-.. .....
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~-~~~~~   80 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIP-EQAPY   80 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHH-HHHHH
Confidence            5899999999999999999765 788654 78885 3221  11222 23456666778999999975443333 55566


Q ss_pred             CCCCcEEEecC
Q psy16115        186 MKNGCVVCNMG  196 (258)
Q Consensus       186 ~k~g~~ivnvg  196 (258)
                      ++.|.-+|+.-
T Consensus        81 L~aG~NVV~s~   91 (324)
T TIGR01921        81 FAQFANTVDSF   91 (324)
T ss_pred             HHcCCCEEECC
Confidence            77776777653

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK12861 malic enzyme; Reviewed

Probab=97.25  E-value=0.0015  Score=65.46  Aligned_cols=99  Identities=24%  Similarity=0.302  Sum_probs=78.9

Q ss_pred             CcCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeC------------ChhhHHHHHhCCCcccCHHHHHHhCC
Q psy16115        102 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEI------------DPICALQACMDGFSVVKLNEVIRTVD  166 (258)
Q Consensus       102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~------------~~~~~~~a~~~g~~~~~l~e~~~~aD  166 (258)
                      ..+..+...+|++.|+|.-|..+++.+...|.   +++++|+            ++.+...|...  ...++.|+++++|
T Consensus       182 ~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~ad  259 (764)
T PRK12861        182 VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGAD  259 (764)
T ss_pred             HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCC
Confidence            44667889999999999999999999999998   5899883            22233334332  3358999999999


Q ss_pred             eeeeccCccccccHHHHhcCCCCcEEEecCCCChhhc
Q psy16115        167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID  203 (258)
Q Consensus       167 vvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~  203 (258)
                      +++-+++ .++++++.++.|.+..+|.-.+.+..|+.
T Consensus       260 vliG~S~-~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~  295 (764)
T PRK12861        260 VFLGLSA-GGVLKAEMLKAMAARPLILALANPTPEIF  295 (764)
T ss_pred             EEEEcCC-CCCCCHHHHHHhccCCEEEECCCCCccCC
Confidence            9988885 89999999999999999988888744443

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.25  E-value=0.0021  Score=61.39  Aligned_cols=89  Identities=15%  Similarity=0.109  Sum_probs=62.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHHhCC-------------------Ccc-cCHHHHHHhCCe
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDG-------------------FSV-VKLNEVIRTVDI  167 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~~g-------------------~~~-~~l~e~~~~aDv  167 (258)
                      .+|+|+|+|.+|..+|..|...  |.+|+++|.++.+.......+                   ... .+.++.++.+|+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            4799999999999999999977  478999999988765432211                   111 234566788999


Q ss_pred             eeeccCcccc---------cc--------HHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKNV---------VT--------REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~~---------i~--------~~~l~~~k~g~~ivnvg~~  198 (258)
                      +|+|.+|+--         .+        .+.-+.++++.++|.-+..
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STv  129 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV  129 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence            9999765531         11        1123456889998876654

>cd05281 TDH Threonine dehydrogenase

Probab=97.23  E-value=0.002  Score=58.24  Aligned_cols=90  Identities=24%  Similarity=0.393  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-----CHHHH---HH--hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-----KLNEV---IR--TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~---~~--~aDvvi~~~~~~  175 (258)
                      +|++|+|.|.|.+|+.+++.++.+|. +|++.+.++.+...+.+.|.+. .     ++..+   ..  ..|+++.+.+..
T Consensus       163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~  242 (341)
T cd05281         163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNP  242 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCH
Confidence            78999999999999999999999999 6888877777766666666532 1     22211   11  479999998776


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+. +.++.+++++.++.+|..
T Consensus       243 ~~~~-~~~~~l~~~G~~v~~g~~  264 (341)
T cd05281         243 KAIE-QGLKALTPGGRVSILGLP  264 (341)
T ss_pred             HHHH-HHHHHhccCCEEEEEccC
Confidence            6665 778889999999998865

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.22  E-value=0.0019  Score=58.66  Aligned_cols=66  Identities=18%  Similarity=0.169  Sum_probs=48.0

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHh-------CCC----cc-cCHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACM-------DGF----SV-VKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~-------~g~----~~-~~l~e~~~~aDvvi~~~  172 (258)
                      +..++|+|||+|.+|..+|..+...|. +++++|+++.... .+..       .+.    .. .+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            355899999999999999999988885 8999999987532 1110       111    11 244 5678999999975


Q ss_pred             C
Q psy16115        173 G  173 (258)
Q Consensus       173 ~  173 (258)
                      +
T Consensus        83 g   83 (321)
T PTZ00082         83 G   83 (321)
T ss_pred             C
Confidence            3

>PRK04148 hypothetical protein; Provisional

Probab=97.22  E-value=0.0012  Score=52.26  Aligned_cols=70  Identities=16%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHHhCCeeeeccCccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~~aDvvi~~~~~~~~i  178 (258)
                      +++++++||+| -|..+|+.|...|.+|+++|.++...+.+++.+..+.      .-.+..+++|+|...-..+.+.
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~   91 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQ   91 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHH
Confidence            56899999999 8999999999999999999999998877777665421      2346677889988874444444

>PRK12862 malic enzyme; Reviewed

Probab=97.22  E-value=0.0019  Score=64.92  Aligned_cols=99  Identities=24%  Similarity=0.319  Sum_probs=79.0

Q ss_pred             CcCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeCC------------hhhHHHHHhCCCcccCHHHHHHhCC
Q psy16115        102 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID------------PICALQACMDGFSVVKLNEVIRTVD  166 (258)
Q Consensus       102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~------------~~~~~~a~~~g~~~~~l~e~~~~aD  166 (258)
                      ..+..+...++++.|+|.-|..+++++...|.   +++++|+.            +.+...+...  ...++.|+++++|
T Consensus       186 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~  263 (763)
T PRK12862        186 LVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGAD  263 (763)
T ss_pred             HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCC
Confidence            34567889999999999999999999999998   58899843            2222333332  3358999999999


Q ss_pred             eeeeccCccccccHHHHhcCCCCcEEEecCCCChhhc
Q psy16115        167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEID  203 (258)
Q Consensus       167 vvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~  203 (258)
                      +++-+++ .+.++++.++.|.+..+|.-.+.+..|..
T Consensus       264 v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~  299 (763)
T PRK12862        264 VFLGLSA-AGVLKPEMVKKMAPRPLIFALANPTPEIL  299 (763)
T ss_pred             EEEEcCC-CCCCCHHHHHHhccCCEEEeCCCCcccCC
Confidence            9999887 89999999999999999988888744443

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.21  E-value=0.002  Score=58.38  Aligned_cols=90  Identities=19%  Similarity=0.161  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC--CC------c-ccCHHHHHHhCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD--GF------S-VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~--g~------~-~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      .+++|+|||+|.||..+|..+...|.  ++.++|++..++.. +.+.  ..      . ..+..+.+++||+|+.+.|.+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~   84 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP   84 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence            67899999999999999999998886  69999998765421 1111  11      1 112335588999999985432


Q ss_pred             c---------------cccHHHH---hcCCCCcEEEecCCC
Q psy16115        176 N---------------VVTREHM---DKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~---------------~i~~~~l---~~~k~g~~ivnvg~~  198 (258)
                      .               ++. +..   ....+.+++++++-+
T Consensus        85 ~k~g~~R~dll~~N~~i~~-~i~~~i~~~~~~~~vivvsNP  124 (315)
T PRK00066         85 QKPGETRLDLVEKNLKIFK-SIVGEVMASGFDGIFLVASNP  124 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHH-HHHHHHHHhCCCeEEEEccCc
Confidence            1               121 222   223478899999865

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=97.21  E-value=0.0026  Score=55.67  Aligned_cols=89  Identities=24%  Similarity=0.266  Sum_probs=69.0

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH----H--hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI----R--TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~--~aDvvi~~~~~  174 (258)
                      +|++|+|.| .|.+|+.+++.++..|++|++.+.++.+...+.+.|++..      +..+.+    .  ..|+++.|.+.
T Consensus       136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~  215 (320)
T cd05286         136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGK  215 (320)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCc
Confidence            789999999 6999999999999999999999888887776666665321      121212    1  37999998765


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . .+. ..++.+++++.++.+|..
T Consensus       216 ~-~~~-~~~~~l~~~g~~v~~g~~  237 (320)
T cd05286         216 D-TFE-GSLDSLRPRGTLVSFGNA  237 (320)
T ss_pred             H-hHH-HHHHhhccCcEEEEEecC
Confidence            3 444 788999999999999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.21  E-value=0.0019  Score=58.45  Aligned_cols=87  Identities=10%  Similarity=0.173  Sum_probs=58.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--CCc-------------ccCHHHHH-HhCCeeeeccCc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--GFS-------------VVKLNEVI-RTVDIVVTATGN  174 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--g~~-------------~~~l~e~~-~~aDvvi~~~~~  174 (258)
                      +|+|+|+|.+|..++..|...|.+|.++++++...+...+.  +..             ..++++.+ ..+|++++++..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks   81 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT   81 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence            59999999999999999999999999999987654332221  111             12455555 478999999644


Q ss_pred             cc---cccHHHHh-cCCCCcEEEecCCC
Q psy16115        175 KN---VVTREHMD-KMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~---~i~~~~l~-~~k~g~~ivnvg~~  198 (258)
                      ..   ++. +.-. .++++..++....|
T Consensus        82 ~~~~~~l~-~l~~~~l~~~~~vv~~~nG  108 (326)
T PRK14620         82 QQLRTICQ-QLQDCHLKKNTPILICSKG  108 (326)
T ss_pred             HHHHHHHH-HHHHhcCCCCCEEEEEEcC
Confidence            43   332 3333 45666666666555

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.20  E-value=0.0028  Score=56.69  Aligned_cols=105  Identities=19%  Similarity=0.164  Sum_probs=65.7

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChh---hHHHH-HhCC------CcccCHH------HHHHhCC
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI---CALQA-CMDG------FSVVKLN------EVIRTVD  166 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~---~~~~a-~~~g------~~~~~l~------e~~~~aD  166 (258)
                      +.++.|++++|+|+|-.+++++..+...|+ +|++++|++.   +.+.. ...+      ....+++      +.+.++|
T Consensus       119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aD  198 (288)
T PRK12749        119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD  198 (288)
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCC
Confidence            445789999999999999999999988997 6999999853   33221 1111      1122332      2345789


Q ss_pred             eeeecc--CccccccH---HHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115        167 IVVTAT--GNKNVVTR---EHMDKMKNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       167 vvi~~~--~~~~~i~~---~~l~~~k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      +||.|+  |.....+.   ...+.++++.++.|+--. .+..++.+-+
T Consensus       199 ivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~  246 (288)
T PRK12749        199 ILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQ  246 (288)
T ss_pred             EEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccCHHHHHHH
Confidence            999986  22111110   112446788889888655 3344444433

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.18  E-value=0.0012  Score=55.88  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      +.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            689999999999999999999999998 79999877

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.17  E-value=0.0025  Score=48.45  Aligned_cols=83  Identities=22%  Similarity=0.352  Sum_probs=55.9

Q ss_pred             EEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHHH----HHhCCeeeeccCccc--cccH
Q psy16115        112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNEV----IRTVDIVVTATGNKN--VVTR  180 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~----~~~aDvvi~~~~~~~--~i~~  180 (258)
                      |.|+|+|.+|+.+++.|+..+.+|+++|.++.+.+.+.+.|+...     +.+.+    ++++|.++.+++...  +.-.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~   80 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA   80 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence            679999999999999999977799999999998888888876532     22222    346788888765442  1112


Q ss_pred             HHHhcCCCCcEEEe
Q psy16115        181 EHMDKMKNGCVVCN  194 (258)
Q Consensus       181 ~~l~~~k~g~~ivn  194 (258)
                      ..++.+-+...++-
T Consensus        81 ~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   81 LLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHHTTTSEEEE
T ss_pred             HHHHHHCCCCeEEE
Confidence            33444445445543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.17  E-value=0.0012  Score=61.98  Aligned_cols=67  Identities=22%  Similarity=0.194  Sum_probs=46.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      .++|+|+|.|.+|+++|+.|+..|++|+++|+++............ ....+....++|+++.+++.+
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~   70 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK   70 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence            4789999999999999999999999999999876543211000000 112333446789999986554

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=97.15  E-value=0.0029  Score=56.14  Aligned_cols=89  Identities=19%  Similarity=0.140  Sum_probs=68.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHH----HH--HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNE----VI--RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e----~~--~~aDvvi~~~~~  174 (258)
                      .|.+|+|.|. |.+|+.+++.++..|+++++...++.+...+.+.|++..      +..+    ..  +..|+++.|.+.
T Consensus       138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~  217 (323)
T cd05282         138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGG  217 (323)
T ss_pred             CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCC
Confidence            7899999997 789999999999999999888877777666666665321      1111    11  247999999887


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ... . ..++.++++++++++|..
T Consensus       218 ~~~-~-~~~~~l~~~g~~v~~g~~  239 (323)
T cd05282         218 ESA-T-RLARSLRPGGTLVNYGLL  239 (323)
T ss_pred             HHH-H-HHHHhhCCCCEEEEEccC
Confidence            653 2 668889999999998865

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.14  E-value=0.0037  Score=55.92  Aligned_cols=104  Identities=22%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCCh---hhHHHHHh-C---C----CcccC------HHHHHHhCC
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDP---ICALQACM-D---G----FSVVK------LNEVIRTVD  166 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~---~~~~~a~~-~---g----~~~~~------l~e~~~~aD  166 (258)
                      ..+.+++++|+|.|-+|++++..|...|++ |++++|++   ++.+...+ .   +    ....+      +++.+..+|
T Consensus       122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence            346799999999999999999999999996 99999986   44332111 1   1    11112      233455789


Q ss_pred             eeeecc--CccccccH---HHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115        167 IVVTAT--GNKNVVTR---EHMDKMKNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       167 vvi~~~--~~~~~i~~---~~l~~~k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      ++|.||  |...-.+.   .....++++.++.|+--. .+..++..-+
T Consensus       202 ilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~  249 (289)
T PRK12548        202 ILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAE  249 (289)
T ss_pred             EEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHH
Confidence            999986  22111110   013457888899998765 3344444333

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.14  E-value=0.0016  Score=59.62  Aligned_cols=87  Identities=17%  Similarity=0.137  Sum_probs=60.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---------CCc-------ccCHHHHHHhCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---------GFS-------VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---------g~~-------~~~l~e~~~~aDvvi~~~~  173 (258)
                      .+|+|+|+|.+|..+|..|...| .++.+.++++..+...+.         +..       ..++.+.++.+|+|++++.
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            57999999999999999999988 677787877665433322         111       1256677889999999964


Q ss_pred             cc---ccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NK---NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~---~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.   .++. +.-..++++..++.+.-|
T Consensus        87 s~~~~~vl~-~i~~~l~~~~~vIsl~kG  113 (341)
T PRK12439         87 SHGFRGVLT-ELAKELRPWVPVVSLVKG  113 (341)
T ss_pred             HHHHHHHHH-HHHhhcCCCCEEEEEEeC
Confidence            33   2332 333456777777777666

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.13  E-value=0.0011  Score=57.13  Aligned_cols=89  Identities=13%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-H-HHhCCCccc--C-HHHHHHhCCeeeeccCccccccHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-Q-ACMDGFSVV--K-LNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~-a~~~g~~~~--~-l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      ++|++|+|||.|.+|..=++.|..+|++|+++.+...... . +....++..  + -.+.+.++++|+.||..+ -+|..
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~vN~~  101 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-KLNNK  101 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-HHHHH
Confidence            5799999999999999999999999999999866543221 1 211122211  1 123467889999998544 55555


Q ss_pred             HHhcCCCCcEEEecC
Q psy16115        182 HMDKMKNGCVVCNMG  196 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg  196 (258)
                      ..+..+....++|+.
T Consensus       102 I~~~a~~~~~lvn~v  116 (223)
T PRK05562        102 IRKHCDRLYKLYIDC  116 (223)
T ss_pred             HHHHHHHcCCeEEEc
Confidence            555555545666654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.11  E-value=0.002  Score=60.78  Aligned_cols=67  Identities=28%  Similarity=0.386  Sum_probs=49.4

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HH----HHHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-AL----QACMDGFSVV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~----~a~~~g~~~~---~l~e~~~~aDvvi~~~~  173 (258)
                      +.+++|+|+|.|.+|+.+|+.|...|++|+++|++... ..    ...+.|....   ..++.....|+|+.+++
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g   77 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG   77 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence            57899999999999999999999999999999997532 21    1122344321   23345567999999764

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=97.10  E-value=0.0033  Score=56.18  Aligned_cols=89  Identities=22%  Similarity=0.230  Sum_probs=67.9

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH-----HhCCeeeeccCcc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI-----RTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~-----~~aDvvi~~~~~~  175 (258)
                      +|++++|.| .|.+|+.+++.++..|++|++.++++.+...+.+.|.+.      .+..+.+     +..|+++.+.+. 
T Consensus       139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~-  217 (329)
T cd08250         139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGG-  217 (329)
T ss_pred             CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcH-
Confidence            789999999 589999999999999999999888877766666666521      1222222     247999998875 


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+ .+.++.+++++.++++|..
T Consensus       218 ~~~-~~~~~~l~~~g~~v~~g~~  239 (329)
T cd08250         218 EMF-DTCVDNLALKGRLIVIGFI  239 (329)
T ss_pred             HHH-HHHHHHhccCCeEEEEecc
Confidence            344 3788899999999999864

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.10  E-value=0.0015  Score=62.12  Aligned_cols=67  Identities=15%  Similarity=0.154  Sum_probs=49.9

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-----HHHHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFSVV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-----~~a~~~g~~~~---~l~e~~~~aDvvi~~~~  173 (258)
                      +.+++|+|+|+|..|+++|+.|+..|++|.++|.++...     ......|+...   ...+.+.++|+|+..++
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spg   86 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPS   86 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCC
Confidence            478999999999999999999999999999999765311     12334565432   22455678999988753

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.09  E-value=0.0027  Score=58.50  Aligned_cols=107  Identities=10%  Similarity=0.181  Sum_probs=79.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC------cccCHHHHHH---hCCeeeec--cCc--cc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF------SVVKLNEVIR---TVDIVVTA--TGN--KN  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~------~~~~l~e~~~---~aDvvi~~--~~~--~~  176 (258)
                      ..+|+||+|-||+.+|......|.+|.+|+|++++.++..+...      ...+++|.+.   .---|++.  +|+  ..
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            57999999999999999999999999999999988665433321      1346777654   33444443  455  45


Q ss_pred             cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      .|+ +.+..|.+|-++||-|..   |..-..+.|..+.|...+.
T Consensus        84 ~I~-~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~  126 (473)
T COG0362          84 VIE-QLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGM  126 (473)
T ss_pred             HHH-HHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEec
Confidence            664 777889999999999987   5555667888887766554

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=97.09  E-value=0.0026  Score=59.08  Aligned_cols=105  Identities=16%  Similarity=0.269  Sum_probs=77.1

Q ss_pred             cCcCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeCCh----hh---------HHHHH-hCCCcccCHHHHHH
Q psy16115        101 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDP----IC---------ALQAC-MDGFSVVKLNEVIR  163 (258)
Q Consensus       101 ~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~~----~~---------~~~a~-~~g~~~~~l~e~~~  163 (258)
                      +..+..++..+|++.|+|.-|..+++.+++.|+   +|+++|+.-    .+         ...+. ..+....  ++.+.
T Consensus       191 k~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~--~~~~~  268 (432)
T COG0281         191 KLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL--DLALA  268 (432)
T ss_pred             HHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc--ccccc
Confidence            345677899999999999999999999999998   499998741    11         11111 1111111  44677


Q ss_pred             hCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhc
Q psy16115        164 TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR  208 (258)
Q Consensus       164 ~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~  208 (258)
                      ++|+++-+++. +.+.++.++.|.++.++.-.+.+..|+..+.+.
T Consensus       269 ~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~  312 (432)
T COG0281         269 GADVLIGVSGV-GAFTEEMVKEMAKHPIIFALANPTPEITPEDAK  312 (432)
T ss_pred             CCCEEEEcCCC-CCcCHHHHHHhccCCEEeecCCCCccCCHHHHh
Confidence            89999999877 999999999999998888888776666555443

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.09  E-value=0.0023  Score=57.44  Aligned_cols=63  Identities=25%  Similarity=0.272  Sum_probs=45.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHh--C-----CC--c--c-cCHHHHHHhCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACM--D-----GF--S--V-VKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~--~-----g~--~--~-~~l~e~~~~aDvvi~~~~  173 (258)
                      ++|+|||+|.+|..+|..+...|. +|+++|++++++.. +..  .     +.  .  . .+. +.+++||+|+++.+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            589999999999999999988764 89999998765432 111  1     11  1  1 234 45789999999854

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=97.09  E-value=0.0031  Score=56.34  Aligned_cols=89  Identities=21%  Similarity=0.256  Sum_probs=68.2

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      .|.+|+|.| .|.+|+.+++.++..|++|++++.++.+...+.+.|.+.      .+..+.+.      ..|+++.|.+.
T Consensus       140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~  219 (327)
T PRK10754        140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGK  219 (327)
T ss_pred             CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcH
Confidence            789999996 789999999999999999999888887776666666531      12222222      36999998876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . .+. +.++.+++++.++.+|..
T Consensus       220 ~-~~~-~~~~~l~~~g~~v~~g~~  241 (327)
T PRK10754        220 D-TWE-ASLDCLQRRGLMVSFGNA  241 (327)
T ss_pred             H-HHH-HHHHHhccCCEEEEEccC
Confidence            3 343 678899999999999855

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=97.08  E-value=0.0014  Score=52.86  Aligned_cols=102  Identities=18%  Similarity=0.233  Sum_probs=67.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec--cCccccccHHHHh
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA--TGNKNVVTREHMD  184 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~--~~~~~~i~~~~l~  184 (258)
                      .|++|++||+ .+    +++.++..+.++.++|+++..... ...+......++++.+||+++.+  +=..+.++ +.++
T Consensus        10 ~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~-~iL~   83 (147)
T PF04016_consen   10 PGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIGE-EPGDVPDEDAEEILPWADVVIITGSTLVNGTID-DILE   83 (147)
T ss_dssp             TTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG--S-SCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHH-HHHH
T ss_pred             CCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCCC-CCCcCCHHHHHHHHccCCEEEEEeeeeecCCHH-HHHH
Confidence            8999999994 44    577777788899999999965321 11123345678889999999886  33446775 7888


Q ss_pred             cCCCCcEEEecCCCChhhchhhhcCCCceeee
Q psy16115        185 KMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEK  216 (258)
Q Consensus       185 ~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~  216 (258)
                      ..+++..++-+|.. .....+.+....++..+
T Consensus        84 ~~~~~~~vil~GpS-~~~~P~~l~~~Gv~~v~  114 (147)
T PF04016_consen   84 LARNAREVILYGPS-APLHPEALFDYGVTYVG  114 (147)
T ss_dssp             HTTTSSEEEEESCC-GGS-GGGGCCTT-SEEE
T ss_pred             hCccCCeEEEEecC-chhhHHHHHhCCCCEEE
Confidence            88989999998865 22223355555565443

; PDB: 3L5O_B 3NPG_A.

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=97.08  E-value=0.003  Score=63.30  Aligned_cols=100  Identities=20%  Similarity=0.283  Sum_probs=78.3

Q ss_pred             CcCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeCC------------hhhHHHHHhCCCcccCHHHHHHhCC
Q psy16115        102 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID------------PICALQACMDGFSVVKLNEVIRTVD  166 (258)
Q Consensus       102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~------------~~~~~~a~~~g~~~~~l~e~~~~aD  166 (258)
                      ..+..+...++++.|+|.-|..+++++...|.   +++++|+.            +.+...+..  -...++.++++++|
T Consensus       178 ~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~--~~~~~l~~~i~~~~  255 (752)
T PRK07232        178 LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVD--TDARTLAEAIEGAD  255 (752)
T ss_pred             HhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhcc--CCCCCHHHHHcCCC
Confidence            44667889999999999999999999999998   58888853            112222222  22348999999999


Q ss_pred             eeeeccCccccccHHHHhcCCCCcEEEecCCCChhhch
Q psy16115        167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDV  204 (258)
Q Consensus       167 vvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~  204 (258)
                      +++-.++ .+.++++.++.|.+..++.-.+.+..|...
T Consensus       256 v~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p  292 (752)
T PRK07232        256 VFLGLSA-AGVLTPEMVKSMADNPIIFALANPDPEITP  292 (752)
T ss_pred             EEEEcCC-CCCCCHHHHHHhccCCEEEecCCCCccCCH
Confidence            9998876 899999999999999999888887545433

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.07  E-value=0.0015  Score=57.42  Aligned_cols=62  Identities=15%  Similarity=0.215  Sum_probs=45.5

Q ss_pred             EEEEEcC-chHHHHHHHHHHhC-CCEE-EEEeCChhhHHHHHhCCC-cccCHHHHHHhCCeeeecc
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGL-GCVI-YITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~-G~~V-i~~d~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~~  172 (258)
                      +|+|+|+ |.||+.+++.+... ++++ .++|+++.+.......++ .+.+++++++.+|+|+.++
T Consensus         3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFT   68 (257)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECC
Confidence            7999998 99999999998864 6774 458888765432222233 2357888888899999876

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.07  E-value=0.0024  Score=58.46  Aligned_cols=87  Identities=22%  Similarity=0.286  Sum_probs=54.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhC-CCEEEE-EeCChhhHHH-HHhCCCc------------------c-cCHHHHHHhCCee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEIDPICALQ-ACMDGFS------------------V-VKLNEVIRTVDIV  168 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~-G~~Vi~-~d~~~~~~~~-a~~~g~~------------------~-~~l~e~~~~aDvv  168 (258)
                      +|+|+|+|.||+.+++.+... ++++++ +|+++..... +...|+.                  . .++++++.++|+|
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVV   82 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIV   82 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEE
Confidence            799999999999999988764 577555 5655533321 2222211                  1 2466777789999


Q ss_pred             eeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        169 VTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       169 i~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.|++...... ..-...+.|..+|.-|..
T Consensus        83 IdaT~~~~~~e-~a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         83 VDATPGGVGAK-NKELYEKAGVKAIFQGGE  111 (341)
T ss_pred             EECCCchhhHH-HHHHHHHCCCEEEEcCCC
Confidence            99986553332 222334556666666553

>PRK10637 cysG siroheme synthase; Provisional

Probab=97.07  E-value=0.0014  Score=62.32  Aligned_cols=92  Identities=16%  Similarity=0.266  Sum_probs=64.0

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-HHHhCC-Cccc---CHHHHHHhCCeeeeccCccccccH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDG-FSVV---KLNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~g-~~~~---~l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      ++.|++|+|||.|.++..=++.|..+|++|+++.+.-.... .....| +...   -..+.++++++|+.|+..+ -+|.
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~-~~n~   87 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD-AVNQ   87 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH-HHhH
Confidence            57999999999999999999999999999999855432211 111222 2211   1235567899999988555 4665


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      +..+..+...+++|+.-.
T Consensus        88 ~i~~~a~~~~~lvN~~d~  105 (457)
T PRK10637         88 RVSEAAEARRIFCNVVDA  105 (457)
T ss_pred             HHHHHHHHcCcEEEECCC
Confidence            666667777788887744

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.07  E-value=0.0025  Score=63.08  Aligned_cols=68  Identities=19%  Similarity=0.332  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh---------------------hHHHHHhCCCcc---------cC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI---------------------CALQACMDGFSV---------VK  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~---------------------~~~~a~~~g~~~---------~~  157 (258)
                      .|++|+|||.|+.|+..|..|+..|.+|+++++.+.                     +.......|++.         .+
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~  388 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT  388 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence            589999999999999999999999999999987753                     222334455432         24


Q ss_pred             HHHHHHhCCeeeeccCcc
Q psy16115        158 LNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       158 l~e~~~~aDvvi~~~~~~  175 (258)
                      ++++....|.|++++|..
T Consensus       389 ~~~l~~~~DaV~latGa~  406 (639)
T PRK12809        389 FSDLTSEYDAVFIGVGTY  406 (639)
T ss_pred             HHHHHhcCCEEEEeCCCC
Confidence            556666799999997654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.05  E-value=0.0024  Score=57.41  Aligned_cols=89  Identities=18%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhC-CCE-EEEEeCChhh--HHHHHhCCCcc--cCHHHHHH-----hCCeeeeccCcccc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGL-GCV-IYITEIDPIC--ALQACMDGFSV--VKLNEVIR-----TVDIVVTATGNKNV  177 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~-G~~-Vi~~d~~~~~--~~~a~~~g~~~--~~l~e~~~-----~aDvvi~~~~~~~~  177 (258)
                      .-+++|||.|.||...+..+... +.+ +.++|+++++  +..+.+.|+..  .+.++++.     +.|+|+.++++..-
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            46899999999999866666644 567 4568888754  34566777753  47888885     47889999865533


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .. ...+..+.|..+++-...
T Consensus        84 ~e-~a~~a~eaGk~VID~sPA  103 (302)
T PRK08300         84 VR-HAAKLREAGIRAIDLTPA  103 (302)
T ss_pred             HH-HHHHHHHcCCeEEECCcc
Confidence            22 334445778888876643

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.04  E-value=0.0025  Score=63.21  Aligned_cols=68  Identities=21%  Similarity=0.353  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh---------------------hHHHHHhCCCcc---------cC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI---------------------CALQACMDGFSV---------VK  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~---------------------~~~~a~~~g~~~---------~~  157 (258)
                      .|++|+|||.|+.|+..|..|+..|.+|+++|+.+.                     +...+.+.|++.         .+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~  405 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDIS  405 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCC
Confidence            689999999999999999999999999999987543                     122234456542         23


Q ss_pred             HHHHHHhCCeeeeccCcc
Q psy16115        158 LNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       158 l~e~~~~aDvvi~~~~~~  175 (258)
                      ++++..+.|.|++++|..
T Consensus       406 ~~~~~~~~DavilAtGa~  423 (654)
T PRK12769        406 LESLLEDYDAVFVGVGTY  423 (654)
T ss_pred             HHHHHhcCCEEEEeCCCC
Confidence            455566799999987653

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=97.04  E-value=0.0038  Score=56.42  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=67.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      .|++++|.|. |.+|+.+++.++.+|++|+... ++++...+.+.|++.      .++.+.+.     ..|+++.+.+..
T Consensus       154 ~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~  232 (339)
T cd08249         154 KGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTP  232 (339)
T ss_pred             CCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccc
Confidence            7899999997 8899999999999999988766 556666666667531      12222222     369999988775


Q ss_pred             ccccHHHHhcCCC--CcEEEecCCC
Q psy16115        176 NVVTREHMDKMKN--GCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~--g~~ivnvg~~  198 (258)
                      ..+. +.++.+++  ++.++.+|..
T Consensus       233 ~~~~-~~~~~l~~~~~g~~v~~g~~  256 (339)
T cd08249         233 ESAQ-LCAEALGRSGGGKLVSLLPV  256 (339)
T ss_pred             hHHH-HHHHHHhccCCCEEEEecCC
Confidence            5664 78899999  9999999865

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.04  E-value=0.0044  Score=52.55  Aligned_cols=45  Identities=16%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMD  151 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~  151 (258)
                      +.|.||+|-|.|. ||+.+|+.+...|-+|+++.|+..++.+++..
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~   48 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE   48 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc
Confidence            4799999999888 99999999999999999999999998877654

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.02  E-value=0.0023  Score=59.26  Aligned_cols=83  Identities=19%  Similarity=0.295  Sum_probs=53.1

Q ss_pred             EEEEcCchHHHHHHHHHHhCC-C-EEEEEeCChhhHHHHHh--C--CCc-----cc---CHHHHHHhCCeeeeccCcccc
Q psy16115        112 VVLCGYGEVGKGCCQSLKGLG-C-VIYITEIDPICALQACM--D--GFS-----VV---KLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~G-~-~Vi~~d~~~~~~~~a~~--~--g~~-----~~---~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      |+|+|+|.+|+.+++.|...+ . +|++.|++..++....+  .  .+.     ..   ++.++++++|+|+.|.+..  
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~--   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF--   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence            689999999999999999886 4 79999999998665433  1  221     11   3667788999999986543  


Q ss_pred             ccHHHHhc-CCCCcEEEecC
Q psy16115        178 VTREHMDK-MKNGCVVCNMG  196 (258)
Q Consensus       178 i~~~~l~~-~k~g~~ivnvg  196 (258)
                      .+...++. ++.|.-.+|++
T Consensus        79 ~~~~v~~~~i~~g~~yvD~~   98 (386)
T PF03435_consen   79 FGEPVARACIEAGVHYVDTS   98 (386)
T ss_dssp             GHHHHHHHHHHHT-EEEESS
T ss_pred             hhHHHHHHHHHhCCCeeccc
Confidence            22222221 34455555543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.02  E-value=0.0019  Score=61.26  Aligned_cols=66  Identities=21%  Similarity=0.327  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCH-HHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL-NEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l-~e~~~~aDvvi~~~  172 (258)
                      +.|++|.|+|+|..|+++|+.|+..|++|.++|..+.......+.|+..... .+.+.++|+|+..+
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp   73 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSP   73 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECC
Confidence            5789999999999999999999999999999997654333333456553221 23356789998765

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.0017  Score=59.42  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=46.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC---c---ccCHHHHHHhCCeeee
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF---S---VVKLNEVIRTVDIVVT  170 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~---~---~~~l~e~~~~aDvvi~  170 (258)
                      +++|||+|.|..|++++..++.+|.++++.|.++...........   .   ...+.++.+.||+|..
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            479999999999999999999999999999988765432211111   1   1246777788888754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.02  E-value=0.0031  Score=60.16  Aligned_cols=69  Identities=22%  Similarity=0.378  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh---------------------hHHHHHhCCCcc---------cC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI---------------------CALQACMDGFSV---------VK  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~---------------------~~~~a~~~g~~~---------~~  157 (258)
                      .+++|+|||.|++|...|..|+..|.+|++++..+.                     ......+.|++.         ..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~  219 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS  219 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence            689999999999999999999999999999987642                     123344556542         13


Q ss_pred             HHHHHHhCCeeeeccCccc
Q psy16115        158 LNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       158 l~e~~~~aDvvi~~~~~~~  176 (258)
                      +++.....|.|++++|...
T Consensus       220 ~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       220 LDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             HHHHHhcCCEEEEEeCCCC
Confidence            4455557999999987653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.01  E-value=0.0051  Score=59.60  Aligned_cols=112  Identities=17%  Similarity=0.130  Sum_probs=69.5

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcccCHHHH---H-HhCCeeeecc--Ccccc
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVVKLNEV---I-RTVDIVVTAT--GNKNV  177 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~~l~e~---~-~~aDvvi~~~--~~~~~  177 (258)
                      .++.+++++|+|.|.+|++++..|...|++|++++++.++.+... ..+.....+++.   . ..+|+++.++  |...-
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~  454 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPN  454 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCC
Confidence            356899999999999999999999999999999999887654432 223222333332   2 2468887764  22111


Q ss_pred             ccH--HHHhcCCCCcEEEecCCC-Chhhchhhh-cCCCceeee
Q psy16115        178 VTR--EHMDKMKNGCVVCNMGHS-NTEIDVNSL-RTPDLTWEK  216 (258)
Q Consensus       178 i~~--~~l~~~k~g~~ivnvg~~-~~~~~~~~l-~~~~i~~~~  216 (258)
                      .+.  -....++++.+++|+--. ....++... +.|.-.+.|
T Consensus       455 ~~~~pl~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~~G  497 (529)
T PLN02520        455 VDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGAIIVSG  497 (529)
T ss_pred             CCCCcccHhhCCCCCEEEEeccCCCcCHHHHHHHHCCCeEeCc
Confidence            110  012457788899998765 333444433 344333333

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=97.01  E-value=0.0014  Score=52.43  Aligned_cols=64  Identities=27%  Similarity=0.235  Sum_probs=46.2

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------CCc---ccCHHHHHHhCCeeeeccCc
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------GFS---VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g~~---~~~l~e~~~~aDvvi~~~~~  174 (258)
                      +|+|||+ |.+|..++..|...+.  ++..+|+++.+.+. +.+.       ...   .....+.+++||+|+.+.|.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV   79 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence            7999999 9999999999988774  69999999765432 1111       111   12456678899999998543

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=97.00  E-value=0.0032  Score=55.14  Aligned_cols=96  Identities=17%  Similarity=0.262  Sum_probs=70.3

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhC----CC------E-EEEEeCC-----------hhhHHHHHhCCCc--ccCHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC------V-IYITEID-----------PICALQACMDGFS--VVKLN  159 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~----G~------~-Vi~~d~~-----------~~~~~~a~~~g~~--~~~l~  159 (258)
                      +..|+..+++++|+|.-|..+++++...    |.      + ++++|++           +.+...+....-.  ..++.
T Consensus        20 g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~   99 (255)
T PF03949_consen   20 GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLL   99 (255)
T ss_dssp             TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHH
T ss_pred             CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCHH
Confidence            4557899999999999999999999887    88      3 8999875           1122222222111  24899


Q ss_pred             HHHHhC--CeeeeccCccccccHHHHhcCCC---CcEEEecCCCC
Q psy16115        160 EVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHSN  199 (258)
Q Consensus       160 e~~~~a--Dvvi~~~~~~~~i~~~~l~~~k~---g~~ivnvg~~~  199 (258)
                      |+++++  |++|-+++..+.++++.++.|.+   ..+|.=.+.+.
T Consensus       100 eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt  144 (255)
T PF03949_consen  100 EAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPT  144 (255)
T ss_dssp             HHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSC
T ss_pred             HHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCC
Confidence            999988  99999999999999999999976   78888888873

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.99  E-value=0.0026  Score=60.76  Aligned_cols=66  Identities=20%  Similarity=0.382  Sum_probs=49.9

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-HHhCCCccc---CHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVV---KLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~~~g~~~~---~l~e~~~~aDvvi~~~  172 (258)
                      +.+++|+|+|+|..|+++++.|...|++|+++|+++....+ ..+.|+...   ...+.+.++|+||..+
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp   82 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSP   82 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCC
Confidence            57899999999999999999999999999999987654322 233465442   2234456789998864

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.98  E-value=0.0022  Score=58.66  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=33.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +.+++|+|+|+|.+|..+|+.|...|. +++++|.+.
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            688999999999999999999999998 799998864

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=96.98  E-value=0.0037  Score=57.31  Aligned_cols=80  Identities=14%  Similarity=0.158  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhCCCEEEEEeCChhh-----HHHHHhCCCcc-cCHHHHHHhCCeeeeccCccc----cccHHHHhcCCCCc
Q psy16115        121 GKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVTREHMDKMKNGC  190 (258)
Q Consensus       121 G~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~----~i~~~~l~~~k~g~  190 (258)
                      |..+|..|...|.+|+++|+++.+     .......|+.. .+..+.++++|+||+|.....    ++ ......++++.
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            788899999999999999998863     23344567654 467788899999999964333    33 24556778999


Q ss_pred             EEEecCCCChh
Q psy16115        191 VVCNMGHSNTE  201 (258)
Q Consensus       191 ~ivnvg~~~~~  201 (258)
                      +++|++..+..
T Consensus       111 IVId~ST~~~~  121 (342)
T PRK12557        111 VICNTCTVSPV  121 (342)
T ss_pred             EEEEecCCCHH
Confidence            99999987433

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.97  E-value=0.0012  Score=51.49  Aligned_cols=82  Identities=20%  Similarity=0.368  Sum_probs=50.1

Q ss_pred             EEEEEcC-chHHHHHHHHHHh-CCCE-EEEEeCChhhHH-----HHH---hCCCc-ccCHHHHHHhCCeeeeccCccccc
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKG-LGCV-IYITEIDPICAL-----QAC---MDGFS-VVKLNEVIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~-~G~~-Vi~~d~~~~~~~-----~a~---~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i  178 (258)
                      +|+|+|+ |+||+.+++.+.. -|++ +-++|+.+....     ...   ..++. ..++++++..+|+++..+ ++..+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~   80 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV   80 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence            6999999 9999999999998 5777 555788762110     000   11222 346888898999999998 44444


Q ss_pred             cHHHHhc-CCCCcEEEe
Q psy16115        179 TREHMDK-MKNGCVVCN  194 (258)
Q Consensus       179 ~~~~l~~-~k~g~~ivn  194 (258)
                      . +.++. ++.|.-+|-
T Consensus        81 ~-~~~~~~~~~g~~~Vi   96 (124)
T PF01113_consen   81 Y-DNLEYALKHGVPLVI   96 (124)
T ss_dssp             H-HHHHHHHHHT-EEEE
T ss_pred             H-HHHHHHHhCCCCEEE
Confidence            3 33332 344444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.97  E-value=0.0027  Score=60.49  Aligned_cols=69  Identities=23%  Similarity=0.229  Sum_probs=48.8

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-----HHHHhCCCccc--CHHHHHHhCCeeeeccCc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-----LQACMDGFSVV--KLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-----~~a~~~g~~~~--~l~e~~~~aDvvi~~~~~  174 (258)
                      .+.+++|+|+|.|.+|+.+|+.|+..|.+|+++|.++...     ....+.|++..  ...+....+|+|+.++|.
T Consensus        13 ~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi   88 (480)
T PRK01438         13 DWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGW   88 (480)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCc
Confidence            4578999999999999999999999999999999664311     12233465432  111133468999998643

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0061  Score=54.36  Aligned_cols=110  Identities=17%  Similarity=0.199  Sum_probs=72.1

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CC---C--cccCHHHH--HHhCCeeeeccC--
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DG---F--SVVKLNEV--IRTVDIVVTATG--  173 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g---~--~~~~l~e~--~~~aDvvi~~~~--  173 (258)
                      .+.+|++++|+|+|-.+++++..|+..|+ +|++++|+.++.++..+ .+   .  ......+.  ..++|++|.||.  
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            45579999999999999999999999996 69999999988654332 11   1  11222221  116899999862  


Q ss_pred             ccc-----cccHHHHhcCCCCcEEEecCCC-Chhhchh-hhcCCCceeeee
Q psy16115        174 NKN-----VVTREHMDKMKNGCVVCNMGHS-NTEIDVN-SLRTPDLTWEKV  217 (258)
Q Consensus       174 ~~~-----~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~-~l~~~~i~~~~~  217 (258)
                      ...     .++   .+.++++.++.|+=-. .+..+++ +=+.|...+.|.
T Consensus       202 m~~~~~~~~~~---~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~~idGl  249 (283)
T COG0169         202 MAGPEGDSPVP---AELLPKGAIVYDVVYNPLETPLLREARAQGAKTIDGL  249 (283)
T ss_pred             CCCCCCCCCCc---HHhcCcCCEEEEeccCCCCCHHHHHHHHcCCeEECcH
Confidence            111     232   4568899999998655 2334444 334454455553

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.95  E-value=0.0025  Score=56.90  Aligned_cols=88  Identities=19%  Similarity=0.234  Sum_probs=66.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHH--HH-HhCCeeeeccCccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNE--VI-RTVDIVVTATGNKNVV  178 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e--~~-~~aDvvi~~~~~~~~i  178 (258)
                      +|++|+|.|. |.+|+.+++.++..|++|++... +.+...+.+.|....     +..+  .. ...|+++.+.+... +
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-~  216 (331)
T cd08273         139 TGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHAALRELGATPIDYRTKDWLPAMLTPGGVDVVFDGVGGES-Y  216 (331)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHHHHHHcCCeEEcCCCcchhhhhccCCCceEEEECCchHH-H
Confidence            7899999997 99999999999999999888876 666555556664211     1111  11 24799999887665 4


Q ss_pred             cHHHHhcCCCCcEEEecCCC
Q psy16115        179 TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . ..++.+++++.++.+|..
T Consensus       217 ~-~~~~~l~~~g~~v~~g~~  235 (331)
T cd08273         217 E-ESYAALAPGGTLVCYGGN  235 (331)
T ss_pred             H-HHHHHhcCCCEEEEEccC
Confidence            3 778889999999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=96.94  E-value=0.0037  Score=54.06  Aligned_cols=87  Identities=17%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH----hCCCc----ccCHHHHHH---hCCeeeec----
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC----MDGFS----VVKLNEVIR---TVDIVVTA----  171 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~----~~g~~----~~~l~e~~~---~aDvvi~~----  171 (258)
                      +.|++|+=||+|  |..++..+...|++|++.|.++...+.|+    +.|..    ..+.+++..   ..|+|++.    
T Consensus        58 l~g~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            799999999999  55777888889999999999988766554    33433    345667665   57999884    


Q ss_pred             -cCccccccHHHHhcCCCCcEEEec
Q psy16115        172 -TGNKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       172 -~~~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                       ...+..+-....+++|||++++.-
T Consensus       136 Hv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         136 HVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             ccCCHHHHHHHHHHHcCCCcEEEEe
Confidence             444544444677888999988653

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.92  E-value=0.0027  Score=57.16  Aligned_cols=99  Identities=10%  Similarity=0.101  Sum_probs=63.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-CCccc------------CHHHHHHhCCeeeeccCccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFSVV------------KLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-g~~~~------------~l~e~~~~aDvvi~~~~~~~  176 (258)
                      .+|+|+|+|.||..++-.|...|.+|+++++..++.+...+. |....            ...+.....|+|++|+.+.+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~   82 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD   82 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence            479999999999999999999999999999976555433322 32210            01112345799999975443


Q ss_pred             ccc--HHHHhcCCCCcEEEecCCC--Chhhchhhhc
Q psy16115        177 VVT--REHMDKMKNGCVVCNMGHS--NTEIDVNSLR  208 (258)
Q Consensus       177 ~i~--~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~  208 (258)
                      .-.  ++....+.++..++-.-.|  ..+.+.+.+.
T Consensus        83 ~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~  118 (305)
T PRK05708         83 AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVP  118 (305)
T ss_pred             HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCC
Confidence            221  1334456777777766555  4444444443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.91  E-value=0.0033  Score=61.85  Aligned_cols=90  Identities=16%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHHH-----HhCCeeeeccCccccc-
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEVI-----RTVDIVVTATGNKNVV-  178 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~~-----~~aDvvi~~~~~~~~i-  178 (258)
                      ..+|.|+|+|++|+.+++.|+..|.+++++|.|+++.+.+++.|....    +-.+.+     +++|.++.++++...- 
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            468999999999999999999999999999999999888877776431    223333     4689998886554211 


Q ss_pred             -cHHHHhcCCCCcEEEecCCC
Q psy16115        179 -TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 -~~~~l~~~k~g~~ivnvg~~  198 (258)
                       -....+.+.|...++--.+.
T Consensus       480 ~i~~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        480 KIVELCQQHFPHLHILARARG  500 (601)
T ss_pred             HHHHHHHHHCCCCeEEEEeCC
Confidence             11334455566566544443

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=96.91  E-value=0.0063  Score=53.41  Aligned_cols=89  Identities=25%  Similarity=0.308  Sum_probs=67.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~------~~aDvvi~~~~~  174 (258)
                      .|++++|.|. |.+|+.+++.++..|++|++.+.++.+...+.+.|...      .+..+.+      ...|+++.+.+.
T Consensus       139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~  218 (323)
T cd08241         139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGG  218 (323)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccH
Confidence            6899999998 99999999999999999999988887766665555421      1122221      137999988765


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       ..++ ..++.+++++.++++|..
T Consensus       219 -~~~~-~~~~~~~~~g~~v~~~~~  240 (323)
T cd08241         219 -DVFE-ASLRSLAWGGRLLVIGFA  240 (323)
T ss_pred             -HHHH-HHHHhhccCCEEEEEccC
Confidence             3443 678889999999998864

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=96.91  E-value=0.0035  Score=55.75  Aligned_cols=89  Identities=25%  Similarity=0.309  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----CH-HHH---H--HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----KL-NEV---I--RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l-~e~---~--~~aDvvi~~~~~  174 (258)
                      .|++++|.|.+ .+|+.+++.++..|++|+++++++.+...+...+... .     +. +.+   .  ...|+++.+.+.
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~  245 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGA  245 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcH
Confidence            78999999997 6999999999999999999988887766555444321 1     11 111   1  146999988765


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . .++ +.++.+++++.++++|..
T Consensus       246 ~-~~~-~~~~~l~~~G~~v~~~~~  267 (342)
T cd08266         246 A-TWE-KSLKSLARGGRLVTCGAT  267 (342)
T ss_pred             H-HHH-HHHHHhhcCCEEEEEecC
Confidence            3 343 678889999999999865

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.90  E-value=0.0038  Score=55.73  Aligned_cols=100  Identities=21%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-C----CC---cccC---HHHHHHhCCeeeeccC
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-D----GF---SVVK---LNEVIRTVDIVVTATG  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~----g~---~~~~---l~e~~~~aDvvi~~~~  173 (258)
                      ++.+++++|+|+|-.|++++..|...|+ +++++||++++.+...+ .    +.   ...+   ..+.+..+|+|+.++.
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            4678999999999999999999999998 69999999887654321 1    11   1112   2345567999999862


Q ss_pred             --ccc----cccHHHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115        174 --NKN----VVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       174 --~~~----~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                        ...    .++   ...++++.++.|+--. .+..++.+-+
T Consensus       204 ~Gm~~~~~~~~~---~~~l~~~~~v~D~vY~P~~T~ll~~A~  242 (283)
T PRK14027        204 MGMPAHPGTAFD---VSCLTKDHWVGDVVYMPIETELLKAAR  242 (283)
T ss_pred             CCCCCCCCCCCC---HHHcCCCcEEEEcccCCCCCHHHHHHH
Confidence              111    232   2346778888888655 3334444333

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.89  E-value=0.015  Score=47.27  Aligned_cols=90  Identities=18%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             CCCEEEEEcC--chHHHHHHHHHHhCCCEEEEEeCChhh--H-----H----HHHhCCC--c-ccCHHHHHHhCCeeeec
Q psy16115        108 GGKQVVLCGY--GEVGKGCCQSLKGLGCVIYITEIDPIC--A-----L----QACMDGF--S-VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~--G~IG~~~a~~l~~~G~~Vi~~d~~~~~--~-----~----~a~~~g~--~-~~~l~e~~~~aDvvi~~  171 (258)
                      .|++|+++|-  +++..+++..+..+|+++.++.+....  .     .    .+.+.|.  . ..++++.++++|+|+.-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            4789999993  789999999999999998888655421  1     0    1122233  2 34799999999999885


Q ss_pred             c-C--------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115        172 T-G--------------NKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       172 ~-~--------------~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      . .              ....++.+.++.++++++|..+..
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP  121 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLP  121 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCC
Confidence            3 1              115678888888999999998876

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=96.88  E-value=0.0067  Score=54.37  Aligned_cols=87  Identities=17%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCcc-----cCHHHHHH-----hCCeeeeccCccc
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSV-----VKLNEVIR-----TVDIVVTATGNKN  176 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~-----~~l~e~~~-----~aDvvi~~~~~~~  176 (258)
                      |.+|+|.|. |.+|+.+++.++.+ |++|++...++++...+.+.|++.     .++.+.+.     ..|+++.+.+...
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~~~  228 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHTDQ  228 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCcHH
Confidence            899999995 89999999999998 999999887777766666667532     12222222     4799998765555


Q ss_pred             cccHHHHhcCCCCcEEEecC
Q psy16115        177 VVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg  196 (258)
                      .+. +.++.+++++++++++
T Consensus       229 ~~~-~~~~~l~~~G~~v~~~  247 (336)
T TIGR02817       229 HFK-EIVELLAPQGRFALID  247 (336)
T ss_pred             HHH-HHHHHhccCCEEEEEc
Confidence            554 7888999999999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=96.87  E-value=0.0043  Score=54.55  Aligned_cols=89  Identities=21%  Similarity=0.299  Sum_probs=66.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc----c--CHH----HHH--HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV----V--KLN----EVI--RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~----~--~l~----e~~--~~aDvvi~~~~~  174 (258)
                      .|++++|.|. |.+|+.+++.++..|.+|++.++++.+...+.+.|.+.    .  +..    +..  +..|+++.+.+.
T Consensus       144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~  223 (325)
T cd08253         144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLAN  223 (325)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCch
Confidence            7899999995 88999999999999999999998887766666666431    1  111    111  147899988765


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .. + ...++.+++++.++++|..
T Consensus       224 ~~-~-~~~~~~l~~~g~~v~~~~~  245 (325)
T cd08253         224 VN-L-AKDLDVLAPGGRIVVYGSG  245 (325)
T ss_pred             HH-H-HHHHHhhCCCCEEEEEeec
Confidence            43 3 3567788899999999874

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.85  E-value=0.004  Score=58.66  Aligned_cols=66  Identities=20%  Similarity=0.405  Sum_probs=47.5

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH----HHHHhCCCccc---CHHHHHHh-CCeeeecc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVV---KLNEVIRT-VDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~----~~a~~~g~~~~---~l~e~~~~-aDvvi~~~  172 (258)
                      +.|+++.|+|.|.+|+++|+.|...|++|+++|.+....    ......|....   ...+.+.. .|+|+..+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~   76 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP   76 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence            578999999999999999999999999999999765321    11223454432   23344444 89988865

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.85  E-value=0.0052  Score=54.85  Aligned_cols=85  Identities=21%  Similarity=0.246  Sum_probs=57.2

Q ss_pred             EEEEEcCchHHHHHHHHHHh-CCCE-EEEEeCChhh--HHHHHhCCCc--ccCHHHHHH--hCCeeeeccCccccccHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKG-LGCV-IYITEIDPIC--ALQACMDGFS--VVKLNEVIR--TVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~-~G~~-Vi~~d~~~~~--~~~a~~~g~~--~~~l~e~~~--~aDvvi~~~~~~~~i~~~~  182 (258)
                      +|+|||+|.||...+..+.. -+.+ +-++|+++++  +..+.+.|..  +.+.++++.  +.|+|+.++++..-.. ..
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e-~a   81 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHAR-HA   81 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHH-HH
Confidence            79999999999987666554 4567 4457888865  3456667764  346788876  4788999976553332 34


Q ss_pred             HhcCCCCcEEEecC
Q psy16115        183 MDKMKNGCVVCNMG  196 (258)
Q Consensus       183 l~~~k~g~~ivnvg  196 (258)
                      .+.++.|..+++-.
T Consensus        82 ~~al~aGk~VIdek   95 (285)
T TIGR03215        82 RLLAELGKIVIDLT   95 (285)
T ss_pred             HHHHHcCCEEEECC
Confidence            44556676765544

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.85  E-value=0.0029  Score=57.06  Aligned_cols=88  Identities=18%  Similarity=0.174  Sum_probs=57.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHH-HHHhCC-Cc--------ccCHHHHHHhCCeeeeccCccc--
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICAL-QACMDG-FS--------VVKLNEVIRTVDIVVTATGNKN--  176 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~-~a~~~g-~~--------~~~l~e~~~~aDvvi~~~~~~~--  176 (258)
                      +|+|||+|.+|..+|..+...|  .+|.++|+++.+.. .+.... ..        .....+.+++||+++++.+.+.  
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~~~   81 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQKP   81 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCCCC
Confidence            6999999999999999999989  47999999886543 222211 10        0122355889999999864321  


Q ss_pred             -------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 -------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 -------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                                   ++.  .+.+....+.+++++++.+
T Consensus        82 ~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP  118 (308)
T cd05292          82 GETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNP  118 (308)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence                         111  0123334577888888644

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.84  E-value=0.0026  Score=59.97  Aligned_cols=64  Identities=17%  Similarity=0.259  Sum_probs=49.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc-----c---CHHHH-HHhCCeeeeccCc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-----V---KLNEV-IRTVDIVVTATGN  174 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-----~---~l~e~-~~~aDvvi~~~~~  174 (258)
                      ++.|+|+|.+|+.+++.|...|.+|+++|+++.+...+.+ .+...     .   .++++ +.++|.++.++..
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            6899999999999999999999999999999988765544 44322     1   23333 5578999888644

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.84  E-value=0.0031  Score=59.61  Aligned_cols=67  Identities=27%  Similarity=0.451  Sum_probs=49.7

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH----HHHHhCCCcccC---HHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA----LQACMDGFSVVK---LNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~----~~a~~~g~~~~~---l~e~~~~aDvvi~~~~  173 (258)
                      +.+++|+|+|+|.-|+++++.|+..|++|+++|.++...    ......++.+..   ..+....+|+|+..+|
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG   78 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG   78 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC
Confidence            359999999999999999999999999999999776551    111234443321   2255677999999864

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.84  E-value=0.0048  Score=56.99  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=63.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------C-------------Cc-ccCHHHHHHhCCeee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------G-------------FS-VVKLNEVIRTVDIVV  169 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------g-------------~~-~~~l~e~~~~aDvvi  169 (258)
                      ++.|+|.|-+|...+..+...|.+|+.+|+++.+.......       |             .. ..+.++.++.+|++|
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~f   81 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVF   81 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEE
Confidence            68999999999999999999999999999998875432211       1             11 235667778899999


Q ss_pred             eccCcccc----cc--------HHHHhcCCCCcEEEecCCC
Q psy16115        170 TATGNKNV----VT--------REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       170 ~~~~~~~~----i~--------~~~l~~~k~g~~ivnvg~~  198 (258)
                      +|++|+.-    +|        ++..+.++..+++|+=|.-
T Consensus        82 IavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTV  122 (414)
T COG1004          82 IAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTV  122 (414)
T ss_pred             EEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCC
Confidence            99776632    22        1234556666888876654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.83  E-value=0.003  Score=62.37  Aligned_cols=86  Identities=14%  Similarity=0.210  Sum_probs=61.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHHH-----HhCCeeeeccCcccc--
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEVI-----RTVDIVVTATGNKNV--  177 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~~-----~~aDvvi~~~~~~~~--  177 (258)
                      .++|.|+|+|++|+.+++.|++.|.+++++|.|+++.+.+++.|....    +-.+.+     +++|.++.++.....  
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            478999999999999999999999999999999999888877776532    223333     368999988654321  


Q ss_pred             ccHHHHhcCCCCcEEEe
Q psy16115        178 VTREHMDKMKNGCVVCN  194 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivn  194 (258)
                      .-....+.+.|+..++-
T Consensus       480 ~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        480 QLVELVKEHFPHLQIIA  496 (621)
T ss_pred             HHHHHHHHhCCCCeEEE
Confidence            11133444555555543

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=96.83  E-value=0.0068  Score=53.96  Aligned_cols=89  Identities=15%  Similarity=0.171  Sum_probs=66.7

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----C-HHHHH------HhCCeeeeccC
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----K-LNEVI------RTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~-l~e~~------~~aDvvi~~~~  173 (258)
                      .|.+|+|.| .|.+|+.+++.++..|++++++..++++...+.+.|.+. .     + +.+.+      +..|+++.+.+
T Consensus       140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~  219 (334)
T PTZ00354        140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVG  219 (334)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCc
Confidence            689999999 589999999999999999877888888777666666531 1     1 22211      13689998876


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . ..+. ..++.+++++.++++|..
T Consensus       220 ~-~~~~-~~~~~l~~~g~~i~~~~~  242 (334)
T PTZ00354        220 G-SYLS-ETAEVLAVDGKWIVYGFM  242 (334)
T ss_pred             h-HHHH-HHHHHhccCCeEEEEecC
Confidence            4 3443 678889999999998753

>PRK08324 short chain dehydrogenase; Validated

Probab=96.83  E-value=0.0041  Score=62.02  Aligned_cols=42  Identities=24%  Similarity=0.455  Sum_probs=37.1

Q ss_pred             ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.|++++|.|. |.||+.+++.+...|++|+++++++.+...
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~  461 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEA  461 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHH
Confidence            468999999994 889999999999999999999999876544

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.82  E-value=0.004  Score=55.89  Aligned_cols=86  Identities=22%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             EEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HH---hC----CC----cc-cCHHHHHHhCCeeeeccCccc-
Q psy16115        112 VVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-AC---MD----GF----SV-VKLNEVIRTVDIVVTATGNKN-  176 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~---~~----g~----~~-~~l~e~~~~aDvvi~~~~~~~-  176 (258)
                      |+|||+|.||..+|..+...|. +|+++|+++.++.. +.   +.    +.    .. .+. +.+++||+|+++.+++. 
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~   79 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence            5899999999999999987765 99999998765321 11   10    11    11 233 45889999999754321 


Q ss_pred             --------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 --------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 --------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                                    ++.  .+.++...+.+++++++.+
T Consensus        80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP  117 (300)
T cd01339          80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNP  117 (300)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence                          111  0123334577888888755

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.82  E-value=0.015  Score=51.74  Aligned_cols=89  Identities=22%  Similarity=0.204  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      .|.+|.|.|.|.+|+.+++.++..|++|++.+.++.+...+.+.|.+.       .+..+.+.      ..|+++.+.+.
T Consensus       160 ~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  239 (336)
T cd08276         160 PGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGP  239 (336)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECCCh
Confidence            789999999999999999999999999999988877766655555431       12222221      47999998753


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       ..+. ..++.+++++.++++|..
T Consensus       240 -~~~~-~~~~~l~~~G~~v~~g~~  261 (336)
T cd08276         240 -GTLA-QSIKAVAPGGVISLIGFL  261 (336)
T ss_pred             -HHHH-HHHHhhcCCCEEEEEccC
Confidence             3443 678889999999999865

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.81  E-value=0.0033  Score=55.55  Aligned_cols=83  Identities=16%  Similarity=0.266  Sum_probs=48.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEE-EEEeCChhh--HHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPIC--ALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~V-i~~d~~~~~--~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      .+|+|+|+|.||+.+++.+... +.++ .++++....  .......+.. +.+++++-.+.|+|++|+++.... ....+
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~-e~~~~   80 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALK-EHVVP   80 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHH-HHHHH
Confidence            3799999999999999999876 4553 334443221  1111112333 346777634589999997654332 23334


Q ss_pred             cCCCCcEEE
Q psy16115        185 KMKNGCVVC  193 (258)
Q Consensus       185 ~~k~g~~iv  193 (258)
                      .++.|.-++
T Consensus        81 aL~aGk~Vv   89 (265)
T PRK13303         81 ILKAGIDCA   89 (265)
T ss_pred             HHHcCCCEE
Confidence            444444443

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=96.80  E-value=0.011  Score=51.69  Aligned_cols=89  Identities=20%  Similarity=0.261  Sum_probs=66.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHH----HH--HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNE----VI--RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e----~~--~~aDvvi~~~~~  174 (258)
                      .|++++|.|. |.+|+.+++.++..|++|++.++++.+...+.+.|.+..      +..+    ..  ...|+++.+.+.
T Consensus       139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  218 (323)
T cd05276         139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGG  218 (323)
T ss_pred             CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCch
Confidence            7899999996 789999999999999999999888777666655554211      1111    11  147999998775


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .. +. ..++.+++++.++++|..
T Consensus       219 ~~-~~-~~~~~~~~~g~~i~~~~~  240 (323)
T cd05276         219 DY-LA-RNLRALAPDGRLVLIGLL  240 (323)
T ss_pred             HH-HH-HHHHhhccCCEEEEEecC
Confidence            44 33 677888999999998764

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=96.79  E-value=0.0085  Score=53.99  Aligned_cols=88  Identities=20%  Similarity=0.260  Sum_probs=64.4

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----CHHHHH---HhCCeeeeccCcccc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----KLNEVI---RTVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~~---~~aDvvi~~~~~~~~  177 (258)
                      +|++|+|.| .|.+|+.+++.++..|++|++...+ .+...+.+.|.+. .     +..+.+   ...|+++.+.+.. .
T Consensus       162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~-~  239 (350)
T cd08248         162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGD-T  239 (350)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-chHHHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECCChH-H
Confidence            499999999 5999999999999999998877654 4444455555421 1     111211   2479999998765 4


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      + ...++.+++++.++++|..
T Consensus       240 ~-~~~~~~l~~~G~~v~~g~~  259 (350)
T cd08248         240 E-KWALKLLKKGGTYVTLVSP  259 (350)
T ss_pred             H-HHHHHHhccCCEEEEecCC
Confidence            4 3788999999999999854

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.78  E-value=0.0039  Score=60.73  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=51.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHH-----HHhCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEV-----IRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~-----~~~aDvvi~~~~~  174 (258)
                      ...+.|+|+|++|+.+++.|+..|.+++++|.|+++.+.+++.|+...    +-++.     ++++|.++.++++
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence            368999999999999999999999999999999998887777776432    12233     3468888777543

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.77  E-value=0.0038  Score=48.18  Aligned_cols=88  Identities=15%  Similarity=0.105  Sum_probs=53.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHhC-CCEEEEE-eCChhhHHHHHh-CC-Cc-----ccCHHHH-HHhCCeeeeccCcccccc
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGL-GCVIYIT-EIDPICALQACM-DG-FS-----VVKLNEV-IRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~-G~~Vi~~-d~~~~~~~~a~~-~g-~~-----~~~l~e~-~~~aDvvi~~~~~~~~i~  179 (258)
                      +++|+|+ |.+|..++..+... +.++..+ +++..+...+.. .+ ..     ..+.++. ..++|+|+.|+.......
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            5899994 88999999999885 7776554 544322211111 11 11     1111111 247999999975553332


Q ss_pred             H--HHHhcCCCCcEEEecCCC
Q psy16115        180 R--EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       180 ~--~~l~~~k~g~~ivnvg~~  198 (258)
                      .  .....+++|.++|++|..
T Consensus        81 ~~~~~~~~~~~g~~viD~s~~  101 (122)
T smart00859       81 IAPLLPKAAEAGVKVIDLSSA  101 (122)
T ss_pred             HHHHHHhhhcCCCEEEECCcc
Confidence            1  234457899999999865

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.77  E-value=0.0034  Score=55.42  Aligned_cols=89  Identities=21%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----CHH-HHH--HhCCeeeeccCccc-
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----KLN-EVI--RTVDIVVTATGNKN-  176 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~-e~~--~~aDvvi~~~~~~~-  176 (258)
                      .|.+|+|.|. |.+|+.+++.++..|++|++++.+ .+...+.+.|... .     +.. ...  ...|+++.|++... 
T Consensus       143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~  221 (319)
T cd08267         143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPF  221 (319)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchHH
Confidence            7899999997 999999999999999998888754 4444555556421 1     111 111  23699999876321 


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ... .....+++++.++++|..
T Consensus       222 ~~~-~~~~~l~~~g~~i~~g~~  242 (319)
T cd08267         222 SLY-RASLALKPGGRYVSVGGG  242 (319)
T ss_pred             HHH-HhhhccCCCCEEEEeccc
Confidence            111 223348999999999876

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=96.77  E-value=0.01  Score=51.08  Aligned_cols=89  Identities=17%  Similarity=0.182  Sum_probs=66.5

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC--Ccc-c-----CHHHHHH------hCCeeeecc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--FSV-V-----KLNEVIR------TVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g--~~~-~-----~l~e~~~------~aDvvi~~~  172 (258)
                      +|.+|+|.| .|.+|+.+++.++..|.+|++.+.++.+...+...+  .+. .     ++.+.+.      ..|+++.+.
T Consensus       108 ~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  187 (293)
T cd05195         108 KGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSL  187 (293)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCC
Confidence            789999997 799999999999999999988887776665555544  211 1     1222221      479999998


Q ss_pred             CccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 GNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.. .++ ..++.+++++.++.+|..
T Consensus       188 ~~~-~~~-~~~~~l~~~g~~v~~g~~  211 (293)
T cd05195         188 SGE-LLR-ASWRCLAPFGRFVEIGKR  211 (293)
T ss_pred             Cch-HHH-HHHHhcccCceEEEeecc
Confidence            766 554 778899999999988865

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.76  E-value=0.0058  Score=49.96  Aligned_cols=60  Identities=22%  Similarity=0.343  Sum_probs=47.9

Q ss_pred             EEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----cc---CHHHHHHhCCeeeeccC
Q psy16115        112 VVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       112 V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~---~l~e~~~~aDvvi~~~~  173 (258)
                      |+|+|+ |.+|+.+++.|...|.+|++.-|++.+...  ..+++     ..   ++.+.++++|.|+.+.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence            689996 999999999999999999999999987654  33333     12   35666779999999864

...

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.73  E-value=0.0035  Score=55.16  Aligned_cols=87  Identities=16%  Similarity=0.244  Sum_probs=58.7

Q ss_pred             EEEEcC-chHHHHHHHHHHhCC----CEEEEEeCChhhHHHHHh--------C-CCc---ccCHHHHHHhCCeeeeccCc
Q psy16115        112 VVLCGY-GEVGKGCCQSLKGLG----CVIYITEIDPICALQACM--------D-GFS---VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       112 V~IiG~-G~IG~~~a~~l~~~G----~~Vi~~d~~~~~~~~a~~--------~-g~~---~~~l~e~~~~aDvvi~~~~~  174 (258)
                      |+|||+ |.+|..++..+...|    .++.++|+++.++.....        . ...   ..++.+.+++||+|+++.+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999998888    579999998866432111        1 111   12457889999999997432


Q ss_pred             c---c------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        175 K---N------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~---~------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      .   +            ++.  .+.++...+.+++++++.+
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP  121 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNP  121 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            1   1            111  0123344589999999755

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.73  E-value=0.0056  Score=55.22  Aligned_cols=88  Identities=16%  Similarity=0.161  Sum_probs=58.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHhC-------C----Ccc-cCHHHHHHhCCeeeeccCcc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMD-------G----FSV-VKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~~-------g----~~~-~~l~e~~~~aDvvi~~~~~~  175 (258)
                      .+|+|||.|.+|..+|..+...|. +|+++|+++.... .+...       .    ... .+.++ +++||+||++.+++
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            479999999999999999988775 8999999765432 11110       1    111 34555 78999999997643


Q ss_pred             cc----------ccH----H---HHhcCCCCcEEEecCCC
Q psy16115        176 NV----------VTR----E---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~----------i~~----~---~l~~~k~g~~ivnvg~~  198 (258)
                      .-          .|.    +   .+....+++++++++.+
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP  120 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP  120 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            21          111    1   12333578899999876

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.70  E-value=0.0055  Score=52.36  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      +...+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            688999999999999999999999998 59999887

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=96.69  E-value=0.0032  Score=48.24  Aligned_cols=82  Identities=23%  Similarity=0.319  Sum_probs=50.7

Q ss_pred             cCchHHHHHHHHHHhC----CCE-EEEEeCC--hhhHHHHH-hCCCcccCHHHHHH--hCCeeeeccCccccccHHHHhc
Q psy16115        116 GYGEVGKGCCQSLKGL----GCV-IYITEID--PICALQAC-MDGFSVVKLNEVIR--TVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       116 G~G~IG~~~a~~l~~~----G~~-Vi~~d~~--~~~~~~a~-~~g~~~~~l~e~~~--~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      |+|.||+.+++.++..    +.+ +.+++++  ........ .......++++++.  ..|+|++|++...+. .-..+.
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~-~~~~~~   79 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVA-EYYEKA   79 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHH-HHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHH-HHHHHH
Confidence            8999999999999876    566 4457777  11111111 12234567888888  899999996554433 345667


Q ss_pred             CCCCcEEEecCCC
Q psy16115        186 MKNGCVVCNMGHS  198 (258)
Q Consensus       186 ~k~g~~ivnvg~~  198 (258)
                      ++.|.-+|-...+
T Consensus        80 L~~G~~VVt~nk~   92 (117)
T PF03447_consen   80 LERGKHVVTANKG   92 (117)
T ss_dssp             HHTTCEEEES-HH
T ss_pred             HHCCCeEEEECHH
Confidence            7888888766544

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.68  E-value=0.0053  Score=56.19  Aligned_cols=35  Identities=26%  Similarity=0.436  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      |..++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            688999999999999999999999998 79999986

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.66  E-value=0.024  Score=51.05  Aligned_cols=92  Identities=17%  Similarity=0.265  Sum_probs=65.3

Q ss_pred             ccCCCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChhh-----HHHHHhCCCc---ccCHHHHHHhCCeeeeccC-
Q psy16115        106 MFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTATG-  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~-  173 (258)
                      .+.|.+|+++|-|   ++.++.+..+..+|++|.++.+....     ...+.+.|..   ..++++.++++|+|+.-.- 
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~  226 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQ  226 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCcc
Confidence            4789999999985   89999999999999998887554321     1233344554   3578999999999988421 


Q ss_pred             --------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115        174 --------------NKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       174 --------------~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                                    .+..++.+.++.+++++++..+..
T Consensus       227 ~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclP  264 (301)
T TIGR00670       227 KERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLP  264 (301)
T ss_pred             ccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCC
Confidence                          123455566667777777766553

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.65  E-value=0.0096  Score=53.50  Aligned_cols=87  Identities=16%  Similarity=0.199  Sum_probs=57.6

Q ss_pred             EEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------C-Ccc--cCHHHHHHhCCeeeeccCccc--
Q psy16115        112 VVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------G-FSV--VKLNEVIRTVDIVVTATGNKN--  176 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g-~~~--~~l~e~~~~aDvvi~~~~~~~--  176 (258)
                      |+|||+|.+|..+|..+...|.  +++++|+++.+... +.+.       . ...  .+-.+.+++||+|+.+.+++.  
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~   80 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP   80 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence            5799999999999999998883  69999998775432 1111       0 011  111467889999999865432  


Q ss_pred             -------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 -------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 -------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                                   ++.  .+.++...|.+++++++-+
T Consensus        81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP  117 (300)
T cd00300          81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNP  117 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCh
Confidence                         111  0123344588999999865

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.65  E-value=0.0059  Score=53.66  Aligned_cols=96  Identities=15%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             cCcccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH-HH-----hCCCcc-cCHHHH-HHhCCeeeeccC
Q psy16115        103 TDVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ-AC-----MDGFSV-VKLNEV-IRTVDIVVTATG  173 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~-----~~g~~~-~~l~e~-~~~aDvvi~~~~  173 (258)
                      .|.+++..+|+|+|+ |.||..+++.+...+.+....-|+.++... +.     +.+... .+++.. ....+++..++.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~  240 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM  240 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence            477899999999995 789999999999999887777665544321 11     122222 233333 344556666653


Q ss_pred             -ccccccHHHHhcCCCCcEEEecCCC-Chh
Q psy16115        174 -NKNVVTREHMDKMKNGCVVCNMGHS-NTE  201 (258)
Q Consensus       174 -~~~~i~~~~l~~~k~g~~ivnvg~~-~~~  201 (258)
                       +...|+.+   .+|||+.++|-|++ |.+
T Consensus       241 ~~g~~I~pq---~lkpg~~ivD~g~P~dvd  267 (351)
T COG5322         241 PKGVEIFPQ---HLKPGCLIVDGGYPKDVD  267 (351)
T ss_pred             CCCceechh---hccCCeEEEcCCcCcccc
Confidence             33456655   47999999999998 443

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.64  E-value=0.01  Score=53.78  Aligned_cols=88  Identities=16%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--------CCc-------ccCHHHHHHhCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------GFS-------VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--------g~~-------~~~l~e~~~~aDvvi~~~~~  174 (258)
                      .+|.|+|.|.-|.++|+.|...|..|..|.++++...+....        +..       ..++.++++++|+|+.+..+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            589999999999999999999999999999987765432221        111       23688999999999998644


Q ss_pred             cc---cccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KN---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..   ++. +.-..++++..++.++-|
T Consensus        82 ~~~r~v~~-~l~~~l~~~~~iv~~sKG  107 (329)
T COG0240          82 QALREVLR-QLKPLLLKDAIIVSATKG  107 (329)
T ss_pred             HHHHHHHH-HHhhhccCCCeEEEEecc
Confidence            43   222 222346799999999988

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.63  E-value=0.015  Score=52.47  Aligned_cols=98  Identities=13%  Similarity=0.186  Sum_probs=63.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-------------CHHHHHHhCCeeeeccC---c
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-------------KLNEVIRTVDIVVTATG---N  174 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-------------~l~e~~~~aDvvi~~~~---~  174 (258)
                      ++.|+|+|.||...+.+|...|..|++..|++. .+..++.|....             ...+....+|+|++++.   +
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q~   80 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQL   80 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccccH
Confidence            799999999999999999999977888877665 444445454321             12233446899999863   3


Q ss_pred             cccccHHHHhcCCCCcEEEec--CCCChhhchhhhcCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNM--GHSNTEIDVNSLRTPD  211 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnv--g~~~~~~~~~~l~~~~  211 (258)
                      ...+. .....+++.+.++-.  |.+..+ .+...-..+
T Consensus        81 ~~al~-~l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~  117 (307)
T COG1893          81 EEALP-SLAPLLGPNTVVLFLQNGLGHEE-ELRKILPKE  117 (307)
T ss_pred             HHHHH-HhhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcc
Confidence            34443 455566777666643  444555 444443333

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=96.62  E-value=0.011  Score=54.09  Aligned_cols=88  Identities=14%  Similarity=0.151  Sum_probs=60.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC--------CEEEEEeCCh-----hhHHHHHh--C------CCc-------ccCHHHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG--------CVIYITEIDP-----ICALQACM--D------GFS-------VVKLNEVI  162 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G--------~~Vi~~d~~~-----~~~~~a~~--~------g~~-------~~~l~e~~  162 (258)
                      +|+|||.|..|.++|..+...|        .+|..|.+++     .-.+...+  .      ++.       ..++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998877        8999998732     21111111  0      221       13678889


Q ss_pred             HhCCeeeeccCcccc--ccHHHHhcCCCCcEEEecCCC
Q psy16115        163 RTVDIVVTATGNKNV--VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       163 ~~aDvvi~~~~~~~~--i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +++|+|+.+..+..+  +-.+.-..++++..+|++.-|
T Consensus        81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKG  118 (342)
T TIGR03376        81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKG  118 (342)
T ss_pred             hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCC
Confidence            999999999644432  112333456788899999888

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.62  E-value=0.0036  Score=52.95  Aligned_cols=77  Identities=12%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCCCC
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNG  189 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g  189 (258)
                      +++|||. |.+|+.++..++..|..|.                         ++++|+|++|+....+.  +.++.+.  
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------~~~~DlVilavPv~~~~--~~i~~~~--   52 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------IKKADHAFLSVPIDAAL--NYIESYD--   52 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------ECCCCEEEEeCCHHHHH--HHHHHhC--
Confidence            6899998 9999999999999999875                         24789999997443332  3444444  


Q ss_pred             cEEEecCCCChhhchhhhcCCCceeeeeccCc
Q psy16115        190 CVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       190 ~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                      .+++|+|.-+.+.. +.    .....+.+|..
T Consensus        53 ~~v~Dv~SvK~~i~-~~----~~~~vg~HPMf   79 (197)
T PRK06444         53 NNFVEISSVKWPFK-KY----SGKIVSIHPLF   79 (197)
T ss_pred             CeEEeccccCHHHH-Hh----cCCEEecCCCC
Confidence            37899998755421 11    12456666654

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.61  E-value=0.006  Score=56.55  Aligned_cols=35  Identities=26%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      +.+++|+|+|+|.+|..++..|...|. +++++|.+
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            689999999999999999999999998 69999887

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.61  E-value=0.015  Score=51.27  Aligned_cols=89  Identities=19%  Similarity=0.196  Sum_probs=66.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CH----HHHHH--hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KL----NEVIR--TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l----~e~~~--~aDvvi~~~~~  174 (258)
                      ++++++|.|. |.+|+.+++.++..|+++++.+.++.+...+.+.|.+..      +.    .+...  ..|+++.+.+.
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~  223 (328)
T cd08268         144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGG  223 (328)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCch
Confidence            6899999997 889999999999999999998888776655555554211      12    12222  47999998766


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . .. .+.++.+++++.++.+|..
T Consensus       224 ~-~~-~~~~~~l~~~g~~v~~g~~  245 (328)
T cd08268         224 P-QF-AKLADALAPGGTLVVYGAL  245 (328)
T ss_pred             H-hH-HHHHHhhccCCEEEEEEeC
Confidence            3 33 3678889999999998865

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1198|consensus

Probab=96.60  E-value=0.0079  Score=55.24  Aligned_cols=68  Identities=25%  Similarity=0.278  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHHh-----CCeeeeccCcc
Q psy16115        108 GGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIRT-----VDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~~-----aDvvi~~~~~~  175 (258)
                      +|+.|+|+|.+ .+|+.+.+.++..|+..++...+.+..+..++.|++.      .+..|.++.     .|+|+.|.+..
T Consensus       157 ~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~  236 (347)
T KOG1198|consen  157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGS  236 (347)
T ss_pred             CCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCCCC
Confidence            78999999876 5999999999999965555555667777788888652      234444444     79999998665

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.57  E-value=0.014  Score=51.72  Aligned_cols=104  Identities=14%  Similarity=0.094  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHH-hCCCcccCHHHH-HHhCCeeeeccC--ccc------
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MDGFSVVKLNEV-IRTVDIVVTATG--NKN------  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~-~~g~~~~~l~e~-~~~aDvvi~~~~--~~~------  176 (258)
                      .+++++|+|+|-.+++++..|+..|+ +|++++|++++.+... ..+....  ++. ...+|+||.|+.  ...      
T Consensus       121 ~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~Gm~~~~~~~~  198 (272)
T PRK12550        121 PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPIGMAGGPEADK  198 (272)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCccccCCCCcccc
Confidence            46799999999999999999999998 5999999998765432 2232221  111 245899999862  211      


Q ss_pred             -cccHHHHhcCCCCcEEEecCCC-Chhhchhhh-cCCCceeee
Q psy16115        177 -VVTREHMDKMKNGCVVCNMGHS-NTEIDVNSL-RTPDLTWEK  216 (258)
Q Consensus       177 -~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l-~~~~i~~~~  216 (258)
                       .++   .+.++++.++.|+--. .+..++..- +.|.-.+.|
T Consensus       199 ~pi~---~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~G  238 (272)
T PRK12550        199 LAFP---EAEIDAASVVFDVVALPAETPLIRYARARGKTVITG  238 (272)
T ss_pred             CCCC---HHHcCCCCEEEEeecCCccCHHHHHHHHCcCeEeCC
Confidence             233   2347788899998765 333444433 344333333

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.57  E-value=0.0044  Score=47.97  Aligned_cols=86  Identities=21%  Similarity=0.247  Sum_probs=52.3

Q ss_pred             EEEEEc-CchHHHHHHHHHHhC-CCE-EEEEeCChhh---HHHHHh--CCCc---ccC-HHHHHHhCCeeeeccCccccc
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGL-GCV-IYITEIDPIC---ALQACM--DGFS---VVK-LNEVIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~-G~~-Vi~~d~~~~~---~~~a~~--~g~~---~~~-l~e~~~~aDvvi~~~~~~~~i  178 (258)
                      +|+|+| .|.+|+.++++|... .++ +.++.++...   ......  .+..   ..+ ..+.+.++|+||.|+++... 
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~-   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS-   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence            689999 999999999999874 345 4556655511   211111  1121   111 23445889999999754422 


Q ss_pred             cHHHHh-cCCCCcEEEecCCC
Q psy16115        179 TREHMD-KMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~-~~k~g~~ivnvg~~  198 (258)
                       ++... .+++|..+||.+..
T Consensus        80 -~~~~~~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   80 -KELAPKLLKAGIKVIDLSGD   99 (121)
T ss_dssp             -HHHHHHHHHTTSEEEESSST
T ss_pred             -HHHHHHHhhCCcEEEeCCHH
Confidence             12222 25889999998865

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.54  E-value=0.011  Score=55.55  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=47.6

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-HHHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGFSVV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~g~~~~---~l~e~~~~aDvvi~~~~  173 (258)
                      +.++++.|+|.|..|++.++.|+..|.+|.++|..+.... ...+.|+...   ...+.++..|+++..++
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spg   74 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPG   74 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCC
Confidence            4678999999999999999999999999999997654321 1223354331   12244567898888643

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.53  E-value=0.0077  Score=52.46  Aligned_cols=35  Identities=23%  Similarity=0.468  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      +.+.+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            688999999999999999999999997 68888865

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=96.53  E-value=0.015  Score=51.74  Aligned_cols=89  Identities=22%  Similarity=0.236  Sum_probs=64.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHHH----H-hCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEVI----R-TVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~~----~-~aDvvi~~~~~~~~  177 (258)
                      .|++|+|.|. |.+|+.+++.++.+|++|++++.++++...+.+.|++..    +....+    . +.|.++.+.+.. .
T Consensus       146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~  224 (324)
T cd08288         146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPEEADYLRSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGH-T  224 (324)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHH-H
Confidence            4689999998 999999999999999999988888887776767776321    111111    1 346777777643 3


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +. ..+..++.++.++.+|+.
T Consensus       225 ~~-~~~~~~~~~g~~~~~G~~  244 (324)
T cd08288         225 LA-NVLAQTRYGGAVAACGLA  244 (324)
T ss_pred             HH-HHHHHhcCCCEEEEEEec
Confidence            32 566778888899988874

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08251 polyketide_synthase polyketide synthase

Probab=96.52  E-value=0.008  Score=52.41  Aligned_cols=89  Identities=19%  Similarity=0.231  Sum_probs=65.8

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~  174 (258)
                      +|.++.|.| .|.+|+.+++.++..|++|++.+.++.+...+.+.|.+..      +..+.+      ...|+++.+.+.
T Consensus       120 ~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~  199 (303)
T cd08251         120 KGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSG  199 (303)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcH
Confidence            688999975 6789999999999999999999888777666666665311      222222      147899888743


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       ..+. ..++.+++++.++++|..
T Consensus       200 -~~~~-~~~~~l~~~g~~v~~~~~  221 (303)
T cd08251         200 -EAIQ-KGLNCLAPGGRYVEIAMT  221 (303)
T ss_pred             -HHHH-HHHHHhccCcEEEEEecc
Confidence             3443 667889999999998765

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.52  E-value=0.0091  Score=52.12  Aligned_cols=35  Identities=23%  Similarity=0.487  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      |.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            689999999999999999999999997 68888765

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.52  E-value=0.0074  Score=52.00  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      +.+++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            688999999999999999999999998 68888754

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=96.51  E-value=0.025  Score=49.68  Aligned_cols=89  Identities=17%  Similarity=0.315  Sum_probs=66.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH------HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI------RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~------~~aDvvi~~~~~  174 (258)
                      +|+++.|.|. |.+|+.+++.++..|++|++..+++.+...+.+.|....      +..+.+      +..|+++.+.+.
T Consensus       139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  218 (325)
T TIGR02824       139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGG  218 (325)
T ss_pred             CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCch
Confidence            7899999996 889999999999999999998888877665655554211      121211      137999988765


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . .+. ..++.+++++.++.+|..
T Consensus       219 ~-~~~-~~~~~l~~~g~~v~~g~~  240 (325)
T TIGR02824       219 S-YLN-RNIKALALDGRIVQIGFQ  240 (325)
T ss_pred             H-HHH-HHHHhhccCcEEEEEecC
Confidence            3 343 677889999999998864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=96.50  E-value=0.0093  Score=52.09  Aligned_cols=88  Identities=22%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-cc-----CHHHHH--HhCCeeeeccCccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VV-----KLNEVI--RTVDIVVTATGNKNVV  178 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~-----~l~e~~--~~aDvvi~~~~~~~~i  178 (258)
                      +|++++|.|. |.+|..+++.++..|.+|++.+.++ +...+...|.. ..     +..+..  ...|+++.+++.. .+
T Consensus       144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~-~~  221 (309)
T cd05289         144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGE-TL  221 (309)
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCCCchhhccCCCCceEEEECCchH-HH
Confidence            7899999996 9999999999999999988877666 55445555531 11     121111  2369999987765 34


Q ss_pred             cHHHHhcCCCCcEEEecCCC
Q psy16115        179 TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~  198 (258)
                       ...++.+++++.++.+|..
T Consensus       222 -~~~~~~l~~~g~~v~~g~~  240 (309)
T cd05289         222 -ARSLALVKPGGRLVSIAGP  240 (309)
T ss_pred             -HHHHHHHhcCcEEEEEcCC
Confidence             3678889999999999876

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.50  E-value=0.006  Score=57.93  Aligned_cols=66  Identities=20%  Similarity=0.250  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcCchHHHH-HHHHHHhCCCEEEEEeCChhhH-HHHHhCCCccc--CHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGYGEVGKG-CCQSLKGLGCVIYITEIDPICA-LQACMDGFSVV--KLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~-~a~~l~~~G~~Vi~~d~~~~~~-~~a~~~g~~~~--~l~e~~~~aDvvi~~~  172 (258)
                      .+++++.|+|+|..|++ +|+.|+..|++|+++|.++... ....+.|+...  ...+.+.++|+|+..+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp   74 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS   74 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence            37889999999999999 7999999999999999865432 12223455432  2234456789998874

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.50  E-value=0.0084  Score=54.25  Aligned_cols=89  Identities=15%  Similarity=0.229  Sum_probs=58.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------C---Ccc-cCHHHHHHhCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------G---FSV-VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g---~~~-~~l~e~~~~aDvvi~~~~~  174 (258)
                      -.+|+|||+|.||..+|..+...|.  ++.++|+++.++.- +.+.       .   +.. .+.+ .+++||+|+.+.|.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~   81 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGA   81 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCC
Confidence            3599999999999999999987775  69999998765321 1111       1   111 2344 48899999997542


Q ss_pred             c---cc------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        175 K---NV------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~---~~------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      +   +.            +.  .+.+....+.+++++++-+
T Consensus        82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP  122 (312)
T cd05293          82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP  122 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh
Confidence            1   11            11  0123344678999999866

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.50  E-value=0.015  Score=43.96  Aligned_cols=76  Identities=20%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhCCCEEEEEeCChhhHHHHH---hCCCccc-CHHHHHHhCCeeeeccCcccc--ccHH-HHhcCCCCcEE
Q psy16115        120 VGKGCCQSLKGLGCVIYITEIDPICALQAC---MDGFSVV-KLNEVIRTVDIVVTATGNKNV--VTRE-HMDKMKNGCVV  192 (258)
Q Consensus       120 IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~---~~g~~~~-~l~e~~~~aDvvi~~~~~~~~--i~~~-~l~~~k~g~~i  192 (258)
                      -+..+++.|+..|++|.++|+.-.......   ..++... ++++.++++|++++++..+..  ++-+ ..+.|+++.+|
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~i   97 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVI   97 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEE
Confidence            467899999999999999998765543322   1355544 789999999999999866654  3333 34567888899


Q ss_pred             Eec
Q psy16115        193 CNM  195 (258)
Q Consensus       193 vnv  195 (258)
                      +|+
T Consensus        98 iD~  100 (106)
T PF03720_consen   98 IDG  100 (106)
T ss_dssp             EES
T ss_pred             EEC
Confidence            885

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.49  E-value=0.0066  Score=43.24  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      +++|||.|.+|..+|..++.+|.+|+++++.+.-
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5899999999999999999999999999887653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.49  E-value=0.011  Score=58.70  Aligned_cols=94  Identities=22%  Similarity=0.327  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh---------------------HHHHHhCCCcc---------cC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---------------------ALQACMDGFSV---------VK  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~---------------------~~~a~~~g~~~---------~~  157 (258)
                      .+++|+|||.|+.|..+|..|+..|.+|+++|.++..                     .......|++.         .+
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~  271 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT  271 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence            5799999999999999999999999999999876431                     11223445432         13


Q ss_pred             HHHHHHhCCeeeeccCcccc-------------ccH-HHHh------cCCCCcEEEecCCCChh
Q psy16115        158 LNEVIRTVDIVVTATGNKNV-------------VTR-EHMD------KMKNGCVVCNMGHSNTE  201 (258)
Q Consensus       158 l~e~~~~aDvvi~~~~~~~~-------------i~~-~~l~------~~k~g~~ivnvg~~~~~  201 (258)
                      +++.....|.|++++|....             +.. +.+.      ..+.|..++-+|.|+..
T Consensus       272 ~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a  335 (652)
T PRK12814        272 LEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTA  335 (652)
T ss_pred             HHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHH
Confidence            44444568999999765421             111 1222      24556778888888433

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.47  E-value=0.0098  Score=49.17  Aligned_cols=32  Identities=22%  Similarity=0.364  Sum_probs=29.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999998 599998774

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.45  E-value=0.0097  Score=54.81  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +.+++|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            688999999999999999999999998 699988753

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.44  E-value=0.01  Score=55.05  Aligned_cols=35  Identities=29%  Similarity=0.420  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      +.+.+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            688999999999999999999999997 79999876

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.028  Score=48.77  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=35.7

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.++++.|.|. |.||+.+++.|...|++|++.++++.+...
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   45 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAA   45 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            57899999997 569999999999999999999998765443

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.43  E-value=0.019  Score=48.76  Aligned_cols=40  Identities=20%  Similarity=0.217  Sum_probs=35.2

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      ++|+++.|.|.+. ||..+++.+...|++|++.++++.+..
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~   43 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLK   43 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5789999999754 999999999999999999999887653

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.42  E-value=0.019  Score=53.15  Aligned_cols=87  Identities=13%  Similarity=0.200  Sum_probs=59.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC-------CEEEEEeCChhh-----HHHHHhC--------CCc-------ccCHHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG-------CVIYITEIDPIC-----ALQACMD--------GFS-------VVKLNEVI  162 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G-------~~Vi~~d~~~~~-----~~~a~~~--------g~~-------~~~l~e~~  162 (258)
                      .+|+|+|.|..|.++|..+...|       .+|..|.+++..     .+.-.+.        ++.       ..++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            58999999999999999998776       689999887641     1111111        111       23577889


Q ss_pred             HhCCeeeeccCccccccHHHHh------cCCCCcEEEecCCC
Q psy16115        163 RTVDIVVTATGNKNVVTREHMD------KMKNGCVVCNMGHS  198 (258)
Q Consensus       163 ~~aDvvi~~~~~~~~i~~~~l~------~~k~g~~ivnvg~~  198 (258)
                      +++|+|+.+..... +. +.++      .++++..+|.+.-|
T Consensus        92 ~~aDiIvlAVPsq~-l~-~vl~~l~~~~~l~~~~~iIS~aKG  131 (365)
T PTZ00345         92 EDADLLIFVIPHQF-LE-SVLSQIKENNNLKKHARAISLTKG  131 (365)
T ss_pred             hcCCEEEEEcChHH-HH-HHHHHhccccccCCCCEEEEEeCC
Confidence            99999999864433 21 2333      34556688888777

>PRK13529 malate dehydrogenase; Provisional

Probab=96.40  E-value=0.051  Score=52.64  Aligned_cols=97  Identities=19%  Similarity=0.308  Sum_probs=73.9

Q ss_pred             CcCcccCCCEEEEEcCchHHHHHHHHHHh----CCC-------EEEEEeCC-----------hhhHHHHHhCCC------
Q psy16115        102 STDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEID-----------PICALQACMDGF------  153 (258)
Q Consensus       102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~----~G~-------~Vi~~d~~-----------~~~~~~a~~~g~------  153 (258)
                      ..+..+...+++++|+|.-|..+|+.+..    .|.       +++++|+.           +.+...|.....      
T Consensus       288 ~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~  367 (563)
T PRK13529        288 ITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDT  367 (563)
T ss_pred             HhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhccccccccc
Confidence            44667889999999999999999999886    587       68888864           122222322110      


Q ss_pred             --cccCHHHHHHhC--CeeeeccCccccccHHHHhcCCC---CcEEEecCCC
Q psy16115        154 --SVVKLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHS  198 (258)
Q Consensus       154 --~~~~l~e~~~~a--Dvvi~~~~~~~~i~~~~l~~~k~---g~~ivnvg~~  198 (258)
                        ...++.++++.+  |++|-+++..++++++.++.|.+   ..+|.-.+.+
T Consensus       368 ~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP  419 (563)
T PRK13529        368 EGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNP  419 (563)
T ss_pred             ccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCc
Confidence              124789999987  99999998889999999999976   7788888877

>PRK08223 hypothetical protein; Validated

Probab=96.39  E-value=0.013  Score=52.40  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      |.+.+|+|+|+|-+|..+++.|...|. ++.++|.+
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            689999999999999999999999998 68888865

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.38  E-value=0.0097  Score=56.58  Aligned_cols=65  Identities=11%  Similarity=0.061  Sum_probs=44.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---CCcccCHHHHHHhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---GFSVVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---g~~~~~l~e~~~~aDvvi~~~~  173 (258)
                      .|++|+|+|+|.-|+++++.|+. |++|+++|..+.......+.   .+......+.+.++|+|+..++
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPg   72 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPG   72 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCC
Confidence            68999999999999999999995 99999999554322111111   1111112344567899988753

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.38  E-value=0.0085  Score=54.97  Aligned_cols=86  Identities=16%  Similarity=0.195  Sum_probs=54.8

Q ss_pred             EEEEEcC-chHHHHHHHHHHhC-CCEEE-EEeCChhhHH-HHHhC----C-----CcccCHHHHHHhCCeeeeccCcccc
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGL-GCVIY-ITEIDPICAL-QACMD----G-----FSVVKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~-~a~~~----g-----~~~~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      +|+|+|+ |.+|+.+++.|... +.+++ +++.+..... .....    +     ++..+.++...++|++|.|+.+...
T Consensus         2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~s   81 (346)
T TIGR01850         2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGVS   81 (346)
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchHH
Confidence            7999998 99999999999977 56766 4454432111 11001    1     1112455555689999999755422


Q ss_pred             ccHHHHhc-CCCCcEEEecCCC
Q psy16115        178 VTREHMDK-MKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~-~k~g~~ivnvg~~  198 (258)
                        .+.... .+.|..+||.|..
T Consensus        82 --~~~~~~~~~~G~~VIDlS~~  101 (346)
T TIGR01850        82 --AELAPELLAAGVKVIDLSAD  101 (346)
T ss_pred             --HHHHHHHHhCCCEEEeCChh
Confidence              233333 3678999999865

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK05086 malate dehydrogenase; Provisional

Probab=96.37  E-value=0.014  Score=52.76  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=56.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHh-C--CCEEEEEeCChhhHHHHHh--C-C-Cc------ccCHHHHHHhCCeeeeccCcc
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKG-L--GCVIYITEIDPICALQACM--D-G-FS------VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~-~--G~~Vi~~d~~~~~~~~a~~--~-g-~~------~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      ++++|||+ |.||..++..++. .  +..+.++|+++.....+..  . . ..      ..++.+.++++|+|+.|.|..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            47999999 9999999988743 3  3468889987543111111  1 1 11      124467788999999997653


Q ss_pred             cc--------------ccHHHHhc---CCCCcEEEecCCC
Q psy16115        176 NV--------------VTREHMDK---MKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~--------------i~~~~l~~---~k~g~~ivnvg~~  198 (258)
                      +-              +-.+..+.   ..+.+++++++-+
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            22              11123333   3567899998876

>KOG2304|consensus

Probab=96.32  E-value=0.0049  Score=52.91  Aligned_cols=102  Identities=14%  Similarity=0.227  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-----------C-Cc------------------ccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-----------G-FS------------------VVK  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-----------g-~~------------------~~~  157 (258)
                      .=+.|+|+|.|.||..+|+.+...|..|+++|.+...+.+|.+-           + .+                  ..+
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn   89 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN   89 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence            44789999999999999999999999999999998776654331           0 00                  012


Q ss_pred             HHHHHHhCCeeeecc-Ccccc---ccHHHHhcCCCCcEE-EecCCCChhhchhhhcC
Q psy16115        158 LNEVIRTVDIVVTAT-GNKNV---VTREHMDKMKNGCVV-CNMGHSNTEIDVNSLRT  209 (258)
Q Consensus       158 l~e~~~~aDvvi~~~-~~~~~---i~~~~l~~~k~g~~i-vnvg~~~~~~~~~~l~~  209 (258)
                      ..++++++|++|++. ++..+   +.++.-...|+.+++ .|++.-.......++++
T Consensus        90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~  146 (298)
T KOG2304|consen   90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQR  146 (298)
T ss_pred             HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccC
Confidence            444556688888873 33221   111222345777776 45554444444444443

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.31  E-value=0.016  Score=50.62  Aligned_cols=102  Identities=17%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---ccCHHHHHH---hCCeeeeccCccccccHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNEVIR---TVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~---~aDvvi~~~~~~~~i~~~  181 (258)
                      +-.++.|+|.|++++.+++.++..|++|+++|..++........++.   ...+++.+.   ..|.+++.+ ..+-.|.+
T Consensus        99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~vvi~t-h~h~~D~~  177 (246)
T TIGR02964        99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVTDEPEAEVAEAPPGSYFLVLT-HDHALDLE  177 (246)
T ss_pred             CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCceEEecCCHHHHHhcCCCCcEEEEEe-CChHHHHH
Confidence            45799999999999999999999999999999765522111111221   122344443   346666655 33344444


Q ss_pred             HHhc-C-C-CCcEEEecCCC-ChhhchhhhcCC
Q psy16115        182 HMDK-M-K-NGCVVCNMGHS-NTEIDVNSLRTP  210 (258)
Q Consensus       182 ~l~~-~-k-~g~~ivnvg~~-~~~~~~~~l~~~  210 (258)
                      .++. + + +-.++=-+|.. ..+...+.|...
T Consensus       178 ~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~  210 (246)
T TIGR02964       178 LCHAALRRGDFAYFGLIGSKTKRARFEHRLRAR  210 (246)
T ss_pred             HHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            4443 3 2 33366556654 444445555443

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PLN02602 lactate dehydrogenase

Probab=96.30  E-value=0.012  Score=54.06  Aligned_cols=88  Identities=14%  Similarity=0.240  Sum_probs=58.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------C-Ccc---cCHHHHHHhCCeeeeccCcc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------G-FSV---VKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g-~~~---~~l~e~~~~aDvvi~~~~~~  175 (258)
                      ++|+|||+|.||..+|..+...|.  ++..+|+++..+.. +.+.       + ...   .+. +.+++||+|+.+.|.+
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999999987775  69999998765321 1111       1 111   123 4488999999985432


Q ss_pred             ---c-----cccH---------HHHhcCCCCcEEEecCCC
Q psy16115        176 ---N-----VVTR---------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ---~-----~i~~---------~~l~~~k~g~~ivnvg~~  198 (258)
                         +     ++..         +.++...+.+++++++-+
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNP  156 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNP  156 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence               1     1110         123344678999999865

>KOG0399|consensus

Probab=96.30  E-value=0.014  Score=60.27  Aligned_cols=65  Identities=26%  Similarity=0.356  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh---------------------HHHHHhCCCcc---------cC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---------------------ALQACMDGFSV---------VK  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~---------------------~~~a~~~g~~~---------~~  157 (258)
                      .|++|+|||-|+-|++.|..|...|..|++|+|+...                     .....+.|+++         .+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs 1863 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVS 1863 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccccc
Confidence            8999999999999999999999999999999876331                     11112235432         35


Q ss_pred             HHHHHHhCCeeeecc
Q psy16115        158 LNEVIRTVDIVVTAT  172 (258)
Q Consensus       158 l~e~~~~aDvvi~~~  172 (258)
                      ++++.+.-|-|+.|+
T Consensus      1864 ~d~l~~~~daiv~a~ 1878 (2142)
T KOG0399|consen 1864 LDELKKENDAIVLAT 1878 (2142)
T ss_pred             HHHHhhccCeEEEEe
Confidence            788888888888874

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=96.28  E-value=0.019  Score=51.33  Aligned_cols=108  Identities=18%  Similarity=0.174  Sum_probs=79.6

Q ss_pred             cCCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc------ccCHHHHHHh-----CCeeeeccC
Q psy16115        107 FGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS------VVKLNEVIRT-----VDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~------~~~l~e~~~~-----aDvvi~~~~  173 (258)
                      -.|+||+|-| .|.+|..+.+.+|-.|++|+.+--.+++.....+ .|++      ..++.+.+++     .|+.|++.|
T Consensus       149 k~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVG  228 (340)
T COG2130         149 KAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVG  228 (340)
T ss_pred             CCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCC
Confidence            3799999999 6889999999999999999999888887665555 5554      3466666654     599999986


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC---Chh-h-----chhhhcCCCceeee
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS---NTE-I-----DVNSLRTPDLTWEK  216 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~---~~~-~-----~~~~l~~~~i~~~~  216 (258)
                      -. +++ ..+..|+..++|+-+|.-   +.+ .     .+..|..+++.+.+
T Consensus       229 g~-v~D-Av~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~G  278 (340)
T COG2130         229 GE-VLD-AVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQG  278 (340)
T ss_pred             ch-HHH-HHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEE
Confidence            54 454 788899999999988864   222 1     23345555666655

>PRK11579 putative oxidoreductase; Provisional

Probab=96.28  E-value=0.015  Score=53.12  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=42.9

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHHHHhC-CC-cccCHHHHHH--hCCeeeecc
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACMD-GF-SVVKLNEVIR--TVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~a~~~-g~-~~~~l~e~~~--~aDvvi~~~  172 (258)
                      -+|||||+|.||.. .+..++.. +++++ ++|+++.+..  ... +. .+.+++++++  +.|+|++|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~t   72 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPT   72 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcC
Confidence            48999999999984 56666554 67754 5888876543  122 33 2468999986  479999974

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.28  E-value=0.018  Score=54.25  Aligned_cols=67  Identities=22%  Similarity=0.237  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--CCcc-----cCHHHH----HHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--GFSV-----VKLNEV----IRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--g~~~-----~~l~e~----~~~aDvvi~~~~  173 (258)
                      ...+++.|+|+|.+|+.+++.|...|.+|+++|.++++.....+.  +...     .+.+.+    +.++|.++.++.
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~  306 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTN  306 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCC
Confidence            457899999999999999999999999999999999876554442  3321     222222    346899888754

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.28  E-value=0.012  Score=56.57  Aligned_cols=67  Identities=18%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh--HHHHHhC--CCccc---CHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC--ALQACMD--GFSVV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~--~~~a~~~--g~~~~---~l~e~~~~aDvvi~~~~  173 (258)
                      +.+++|+|+|.|..|+++|+.|+..|.+|.++|.....  .......  |+...   ...+.+.++|+|+..++
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~   78 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPG   78 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCC
Confidence            46889999999999999999999999999999975432  1111222  33321   12345567999998753

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.27  E-value=0.018  Score=54.46  Aligned_cols=67  Identities=18%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH-HHHHh---CCCccc---CHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA-LQACM---DGFSVV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-~~a~~---~g~~~~---~l~e~~~~aDvvi~~~~  173 (258)
                      +.+++++|+|.|.+|+.+|+.|...|++|.++|..+... ....+   .|+...   ..+....+.|+|+..++
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spg   76 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPG   76 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCC
Confidence            468999999999999999999999999999999765431 11122   254321   12344567899999753

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.26  E-value=0.032  Score=50.39  Aligned_cols=91  Identities=21%  Similarity=0.237  Sum_probs=63.6

Q ss_pred             ccCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCc--------
Q psy16115        106 MFGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGN--------  174 (258)
Q Consensus       106 ~l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~--------  174 (258)
                      .+.|++|+++|-   +++..+.+..+..+|++++++.+....... ...-....++++.++++|+|+.....        
T Consensus       153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~  231 (305)
T PRK00856        153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MPEYGVHTDLDEVIEDADVVMMLRVQKERMDGGL  231 (305)
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-ccceEEECCHHHHhCCCCEEEECCcccccccccc
Confidence            378999999997   589999999999999999888654332111 00001245789999999999885311        


Q ss_pred             ---------cccccHHHHhcCCCCcEEEecCC
Q psy16115        175 ---------KNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       175 ---------~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                               ...++++.++.+|+++++..+..
T Consensus       232 ~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLP  263 (305)
T PRK00856        232 LPSYEEYKRSYGLTAERLALAKPDAIVMHPGP  263 (305)
T ss_pred             hHHHHHHhccCccCHHHHhhcCCCCEEECCCC
Confidence                     23466666777777777776654

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.26  E-value=0.011  Score=56.53  Aligned_cols=67  Identities=24%  Similarity=0.347  Sum_probs=46.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHH--HHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQ--ACMDGFSVV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~--a~~~g~~~~---~l~e~~~~aDvvi~~~~  173 (258)
                      +.|++|+|+|+|.-|+++++.|+..|++|+++|.++.. ...  ..+.+....   ...+.+.+.|+|+..++
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Spg   78 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPG   78 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCC
Confidence            46899999999999999999999999999999965322 111  111122111   12345667899998753

>PLN02527 aspartate carbamoyltransferase

Probab=96.21  E-value=0.064  Score=48.42  Aligned_cols=92  Identities=21%  Similarity=0.181  Sum_probs=62.6

Q ss_pred             ccCCCEEEEEcCc---hHHHHHHHHHHhC-CCEEEEEeCChh-----hHHHHHhCCCc---ccCHHHHHHhCCeeeeccC
Q psy16115        106 MFGGKQVVLCGYG---EVGKGCCQSLKGL-GCVIYITEIDPI-----CALQACMDGFS---VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G---~IG~~~a~~l~~~-G~~Vi~~d~~~~-----~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~  173 (258)
                      .+.|.+|+++|-+   ++..+.+..+..+ |++|.++.+...     -...+.+.|..   ..++++.++++|+|+....
T Consensus       148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~  227 (306)
T PLN02527        148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRI  227 (306)
T ss_pred             CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCc
Confidence            3789999999976   6899999998887 999888755322     12223344543   3578999999999998421


Q ss_pred             ----------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115        174 ----------------NKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       174 ----------------~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                                      ....++.+.++..+++++|..+..
T Consensus       228 q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclP  267 (306)
T PLN02527        228 QRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLP  267 (306)
T ss_pred             chhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCC
Confidence                            123455555666677776665543

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=96.21  E-value=0.011  Score=53.78  Aligned_cols=87  Identities=18%  Similarity=0.295  Sum_probs=54.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC----CEEEEE-eCChhhH-HHHHhC---------------------C--Cccc---CH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG----CVIYIT-EIDPICA-LQACMD---------------------G--FSVV---KL  158 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~-d~~~~~~-~~a~~~---------------------g--~~~~---~l  158 (258)
                      +|+|.|+|+||+.+.+.+...+    .+|..+ |....+. ....+.                     |  +...   ++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p   80 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP   80 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence            5899999999999999988653    565554 4333221 111111                     1  0011   23


Q ss_pred             HHHH---HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        159 NEVI---RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       159 ~e~~---~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++.-   .++|+|++|+|..... +...+.++.|+..|+++.+
T Consensus        81 ~~~~w~~~gvDiVie~tG~~~s~-e~a~~~l~aGa~~V~~SaP  122 (325)
T TIGR01532        81 EALPWRALGVDLVLDCTGVYGNR-EQGERHIRAGAKRVLFSHP  122 (325)
T ss_pred             hhccccccCCCEEEEccchhccH-HHHHHHHHcCCeEEEecCC
Confidence            3321   3789999999876444 3556677889888888865

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.19  E-value=0.032  Score=49.11  Aligned_cols=88  Identities=22%  Similarity=0.245  Sum_probs=65.7

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-C----HHHHHH------hCCeeeeccCcc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-K----LNEVIR------TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~----l~e~~~------~aDvvi~~~~~~  175 (258)
                      .|++++|.| .|.+|+.+++.++..|++|+..+++ .+...+.+.|.+.. +    ..+.+.      ..|+++.+.+..
T Consensus       144 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~  222 (326)
T cd08272         144 AGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAAFARSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVGGE  222 (326)
T ss_pred             CCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHHHHHHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCChH
Confidence            789999999 6899999999999999998888776 66655656665321 1    222221      379999987764


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       .+. +.++.+++++.++++|..
T Consensus       223 -~~~-~~~~~l~~~g~~v~~~~~  243 (326)
T cd08272         223 -TLD-ASFEAVALYGRVVSILGG  243 (326)
T ss_pred             -HHH-HHHHHhccCCEEEEEecC
Confidence             343 678889999999988755

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PLN02342 ornithine carbamoyltransferase

Probab=96.18  E-value=0.06  Score=49.46  Aligned_cols=93  Identities=16%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh-----HHHHHhCCC---c-ccCHHHHHHhCCeeeecc---
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGF---S-VVKLNEVIRTVDIVVTAT---  172 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~~g~---~-~~~l~e~~~~aDvvi~~~---  172 (258)
                      .+.|.+|+++|-+. +.++.+..+..+|++|.++.+....     ...+.+.|.   . ..++++.++++|+|+.-.   
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s  270 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS  270 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence            47899999999865 9999999999999998887543221     112333342   2 357899999999999852   


Q ss_pred             -C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 -G------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 -~------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       +            ....++.+.++.+|++++|..++..
T Consensus       271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP~  309 (348)
T PLN02342        271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPA  309 (348)
T ss_pred             cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCCc
Confidence             1            1246777778888888888777654

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.18  E-value=0.016  Score=54.76  Aligned_cols=65  Identities=9%  Similarity=0.079  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH--HHHHh--CCCccc---CHHHHHHhCCeeeecc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA--LQACM--DGFSVV---KLNEVIRTVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~--~~a~~--~g~~~~---~l~e~~~~aDvvi~~~  172 (258)
                      .+-+++|+|.|.+|+++|+.|+..|++|.++|..+...  ....+  .|+...   ...+.+.++|+|+..+
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp   76 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISP   76 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECC
Confidence            56799999999999999999999999999999765321  11112  254431   1234466789998875

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.18  E-value=0.016  Score=53.61  Aligned_cols=61  Identities=20%  Similarity=0.300  Sum_probs=43.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC---CcccC---HHHHHHhCCeeee
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---FSVVK---LNEVIRTVDIVVT  170 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g---~~~~~---l~e~~~~aDvvi~  170 (258)
                      ++|||+|.|..|+++++.++.+|.+|+++|.++..........   ..+.+   +.++++.+|+|..
T Consensus         3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            7899999999999999999999999999998765422111111   11222   5556677888743

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.16  E-value=0.016  Score=59.98  Aligned_cols=67  Identities=15%  Similarity=0.031  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh------------h---------HHHHHhCCCcc---------cC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI------------C---------ALQACMDGFSV---------VK  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~------------~---------~~~a~~~g~~~---------~~  157 (258)
                      .|++|+|||.|+-|+.+|..|...|.+|+++|+.+.            +         .......|++.         .+
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit  384 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTAT  384 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEe
Confidence            699999999999999999999999999999986421            1         11223345541         24


Q ss_pred             HHHHHH-hCCeeeeccCc
Q psy16115        158 LNEVIR-TVDIVVTATGN  174 (258)
Q Consensus       158 l~e~~~-~aDvvi~~~~~  174 (258)
                      ++++.+ +.|.|++++|.
T Consensus       385 ~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        385 LEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             HHHhccccCCEEEEeCCC
Confidence            666665 58999999765

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=96.12  E-value=0.085  Score=51.31  Aligned_cols=96  Identities=17%  Similarity=0.291  Sum_probs=73.4

Q ss_pred             CcCcccCCCEEEEEcCchHHHHHHHHHHh-----CCC-------EEEEEeCC------------hhhHHHHHhCCCcccC
Q psy16115        102 STDVMFGGKQVVLCGYGEVGKGCCQSLKG-----LGC-------VIYITEID------------PICALQACMDGFSVVK  157 (258)
Q Consensus       102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~-----~G~-------~Vi~~d~~------------~~~~~~a~~~g~~~~~  157 (258)
                      ..+..+...+++++|+|.-|..+|+.+..     .|.       +++++|+.            +.+...+.. .-...+
T Consensus       314 ~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~  392 (581)
T PLN03129        314 ATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-HEPGAS  392 (581)
T ss_pred             HhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-cccCCC
Confidence            34567889999999999999999999887     466       58888754            111222222 223458


Q ss_pred             HHHHHHh--CCeeeeccCccccccHHHHhcCC---CCcEEEecCCC
Q psy16115        158 LNEVIRT--VDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHS  198 (258)
Q Consensus       158 l~e~~~~--aDvvi~~~~~~~~i~~~~l~~~k---~g~~ivnvg~~  198 (258)
                      +.++++.  .|++|-+++..+.++++.++.|.   +..+|.-.+.+
T Consensus       393 L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP  438 (581)
T PLN03129        393 LLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP  438 (581)
T ss_pred             HHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence            9999998  89999999888999999999995   77788877776

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=96.11  E-value=0.023  Score=51.72  Aligned_cols=88  Identities=16%  Similarity=0.229  Sum_probs=55.8

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCC-------CEEEEEeCChhh--HHH-HHhC--------C-C-cccCHHHHHHhCCeee
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLG-------CVIYITEIDPIC--ALQ-ACMD--------G-F-SVVKLNEVIRTVDIVV  169 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G-------~~Vi~~d~~~~~--~~~-a~~~--------g-~-~~~~l~e~~~~aDvvi  169 (258)
                      +|+|+|+ |.||..++..|...+       .++.++|+++..  +.. +.+.        + . ...++.+.++++|+|+
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI   83 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI   83 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence            6999999 999999999998744       379999986532  111 1000        0 0 0234567788999999


Q ss_pred             eccCcccccc--------------H---HHHhcC-CCCcEEEecCCC
Q psy16115        170 TATGNKNVVT--------------R---EHMDKM-KNGCVVCNMGHS  198 (258)
Q Consensus       170 ~~~~~~~~i~--------------~---~~l~~~-k~g~~ivnvg~~  198 (258)
                      .+.+.+..-+              +   +.+... +++++++.++.+
T Consensus        84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNP  130 (325)
T cd01336          84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNP  130 (325)
T ss_pred             EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence            9754321100              1   123333 468899998865

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.06  E-value=0.029  Score=53.52  Aligned_cols=68  Identities=22%  Similarity=0.300  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh---------------------HHHHHhCCCcc---------cC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC---------------------ALQACMDGFSV---------VK  157 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~---------------------~~~a~~~g~~~---------~~  157 (258)
                      .+++|+|||.|+.|..+|..|+..|.+|+++|+.+.-                     .....+.|++.         .+
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~  221 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDIT  221 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCC
Confidence            6899999999999999999999999999999865321                     11233345432         12


Q ss_pred             HHHHHHhCCeeeeccCcc
Q psy16115        158 LNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       158 l~e~~~~aDvvi~~~~~~  175 (258)
                      .++.....|.+++++|..
T Consensus       222 ~~~~~~~~d~vvlAtGa~  239 (471)
T PRK12810        222 AEELLAEYDAVFLGTGAY  239 (471)
T ss_pred             HHHHHhhCCEEEEecCCC
Confidence            345555789999997654

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.052  Score=46.37  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      +.|+++.|.|. |.||+.+++.|...|++|++++++.
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~   40 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK   40 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence            57899999997 6799999999999999998888764

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.05  E-value=0.028  Score=50.70  Aligned_cols=63  Identities=29%  Similarity=0.352  Sum_probs=47.8

Q ss_pred             CEEEEEcCchHH-HHHHHHHHhCC--CE-EEEEeCChhhHHH-HHhCCCc--ccCHHHHHHh--CCeeeecc
Q psy16115        110 KQVVLCGYGEVG-KGCCQSLKGLG--CV-IYITEIDPICALQ-ACMDGFS--VVKLNEVIRT--VDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG-~~~a~~l~~~G--~~-Vi~~d~~~~~~~~-a~~~g~~--~~~l~e~~~~--aDvvi~~~  172 (258)
                      .+|||||+|.++ ...+..++..+  +. +-++|+++++++. +.+.+..  +.+++++++.  .|+|++|+
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iat   75 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIAT   75 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcC
Confidence            589999999766 45777887776  45 6668999988653 5566763  6689999985  58999974

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=96.02  E-value=0.09  Score=50.92  Aligned_cols=97  Identities=19%  Similarity=0.289  Sum_probs=73.7

Q ss_pred             CcCcccCCCEEEEEcCchHHHHHHHHHHh----CCC-------EEEEEeCC------------hhhHHHHHhC-CCc---
Q psy16115        102 STDVMFGGKQVVLCGYGEVGKGCCQSLKG----LGC-------VIYITEID------------PICALQACMD-GFS---  154 (258)
Q Consensus       102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~----~G~-------~Vi~~d~~------------~~~~~~a~~~-g~~---  154 (258)
                      ..+..+...+++++|+|.-|..+|+.+..    .|.       +++++|+.            +.+...|... ...   
T Consensus       290 ~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~  369 (559)
T PTZ00317        290 LSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSS  369 (559)
T ss_pred             HhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccccc
Confidence            34567899999999999999999998874    687       58888753            1222223321 111   


Q ss_pred             ccCHHHHHHhC--CeeeeccCccccccHHHHhcCCC---CcEEEecCCC
Q psy16115        155 VVKLNEVIRTV--DIVVTATGNKNVVTREHMDKMKN---GCVVCNMGHS  198 (258)
Q Consensus       155 ~~~l~e~~~~a--Dvvi~~~~~~~~i~~~~l~~~k~---g~~ivnvg~~  198 (258)
                      ..++.|+++.+  |++|-+++..+.++++.++.|.+   ..+|.-.+.+
T Consensus       370 ~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLSNP  418 (559)
T PTZ00317        370 LKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNP  418 (559)
T ss_pred             CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence            45899999988  99999998889999999999874   7788877777

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=95.98  E-value=0.025  Score=55.09  Aligned_cols=67  Identities=18%  Similarity=0.286  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh---------CC------C-----cccC---HHHHHH
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM---------DG------F-----SVVK---LNEVIR  163 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~---------~g------~-----~~~~---l~e~~~  163 (258)
                      .|++++|.|+ |.||+.+++.|...|++|++++|+..+......         .|      +     +..+   +.+.+.
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLg  158 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALG  158 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhc
Confidence            7899999996 789999999999999999999998876543211         01      1     1122   344566


Q ss_pred             hCCeeeeccCc
Q psy16115        164 TVDIVVTATGN  174 (258)
Q Consensus       164 ~aDvvi~~~~~  174 (258)
                      ++|+||.+.|.
T Consensus       159 giDiVVn~AG~  169 (576)
T PLN03209        159 NASVVICCIGA  169 (576)
T ss_pred             CCCEEEEcccc
Confidence            78999998653

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.98  E-value=0.029  Score=50.41  Aligned_cols=62  Identities=15%  Similarity=0.122  Sum_probs=46.3

Q ss_pred             EEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------cCHHHHHHhCCeeeecc
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------VKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------~~l~e~~~~aDvvi~~~  172 (258)
                      +|+|.| .|.||+.+++.|...|.+|++..|++.+.......+++.        .++.+.++++|+|+.+.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~   72 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAS   72 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence            789999 599999999999999999999998875533222234331        23566678899998864

>PRK06182 short chain dehydrogenase; Validated

Probab=95.96  E-value=0.04  Score=48.06  Aligned_cols=66  Identities=18%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----ccC---HHHHHH-------hCCeeeec
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVK---LNEVIR-------TVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~~---l~e~~~-------~aDvvi~~  171 (258)
                      .+++++|.|. |.||+.+++.+...|++|++.++++.++......+..     ..+   ++++++       ..|+++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            5789999996 5699999999999999999999988766543333332     122   233333       46999987


Q ss_pred             cC
Q psy16115        172 TG  173 (258)
Q Consensus       172 ~~  173 (258)
                      .+
T Consensus        82 ag   83 (273)
T PRK06182         82 AG   83 (273)
T ss_pred             CC
Confidence            64

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.035  Score=48.73  Aligned_cols=46  Identities=15%  Similarity=0.294  Sum_probs=37.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF  153 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~  153 (258)
                      .+++++|.|. |.||+.+++.+...|++|++.++++..+......++
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~   49 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGL   49 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCc
Confidence            4689999998 779999999999999999999999877654444443

>PRK05693 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.049  Score=47.51  Aligned_cols=64  Identities=19%  Similarity=0.385  Sum_probs=45.1

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----ccC---HHHHHH-------hCCeeeeccC
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VVK---LNEVIR-------TVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~~---l~e~~~-------~aDvvi~~~~  173 (258)
                      |+++|.|+ |.||+.+++.+...|++|+++++++.+.......+..     ..+   ++++++       ..|+++.+.+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag   81 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG   81 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            68899996 5599999999999999999999987765443333332     112   222222       4699998764

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=95.91  E-value=0.09  Score=48.15  Aligned_cols=92  Identities=18%  Similarity=0.074  Sum_probs=66.2

Q ss_pred             ccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChh----h-HHH----HHhCCCc---ccCHHHHHHhCCeeeecc
Q psy16115        106 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPI----C-ALQ----ACMDGFS---VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       106 ~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~----~-~~~----a~~~g~~---~~~l~e~~~~aDvvi~~~  172 (258)
                      .+.|.+|+++|-+ ++..+.+..+..+|++|.++.+...    . ...    +...|..   ..++++.++++|+|+.-.
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  230 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV  230 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence            4789999999984 4999999999999999988755421    1 111    1223432   357899999999998821


Q ss_pred             -----C-------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115        173 -----G-------------NKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       173 -----~-------------~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                           +             ....++++.++.+|++++|..+..
T Consensus       231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP  273 (338)
T PRK02255        231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLP  273 (338)
T ss_pred             cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCC
Confidence                 1             124677777888888888887775

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.90  E-value=0.014  Score=54.92  Aligned_cols=62  Identities=19%  Similarity=0.175  Sum_probs=44.6

Q ss_pred             EEEEEcCchHHHHHHH---HH---HhCCCEEEEEeCChhhHHHHHh--------CCC----c-ccCHHHHHHhCCeeeec
Q psy16115        111 QVVLCGYGEVGKGCCQ---SL---KGLGCVIYITEIDPICALQACM--------DGF----S-VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~---~l---~~~G~~Vi~~d~~~~~~~~a~~--------~g~----~-~~~l~e~~~~aDvvi~~  171 (258)
                      +|+|||.|.+|...+.   .+   ...|.+|+++|+++++++....        .+.    . ..++.+.+++||+|+++
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a   81 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT   81 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence            6999999999998555   33   2335689999999887654221        111    1 23678899999999998


Q ss_pred             c
Q psy16115        172 T  172 (258)
Q Consensus       172 ~  172 (258)
                      .
T Consensus        82 i   82 (423)
T cd05297          82 I   82 (423)
T ss_pred             e
Confidence            5

linked to 3D####ucture

>PRK12742 oxidoreductase; Provisional

Probab=95.90  E-value=0.084  Score=44.71  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeC
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      +.|++++|.|. |.||+.+++.+...|++|++..+
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            57899999996 66999999999999999877654

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=95.90  E-value=0.063  Score=48.42  Aligned_cols=92  Identities=20%  Similarity=0.161  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhH-----HH-HHhCCCc---ccCHHHHHHhCCeeeecc---
Q psy16115        106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICA-----LQ-ACMDGFS---VVKLNEVIRTVDIVVTAT---  172 (258)
Q Consensus       106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-----~~-a~~~g~~---~~~l~e~~~~aDvvi~~~---  172 (258)
                      .+.|.+|+++|- +++.++.+..+..+|++|.++.+.....     +. +.+.|..   ..++++.++++|+|+.-.   
T Consensus       149 ~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~  228 (304)
T PRK00779        149 SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVS  228 (304)
T ss_pred             CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccc
Confidence            378999999997 6799999999999999988875432211     11 3345543   357899999999998741   


Q ss_pred             -C------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115        173 -G------------NKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       173 -~------------~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                       +            ....++.+.++.+|++++|..++.
T Consensus       229 ~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP  266 (304)
T PRK00779        229 MGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLP  266 (304)
T ss_pred             cccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCC
Confidence             1            233566667777788888777664

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=95.87  E-value=0.016  Score=50.96  Aligned_cols=87  Identities=18%  Similarity=0.331  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHh----CCCc---c--cCHHHHH---HhCCeeeecc-
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM----DGFS---V--VKLNEVI---RTVDIVVTAT-  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~----~g~~---~--~~l~e~~---~~aDvvi~~~-  172 (258)
                      .|++|+.+|+|. |......++..|.  +|+++|+++.....+++    .+..   .  .+++++-   ...|+|+... 
T Consensus        77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence            789999999999 8877666666664  69999999987766554    2321   1  1233221   1468887642 


Q ss_pred             -----CccccccHHHHhcCCCCcEEEecC
Q psy16115        173 -----GNKNVVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       173 -----~~~~~i~~~~l~~~k~g~~ivnvg  196 (258)
                           ....++. +..+.+|+|++++-.+
T Consensus       156 ~~~~~d~~~~l~-~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        156 INLSPDKERVFK-EAFRVLKPGGRFAISD  183 (272)
T ss_pred             ccCCCCHHHHHH-HHHHHcCCCcEEEEEE
Confidence                 2234453 7888999999997654

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=95.83  E-value=0.076  Score=48.55  Aligned_cols=93  Identities=18%  Similarity=0.135  Sum_probs=66.0

Q ss_pred             ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhhH-----H----HHHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPICA-----L----QACMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~~-----~----~a~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      .+.|.+|+++|-+  .+.++.+..+..+|++|.++.+.....     .    .+.+.|..   ..++++.++++|+|+.-
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence            4789999999986  489999999999999988875532211     1    12234543   35799999999999883


Q ss_pred             c----C-------------ccccccHHHHhcC-CCCcEEEecCCC
Q psy16115        172 T----G-------------NKNVVTREHMDKM-KNGCVVCNMGHS  198 (258)
Q Consensus       172 ~----~-------------~~~~i~~~~l~~~-k~g~~ivnvg~~  198 (258)
                      .    +             ....++.+.++.. |++++|..++..
T Consensus       233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~  277 (334)
T PRK01713        233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPA  277 (334)
T ss_pred             ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCC
Confidence            1    1             1234666777775 788888887754

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=95.81  E-value=0.0091  Score=50.90  Aligned_cols=66  Identities=21%  Similarity=0.327  Sum_probs=44.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHH--HhCCCEEE-EEeCChhhHHHHHhCCCc---ccCHHHHHHh--CCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSL--KGLGCVIY-ITEIDPICALQACMDGFS---VVKLNEVIRT--VDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l--~~~G~~Vi-~~d~~~~~~~~a~~~g~~---~~~l~e~~~~--aDvvi~~~~~  174 (258)
                      ...+++|+|+|.+|+.+++.+  ...|++++ ++|.++.+.... ..+..   ..+++++++.  .|++++|+..
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~-i~g~~v~~~~~l~~li~~~~iD~ViIa~P~  156 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTK-IGGIPVYHIDELEEVVKENDIEIGILTVPA  156 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCE-eCCeEEcCHHHHHHHHHHCCCCEEEEeCCc
Confidence            567999999999999998863  35688855 478876543211 12221   2356677764  8999998643

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=95.81  E-value=0.021  Score=52.27  Aligned_cols=88  Identities=15%  Similarity=0.123  Sum_probs=53.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhC-CCEEEE-EeCChhhHHHHHh----C---CCcccCHHH-HHHhCCeeeeccCccccc
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGL-GCVIYI-TEIDPICALQACM----D---GFSVVKLNE-VIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~-G~~Vi~-~d~~~~~~~~a~~----~---g~~~~~l~e-~~~~aDvvi~~~~~~~~i  178 (258)
                      .+|+|+|+ |.+|+.+++.+... +.+++. +++.......+..    .   ...+.++++ ...++|+|++|+.+....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~   82 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM   82 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence            58999997 99999999999877 567544 5532211111111    1   111222332 346799999997554322


Q ss_pred             cHHHHhcCCCCcEEEecCCC
Q psy16115        179 TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~  198 (258)
                      + -..+.++.|..+||.+..
T Consensus        83 ~-~v~~a~~aG~~VID~S~~  101 (343)
T PRK00436         83 D-LAPQLLEAGVKVIDLSAD  101 (343)
T ss_pred             H-HHHHHHhCCCEEEECCcc
Confidence            1 223334678999999865

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.79  E-value=0.047  Score=52.32  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+++|+|||.|+.|..+|..|+..|.+|++++..+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            57899999999999999999999999999997653

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.78  E-value=0.024  Score=51.18  Aligned_cols=88  Identities=19%  Similarity=0.232  Sum_probs=57.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHH-HHHhC--CC------c---ccCHHHHHHhCCeeeeccCcc-
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACMD--GF------S---VVKLNEVIRTVDIVVTATGNK-  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~-~a~~~--g~------~---~~~l~e~~~~aDvvi~~~~~~-  175 (258)
                      +|+|||+|.||..+|..+...|.  ++..+|+++.+.. .+...  ..      .   ...-.+.+++||+|+.+.|.+ 
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~~   80 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCCC
Confidence            58999999999999998887775  6999999876532 12211  10      1   112346788999999986432 


Q ss_pred             --ccc---------cH----H---HHhcCCCCcEEEecCCC
Q psy16115        176 --NVV---------TR----E---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 --~~i---------~~----~---~l~~~k~g~~ivnvg~~  198 (258)
                        +.-         |.    +   .+..-.++++++.++-+
T Consensus        81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNP  121 (307)
T cd05290          81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNP  121 (307)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence              211         11    1   12333578899998876

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=95.78  E-value=0.082  Score=47.68  Aligned_cols=92  Identities=20%  Similarity=0.186  Sum_probs=65.6

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeecc-
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTAT-  172 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~~-  172 (258)
                      +.|.+|+++|- +++.++.+..+..+|++|.++.+....     ...    +.+.|..   ..++++.++++|+|+.-. 
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w  225 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW  225 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence            78999999997 569999999999999998887543221     111    2234532   357899999999998831 


Q ss_pred             ---C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 ---G------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ---~------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                         +            ....++++.++.+|+++++..++..
T Consensus       226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP~  266 (304)
T TIGR00658       226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPA  266 (304)
T ss_pred             ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCCC
Confidence               1            1235777777778888888777653

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.77  E-value=0.054  Score=48.19  Aligned_cols=43  Identities=16%  Similarity=0.251  Sum_probs=36.9

Q ss_pred             cccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        105 VMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       105 ~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ..+.|++++|.|. |.||+.+++.|...|++|++.++++.+++.
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~   79 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDA   79 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            3468999999997 569999999999999999999998766543

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=95.77  E-value=0.02  Score=52.07  Aligned_cols=89  Identities=16%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCC-------EEEEEeCChhh--HH-HHHhC--CC-------c-ccCHHHHHHhCCee
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGC-------VIYITEIDPIC--AL-QACMD--GF-------S-VVKLNEVIRTVDIV  168 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~-------~Vi~~d~~~~~--~~-~a~~~--g~-------~-~~~l~e~~~~aDvv  168 (258)
                      -+|+|||+ |.||..+|..+...|.       ++..+|+.+..  +. .+.+.  ..       . ..+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999987774       68999986421  11 12111  11       1 12445778899999


Q ss_pred             eeccCccc---------------ccc--HHHHhcCCC-CcEEEecCCC
Q psy16115        169 VTATGNKN---------------VVT--REHMDKMKN-GCVVCNMGHS  198 (258)
Q Consensus       169 i~~~~~~~---------------~i~--~~~l~~~k~-g~~ivnvg~~  198 (258)
                      +.+.|.+.               ++.  .+.+....+ .++++.++.+
T Consensus        84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNP  131 (323)
T TIGR01759        84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNP  131 (323)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCc
Confidence            99854321               111  012333344 8999999865

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.052  Score=46.01  Aligned_cols=40  Identities=23%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      +.+++++|.|. |.||+.+++.|...|++|++.++++.+..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~   44 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELE   44 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHH
Confidence            46899999996 77999999999999999999999886644

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.75  E-value=0.025  Score=51.39  Aligned_cols=91  Identities=15%  Similarity=0.127  Sum_probs=57.7

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHhC-----CCccc------CHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLG--CVIYITEIDPICALQACMD-----GFSVV------KLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~-----g~~~~------~l~e~~~~aDvvi~~~  172 (258)
                      ++.++|+|+|+ |.||..++..+...+  .++..+|++.... .+.+.     .....      +..+.++++|+|+.+.
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            36789999999 999999999998655  3799999943221 12110     11111      1257889999999986


Q ss_pred             Ccccc--------ccH------HHHhc---CCCCcEEEecCCC
Q psy16115        173 GNKNV--------VTR------EHMDK---MKNGCVVCNMGHS  198 (258)
Q Consensus       173 ~~~~~--------i~~------~~l~~---~k~g~~ivnvg~~  198 (258)
                      |.+.-        +..      +.++.   -.+.++++.++.+
T Consensus        85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP  127 (321)
T PTZ00325         85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP  127 (321)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            54321        111      22223   3567788887766

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.75  E-value=0.081  Score=48.32  Aligned_cols=93  Identities=17%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChh-----hHHH----HHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPI-----CALQ----ACMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~-----~~~~----a~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      .+.|++|+++|-+  ++.++.+..+..+|++|.++.+...     -...    +.+.|..   ..++++.++++|+|+.-
T Consensus       152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence            4789999999975  6999999999999999888754321     1111    2234533   35789999999999984


Q ss_pred             c----C-------------ccccccHHHHhcCC-CCcEEEecCCC
Q psy16115        172 T----G-------------NKNVVTREHMDKMK-NGCVVCNMGHS  198 (258)
Q Consensus       172 ~----~-------------~~~~i~~~~l~~~k-~g~~ivnvg~~  198 (258)
                      .    +             ....++++.++.++ ++++|..++..
T Consensus       232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP~  276 (332)
T PRK04284        232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLPS  276 (332)
T ss_pred             CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCCC
Confidence            1    1             23456767778776 58888887753

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.75  E-value=0.029  Score=47.85  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=35.8

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      ++|++++|.|. |.||+.+++.+...|++|+++++++.+..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~   43 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLE   43 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57899999998 88999999999999999999999876543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.74  E-value=0.059  Score=50.47  Aligned_cols=87  Identities=18%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             ccCCCEEEEEcC----------chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc
Q psy16115        106 MFGGKQVVLCGY----------GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       106 ~l~g~~V~IiG~----------G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+||+.-..... ...+ ...++++.++++|+++.++...
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~-~~~~-~~~~~~~~~~~ad~~v~~t~~~  387 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEV-KGLP-LIDDLEEALKGADALVILTDHD  387 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhh-hhcc-cCCCHHHHHhCCCEEEEecCCH
Confidence            368999999996          346788999999999999999986433221 1111 2357888999999999998666


Q ss_pred             cc--ccHHHHhcCCCCcEEEe
Q psy16115        176 NV--VTREHMDKMKNGCVVCN  194 (258)
Q Consensus       176 ~~--i~~~~l~~~k~g~~ivn  194 (258)
                      ..  ++-+.++.+.+...++|
T Consensus       388 ~~~~~~~~~~~~~~~~~~v~D  408 (411)
T TIGR03026       388 EFKDLDLEKIKDLMKGKVVVD  408 (411)
T ss_pred             HHhccCHHHHHHhcCCCEEEe
Confidence            53  34444543323447776

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.73  E-value=0.038  Score=57.40  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=47.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-CCE-------------EEEEeCChhhHHHHHh-C-CC-----cccCHHHHH---H
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-GCV-------------IYITEIDPICALQACM-D-GF-----SVVKLNEVI---R  163 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~~-------------Vi~~d~~~~~~~~a~~-~-g~-----~~~~l~e~~---~  163 (258)
                      ..++|+|+|+|.||+..++.|... +.+             |.+.|+++.+.+...+ . ++     ++.+.+++.   +
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            578999999999999999999764 333             8889999877654332 2 32     133445544   5


Q ss_pred             hCCeeeecc
Q psy16115        164 TVDIVVTAT  172 (258)
Q Consensus       164 ~aDvvi~~~  172 (258)
                      ++|+|+.|+
T Consensus       648 ~~DaVIsal  656 (1042)
T PLN02819        648 QVDVVISLL  656 (1042)
T ss_pred             CCCEEEECC
Confidence            799999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3mtg_A	444	Crystal Structure Of Human S-Adenosyl Homocysteine		2e-65
3gvp_A	435	Human Sahh-Like Domain Of Human Adenosylhomocystein		2e-64
3d64_A	494	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		1e-39
3n58_A	464	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		1e-38
1v8b_A	479	Crystal Structure Of A Hydrolase Length = 479		3e-34
3ond_A	488	Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Ho		3e-33
3dhy_A	495	Crystal Structures Of Mycobacterium Tuberculosis S-		5e-33
3ce6_A	494	Crystal Structure Of Mycobacterium Tuberculosis S-A		5e-33
3h9u_A	436	S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypa		6e-30
1b3r_A	431	Rat Liver S-Adenosylhomocystein Hydrolase Length =		1e-28
1xwf_A	431	K185n Mutated S-adenosylhomocysteine Hydrolase Leng		1e-28
3nj4_A	435	Fluoro-Neplanocin A In Human S-Adenosylhomocysteine		3e-28
1li4_A	432	Human S-Adenosylhomocysteine Hydrolase Complexed Wi		3e-28
1d4f_A	431	Crystal Structure Of Recombinant Rat-Liver D244e Mu		4e-28
3g1u_A	437	Crystal Structure Of Leishmania Major S- Adenosylho		8e-28
1a7a_A	432	Structure Of Human Placental S-adenosylhomocysteine		1e-25

>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine Hydrolase Protein Length = 444

Iteration: 1
 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 110/130 (84%), Positives = 122/130 (93%)
Query: 99  LKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKL 158
           LKR+TDVMFGGKQVV+CGYGEVGKGCC +LK LG ++YITEIDPICALQACMDGF VVKL
Sbjct: 215 LKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKL 274
Query: 159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
           NEVIR VD+V+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+VR
Sbjct: 275 NEVIRQVDVVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPELTWERVR 334
Query: 219 SQVDHVIWPD 228
           SQVDHVIWPD
Sbjct: 335 SQVDHVIWPD 344

>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3 Length = 435

Iteration: 1
 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 107/131 (81%), Positives = 122/131 (93%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            LKR+TD+MFGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VK
Sbjct: 209 GLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVK 268
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+V
Sbjct: 269 LNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERV 328
Query: 218 RSQVDHVIWPD 228
           RSQVDHVIWPD
Sbjct: 329 RSQVDHVIWPD 339

>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Burkholderia Pseudomallei Length = 494

Iteration: 1
 Score =  159 bits (403), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/131 (53%), Positives = 94/131 (71%), Gaps = 2/131 (1%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC QSL+GLG  +++TEIDPICALQA M+G+ VV 
Sbjct: 266 GIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVT 325
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           +       DI VTATGN +V+  +HM  M++  +VCN+GH ++EIDV S R     WE +
Sbjct: 326 MEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENI 383
Query: 218 RSQVDHVIWPD 228
           + QVDH+I+PD
Sbjct: 384 KPQVDHIIFPD 394

>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Brucella Melitensis In Ternary Complex With Nad And Adenosine, Orthorhombic Form Length = 464

Iteration: 1
 Score =  156 bits (394), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 87  NKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 146
           NK G  +     ++R TDVM  GK  V+CGYG+VGKG  QSL G G  + +TE+DPICAL
Sbjct: 225 NKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICAL 284
Query: 147 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 206
           QA MDGF VV L++   T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +
Sbjct: 285 QAAMDGFEVVTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAA 344
Query: 207 LRTPDLTWEKVRSQVDHVIWPD 228
           LR  +L W  V+ QVD + +PD
Sbjct: 345 LR--NLKWTNVKPQVDLIEFPD 364

>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase Length = 479

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/134 (52%), Positives = 92/134 (68%), Gaps = 1/134 (0%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            L R+TD +  GK VV+CGYG+VGKGC  S+KGLG  +YITEIDPICA+QA M+GF+VV 
Sbjct: 246 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVT 305
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSL-RTPDLTWEK 216
           L+E++   D  +T TGN +V+  EH+ KMKN  VV N+GH + EI VN L     +  E 
Sbjct: 306 LDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIEN 365
Query: 217 VRSQVDHVIWPDVN 230
           V+ QVD +  P+ N
Sbjct: 366 VKPQVDRITLPNGN 379

>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Homocysteine Hydrolase In Complex With Adenosine Length = 488

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/134 (48%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            L R+TDVM  GK  V+ GYG+VGKGC  +LK  G  + +TEIDPICALQA M+G  V+ 
Sbjct: 254 GLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLT 313
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEK 216
           L +V+   DI VT TGNK+++  +HM KMKN  +VCN+GH + EID+  L T P +    
Sbjct: 314 LEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRIT 373
Query: 217 VRSQVDHVIWPDVN 230
           ++ Q D  ++P+ N
Sbjct: 374 IKPQTDRWVFPETN 387

>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis S-Adenosyl- Homocysteine Hydrolase In Ternary Complex With Substrate An Inhibitors Length = 495

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 89/136 (65%)
Query: 87  NKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 146
           NK G        + R TD + GGK+V++CGYG+VGKGC +++KG G  + +TEIDPI AL
Sbjct: 253 NKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 312
Query: 147 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 206
           QA M+GF VV + E I   DIVVTATGNK+++  EH+  MK+  ++ N+GH + EID+  
Sbjct: 313 QAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAG 372
Query: 207 LRTPDLTWEKVRSQVD 222
           L     T   V+ QVD
Sbjct: 373 LERSGATRVNVKPQVD 388

>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex With Nad And Adenosine Length = 494

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/136 (47%), Positives = 89/136 (65%)
Query: 87  NKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL 146
           NK G        + R TD + GGK+V++CGYG+VGKGC +++KG G  + +TEIDPI AL
Sbjct: 252 NKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 311
Query: 147 QACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNS 206
           QA M+GF VV + E I   DIVVTATGNK+++  EH+  MK+  ++ N+GH + EID+  
Sbjct: 312 QAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAG 371
Query: 207 LRTPDLTWEKVRSQVD 222
           L     T   V+ QVD
Sbjct: 372 LERSGATRVNVKPQVD 387

>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma Brucei Length = 436

Iteration: 1
 Score =  127 bits (319), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 84/126 (66%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK   +CGYG+VGKGC  +L+G G  + +TE+DPI ALQA M+G+ V+ 
Sbjct: 200 GIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLL 259
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           + +V+    I VT TGN +++T EH  +M++  +VCN+GH +TEI V  L+       +V
Sbjct: 260 VEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEV 319
Query: 218 RSQVDH 223
           + QVD 
Sbjct: 320 KPQVDR 325

>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase Length = 431

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 5/147 (3%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  
Sbjct: 201 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 260
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E  +  +I VT TG  +++   H ++MK+  +VCN+GH + EIDV  L    +    +
Sbjct: 261 MDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 320
Query: 218 RSQVDHVIWPDVNLKNNTVIDLFRKPK 244
           + QVD  +     LKN   I L  + +
Sbjct: 321 KPQVDRYL-----LKNGHRIILLAEGR 342

>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/147 (42%), Positives = 90/147 (61%), Gaps = 5/147 (3%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  
Sbjct: 201 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 260
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E  +  +I VT TG  +++   H ++MK+  +VCN+GH + EIDV  L    +    +
Sbjct: 261 MDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 320
Query: 218 RSQVDHVIWPDVNLKNNTVIDLFRKPK 244
           + QVD  +     LKN   I L  + +
Sbjct: 321 KPQVDRYL-----LKNGHRIILLAEGR 342

>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine Hydrolase Length = 435

Iteration: 1
 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 82/125 (65%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  
Sbjct: 205 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 264
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E  +  +I VT TG  +++   H ++MK+  +VCN+GH + EIDV  L    +    +
Sbjct: 265 MDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 324
Query: 218 RSQVD 222
           + QVD
Sbjct: 325 KPQVD 329

>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With Neplanocin Length = 432

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 82/125 (65%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  
Sbjct: 202 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 261
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E  +  +I VT TG  +++   H ++MK+  +VCN+GH + EIDV  L    +    +
Sbjct: 262 MDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 321
Query: 218 RSQVD 222
           + QVD
Sbjct: 322 KPQVD 326

>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S- Adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 5/147 (3%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC Q+L+G G  + ITEI+PI ALQA M+G+ V  
Sbjct: 201 GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTT 260
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E  +  +I VT TG  +++   H ++MK+  +VCN+GH + EIDV  L    +    +
Sbjct: 261 MDEACKEGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 320
Query: 218 RSQVDHVIWPDVNLKNNTVIDLFRKPK 244
           + QVD  +     LKN   I L  + +
Sbjct: 321 KPQVDRYL-----LKNGHRIILLAEGR 342

>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S- Adenosylhomocysteine Hydrolase Length = 437

Iteration: 1
 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 80/125 (64%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK   +CGYG+VGKGC  +L+  G  + +TE+DPI ALQA M+G+ V  
Sbjct: 201 GIKRATDVMIAGKTCCVCGYGDVGKGCAAALRAFGARVVVTEVDPINALQASMEGYQVAL 260
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           + +V+    I VT TGN +++T +H   M++  +VCN+GH +TEI V  L        ++
Sbjct: 261 VEDVMADAHIFVTTTGNDDIITSDHFPHMRDDAIVCNIGHFDTEIQVGWLEANAKEHVEI 320
Query: 218 RSQVD 222
           + QVD
Sbjct: 321 KPQVD 325

>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine Hydrolase: Determination Of A 30 Selenium Atom Substructure From Data At A Single Wavelength Length = 432

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 78/125 (62%)
Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDV   GK  V+ GYG+VGKGC Q+L+G G  + ITEIDPI ALQA  +G+ V  
Sbjct: 202 GIKRATDVXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAXEGYEVTT 261
Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
            +E  +  +I VT TG  +++   H ++ K+  +VCN+GH + EIDV  L    +    +
Sbjct: 262 XDEACQEGNIFVTTTGCIDIILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 321
Query: 218 RSQVD 222
           + QVD
Sbjct: 322 KPQVD 326

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	6e-82
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	2e-27
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	2e-79
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	3e-25
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	2e-74
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	2e-32
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	2e-69
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	4e-32
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	1e-68
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	3e-33
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	2e-68
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	2e-33
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	2e-65
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	7e-34
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-18
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	5e-08
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-05
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	3e-05
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	4e-05
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	8e-05
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	4e-04
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	5e-04
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	8e-04
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	8e-04
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	8e-04
3c85_A	183	Putative glutathione-regulated potassium-efflux S	9e-04

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  251 bits (643), Expect = 6e-82
 Identities = 115/178 (64%), Positives = 135/178 (75%), Gaps = 28/178 (15%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            LKR+TD+MFGGKQVV+CGYGEVGKGCC +LK +G ++Y+TEIDPICALQACMDGF +VK
Sbjct: 209 GLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVK 268

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           LNEVIR VDIV+T TGNKNVVTREH+D+MKN C+VCNMGHSNTEIDV SLRTP+LTWE+V
Sbjct: 269 LNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERV 328

Query: 218 RSQVDHVIWPD------------VNLKNNTV----------------IDLFRKPKSRL 247
           RSQVDHVIWPD            +NL  +TV                I+L+  P+ R 
Sbjct: 329 RSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRY 386

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  108 bits (271), Expect = 2e-27
 Identities = 58/64 (90%), Positives = 61/64 (95%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           QALALIEL+NAP GRYK DVYLLPKKMDEYVASLHLPTFDAHLTEL+DEQAKY+GLNK G
Sbjct: 371 QALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNG 430

Query: 91  PFKP 94
           PFKP
Sbjct: 431 PFKP 434

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  244 bits (626), Expect = 2e-79
 Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 12/150 (8%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK   +CGYG+VGKGC  +L+G G  + +TE+DPI ALQA M+G+ V+ 
Sbjct: 200 GIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLL 259

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           + +V+    I VT TGN +++T EH  +M++  +VCN+GH +TEI V  L+       +V
Sbjct: 260 VEDVVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEV 319

Query: 218 RSQVDHVIWPD------------VNLKNNT 235
           + QVD     +            VNL   +
Sbjct: 320 KPQVDRYTMANGRHIILLAEGRLVNLGCAS 349

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  102 bits (256), Expect = 3e-25
 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 5/72 (6%)

Query: 31  QALALIELF-NAPAGRY----KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMG 85
           Q LA IEL+ N   G+Y    K+ VY LPKK+DE VA+LHL    A LT+L+ +QA+Y+ 
Sbjct: 363 QVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYIN 422

Query: 86  LNKAGPFKPSYY 97
               GPFKP +Y
Sbjct: 423 CPVDGPFKPDHY 434

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  232 bits (594), Expect = 2e-74
 Identities = 77/150 (51%), Positives = 99/150 (66%), Gaps = 14/150 (9%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            ++R TDVM  GK  V+CGYG+VGKG  QSL G G  + +TE+DPICALQA MDGF VV 
Sbjct: 236 GIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVT 295

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           L++   T DIVVT TGNK+V+T +HM KMK+ C+V N+GH + EI V +LR  +L W  V
Sbjct: 296 LDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALR--NLKWTNV 353

Query: 218 RSQVDHVIWPD------------VNLKNNT 235
           + QVD + +PD            +NL N T
Sbjct: 354 KPQVDLIEFPDGKRLILLSEGRLLNLGNAT 383

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  122 bits (308), Expect = 2e-32
 Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           Q L  IELF      YK++VY+LPK +DE VA LHL    A LT LS+EQA Y+G+   G
Sbjct: 397 QVLGQIELFTRT-DAYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQG 455

Query: 91  PFKPSYY 97
           PFK  +Y
Sbjct: 456 PFKSEHY 462

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  221 bits (564), Expect = 2e-69
 Identities = 67/151 (44%), Positives = 93/151 (61%), Gaps = 13/151 (8%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            + R TD + GGK+V++CGYG+VGKGC +++KG G  + +TEIDPI ALQA M+GF VV 
Sbjct: 263 GINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVT 322

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           + E I   DIVVTATGNK+++  EH+  MK+  ++ N+GH + EID+  L     T   V
Sbjct: 323 VEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNV 382

Query: 218 RSQVDHVIWPD-------------VNLKNNT 235
           + QVD   + D             +NL N T
Sbjct: 383 KPQVDLWTFGDTGRSIIVLSEGRLLNLGNAT 413

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  121 bits (306), Expect = 4e-32
 Identities = 30/67 (44%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           Q +A IEL+      Y ++VY LPK +DE VA +H+     HLT+L+ EQA+Y+G++  G
Sbjct: 427 QTIAQIELWTKN-DEYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEG 485

Query: 91  PFKPSYY 97
           P+KP +Y
Sbjct: 486 PYKPDHY 492

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  218 bits (558), Expect = 1e-68
 Identities = 74/150 (49%), Positives = 98/150 (65%), Gaps = 14/150 (9%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC QSL+GLG  +++TEIDPICALQA M+G+ VV 
Sbjct: 266 GIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVT 325

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           +       DI VTATGN +V+  +HM  M++  +VCN+GH ++EIDV S R     WE +
Sbjct: 326 MEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTR--QYQWENI 383

Query: 218 RSQVDHVIWPD------------VNLKNNT 235
           + QVDH+I+PD            VNL   T
Sbjct: 384 KPQVDHIIFPDGKRVILLAEGRLVNLGCAT 413

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  124 bits (314), Expect = 3e-33
 Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           Q LA IELF    G Y + VY+LPK +DE VA LHL    A L+ELSD+QA Y+G++KAG
Sbjct: 427 QTLAQIELFTRG-GEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAG 485

Query: 91  PFKPSYY 97
           PFKP +Y
Sbjct: 486 PFKPDHY 492

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  217 bits (555), Expect = 2e-68
 Identities = 75/181 (41%), Positives = 102/181 (56%), Gaps = 30/181 (16%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            L R+TD +  GK VV+CGYG+VGKGC  S+KGLG  +YITEIDPICA+QA M+GF+VV 
Sbjct: 246 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVT 305

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR-TPDLTWEK 216
           L+E++   D  +T TGN +V+  EH+ KMKN  VV N+GH + EI VN L     +  E 
Sbjct: 306 LDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIEN 365

Query: 217 VRSQVDHVIWPD------------VNLKNNT-----------------VIDLFRKPKSRL 247
           V+ QVD +  P+            +NL   T                  +DL++   +  
Sbjct: 366 VKPQVDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNK 425

Query: 248 Y 248
           Y
Sbjct: 426 Y 426

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  125 bits (315), Expect = 2e-33
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 31  QALALIELF-NAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
           Q  A ++L+ N    +Y++ VYLLPK +DE VA  HL   +A LTEL D Q +++G+NK+
Sbjct: 410 QTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKS 469

Query: 90  GPFKPSYY 97
           GPFK + Y
Sbjct: 470 GPFKSNEY 477

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  209 bits (535), Expect = 2e-65
 Identities = 70/182 (38%), Positives = 99/182 (54%), Gaps = 31/182 (17%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            L R+TDVM  GK  V+ GYG+VGKGC  +LK  G  + +TEIDPICALQA M+G  V+ 
Sbjct: 254 GLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLT 313

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEK 216
           L +V+   DI VT TGNK+++  +HM KMKN  +VCN+GH + EID+  L T P +    
Sbjct: 314 LEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRIT 373

Query: 217 VRSQVDHVIWPD-------------VNLKNNT-----------------VIDLFRKPKSR 246
           ++ Q D  ++P+             +NL   T                  ++L+ +  S 
Sbjct: 374 IKPQTDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSG 433

Query: 247 LY 248
            Y
Sbjct: 434 KY 435

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  126 bits (319), Expect = 7e-34
 Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 31  QALALIELFN-APAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
           Q +A +EL+N   +G+Y+  VY+LPK +DE VA+LHL    A LT+LS +QA Y+ +   
Sbjct: 419 QVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVE 478

Query: 90  GPFKPSYY 97
           GP+KP +Y
Sbjct: 479 GPYKPFHY 486

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 80.8 bits (199), Expect = 3e-18
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 101 RSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---K 157
           + TD    G  V + G G VG    +    LG  + +   +     +    G       K
Sbjct: 147 QHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISK 206

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG 196
             + +R VD+ +  T    VVT   + +M +   V ++ 
Sbjct: 207 AAQELRDVDVCIN-TIPALVVTANVLAEMPSHTFVIDLA 244

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN--- 159
           TD    G QV + G G  G    ++   LG  + +         +    G      +   
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELK 210

Query: 160 EVIRTVDIVVTATGNKNVVTREHMDKMKNGCVV 192
           E ++ +DI +    +  ++ +  +  M    ++
Sbjct: 211 EHVKDIDICINTIPSM-ILNQTVLSSMTPKTLI 242

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 19/99 (19%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYI----TEIDPICALQACMDGFSVVKLNEVIR 163
           G+Q+++ G G++G+        LG  VI +       D         +  +     + + 
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH------FHETVAFTATADALA 190

Query: 164 TVDIVVTA------TGNKNVVTREHMDKMKNGCVVCNMG 196
           T + +V A      T   ++ + E   + K   ++ N+G
Sbjct: 191 TANFIVNALPLTPTT--HHLFSTELFQQTKQQPMLINIG 227

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYIT--EIDPICALQACMDGFSVV--KLNEVIRT 164
           G +++L G G +              + +    ID + A     +   V+   ++ +I+ 
Sbjct: 21  GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKN 80

Query: 165 VDIVVTATGNKN-VVTREHMDKMK 187
            D+++TAT +K  +V    +   K
Sbjct: 81  NDVIITATSSKTPIVEERSLMPGK 104

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 14/106 (13%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV 156
            L          + + + G G VG      L+ LG   +     DP     A  D     
Sbjct: 108 MLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLL---CDPP--RAARGDEGDFR 162

Query: 157 KLNEVIRTVDIV-----VTATGN---KNVVTREHMDKMKNGCVVCN 194
            L+E+++  D++     +   G     ++     + ++K G ++ N
Sbjct: 163 TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 22/189 (11%), Positives = 58/189 (30%), Gaps = 30/189 (15%)

Query: 37  ELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDA-HLTELSDEQAKYMGLNKAGPFKPS 95
           E +          +  +PK +++ +  L  P  D                + +    +  
Sbjct: 126 EWWYDDP----KYLVKIPKSIED-IGILAQPLADIEK------------SIEEILEVQKR 168

Query: 96  YYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFS 154
                     +   ++V++ G G +G       +  G  V      +P    Q  ++   
Sbjct: 169 VPVWTCDDGTL-NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK 227

Query: 155 VV---------KLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMG-HSNTEIDV 204
                      KL + +   D+++ ATG    +    +  +    V+   G  ++  + +
Sbjct: 228 TNYYNSSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPL 287

Query: 205 NSLRTPDLT 213
           +     ++ 
Sbjct: 288 DYKTLQEIV 296

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 166
           G K V + G  G++G    + +      +   EI P    +    G  +   +  I   D
Sbjct: 10  GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEAD 69

Query: 167 IVVTATGNKNV--VTREHMDKMKNGCVVCNMG 196
           +VV A  +  +  V  + + +++ G +V  + 
Sbjct: 70  VVVLALPDNIIEKVAEDIVPRVRPGTIVLILD 101

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A Length = 234

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 11/74 (14%)

Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN----EV---- 161
           + VV+CG+ E    C + L+G      +   D     +    G + V  +          
Sbjct: 10  RHVVICGWSESTLECLRELRGSEVF--VLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 67

Query: 162 -IRTVDIVVTATGN 174
            +R    V+    +
Sbjct: 68  NVRGARAVIVDLES 81

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 18/99 (18%), Positives = 40/99 (40%), Gaps = 19/99 (19%)

Query: 109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYIT----EIDPICALQACMDGFSVVKLNEVIR 163
           G+ +++ G G +G+    + K  G  V+ ++    E          +       LN+++ 
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF----DQVYQLP--ALNKMLA 193

Query: 164 TVDIVV------TATGNKNVVTREHMDKMKNGCVVCNMG 196
             D++V        T   ++ T    +  K G ++ N+G
Sbjct: 194 QADVIVSVLPATRET--HHLFTASRFEHCKPGAILFNVG 230

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 16/107 (14%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFSV 155
           ++          +   + G G+VG    + L+GLG   ++     DP    QA       
Sbjct: 105 AMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVC----DPP--RQAREPDGEF 158

Query: 156 VKLNEVIRTVDIV-----VTATGN---KNVVTREHMDKMKNGCVVCN 194
           V L  ++   D++     +   G    ++++    +  ++ G  + N
Sbjct: 159 VSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} Length = 141

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 13/131 (9%), Positives = 35/131 (26%), Gaps = 27/131 (20%)

Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK--------LNEV 161
            + ++ G    G G  + L   G  +   +           +GF  V            +
Sbjct: 7   YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSL 66

Query: 162 -IRTVDIVVTATGN--KNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV- 217
            +  V  V+    +   N+   + +  + +   +               R      ++  
Sbjct: 67  DLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIV--------------RVSSPKKKEEF 112

Query: 218 -RSQVDHVIWP 227
             +  + V+  
Sbjct: 113 EEAGANLVVLV 123

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} Length = 183

 Score = 38.2 bits (89), Expect = 9e-04
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 11/78 (14%)

Query: 108 GGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVVKLN------- 159
           G  QV++ G G +G G    L+   G +    EI    A Q   +G +V+  +       
Sbjct: 38  GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFW 97

Query: 160 ---EVIRTVDIVVTATGN 174
                   V +V+ A  +
Sbjct: 98  ERILDTGHVKLVLLAMPH 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.92
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.91
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.91
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.91
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.91
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.91
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.9
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.9
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.9
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.89
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.89
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.89
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.89
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.89
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.89
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.88
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.88
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.88
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.87
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.87
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.87
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.87
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.87
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.86
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.86
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.86
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.85
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.85
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.85
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.84
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.84
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.83
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.83
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.83
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.83
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.82
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.82
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.81
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.79
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.78
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.7
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.62
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.62
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.5
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	99.44
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	99.43
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	99.42
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.41
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	99.41
3l07_A	285	Bifunctional protein fold; structural genomics, ID	99.4
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	99.39
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	99.39
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.38
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	99.38
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.37
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	99.37
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.36
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.33
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	99.33
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.32
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.3
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.3
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.28
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.25
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.24
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.24
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.21
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.21
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.2
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.2
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.19
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.19
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.17
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.17
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.17
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.15
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.15
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.15
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.14
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.13
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.13
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.13
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.12
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.11
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.1
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.09
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.08
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.05
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.03
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.0
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.99
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	98.99
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	98.99
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	98.98
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.98
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.97
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	98.97
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	98.97
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	98.96
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.96
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.96
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.95
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.95
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	98.95
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.95
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.93
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	98.93
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	98.92
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.92
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.92
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.91
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.9
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	98.9
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	98.9
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.88
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	98.88
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.87
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.87
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	98.86
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.85
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	98.85
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	98.85
4eye_A	342	Probable oxidoreductase; structural genomics, niai	98.83
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.82
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.82
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.81
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.81
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.81
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.8
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.79
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.78
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.75
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.74
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.74
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.73
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	98.73
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.73
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	98.72
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	98.72
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	98.72
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.72
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	98.71
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.7
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.7
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.7
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.7
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.7
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.69
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	98.68
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.68
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.68
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	98.67
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	98.67
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.11
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.65
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.65
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.64
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.63
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.63
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.63
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	98.61
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.6
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	98.59
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	98.58
3gms_A	340	Putative NADPH:quinone reductase; structural genom	98.58
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.57
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.56
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.55
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.53
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.53
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	98.5
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	98.49
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.49
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	98.48
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	98.48
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	98.47
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	98.47
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.47
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	98.46
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	98.46
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.45
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.44
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	98.43
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.42
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.41
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.39
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.37
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.37
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.37
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.35
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.34
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.34
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.33
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.32
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.32
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.32
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.31
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.31
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.31
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.3
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.29
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.29
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	98.29
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.29
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.28
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	98.27
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.27
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.27
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	98.27
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.27
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.26
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.24
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.24
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.23
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	98.23
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.23
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.22
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.22
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.22
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.21
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.21
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.2
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.19
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.19
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.19
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.18
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.16
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.15
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.15
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.14
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.14
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.1
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	98.09
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.08
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	98.08
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.07
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.07
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.06
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.05
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.04
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.03
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.01
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.99
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.98
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	97.98
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.97
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.94
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.94
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	97.92
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.9
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.9
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.9
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.89
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.83
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.82
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.78
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.76
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.76
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.74
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.74
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.7
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.7
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.7
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.66
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.61
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.61
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.6
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.59
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.58
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.57
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.56
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.56
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.55
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.54
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.53
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.53
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.52
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.52
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.52
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.51
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.51
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.51
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.51
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.49
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.48
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.47
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.47
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.45
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.45
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	97.44
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.43
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	97.43
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.43
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.41
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.41
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.4
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.4
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.4
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.39
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.39
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.38
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.36
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.36
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.35
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.35
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.33
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.32
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.32
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.32
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	97.31
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.31
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.31
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.29
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.28
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.27
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.26
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.26
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.25
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.24
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.24
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.22
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.21
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.21
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.21
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.2
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.19
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.18
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.18
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.17
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.17
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.15
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.15
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.15
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.15
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.15
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.13
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.12
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.12
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.12
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.12
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.11
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.1
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.1
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.1
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.08
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.07
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.07
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.07
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.07
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.06
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.06
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.06
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	97.05
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.05
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.01
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.0
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.99
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.99
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.98
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.97
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.97
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.97
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.97
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.96
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.95
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.94
4had_A	350	Probable oxidoreductase protein; structural genomi	96.92
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.92
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	96.92
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.9
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.88
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.86
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.86
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.86
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.86
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.86
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.85
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.85
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.84
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.84
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.84
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.83
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.83
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.82
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.81
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.81
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.81
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.8
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.79
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.78
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.77
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.77
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.76
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.76
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.75
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.74
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.74
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.74
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.74
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.73
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.72
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.71
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	96.7
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.66
1lnq_A	336	MTHK channels, potassium channel related protein;	96.65
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.64
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.64
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.64
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.63
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.63
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.63
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.61
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.6
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	96.6
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.59
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.59
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.57
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.57
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.55
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.54
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.53
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.52
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.52
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.51
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.51
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.5
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	96.49
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.49
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.48
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.48
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.48
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.48
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.48
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.48
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.47
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.47
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.46
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.45
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.45
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.45
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.45
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	96.44
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.44
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.44
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.43
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.43
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.42
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.42
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.4
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.4
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.4
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.39
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.39
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	96.39
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.39
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.38
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.38
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.37
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.37
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	96.36
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.35
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.35
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.34
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.34
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.33
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.32
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.32
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.31
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.31
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.31
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.3
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.26
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.26
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.26
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.25
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.25
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.24
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.24
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.23
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.22
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	96.21
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.2
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.2
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.2
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.19
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	96.19
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.19
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.19
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.19
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.18
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.18
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.18
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.17
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.17
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.17
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.17
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.16

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.92  E-value=5.4e-26  Score=205.20  Aligned_cols=163  Identities=13%  Similarity=0.138  Sum_probs=136.4

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|+++|++.+.++||+++.+++...|++.....    ..+.|.|....    ...+.++.|+|+||+|+|.||+.+|+
T Consensus        87 gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~----~~~~~~~~~~~----~~~~~~l~g~tvGIiG~G~IG~~va~  158 (334)
T 3kb6_A           87 GILVTHIPAYSPESVAEHTFAMILTLVKRLKRIED----RVKKLNFSQDS----EILARELNRLTLGVIGTGRIGSRVAM  158 (334)
T ss_dssp             TCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCCCG----GGCBCCGGGSEEEEECCSHHHHHHHH
T ss_pred             CCEEEECCCcCcHHHHHHHHHHHHHHhhccccccc----ccccccccccc----ccccceecCcEEEEECcchHHHHHHH
Confidence            88999999999999999999998888888765332    22334443221    11245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      ++++||++|++||+.+..  ...+.++...++++++++||+|++|    ..|.++|+++.|+.||+|+++||+|||   |
T Consensus       159 ~~~~fg~~v~~~d~~~~~--~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVd  236 (334)
T 3kb6_A          159 YGLAFGMKVLCYDVVKRE--DLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVD  236 (334)
T ss_dssp             HHHHTTCEEEEECSSCCH--HHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBC
T ss_pred             hhcccCceeeecCCccch--hhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcccccc
Confidence            999999999999987643  3345677888999999999999998    378899999999999999999999999   9


Q ss_pred             hhhchhhhcCCCceeeeecc
Q psy16115        200 TEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~~~  219 (258)
                      +++++++|++|+|...++..
T Consensus       237 e~aL~~aL~~g~i~gA~LDV  256 (334)
T 3kb6_A          237 TDALYRAYQRGKFSGLGLDV  256 (334)
T ss_dssp             HHHHHHHHHTTCEEEEEESC
T ss_pred             HHHHHHHHHhCCceEEEEeC
Confidence            99999999999998776643

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.91  E-value=7.6e-25  Score=198.28  Aligned_cols=192  Identities=16%  Similarity=0.222  Sum_probs=147.9

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|+++|+..+.++||+++.+++...|++.....    ..+.|.|.....  ....+.++.|+||||||+|.||+.+|+
T Consensus       117 gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~----~~r~g~W~~~~~--~~~~g~~l~gktvGIIGlG~IG~~vA~  190 (345)
T 4g2n_A          117 GIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADR----MVRSGSWPGWGP--TQLLGMGLTGRRLGIFGMGRIGRAIAT  190 (345)
T ss_dssp             TCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHH----HHHTTCCCCCCT--TTTCBCCCTTCEEEEESCSHHHHHHHH
T ss_pred             CEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCcccCc--ccccccccCCCEEEEEEeChhHHHHHH
Confidence            89999999999999999999999888888765433    234556642211  011256789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      ++++||++|++||+++.....+  .++... ++++++++||+|++|.    .|.++++++.|+.||+|+++||+||+   
T Consensus       191 ~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~v  268 (345)
T 4g2n_A          191 RARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLI  268 (345)
T ss_dssp             HHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGB
T ss_pred             HHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchh
Confidence            9999999999999987554333  266665 8999999999999984    47789999999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      |+++++++|++|+|...++..+..+ +.+...+-+...+  +-+||.+.++
T Consensus       269 de~aL~~aL~~g~i~gA~LDVf~~E-P~~~~pL~~~~nv--ilTPHia~~t  316 (345)
T 4g2n_A          269 NDDALIEALRSKHLFAAGLDVFANE-PAIDPRYRSLDNI--FLTPHIGSAT  316 (345)
T ss_dssp             CHHHHHHHHHHTSEEEEEESCCTTT-TSCCTTGGGCTTE--EECCSCTTCB
T ss_pred             CHHHHHHHHHhCCceEEEecCCCCC-CCCCchHHhCCCE--EEcCccCcCC
Confidence            8999999999999977666433222 2334444443333  2368877653

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.91  E-value=3.8e-24  Score=194.86  Aligned_cols=190  Identities=15%  Similarity=0.216  Sum_probs=145.4

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCC--CCcchhhhccCcCcccCCCEEEEEcCchHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP--FKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGC  124 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~  124 (258)
                      ++.|++.|+..+.++||+++.+++...|++.......    +.|.  |....    ...+.++.|+||||||+|.||+.+
T Consensus       120 GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~----r~g~~~w~~~~----~~~~~~l~gktvGIIGlG~IG~~v  191 (365)
T 4hy3_A          120 GIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAF----QEGTELWGGEG----NASARLIAGSEIGIVGFGDLGKAL  191 (365)
T ss_dssp             CCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHH----HHTCCCCSSSS----TTSCCCSSSSEEEEECCSHHHHHH
T ss_pred             CeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHH----HcCCccccccc----cccccccCCCEEEEecCCcccHHH
Confidence            8999999999999999999999999999988654332    2233  32110    112467899999999999999999


Q ss_pred             HHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        125 CQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       125 a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      |+.+++||++|++||+++. ...+...|+...++++++++||+|++|    ..|.++++++.|+.||+|+++||+|||  
T Consensus       192 A~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~  270 (365)
T 4hy3_A          192 RRVLSGFRARIRVFDPWLP-RSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADV  270 (365)
T ss_dssp             HHHHTTSCCEEEEECSSSC-HHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGG
T ss_pred             HHhhhhCCCEEEEECCCCC-HHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCch
Confidence            9999999999999999863 344556788888999999999999998    357889999999999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeeccCcceeecC-CCccCCCceeEEecCCChhHHH
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVRSQVDHVIWP-DVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                       |++++.++|++|+|. .++..+..+ +++ .+.+-....+  +-+||.+.+.
T Consensus       271 vde~aL~~aL~~g~i~-aaLDV~~~E-Pl~~~~pL~~~~nv--ilTPHia~~t  319 (365)
T 4hy3_A          271 VDFDALMAAVSSGHIV-AASDVYPEE-PLPLDHPVRSLKGF--IRSAHRAGAL  319 (365)
T ss_dssp             SCHHHHHHHHHTTSSE-EEESCCSSS-SCCTTCGGGTCTTE--EECCSCSSCC
T ss_pred             hCHHHHHHHHHcCCce-EEeeCCCCC-CCCCCChhhcCCCE--EECCccccCH
Confidence             899999999999998 565433322 332 3344433333  2257776543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.91  E-value=1e-24  Score=196.53  Aligned_cols=166  Identities=16%  Similarity=0.175  Sum_probs=138.1

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|+++|++.+.++||+++.+++...|++......    .+.|.|.....   ...+.++.|+||||||+|.||+.+|+
T Consensus        90 gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~----~~~g~w~~~~~---~~~~~~l~g~tvGIIG~G~IG~~vA~  162 (330)
T 4e5n_A           90 GVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF----VRSGKFRGWQP---RFYGTGLDNATVGFLGMGAIGLAMAD  162 (330)
T ss_dssp             TCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHH----HHTTCCCSCCS---CCCCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             CcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHH----HHhCCccccCc---cccCCccCCCEEEEEeeCHHHHHHHH
Confidence            899999999999999999999999888888664432    23444532110   12256789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      .++++|++|++||+++.+...+...|+...++++++++||+|++|.    .+.++++++.|+.||+|+++||+||+   |
T Consensus       163 ~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd  242 (330)
T 4e5n_A          163 RLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVD  242 (330)
T ss_dssp             HTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBC
T ss_pred             HHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhC
Confidence            9999999999999988555555566777779999999999999983    57889999999999999999999999   8


Q ss_pred             hhhchhhhcCCCceeeeecc
Q psy16115        200 TEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~~~  219 (258)
                      ++++.++|+++++...++..
T Consensus       243 ~~aL~~aL~~g~i~gA~lDV  262 (330)
T 4e5n_A          243 EAAVLAALERGQLGGYAADV  262 (330)
T ss_dssp             HHHHHHHHHHTSEEEEEESC
T ss_pred             HHHHHHHHHhCCccEEEecc
Confidence            99999999999997665543

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.91  E-value=1.4e-24  Score=197.07  Aligned_cols=193  Identities=16%  Similarity=0.136  Sum_probs=149.5

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|+++|++.+.++||+++.+++...|++.....    ..+.|.|......   ..+.++.|++|||||+|.||+.+|+
T Consensus       109 gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~W~~~~~~---~~~~~l~gktvGIIG~G~IG~~vA~  181 (351)
T 3jtm_A          109 GLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYN----QVVKGEWNVAGIA---YRAYDLEGKTIGTVGAGRIGKLLLQ  181 (351)
T ss_dssp             TCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHH----HHHTTCCCHHHHH---TTCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             CeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHH----HHHcCCCcccccc---CCcccccCCEEeEEEeCHHHHHHHH
Confidence            89999999999999999999999888888765432    2356677532111   1245689999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      .++++|++|++||+++...+.+.+.|+... ++++++++||+|++|.    .|.++++++.|+.||+|+++||+||+   
T Consensus       182 ~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  261 (351)
T 3jtm_A          182 RLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIM  261 (351)
T ss_dssp             HHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGB
T ss_pred             HHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhh
Confidence            999999999999998766555666677655 8999999999999983    67889999999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccCcceeec-CCCccCCCceeEEecCCChhHHH
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQVDHVIW-PDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      |++++.++|++|++...++..+..+ ++ +.+++-+...+  +-+||.+.++
T Consensus       262 de~aL~~aL~~g~i~ga~lDV~~~E-P~~~~~pL~~~~nv--ilTPHia~~t  310 (351)
T 3jtm_A          262 ERQAVVDAVESGHIGGYSGDVWDPQ-PAPKDHPWRYMPNQ--AMTPHTSGTT  310 (351)
T ss_dssp             CHHHHHHHHHHTSEEEEEESCCSSS-SCCTTCGGGTSTTB--CCCCSCGGGS
T ss_pred             CHHHHHHHHHhCCccEEEeCCCCCC-CCCCCChhhcCCCE--EECCcCCCCC
Confidence            8999999999999976665433222 22 22333322222  2368866543

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.90  E-value=4.5e-24  Score=193.85  Aligned_cols=194  Identities=14%  Similarity=0.132  Sum_probs=148.1

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcch-----hhhccCcCcccCCCEEEEEcCchHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSY-----YSLKRSTDVMFGGKQVVLCGYGEVG  121 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~l~g~~V~IiG~G~IG  121 (258)
                      ++.|++.|++ +.++||+++.+++...|++......    .+.|.|....     .......+.++.|+||||||+|.||
T Consensus        98 gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~----~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG  172 (352)
T 3gg9_A           98 GVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVAS----LKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIG  172 (352)
T ss_dssp             TCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHH----HHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHH
T ss_pred             CeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHH----HHcCCCCcccccccccccccccCccCCCCEEEEEeECHHH
Confidence            8899999999 9999999999999898988654432    3445564321     0000112467899999999999999


Q ss_pred             HHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecC
Q psy16115        122 KGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       122 ~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg  196 (258)
                      +.+|+.++++|++|++||+++. ...+...|++.. ++++++++||+|++|.    .+.++++++.|+.||+|+++||+|
T Consensus       173 ~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          173 QLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             HHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             HHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence            9999999999999999998864 344566788766 8999999999999983    577899999999999999999999


Q ss_pred             CC---ChhhchhhhcCCCceeeeeccCcceeec-CCCccCCCceeEEecCCChhHHH
Q psy16115        197 HS---NTEIDVNSLRTPDLTWEKVRSQVDHVIW-PDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       197 ~~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      |+   |++++.++|++|++...++..+..+ ++ +...+-+...+  +-+||.++++
T Consensus       252 Rg~~vd~~aL~~aL~~g~i~gA~lDV~~~E-Pl~~~~pL~~~~nv--ilTPHia~~t  305 (352)
T 3gg9_A          252 RAELVEENGMVTALNRGRPGMAAIDVFETE-PILQGHTLLRMENC--ICTPHIGYVE  305 (352)
T ss_dssp             CGGGBCTTHHHHHHHHTSSSEEEECCCSSS-CCCSCCGGGGCTTE--EECCSCTTCB
T ss_pred             CchhhcHHHHHHHHHhCCccEEEecccCCC-CCCCCChhhcCCCE--EECCCCCCCC
Confidence            99   8999999999999976665433322 22 23334333333  2368877654

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.90  E-value=2.8e-24  Score=192.98  Aligned_cols=188  Identities=14%  Similarity=0.191  Sum_probs=144.3

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|++.+.++||+++.+++...|++.....    ..+.|.|...       .+.++.|+||||||+|.||+.+|+
T Consensus        89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~W~~~-------~~~~l~g~tvGIIGlG~IG~~vA~  157 (324)
T 3hg7_A           89 DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYRE----QQKQRLWQSH-------PYQGLKGRTLLILGTGSIGQHIAH  157 (324)
T ss_dssp             SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCCC-------CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHH----HHhhCCCcCC-------CCcccccceEEEEEECHHHHHHHH
Confidence            79999999999999999999999988888865433    2345667532       235689999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      .++++|++|++||+++..... ...+....++++++++||+|++|    ..|.++++++.|+.||+|+++||+||+   |
T Consensus       158 ~l~~~G~~V~~~dr~~~~~~~-~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vd  236 (324)
T 3hg7_A          158 TGKHFGMKVLGVSRSGRERAG-FDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN  236 (324)
T ss_dssp             HHHHTTCEEEEECSSCCCCTT-CSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBC
T ss_pred             HHHhCCCEEEEEcCChHHhhh-hhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhC
Confidence            999999999999998743211 11122356899999999999998    357889998999999999999999999   8


Q ss_pred             hhhchhhhcCCCceeeeeccCcceeec-CCCccCCCceeEEecCCChhHHH
Q psy16115        200 TEIDVNSLRTPDLTWEKVRSQVDHVIW-PDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~~~~~~~~~~-~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      ++++.++|++|++...++.-+..+ ++ +.+.+-+...+  +-+||.+.++
T Consensus       237 e~aL~~aL~~g~i~ga~lDV~~~E-Pl~~~~pL~~~~nv--ilTPHia~~t  284 (324)
T 3hg7_A          237 EGDLLTALRTGKLGMAVLDVFEQE-PLPADSPLWGQPNL--IITPHNSAYS  284 (324)
T ss_dssp             HHHHHHHHHTTSSSEEEESCCSSS-SCCTTCTTTTCTTE--EECCSCSSCC
T ss_pred             HHHHHHHHHcCCceEEEeccCCCC-CCCCCChhhcCCCE--EEeCCCcccc
Confidence            999999999999976665433322 22 23344333333  2368876643

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.90  E-value=1.1e-23  Score=189.26  Aligned_cols=189  Identities=14%  Similarity=0.170  Sum_probs=144.6

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++...   +....+.|.|....      .+.++.|+||||||+|.||+.+|+
T Consensus        84 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~---~~~~~~~~~W~~~~------~~~~l~gktvGIiGlG~IG~~vA~  154 (324)
T 3evt_A           84 GVVVANTSGIHADAISESVLAAMLSVVRGYHAA---WLNQRGARQWALPM------TTSTLTGQQLLIYGTGQIGQSLAA  154 (324)
T ss_dssp             TCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHH---HHHHTTTCCSSCSS------CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             CcEEEECCCcCchHHHHHHHHHHHHHHhChhHH---HHHHHhcCCcccCC------CCccccCCeEEEECcCHHHHHHHH
Confidence            899999999999999999999999888888654   12334566775432      245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      .++++|++|++||+++...... .......++++++++||+|++|.    .|.++++++.|+.||+|+++||+||+   |
T Consensus       155 ~l~~~G~~V~~~dr~~~~~~~~-~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd  233 (324)
T 3evt_A          155 KASALGMHVIGVNTTGHPADHF-HETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVD  233 (324)
T ss_dssp             HHHHTTCEEEEEESSCCCCTTC-SEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBC
T ss_pred             HHHhCCCEEEEECCCcchhHhH-hhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhh
Confidence            9999999999999987643211 11223457899999999999983    57889999999999999999999999   8


Q ss_pred             hhhchhhhcCCCceeeeeccCcceeecC-CCccCCCceeEEecCCChhHH
Q psy16115        200 TEIDVNSLRTPDLTWEKVRSQVDHVIWP-DVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~  248 (258)
                      ++++.++|++|++...++..+..+ +++ ...+-+...+  +-+||.+.+
T Consensus       234 ~~aL~~aL~~g~i~gA~lDV~~~E-Pl~~~~pL~~~~nv--ilTPHia~~  280 (324)
T 3evt_A          234 TTALMTALDHHQLSMAALDVTEPE-PLPTDHPLWQRDDV--LITPHISGQ  280 (324)
T ss_dssp             HHHHHHHHHTTSCSEEEESSCSSS-SCCTTCGGGGCSSE--EECCSCTTC
T ss_pred             HHHHHHHHHhCCceEEEeCCCCCC-CCCCCChhhcCCCE--EEcCccccC
Confidence            999999999999976655433222 222 3334333333  235776654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.89  E-value=1.8e-23  Score=189.09  Aligned_cols=164  Identities=14%  Similarity=0.198  Sum_probs=132.8

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhccc-CCCCCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK-AGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG  123 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~  123 (258)
                      +.++.|+++|++.+.++||+++.+++...|++.......    + .|.|... .   ...+.++.|+||||||+|.||+.
T Consensus        91 ~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~----~~~g~~~w~-~---~~~~~~l~gktvgIiGlG~IG~~  162 (343)
T 2yq5_A           91 KYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRM----DHDHDFTWP-S---NLISNEIYNLTVGLIGVGHIGSA  162 (343)
T ss_dssp             C--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHH----HHHCCCCCC-G---GGCBCCGGGSEEEEECCSHHHHH
T ss_pred             hCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHH----HHcCCcccc-c---CCCccccCCCeEEEEecCHHHHH
Confidence            458899999999999999999999998888886544322    2 3333210 0   11245789999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      +|++++++|++|++||+++..   ..+.+....++++++++||+|++|.    .|.++++++.|+.||+|+++||+||+ 
T Consensus       163 vA~~l~~~G~~V~~~d~~~~~---~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~  239 (343)
T 2yq5_A          163 VAEIFSAMGAKVIAYDVAYNP---EFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGE  239 (343)
T ss_dssp             HHHHHHHTTCEEEEECSSCCG---GGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHHhhCCCEEEEECCChhh---hhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCCh
Confidence            999999999999999998764   2233456679999999999999983    57899999999999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeecc
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~~  219 (258)
                        |++++.++|+++++...++..
T Consensus       240 ~vd~~aL~~aL~~g~i~gA~LDV  262 (343)
T 2yq5_A          240 LVDTGALIKALQDGEIAGAGLDT  262 (343)
T ss_dssp             GBCHHHHHHHHHHTSSSCEEESC
T ss_pred             hhhHHHHHHHHHcCCCcEEEecc
Confidence              899999999999997666543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.89  E-value=5.3e-23  Score=183.70  Aligned_cols=190  Identities=16%  Similarity=0.192  Sum_probs=146.7

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|....     ..+.++.|++|||||+|.||+.+|+
T Consensus        89 gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~w~~~~-----~~~~~l~g~~vgIiG~G~IG~~~A~  159 (307)
T 1wwk_A           89 GIEVVNAPAASSRSVAELAVGLMFSVARKIAFADR----KMREGVWAKKE-----AMGIELEGKTIGIIGFGRIGYQVAK  159 (307)
T ss_dssp             TCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHH----HHTTTCCCTTT-----CCBCCCTTCEEEEECCSHHHHHHHH
T ss_pred             CcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCCccC-----cCCcccCCceEEEEccCHHHHHHHH
Confidence            88999999999999999999999988888765332    33556674210     1245689999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      .++++|++|+++|+++.+ ..+.+.|+...+++++++++|+|++|.    .+.++++++.++.||+|+++||+||+   +
T Consensus       160 ~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd  238 (307)
T 1wwk_A          160 IANALGMNILLYDPYPNE-ERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVD  238 (307)
T ss_dssp             HHHHTTCEEEEECSSCCH-HHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBC
T ss_pred             HHHHCCCEEEEECCCCCh-hhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccC
Confidence            999999999999998876 445667887778999999999999983    47789998899999999999999999   7


Q ss_pred             hhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHH
Q psy16115        200 TEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~  248 (258)
                      ++++.++|+++++...++.-+..+-..+...+-....+.+  .||.+.+
T Consensus       239 ~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nvil--tPh~~~~  285 (307)
T 1wwk_A          239 TNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVL--TPHIGAS  285 (307)
T ss_dssp             HHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEE--CSSCTTC
T ss_pred             HHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEE--CCccccC
Confidence            8889999999998765553322221113333433333322  5776554

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.89  E-value=4.2e-23  Score=190.59  Aligned_cols=159  Identities=50%  Similarity=0.797  Sum_probs=133.0

Q ss_pred             CCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc
Q psy16115         76 LSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV  155 (258)
Q Consensus        76 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~  155 (258)
                      ++++..+...+...|..+..+.++.+..+.++.|++|+|+|+|.||+.+|++++++|++|+++|+++.+...+...|++.
T Consensus       214 Vnds~tK~~fDn~yG~~eslvdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v  293 (464)
T 3n58_A          214 VNDSVTKSKFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV  293 (464)
T ss_dssp             CTTSHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE
T ss_pred             eccHhhhhhhhhhhcchHHHHHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee
Confidence            34444444444444444455666777677889999999999999999999999999999999999998877777889988


Q ss_pred             cCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCc
Q psy16115        156 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNT  235 (258)
Q Consensus       156 ~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~  235 (258)
                      .+++++++++|+|+.++++.++++++.|+.||+|++++|+||++.+++.++|.+  ......++++++|.++++     .
T Consensus       294 v~LeElL~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~--~~~~~ik~~v~~~~~~~g-----~  366 (464)
T 3n58_A          294 VTLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN--LKWTNVKPQVDLIEFPDG-----K  366 (464)
T ss_dssp             CCHHHHGGGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT--SEEEEEETTEEEEECTTS-----C
T ss_pred             ccHHHHHhhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh--CccccccCCeeEEEeCCC-----C
Confidence            899999999999999999999999999999999999999999998888999985  677788999999997654     4


Q ss_pred             eeEEec
Q psy16115        236 VIDLFR  241 (258)
Q Consensus       236 ~~~l~~  241 (258)
                      -|.|++
T Consensus       367 ~i~lLa  372 (464)
T 3n58_A          367 RLILLS  372 (464)
T ss_dssp             EEEEEG
T ss_pred             EEEEEe
Confidence            555554

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.89  E-value=1.2e-23  Score=188.47  Aligned_cols=212  Identities=13%  Similarity=0.112  Sum_probs=151.9

Q ss_pred             ccccccCCCcchhhHHHHHHHH-HhCCCCCCCCceEECChhh-hHHHHhcccCccccccccCCHHHHHhhhcccCCCCCc
Q psy16115         17 VSPVCIRSNPLIIPQALALIEL-FNAPAGRYKSDVYLLPKKM-DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKP   94 (258)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~V~~lP~~~-~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~   94 (258)
                      +++..+.....+++.+++.++. ...  .+.++.|+++|+.. +.++||+++.+++...|++.....    ..+.|.|..
T Consensus        58 ~~Lk~I~~~~aG~d~i~d~~~a~~~~--~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~W~~  131 (315)
T 3pp8_A           58 RRLKAVFVLGAGVDAILSKLNAHPEM--LDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQA----LKNQALWKP  131 (315)
T ss_dssp             CCCSEEEESSSCCHHHHHHHHHCTTS--SCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCC
T ss_pred             CCceEEEECCEecccccchhhhhhhh--hcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHH----HHHhcccCC
Confidence            5555555555555666441221 001  23388999999864 799999999999988888865332    334566753


Q ss_pred             chhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc----ccCHHHHHHhCCeeee
Q psy16115         95 SYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS----VVKLNEVIRTVDIVVT  170 (258)
Q Consensus        95 ~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~----~~~l~e~~~~aDvvi~  170 (258)
                      .       .+.++.|+||||||+|.||+.+|+.++++|++|++||+++....     ++.    ..++++++++||+|++
T Consensus       132 ~-------~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~~~~~~~l~ell~~aDiV~l  199 (315)
T 3pp8_A          132 L-------PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP-----GVESYVGREELRAFLNQTRVLIN  199 (315)
T ss_dssp             C-------CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCT-----TCEEEESHHHHHHHHHTCSEEEE
T ss_pred             C-------CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhh-----hhhhhcccCCHHHHHhhCCEEEE
Confidence            2       13568999999999999999999999999999999999876431     222    2478999999999999


Q ss_pred             cc----CccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeeeccCcceeecC-CCccCCCceeEEecC
Q psy16115        171 AT----GNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKVRSQVDHVIWP-DVNLKNNTVIDLFRK  242 (258)
Q Consensus       171 ~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~  242 (258)
                      |.    .|.++++++.|+.||+|+++||+||+   |+++++++|++|++...++..+..+ +++ .+.+-+...+  +-+
T Consensus       200 ~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E-Pl~~~~pL~~~~nv--ilT  276 (315)
T 3pp8_A          200 LLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE-PLPQESPLWRHPRV--AMT  276 (315)
T ss_dssp             CCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS-SCCTTCGGGGCTTE--EEC
T ss_pred             ecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCC-CCCCCChhhcCCCE--EEC
Confidence            83    57889999999999999999999999   8999999999999976665433322 222 2334333333  236


Q ss_pred             CChhHHH
Q psy16115        243 PKSRLYL  249 (258)
Q Consensus       243 ~~~~~~~  249 (258)
                      ||.+.++
T Consensus       277 PHia~~t  283 (315)
T 3pp8_A          277 PHIAAVT  283 (315)
T ss_dssp             SSCSSCC
T ss_pred             CCCCccc
Confidence            8877653

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.89  E-value=5.1e-23  Score=189.94  Aligned_cols=161  Identities=18%  Similarity=0.260  Sum_probs=131.4

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|++.+.++||+++.+++...|++......    .+.|.|.....     .+.++.|+|+||||+|.||+.+|+
T Consensus       103 GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~----~~~g~W~~~~~-----~~~el~gktvGIIGlG~IG~~vA~  173 (416)
T 3k5p_A          103 GIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVS----AHAGGWEKTAI-----GSREVRGKTLGIVGYGNIGSQVGN  173 (416)
T ss_dssp             TCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHH----HHTTCCCCCCT-----TCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             CcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHh----hhcccccccCC-----CCccCCCCEEEEEeeCHHHHHHHH
Confidence            899999999999999999999999888888764432    34566653221     245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCC-cccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      .++++|++|++||+++...    ..+. ...++++++++||+|++|.    .|.++++++.|+.||+|+++||+||+   
T Consensus       174 ~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vv  249 (416)
T 3k5p_A          174 LAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV  249 (416)
T ss_dssp             HHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSB
T ss_pred             HHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhh
Confidence            9999999999999875421    1122 3458999999999999983    57799999999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccC
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      |++++.++|++|++...++.-+
T Consensus       250 d~~aL~~aL~~g~i~gAalDVf  271 (416)
T 3k5p_A          250 DLEALAKVLQEGHLAGAAIDVF  271 (416)
T ss_dssp             CHHHHHHHHHTTSEEEEEECCC
T ss_pred             hHHHHHHHHHcCCccEEEeCCC
Confidence            8999999999999977666433

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.89  E-value=5.3e-23  Score=188.99  Aligned_cols=194  Identities=10%  Similarity=0.029  Sum_probs=146.9

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|+++|+..+.++||+++.+++...|++.....    ..+.|.|.....   ...+.++.|+++||||+|.||+.+|+
T Consensus       136 gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~----~~~~g~W~~~~~---~~~~~~l~gktvGIIGlG~IG~~vA~  208 (393)
T 2nac_A          136 NVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHE----WARKGGWNIADC---VSHAYDLEAMHVGTVAAGRIGLAVLR  208 (393)
T ss_dssp             TCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCHHHH---HTTCCCCTTCEEEEECCSHHHHHHHH
T ss_pred             CEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHH----HHHcCCCCcccc---ccCCccCCCCEEEEEeECHHHHHHHH
Confidence            88999999999999999999999988888765332    234566743211   11245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      .++++|++|+++|+++.+...+.+.|+.. .+++++++++|+|++|.    .+.++++++.|+.||+|+++||+||+   
T Consensus       209 ~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~v  288 (393)
T 2nac_A          209 RLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLC  288 (393)
T ss_dssp             HHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGB
T ss_pred             HHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHh
Confidence            99999999999999876555555667764 57999999999999983    57889998999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      +++++.++|++++|...++.-+..+-..+.+.+-....+  +-.||.+.++
T Consensus       289 de~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nv--ilTPHia~~T  337 (393)
T 2nac_A          289 DRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN--GMTPHISGTT  337 (393)
T ss_dssp             CHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTB--CCCCSCTTCS
T ss_pred             hHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCE--EECCCCCcCc
Confidence            888999999999987665533222111122333322222  2368877654

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.88  E-value=5.1e-23  Score=187.78  Aligned_cols=166  Identities=16%  Similarity=0.148  Sum_probs=137.2

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|+++|+..+.++||+++.+++...|++.....    ..+.|.|......   ..+.++.|++|||||+|.||+.+|+
T Consensus       109 gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~W~~~~~~---~~~~~l~g~tvgIIG~G~IG~~vA~  181 (364)
T 2j6i_A          109 KISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHE----QIINHDWEVAAIA---KDAYDIEGKTIATIGAGRIGYRVLE  181 (364)
T ss_dssp             CCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCHHHHH---TTCCCSTTCEEEEECCSHHHHHHHH
T ss_pred             CEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHH----HHHhCCCCcCccc---CCcccCCCCEEEEECcCHHHHHHHH
Confidence            78999999999999999999999888888765332    2345667421110   1245789999999999999999999


Q ss_pred             HHHhCCCE-EEEEeCChhhHHHHHhCCCccc-CHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        127 SLKGLGCV-IYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       127 ~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      .++++|++ |+++|+++.+...+.+.|+... +++++++++|+|++|.    .+.++++++.|+.||+++++||+||+  
T Consensus       182 ~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~  261 (364)
T 2j6i_A          182 RLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI  261 (364)
T ss_dssp             HHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGG
T ss_pred             HHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCch
Confidence            99999997 9999998766555666777654 8999999999999983    56789998899999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeecc
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~~  219 (258)
                       |++++.++|++++|...++..
T Consensus       262 vd~~aL~~aL~~g~i~gA~LDV  283 (364)
T 2j6i_A          262 CVAEDVAAALESGQLRGYGGDV  283 (364)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESC
T ss_pred             hCHHHHHHHHHcCCCcEEEEec
Confidence             889999999999997666543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.88  E-value=2.2e-22  Score=181.61  Aligned_cols=161  Identities=14%  Similarity=0.157  Sum_probs=134.8

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|++.+.++||+++.+++...|++.....    ..+.|.|....     ..+.++.|++|||||+|.||+.+|+
T Consensus       112 gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~W~~~~-----~~~~~l~g~tvgIIGlG~IG~~vA~  182 (335)
T 2g76_A          112 GILVMNTPNGNSLSAAELTCGMIMCLARQIPQATA----SMKDGKWERKK-----FMGTELNGKTLGILGLGRIGREVAT  182 (335)
T ss_dssp             TCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHH----HHHTTCCCTGG-----GCBCCCTTCEEEEECCSHHHHHHHH
T ss_pred             CeEEEECCCccchHHHHHHHHHHHHHHhchHHHHH----HHHcCCCCccC-----CCCcCCCcCEEEEEeECHHHHHHHH
Confidence            78999999999999999999998888888765332    23456674221     1245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      .++++|++|++||+++.+. .+...|++..+++++++++|+|++|.    .+.++++++.++.||+|+++||+||+   +
T Consensus       183 ~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd  261 (335)
T 2g76_A          183 RMQSFGMKTIGYDPIISPE-VSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVD  261 (335)
T ss_dssp             HHHTTTCEEEEECSSSCHH-HHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             HHHHCCCEEEEECCCcchh-hhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccC
Confidence            9999999999999987653 45667877778999999999999983    57789998999999999999999999   7


Q ss_pred             hhhchhhhcCCCceeeee
Q psy16115        200 TEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~  217 (258)
                      ++++.++|+++++...++
T Consensus       262 ~~aL~~aL~~g~i~gA~l  279 (335)
T 2g76_A          262 EGALLRALQSGQCAGAAL  279 (335)
T ss_dssp             HHHHHHHHHHTSEEEEEE
T ss_pred             HHHHHHHHHhCCccEEEE
Confidence            888999999999865544

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.88  E-value=1.7e-22  Score=186.62  Aligned_cols=158  Identities=19%  Similarity=0.271  Sum_probs=129.6

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++......    .+.|.|....     ..+.++.|+|+||||+|.||+.+|+
T Consensus        92 GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~----~~~g~W~~~~-----~~~~el~gktlGiIGlG~IG~~vA~  162 (404)
T 1sc6_A           92 GIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAK----AHRGVGNKLA-----AGSFEARGKKLGIIGYGHIGTQLGI  162 (404)
T ss_dssp             TCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHH----HHHTCCC----------CCCSTTCEEEEECCSHHHHHHHH
T ss_pred             CCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHH----HHcCCccccC-----CCccccCCCEEEEEeECHHHHHHHH
Confidence            899999999999999999999999888888654332    3445664221     1245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      +++++|++|++||+++...    ..++.. .++++++++||+|++|.    .|.++++++.|+.||+|+++||+||+   
T Consensus       163 ~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~v  238 (404)
T 1sc6_A          163 LAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV  238 (404)
T ss_dssp             HHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSB
T ss_pred             HHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHH
Confidence            9999999999999876531    122443 48999999999999983    67889998999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeee
Q psy16115        199 NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~  217 (258)
                      |++++.++|++|++...++
T Consensus       239 d~~aL~~aL~~g~i~gA~l  257 (404)
T 1sc6_A          239 DIPALADALASKHLAGAAI  257 (404)
T ss_dssp             CHHHHHHHHHTTSEEEEEE
T ss_pred             hHHHHHHHHHcCCccEEEE
Confidence            8889999999999865544

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.87  E-value=2.3e-22  Score=185.34  Aligned_cols=148  Identities=74%  Similarity=1.273  Sum_probs=127.9

Q ss_pred             CcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc
Q psy16115         93 KPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus        93 ~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~  172 (258)
                      ...++++.+..+..+.|++|+|+|+|+||+.+|+.|+++|++|+++|+++.+...+...|++..+++++++++|+|++|+
T Consensus       204 ~s~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~at  283 (435)
T 3gvp_A          204 ESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCT  283 (435)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS
T ss_pred             HHHHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEECC
Confidence            34445566656677899999999999999999999999999999999999887778888988889999999999999999


Q ss_pred             CccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCCh
Q psy16115        173 GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKS  245 (258)
Q Consensus       173 ~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  245 (258)
                      ++.++++++.|+.||+|++++|+||++.+++++++....+....++++++.|.+++     +..|.|++.++-
T Consensus       284 gt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~~~~~~~~~ir~~v~~y~~~d-----g~~I~LLAeGrL  351 (435)
T 3gvp_A          284 GNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPD-----GKRIVLLAEGRL  351 (435)
T ss_dssp             SCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGCSTTCEEEEEETTEEEEECTT-----SCEEEEEGGGSB
T ss_pred             CCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHHhhcceeEEEEcCeeeEEcCC-----CcEEEEecCCCE
Confidence            99999999999999999999999999998999988766667777888888887654     467777776554

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.87  E-value=2.1e-22  Score=182.53  Aligned_cols=196  Identities=14%  Similarity=0.154  Sum_probs=145.1

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhc-cC-cCcccCCCEEEEEcCchHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLK-RS-TDVMFGGKQVVLCGYGEVGKGC  124 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~-~~~~l~g~~V~IiG~G~IG~~~  124 (258)
                      ++.|+++|++.+.++||+++.+++...|++.....    ..+.|.|........ .. ...++.|++|||||+|.||+.+
T Consensus       108 gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~v  183 (347)
T 1mx3_A          108 GIAVCNVPAASVEETADSTLCHILNLYRRATWLHQ----ALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAV  183 (347)
T ss_dssp             TCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHH----HHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHH
T ss_pred             CceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHH----HHHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHH
Confidence            89999999999999999999998888888764332    234455632111000 00 1246899999999999999999


Q ss_pred             HHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        125 CQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       125 a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      |+.++++|++|++||+++.+. .+...|+.. .+++++++++|+|++|.    .+.++++++.++.||+|+++||+||+ 
T Consensus       184 A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~  262 (347)
T 1mx3_A          184 ALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGG  262 (347)
T ss_dssp             HHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTT
T ss_pred             HHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCCh
Confidence            999999999999999887643 234456654 48999999999999983    57789998999999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeeccCcce-eecCCCccCCCceeEEecCCChhHHH
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVRSQVDH-VIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                        +++++.++|+++++...+..-+..+ +....+.+.....+  +-.||.+.++
T Consensus       263 ~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nv--i~tPHia~~t  314 (347)
T 1mx3_A          263 LVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNL--ICTPHAAWYS  314 (347)
T ss_dssp             SBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSE--EECSSCTTCC
T ss_pred             HHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCE--EEEchHHHHH
Confidence              8889999999999876555332221 22223445544444  2367777644

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.87  E-value=1.5e-22  Score=182.93  Aligned_cols=188  Identities=14%  Similarity=0.212  Sum_probs=127.9

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|.... ..  ..+.++.|+|+||||+|.||+.+|+
T Consensus       116 gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~----~~~~g~W~~~~-~~--~~~~~l~gktiGIIGlG~IG~~vA~  188 (340)
T 4dgs_A          116 NIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDR----LVREGRWAAGE-QL--PLGHSPKGKRIGVLGLGQIGRALAS  188 (340)
T ss_dssp             TCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCC---------CCCCCCTTCEEEEECCSHHHHHHHH
T ss_pred             CEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHH----HHhcCCccccc-Cc--CccccccCCEEEEECCCHHHHHHHH
Confidence            89999999999999999999999988888865433    23456664320 00  1245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      .++++|++|++||+++.+.     .++. ..++++++++||+|++|.    .+.++++++.++.||+++++||+||+   
T Consensus       189 ~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vv  263 (340)
T 4dgs_A          189 RAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVV  263 (340)
T ss_dssp             HHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---
T ss_pred             HHHHCCCEEEEEcCCcccc-----cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCccc
Confidence            9999999999999987642     2333 458999999999999983    57889999999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      |++++.++|++|+|...++..+..+ +.+.+.+-....+  +-.||.+.++
T Consensus       264 de~aL~~aL~~g~i~gA~LDVf~~E-P~~~~~L~~~~nv--ilTPHia~~t  311 (340)
T 4dgs_A          264 DEDALIEALKSGTIAGAGLDVFVNE-PAIRSEFHTTPNT--VLMPHQGSAT  311 (340)
T ss_dssp             -----------CCSSEEEESCCSSS-SSCCSHHHHSSSE--EECSSCSSCC
T ss_pred             CHHHHHHHHHcCCceEEEeCCcCCC-CCCccchhhCCCE--EEcCcCCcCC
Confidence            8999999999999977666433322 2333333333333  2357766543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.87  E-value=3.3e-22  Score=179.03  Aligned_cols=159  Identities=18%  Similarity=0.273  Sum_probs=134.7

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|..       ..+.++.|++|||||+|.||+.+|+
T Consensus        91 gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~w~~-------~~~~~l~g~~vgIIG~G~IG~~~A~  159 (313)
T 2ekl_A           91 NIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMA----LAKSGIFKK-------IEGLELAGKTIGIVGFGRIGTKVGI  159 (313)
T ss_dssp             TCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHH----HHHTTCCCC-------CCCCCCTTCEEEEESCSHHHHHHHH
T ss_pred             CeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCCC-------CCCCCCCCCEEEEEeeCHHHHHHHH
Confidence            88999999999999999999999888888765332    234566741       1245689999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      .++++|++|+++|+++.+. .+.+.|+...+++++++++|+|++|.    .+.++++++.++.||+|+++||+||+   +
T Consensus       160 ~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd  238 (313)
T 2ekl_A          160 IANAMGMKVLAYDILDIRE-KAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVN  238 (313)
T ss_dssp             HHHHTTCEEEEECSSCCHH-HHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBC
T ss_pred             HHHHCCCEEEEECCCcchh-HHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccC
Confidence            9999999999999988764 45667877778999999999999984    47789988899999999999999999   7


Q ss_pred             hhhchhhhcCCCceeeee
Q psy16115        200 TEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~  217 (258)
                      ++++.++|+++++...+.
T Consensus       239 ~~aL~~aL~~g~i~ga~l  256 (313)
T 2ekl_A          239 GKALLDYIKKGKVYAYAT  256 (313)
T ss_dssp             HHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHHcCCCcEEEE
Confidence            888999999999865554

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.87  E-value=2.7e-22  Score=185.29  Aligned_cols=143  Identities=41%  Similarity=0.764  Sum_probs=126.2

Q ss_pred             hhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc
Q psy16115         96 YYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus        96 ~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      +.++.+..+.++.|++|+|+|+|.||+.+|+.|+++|++|+++|+++.+...+...|++..+++++++++|+|++++++.
T Consensus       198 ldgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt~gt~  277 (436)
T 3h9u_A          198 VDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTTTGND  277 (436)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCS
T ss_pred             HHHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEECCCCc
Confidence            34444444667899999999999999999999999999999999999887778888998889999999999999999999


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      ++++++.|+.||+|++++|+||++.+++.++|....++..++++++++|.+++     +..+.|++.+
T Consensus       278 ~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~~~~~~~ir~~vd~y~~~d-----g~~I~LLaeG  340 (436)
T 3h9u_A          278 DIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQVDRYTMAN-----GRHIILLAEG  340 (436)
T ss_dssp             CSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHHCSEEEEEETTEEEEECTT-----SCEEEEEGGG
T ss_pred             CccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhhcCceEeecCCceEEEcCC-----CCEEEEecCC
Confidence            99999999999999999999999999999999888888889999998888654     5677777644

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.86  E-value=8.9e-22  Score=176.72  Aligned_cols=192  Identities=10%  Similarity=0.115  Sum_probs=144.6

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|.....  ....+.++.|++|||||+|.||+.+|+
T Consensus        90 gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~w~~~~~--~~~~~~~l~g~~vgIIG~G~IG~~~A~  163 (320)
T 1gdh_A           90 GIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEK----MIRTRSWPGWEP--LELVGEKLDNKTLGIYGFGSIGQALAK  163 (320)
T ss_dssp             TCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCCCCT--TTTCBCCCTTCEEEEECCSHHHHHHHH
T ss_pred             CcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHH----HHHcCCCCcccc--ccccCcCCCCCEEEEECcCHHHHHHHH
Confidence            88999999999999999999999988888765332    234556642100  011245689999999999999999999


Q ss_pred             HHHhCCCEEEEEeC-ChhhHHHHHhCCCccc-CHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        127 SLKGLGCVIYITEI-DPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~-~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      .++++|++|+++|+ ++.+. .+.+.|+... +++++++++|+|++|.    .+.++++++.++.||+|+++||+||+  
T Consensus       164 ~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~  242 (320)
T 1gdh_A          164 RAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDL  242 (320)
T ss_dssp             HHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGG
T ss_pred             HHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcc
Confidence            99999999999999 87653 4455677666 8999999999999983    47789998899999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHH
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~  248 (258)
                       +++++.++|+++++...++.-+..+- .+...+-....+.+  .||.+.+
T Consensus       243 vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nvil--tPH~~~~  290 (320)
T 1gdh_A          243 VDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFL--FPHIGSA  290 (320)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEE--CSSCTTC
T ss_pred             cCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEE--CCcCCcC
Confidence             78889999999998765553322211 23344443443322  5666554

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.86  E-value=2.9e-22  Score=180.87  Aligned_cols=163  Identities=14%  Similarity=0.133  Sum_probs=133.2

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|+++|++.+.++||+++.+++...|++.....    ..+.|.|..  ..   ..+.++.|++|||||+|.||+.+|
T Consensus        92 ~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~w~~--~~---~~~~~l~g~~vgIiG~G~IG~~~A  162 (333)
T 1j4a_A           92 LGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE----KVARHDLRW--AP---TIGREVRDQVVGVVGTGHIGQVFM  162 (333)
T ss_dssp             TTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHH----HHHTTBCCC--TT---CCBCCGGGSEEEEECCSHHHHHHH
T ss_pred             CCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHH----HHHcCCCcc--CC---cccccCCCCEEEEEccCHHHHHHH
Confidence            388999999999999999999999888888765432    234455531  11   124568999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC--
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS--  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~--  198 (258)
                      +.++++|++|++||+++.+.  +.+ .+... +++++++++|+|++|.    .+.++++++.++.||+|+++||+||+  
T Consensus       163 ~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~  239 (333)
T 1j4a_A          163 QIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPL  239 (333)
T ss_dssp             HHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGG
T ss_pred             HHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcc
Confidence            99999999999999988654  222 24555 7999999999999984    47789998899999999999999999  


Q ss_pred             -ChhhchhhhcCCCceeeeeccC
Q psy16115        199 -NTEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       199 -~~~~~~~~l~~~~i~~~~~~~~  220 (258)
                       +++++.++|+++++...++..+
T Consensus       240 vd~~aL~~aL~~g~i~gA~LDV~  262 (333)
T 1j4a_A          240 VDTDAVIRGLDSGKIFGYAMDVY  262 (333)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCC
T ss_pred             cCHHHHHHHHHhCCceEEEEecC
Confidence             8999999999999987766433

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.86  E-value=8.2e-22  Score=177.86  Aligned_cols=164  Identities=19%  Similarity=0.292  Sum_probs=133.5

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|+++|++.+.++||+++.+++...|++.....    ..+.|.|.  +.  ....+.++.|++|||||+|.||+.+|
T Consensus        90 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~w~--~~--~~~~~~~l~g~~vgIiG~G~IG~~~A  161 (333)
T 1dxy_A           90 YGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQA----QLQAGDYE--KA--GTFIGKELGQQTVGVMGTGHIGQVAI  161 (333)
T ss_dssp             TTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCHH--HH--TCCCCCCGGGSEEEEECCSHHHHHHH
T ss_pred             CCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHH----HHHcCCcc--cc--cCCCccCCCCCEEEEECcCHHHHHHH
Confidence            388999999999999999999999988888865433    23445542  10  01124578999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      +.++++|++|++||+++.+.  + ...+...+++++++++|+|++|.    .+.++++++.++.||+|+++||+||+   
T Consensus       162 ~~l~~~G~~V~~~d~~~~~~--~-~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v  238 (333)
T 1dxy_A          162 KLFKGFGAKVIAYDPYPMKG--D-HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLI  238 (333)
T ss_dssp             HHHHHTTCEEEEECSSCCSS--C-CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSB
T ss_pred             HHHHHCCCEEEEECCCcchh--h-HhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCccc
Confidence            99999999999999987643  1 12345568999999999999983    47789998999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccC
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      |++++.++|+++++...++..+
T Consensus       239 d~~aL~~aL~~g~i~gA~LDV~  260 (333)
T 1dxy_A          239 DTQAMLSNLKSGKLAGVGIDTY  260 (333)
T ss_dssp             CHHHHHHHHHTTSEEEEEESSC
T ss_pred             CHHHHHHHHHhCCccEEEEecC
Confidence            8999999999999987766443

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.85  E-value=3.5e-22  Score=182.46  Aligned_cols=168  Identities=13%  Similarity=0.099  Sum_probs=130.3

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++..++...++                           .+.++.|+||||||+|.||+.+|+
T Consensus        84 gI~v~n~pg~~~~~VAE~~l~~lL~l~r~---------------------------~g~~l~gktvGIIGlG~IG~~vA~  136 (381)
T 3oet_A           84 GIGFSAAPGCNAIAVVEYVFSALLMLAER---------------------------DGFSLRDRTIGIVGVGNVGSRLQT  136 (381)
T ss_dssp             TCEEECCTTTTHHHHHHHHHHHHHHHHHH---------------------------TTCCGGGCEEEEECCSHHHHHHHH
T ss_pred             CEEEEECCCcCcchhHHHHHHHHHHHHHh---------------------------cCCccCCCEEEEEeECHHHHHHHH
Confidence            89999999999999999987766533221                           124578999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----C----ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----G----NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~----~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .++++|++|++||++...    ...+....++++++++||+|++|.    .    |.++++++.|+.||+|+++||+|||
T Consensus       137 ~l~a~G~~V~~~d~~~~~----~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG  212 (381)
T 3oet_A          137 RLEALGIRTLLCDPPRAA----RGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG  212 (381)
T ss_dssp             HHHHTTCEEEEECHHHHH----TTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCG
T ss_pred             HHHHCCCEEEEECCChHH----hccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCC
Confidence            999999999999874321    124556778999999999999984    3    8889999999999999999999999


Q ss_pred             ---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        199 ---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       199 ---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                         |+++++++|++|++...++..+..+ +.+.+.+-+..   .+.+||.+.++
T Consensus       213 ~vvde~aL~~aL~~g~i~gA~LDV~e~E-P~~~~~L~~~~---~i~TPHiag~t  262 (381)
T 3oet_A          213 PVVDNAALLARLNAGQPLSVVLDVWEGE-PDLNVALLEAV---DIGTSHIAGYT  262 (381)
T ss_dssp             GGBCHHHHHHHHHTTCCEEEEESCCTTT-TSCCHHHHHHS---SEECSSCTTCC
T ss_pred             cccCHHHHHHHHHhCCCeEEEeeccccC-CCCcchhhhCC---EEECCccCcCc
Confidence               8999999999999976665332221 22222222211   23479987654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.85  E-value=3.8e-21  Score=171.97  Aligned_cols=188  Identities=20%  Similarity=0.222  Sum_probs=140.0

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|......  ...+.++.|++|||||+|.||+.+|
T Consensus        87 ~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~w~~~~~~--~~~~~~l~g~~vgIIG~G~IG~~~A  160 (311)
T 2cuk_A           87 RGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAA----YARDGLWKAWHPE--LLLGLDLQGLTLGLVGMGRIGQAVA  160 (311)
T ss_dssp             TTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCCCCTT--TTCBCCCTTCEEEEECCSHHHHHHH
T ss_pred             CCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHH----HHHcCCCCccccc--cccCcCCCCCEEEEEEECHHHHHHH
Confidence            389999999999999999999999988888865433    2345566421100  0123568999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      +.++++|++|+++|+++.+..      +...+++++++++|+|++|.    .+.++++++.++.||+|+++||+||+   
T Consensus       161 ~~l~~~G~~V~~~d~~~~~~~------~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~v  234 (311)
T 2cuk_A          161 KRALAFGMRVVYHARTPKPLP------YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV  234 (311)
T ss_dssp             HHHHHTTCEEEEECSSCCSSS------SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred             HHHHHCCCEEEEECCCCcccc------cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCcc
Confidence            999999999999999876532      34568999999999999983    57789998899999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHH
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~  248 (258)
                      +++++.++|+ +++...++..+..+-..+...+-....+.+  .||.+.+
T Consensus       235 d~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nvil--tPh~~~~  281 (311)
T 2cuk_A          235 DTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVI--TPHIGSA  281 (311)
T ss_dssp             CHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEE--CCSCTTC
T ss_pred             CHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEE--CCcCCCC
Confidence            7788999999 988655543322221122333333333322  5666554

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.85  E-value=1.4e-21  Score=176.12  Aligned_cols=164  Identities=21%  Similarity=0.258  Sum_probs=133.5

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|+++|++.+.++||+++.+++...|++.....    ..+.|.|... ..   ..+.++.|++|||||+|.||+.+|
T Consensus        91 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~w~~~-~~---~~~~~l~g~~vgIiG~G~IG~~~A  162 (331)
T 1xdw_A           91 LGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTS----RTAKKNFKVD-AF---MFSKEVRNCTVGVVGLGRIGRVAA  162 (331)
T ss_dssp             TTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHH----HHTTTCCCCC-ST---TCCCCGGGSEEEEECCSHHHHHHH
T ss_pred             CCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCccc-cC---cCccCCCCCEEEEECcCHHHHHHH
Confidence            388999999999999999999999888888765332    2345555310 11   124568999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      +.++++|++|++||+++.+.  + ...+...+++++++++|+|++|.    .+.++++++.++.||+|+++||+||+   
T Consensus       163 ~~l~~~G~~V~~~d~~~~~~--~-~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~v  239 (331)
T 1xdw_A          163 QIFHGMGATVIGEDVFEIKG--I-EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLV  239 (331)
T ss_dssp             HHHHHTTCEEEEECSSCCCS--C-TTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGB
T ss_pred             HHHHHCCCEEEEECCCccHH--H-HhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccc
Confidence            99999999999999987653  1 22345568999999999999972    57789998999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccC
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      |++++.++|+++++...++..+
T Consensus       240 d~~aL~~aL~~g~i~gA~LDV~  261 (331)
T 1xdw_A          240 DTEAVIEAVESGKLGGYGCDVL  261 (331)
T ss_dssp             CHHHHHHHHHHTSEEEEEESCC
T ss_pred             cHHHHHHHHHhCCceEEEEecC
Confidence            8899999999999977666443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.84  E-value=3.8e-21  Score=171.36  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=130.4

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      .++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|....      ...++.|+++||||+|.||+.+|
T Consensus        71 ~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~w~~~~------~~~~l~g~~vgIIG~G~IG~~~A  140 (303)
T 1qp8_A           71 PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGE----KMKRGDYGRDV------EIPLIQGEKVAVLGLGEIGTRVG  140 (303)
T ss_dssp             TTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCCCS------CCCCCTTCEEEEESCSTHHHHHH
T ss_pred             cCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCCCCC------CCCCCCCCEEEEEccCHHHHHHH
Confidence            378899999999999999999999988888765332    23456664221      12358999999999999999999


Q ss_pred             HHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        126 QSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       126 ~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      +.++++|++|+++|+++. . .   ......++++++++||+|++|.    .+.++++++.++.||+|+++||+||+   
T Consensus       141 ~~l~~~G~~V~~~dr~~~-~-~---~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~v  215 (303)
T 1qp8_A          141 KILAALGAQVRGFSRTPK-E-G---PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVL  215 (303)
T ss_dssp             HHHHHTTCEEEEECSSCC-C-S---SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred             HHHHHCCCEEEEECCCcc-c-c---CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCccc
Confidence            999999999999998875 1 1   1223457899999999999983    57889998899999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeeccC
Q psy16115        199 NTEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      +++++.++|+++++...++..+
T Consensus       216 d~~aL~~aL~~g~i~gA~lDv~  237 (303)
T 1qp8_A          216 DRDGVLRILKERPQFIFASDVW  237 (303)
T ss_dssp             CHHHHHHHHHHCTTCEEEESCC
T ss_pred             CHHHHHHHHHhCCceEEEeccC
Confidence            7888999999999877666443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.84  E-value=6e-21  Score=173.15  Aligned_cols=168  Identities=17%  Similarity=0.157  Sum_probs=134.7

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCC---CCcchhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGP---FKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKG  123 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~  123 (258)
                      ++.|++.|++.+.++||+++.+++...|++.....    ..+.|.   |...... ....+.++.|++|||||+|.||+.
T Consensus       103 gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~----~~~~g~~~~w~~~~~~-~~~~~~~l~g~~vgIIG~G~IG~~  177 (348)
T 2w2k_A          103 GVAFANSRGAGDTATSDLALYLILSVFRLASYSER----AARTGDPETFNRVHLE-IGKSAHNPRGHVLGAVGLGAIQKE  177 (348)
T ss_dssp             TCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHH----HHTTCCHHHHHHHHHH-HHTTCCCSTTCEEEEECCSHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHH----HHHcCCCccccccccc-ccccCcCCCCCEEEEEEECHHHHH
Confidence            89999999999999999999999888888765332    234555   5211000 001245789999999999999999


Q ss_pred             HHHHHH-hCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCC
Q psy16115        124 CCQSLK-GLGCVIYITEIDPICALQACMDGFSVV-KLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       124 ~a~~l~-~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      +|+.++ .+|++|+++|+++.+.+.+.+.|+... +++++++++|+|++|.    .+.++++++.++.||+++++||+||
T Consensus       178 vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~sr  257 (348)
T 2w2k_A          178 IARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR  257 (348)
T ss_dssp             HHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             HHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCC
Confidence            999999 999999999998876555555566655 8999999999999984    4678999889999999999999999


Q ss_pred             C---ChhhchhhhcCCCceeeeecc
Q psy16115        198 S---NTEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       198 ~---~~~~~~~~l~~~~i~~~~~~~  219 (258)
                      +   +++++.++|+++++...+..-
T Consensus       258 g~~vd~~aL~~aL~~~~i~gaglDv  282 (348)
T 2w2k_A          258 GPVISQDALIAALKSGKLLSAGLDV  282 (348)
T ss_dssp             GGGBCHHHHHHHHHTTSEEEEEESS
T ss_pred             CchhCHHHHHHHHHhCCceEEEecc
Confidence            9   788899999999887655543

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.83  E-value=1.7e-20  Score=168.97  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=132.9

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|.....  ....+.++.|++|+|||+|.||+.+|+
T Consensus        99 gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~----~~~~~~w~~~~~--~~~~~~~l~g~~vgIIG~G~iG~~iA~  172 (330)
T 2gcg_A           99 GIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIE----EVKNGGWTSWKP--LWLCGYGLTQSTVGIIGLGRIGQAIAR  172 (330)
T ss_dssp             TCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCSCCT--TSSCBCCCTTCEEEEECCSHHHHHHHH
T ss_pred             CceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCcccCc--ccccCcCCCCCEEEEECcCHHHHHHHH
Confidence            88999999999999999999999888888765332    234455632100  011245689999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      .++.+|++|+++|+++.+...+.+.|+...+++++++++|+|++|.    .+.++++++.++.||+++++||+|++   +
T Consensus       173 ~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~  252 (330)
T 2gcg_A          173 RLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVN  252 (330)
T ss_dssp             HHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBC
T ss_pred             HHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccC
Confidence            9999999999999987665555556766668999999999999984    45788988889999999999999998   7


Q ss_pred             hhhchhhhcCCCceeeee
Q psy16115        200 TEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~  217 (258)
                      ++++.++|+++++...+.
T Consensus       253 ~~aL~~aL~~~~i~ga~l  270 (330)
T 2gcg_A          253 QDDLYQALASGKIAAAGL  270 (330)
T ss_dssp             HHHHHHHHHHTSSSEEEE
T ss_pred             HHHHHHHHHcCCccEEEe
Confidence            788899999888865444

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.83  E-value=1.3e-20  Score=169.95  Aligned_cols=190  Identities=15%  Similarity=0.157  Sum_probs=142.5

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcC----cccCCCEEEEEcCchHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTD----VMFGGKQVVLCGYGEVGK  122 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~l~g~~V~IiG~G~IG~  122 (258)
                      ++.|+++|+..+.++||+++.+++...|++.....    ..+.|.|......   ..+    .++.|++|+|||+|.||+
T Consensus        87 gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~w~~~~~~---~~~~~~~~~l~g~~vgIIG~G~iG~  159 (333)
T 2d0i_A           87 GIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADK----FIRRGEWESHAKI---WTGFKRIESLYGKKVGILGMGAIGK  159 (333)
T ss_dssp             TCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHTTCCCCHHHH---HTTSCCCCCSTTCEEEEECCSHHHH
T ss_pred             CcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHH----HHHcCCCCcCccc---ccCCcccCCCCcCEEEEEccCHHHH
Confidence            88999999999999999999998888888765332    2345667431100   113    468999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC
Q psy16115        123 GCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       123 ~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+|+.++.+|++|+++|+++.+ ..+.+.|+...+++++++++|+|++|.    .+.++++++.++.||++ +++|+||+
T Consensus       160 ~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg  237 (333)
T 2d0i_A          160 AIARRLIPFGVKLYYWSRHRKV-NVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRG  237 (333)
T ss_dssp             HHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCG
T ss_pred             HHHHHHHHCCCEEEEECCCcch-hhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCC
Confidence            9999999999999999998876 444455666668999999999999984    56789987789999999 99999999


Q ss_pred             ---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCc-eeEEecCCChhHH
Q psy16115        199 ---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNT-VIDLFRKPKSRLY  248 (258)
Q Consensus       199 ---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~-~~~l~~~~~~~~~  248 (258)
                         +++++.++|+++.+...++.-+..+ +.+...+-... .+  +-+||.+.+
T Consensus       238 ~~vd~~aL~~aL~~~~i~gaglDv~~~E-P~~~~~L~~~~~nv--iltPh~~~~  288 (333)
T 2d0i_A          238 ALVDEKAVTEAIKQGKLKGYATDVFEKE-PVREHELFKYEWET--VLTPHYAGL  288 (333)
T ss_dssp             GGBCHHHHHHHHHTTCBCEEEESCCSSS-SCSCCGGGGCTTTE--EECCSCTTC
T ss_pred             cccCHHHHHHHHHcCCceEEEecCCCCC-CCCCchHHcCCCCE--EEcCccCCC
Confidence               7778889999998876665433322 22233333333 22  235776543

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.83  E-value=6.3e-21  Score=168.80  Aligned_cols=156  Identities=17%  Similarity=0.227  Sum_probs=126.8

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...+++.|+..+.++||+++.+++...|++.....    ..+.|.|....       ..++.|+||||||+|.||+.+|+
T Consensus        71 ~~~~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~----~~~~g~w~~~~-------~~~l~g~tvGIIGlG~IG~~vA~  139 (290)
T 3gvx_A           71 NVVLCSNAGAYSISVAEHAFALLLAHAKNILENNE----LMKAGIFRQSP-------TTLLYGKALGILGYGGIGRRVAH  139 (290)
T ss_dssp             TSEEECCHHHHHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCCCC-------CCCCTTCEEEEECCSHHHHHHHH
T ss_pred             ceEEeecCCcceeeHHHHHHHHHHHHHHhhhhhhh----HhhhcccccCC-------ceeeecchheeeccCchhHHHHH
Confidence            34456667778899999999999888888765433    23456664321       14589999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      .++++|++|++||+++.+..     .... .++++++++||+|++|.    .+.++++++.++.||+|+++||+||+   
T Consensus       140 ~l~~~G~~V~~~dr~~~~~~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~v  214 (290)
T 3gvx_A          140 LAKAFGMRVIAYTRSSVDQN-----VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV  214 (290)
T ss_dssp             HHHHHTCEEEEECSSCCCTT-----CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGB
T ss_pred             HHHhhCcEEEEEeccccccc-----cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhccc
Confidence            99999999999999876432     1333 48999999999999983    57789999999999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeec
Q psy16115        199 NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~  218 (258)
                      +++++.++|+++++...++.
T Consensus       215 d~~aL~~aL~~g~i~ga~lD  234 (290)
T 3gvx_A          215 SKPDMIGFLKERSDVWYLSD  234 (290)
T ss_dssp             CHHHHHHHHHHCTTCEEEES
T ss_pred             CCcchhhhhhhccceEEeec
Confidence            89999999999998766553

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.83  E-value=8.8e-21  Score=173.45  Aligned_cols=169  Identities=14%  Similarity=0.112  Sum_probs=129.8

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++..++...++                |           +.++.|+||||||+|.||+.+|+
T Consensus        81 gI~v~n~pg~~~~~vAE~~l~~lL~l~r~----------------~-----------~~~l~g~tvGIIGlG~IG~~vA~  133 (380)
T 2o4c_A           81 GIAWSSAPGCNARGVVDYVLGCLLAMAEV----------------R-----------GADLAERTYGVVGAGQVGGRLVE  133 (380)
T ss_dssp             TCEEECCTTTTHHHHHHHHHHHHHHHHHH----------------H-----------TCCGGGCEEEEECCSHHHHHHHH
T ss_pred             CCEEEeCCCcChHHHHHHHHHHHHHHHhh----------------h-----------hcccCCCEEEEEeCCHHHHHHHH
Confidence            78899999999999999987766543321                0           23578999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----C----ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----G----NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~----~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .++++|++|+++|+++...    ..+....++++++++||+|++|.    .    +.++++++.++.||+|+++||+||+
T Consensus       134 ~l~~~G~~V~~~d~~~~~~----~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG  209 (380)
T 2o4c_A          134 VLRGLGWKVLVCDPPRQAR----EPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG  209 (380)
T ss_dssp             HHHHTTCEEEEECHHHHHH----STTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCG
T ss_pred             HHHHCCCEEEEEcCChhhh----ccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCC
Confidence            9999999999998755321    34556678999999999999984    3    7889998999999999999999999


Q ss_pred             ---ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHH
Q psy16115        199 ---NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLE  250 (258)
Q Consensus       199 ---~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  250 (258)
                         +++++.++|+++++...++.....+ +.+.+.+-+.   ..+.+||.+.++.
T Consensus       210 ~vvd~~aL~~aL~~g~i~~A~LDV~~~E-P~~~~~l~~~---nvi~TPHiag~t~  260 (380)
T 2o4c_A          210 AVVDNQALRRLLEGGADLEVALDVWEGE-PQADPELAAR---CLIATPHIAGYSL  260 (380)
T ss_dssp             GGBCHHHHHHHHHTTCCEEEEESCCTTT-TSCCHHHHTT---CSEECSSCTTCCH
T ss_pred             cccCHHHHHHHHHhCCCceEEeeeeccC-CCCchhhccC---CEEEccccCcCCH
Confidence               8899999999999866555332211 2222322222   1234799877543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.82  E-value=1.2e-20  Score=170.21  Aligned_cols=166  Identities=17%  Similarity=0.199  Sum_probs=131.0

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCc---chhhhccCcCcccCCCEEEEEcCchHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKP---SYYSLKRSTDVMFGGKQVVLCGYGEVGKG  123 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~l~g~~V~IiG~G~IG~~  123 (258)
                      ++.|++.|+..+.++||+++.+++...|++......    .+.|.|..   .+.. ....+.++.|++|+|||+|.||+.
T Consensus        90 gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~----~~~~~w~~~~~~~~~-~~~~~~~l~g~~vgIIG~G~iG~~  164 (334)
T 2dbq_A           90 GIYVTNTPDVLTDATADLAFALLLATARHVVKGDRF----VRSGEWKKRGVAWHP-KWFLGYDVYGKTIGIIGLGRIGQA  164 (334)
T ss_dssp             TCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHH----HHTSHHHHTTCCCCT-TTTCCCCCTTCEEEEECCSHHHHH
T ss_pred             CCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHH----HHcCCCccccccccc-ccccccCCCCCEEEEEccCHHHHH
Confidence            889999999999999999999988888887653322    23344420   0000 011245689999999999999999


Q ss_pred             HHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC-
Q psy16115        124 CCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS-  198 (258)
Q Consensus       124 ~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~-  198 (258)
                      +|+.++.+|++|+++|+++.+ ..+.+.|+...+++++++++|+|++|.    .+.++++++.++.||+++++||+|++ 
T Consensus       165 iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~  243 (334)
T 2dbq_A          165 IAKRAKGFNMRILYYSRTRKE-EVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGK  243 (334)
T ss_dssp             HHHHHHHTTCEEEEECSSCCH-HHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGG
T ss_pred             HHHHHHhCCCEEEEECCCcch-hhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCc
Confidence            999999999999999998876 444455666678999999999999984    35678987889999999999999999 


Q ss_pred             --ChhhchhhhcCCCceeeeec
Q psy16115        199 --NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       199 --~~~~~~~~l~~~~i~~~~~~  218 (258)
                        +++++.++|+++++...+..
T Consensus       244 ~v~~~aL~~aL~~~~i~ga~lD  265 (334)
T 2dbq_A          244 VVDTNALVKALKEGWIAGAGLD  265 (334)
T ss_dssp             GBCHHHHHHHHHHTSSSEEEES
T ss_pred             ccCHHHHHHHHHhCCeeEEEec
Confidence              67788899999888665443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.82  E-value=9e-20  Score=173.88  Aligned_cols=161  Identities=16%  Similarity=0.201  Sum_probs=133.9

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|...     ...+.++.|++++|||+|.||+.+|+
T Consensus        89 gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~----~~~~g~w~~~-----~~~~~~l~g~~vgIIG~G~IG~~vA~  159 (529)
T 1ygy_A           89 GVLVVNAPTSNIHSAAEHALALLLAASRQIPAADA----SLREHTWKRS-----SFSGTEIFGKTVGVVGLGRIGQLVAQ  159 (529)
T ss_dssp             TCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCGG-----GCCBCCCTTCEEEEECCSHHHHHHHH
T ss_pred             CeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHH----HHHhCCCccc-----CcCccccCCCEEEEEeeCHHHHHHHH
Confidence            88999999999999999999999988888865433    2355667421     11245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---C
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---N  199 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---~  199 (258)
                      .++++|++|++||+++.. ..+.+.|+...++++++++||+|++|+    .+.++++++.++.||+|++++|+|++   +
T Consensus       160 ~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~  238 (529)
T 1ygy_A          160 RIAAFGAYVVAYDPYVSP-ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  238 (529)
T ss_dssp             HHHTTTCEEEEECTTSCH-HHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             HHHhCCCEEEEECCCCCh-hHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhh
Confidence            999999999999998743 345566777678999999999999984    67789997789999999999999999   7


Q ss_pred             hhhchhhhcCCCceeeee
Q psy16115        200 TEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       200 ~~~~~~~l~~~~i~~~~~  217 (258)
                      ++++.++|+++++...+.
T Consensus       239 ~~aL~~al~~g~i~ga~l  256 (529)
T 1ygy_A          239 EAALADAITGGHVRAAGL  256 (529)
T ss_dssp             HHHHHHHHHTSSEEEEEE
T ss_pred             HHHHHHHHHcCCccEEEE
Confidence            778889999998865444

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.81  E-value=3.2e-20  Score=167.37  Aligned_cols=159  Identities=20%  Similarity=0.265  Sum_probs=129.8

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++.+++...|++.....    ..+.|.|....    ...+.++.|++|||||+|.||+.+|+
T Consensus       110 gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~----~~~~g~w~~~~----~~~~~~l~g~~vgIIG~G~iG~~vA~  181 (333)
T 3ba1_A          110 GVRVTNTPDVLTDDVADLAIGLILAVLRRICECDK----YVRRGAWKFGD----FKLTTKFSGKRVGIIGLGRIGLAVAE  181 (333)
T ss_dssp             TCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHH----HHHTTGGGGCC----CCCCCCCTTCCEEEECCSHHHHHHHH
T ss_pred             CcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHH----HHHcCCCCccc----cccccccCCCEEEEECCCHHHHHHHH
Confidence            78999999999999999999999988888765433    23445563110    01245789999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeecc----CccccccHHHHhcCCCCcEEEecCCC---
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT----GNKNVVTREHMDKMKNGCVVCNMGHS---  198 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~----~~~~~i~~~~l~~~k~g~~ivnvg~~---  198 (258)
                      .++.+|++|+++|+++.+.     .++. ..+++++++++|+|++|.    .+.++++++.++.||+++++||+||+   
T Consensus       182 ~l~~~G~~V~~~dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~v  256 (333)
T 3ba1_A          182 RAEAFDCPISYFSRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHV  256 (333)
T ss_dssp             HHHTTTCCEEEECSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGB
T ss_pred             HHHHCCCEEEEECCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchh
Confidence            9999999999999987643     2444 457999999999999984    46789988899999999999999999   


Q ss_pred             ChhhchhhhcCCCceeeeec
Q psy16115        199 NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       199 ~~~~~~~~l~~~~i~~~~~~  218 (258)
                      +++++.++|+++++...+..
T Consensus       257 d~~aL~~aL~~g~i~ga~lD  276 (333)
T 3ba1_A          257 DEPELVSALVEGRLGGAGLD  276 (333)
T ss_dssp             CHHHHHHHHHHTSSCEEEES
T ss_pred             CHHHHHHHHHcCCCeEEEEe
Confidence            78899999999988655543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.79  E-value=7.5e-20  Score=172.01  Aligned_cols=120  Identities=50%  Similarity=0.937  Sum_probs=102.9

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~  182 (258)
                      .+.++.|++|+|+|+|.||+.+|++++++|++|+++|+++.+...+...|+...+++++++++|+|+.|+++.++++++.
T Consensus       271 ~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~~t~~lI~~~~  350 (494)
T 3d64_A          271 TDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINHDH  350 (494)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECSSSSCSBCHHH
T ss_pred             cccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECCCcccccCHHH
Confidence            35568999999999999999999999999999999999998765566778888899999999999999999999999999


Q ss_pred             HhcCCCCcEEEecCCCC----hhhchhhhcCCCceeeeeccCcceeecCC
Q psy16115        183 MDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWEKVRSQVDHVIWPD  228 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~----~~~~~~~l~~~~i~~~~~~~~~~~~~~~~  228 (258)
                      |+.||+|++++|+||++    ++++ ++|++++|.     +..+.|+++.
T Consensus       351 l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-----~~~Dv~plp~  394 (494)
T 3d64_A          351 MKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-----PQVDHIIFPD  394 (494)
T ss_dssp             HHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-----TTEEEEECTT
T ss_pred             HhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-----eeEEEEECCC
Confidence            99999999999999993    3444 667666654     5556676654

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.78  E-value=4.8e-19  Score=165.97  Aligned_cols=157  Identities=41%  Similarity=0.718  Sum_probs=119.1

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.++|+|+..+ ++++..       .+++......    ...| |       .+..+.++.|++|+|+|+|.||+.+|+
T Consensus       215 Gilv~p~~~vn~-sVae~l-------~r~~~~~~~~----l~~g-w-------~r~~~~~l~GktVgIIG~G~IG~~vA~  274 (479)
T 1v8b_A          215 NELLFTAINVND-AVTKQK-------YDNVYGCRHS----LPDG-L-------MRATDFLISGKIVVICGYGDVGKGCAS  274 (479)
T ss_dssp             TCCCSEEEECTT-SHHHHT-------THHHHHHHHH----HHHH-H-------HHHHCCCCTTSEEEEECCSHHHHHHHH
T ss_pred             CCEEeccCCccH-HHHHHH-------HhchHhHHHH----Hhhh-h-------hhccccccCCCEEEEEeeCHHHHHHHH
Confidence            777888888777 777642       1222111110    1111 2       122345689999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCCh----hh
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT----EI  202 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~----~~  202 (258)
                      .++++|++|+++|+++.+...+...|+...+++++++++|+|++|+++.++++++.|+.||+|++++|+||++.    ++
T Consensus       275 ~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~a  354 (479)
T 1v8b_A          275 SMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNE  354 (479)
T ss_dssp             HHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHH
T ss_pred             HHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECCChhhhcCHHHHhhcCCCcEEEEeCCCCccccchh
Confidence            99999999999999998765667788888899999999999999999999999999999999999999999954    34


Q ss_pred             chh--hhcCCCceeeeeccCcceeecCC
Q psy16115        203 DVN--SLRTPDLTWEKVRSQVDHVIWPD  228 (258)
Q Consensus       203 ~~~--~l~~~~i~~~~~~~~~~~~~~~~  228 (258)
                      +.+  +|++++|.     +..+.|+++.
T Consensus       355 L~~~~AL~~g~I~-----a~lDv~plp~  377 (479)
T 1v8b_A          355 LFNYKGIHIENVK-----PQVDRITLPN  377 (479)
T ss_dssp             HHTSTTCEEEEEE-----TTEEEEECTT
T ss_pred             hhccccceeeeEe-----eeEEEEECCC
Confidence            445  55555544     4556676654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.70  E-value=1.5e-16  Score=149.89  Aligned_cols=109  Identities=50%  Similarity=0.916  Sum_probs=96.4

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      +..+.|++|+|+|+|.||+.+++.++.+|++|+++|+++.+...+.+.|++..+++++++++|+|++|+++.++++.+.+
T Consensus       269 ~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~~l  348 (494)
T 3ce6_A          269 DALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHI  348 (494)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSSSSCSBCHHHH
T ss_pred             CCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCCCHHHHHHHHH
Confidence            34579999999999999999999999999999999999998888888999878889999999999999999999988899


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCc
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDL  212 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i  212 (258)
                      +.||+|++++|+|+++.+++.++|..+.+
T Consensus       349 ~~mk~ggilvnvG~~~~eId~~aL~~~aL  377 (494)
T 3ce6_A          349 KAMKDHAILGNIGHFDNEIDMAGLERSGA  377 (494)
T ss_dssp             HHSCTTCEEEECSSSGGGBCHHHHHHTTC
T ss_pred             HhcCCCcEEEEeCCCCCccCHHHHHHhhh
Confidence            99999999999999965555555554444

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.62  E-value=9.8e-16  Score=143.45  Aligned_cols=133  Identities=47%  Similarity=0.803  Sum_probs=108.4

Q ss_pred             CcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc
Q psy16115         93 KPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus        93 ~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~  172 (258)
                      ...+.++.+..+.++.|++++|+|+|.||+.+|+.|+.+|++|+++|+++.+...+...+++..++++++..+|+++.++
T Consensus       249 ~sl~dgi~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at  328 (488)
T 3ond_A          249 HSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT  328 (488)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS
T ss_pred             HHHHHHHHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC
Confidence            33445555555667899999999999999999999999999999999999888778888888888999999999999999


Q ss_pred             CccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCC-CceeeeeccCcceee
Q psy16115        173 GNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTP-DLTWEKVRSQVDHVI  225 (258)
Q Consensus       173 ~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~-~i~~~~~~~~~~~~~  225 (258)
                      ++.++++.+.++.||++++++|+|+++.+.....+..- .+...........+.
T Consensus       329 G~~~vl~~e~l~~mk~gaiVvNaG~~~~Ei~~~~l~~~~~v~~~~i~~~v~~~~  382 (488)
T 3ond_A          329 GNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQTDRWV  382 (488)
T ss_dssp             SCSCSBCHHHHTTSCTTEEEEESSSTTTTBTHHHHHTSTTCEEEEEETTEEEEE
T ss_pred             CChhhhhHHHHHhcCCCeEEEEcCCCCcccchHHHHHhhhhheEEeeeeEEEEE
Confidence            99999998899999999999999999666666655542 223444445544444

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.62  E-value=1.9e-15  Score=133.61  Aligned_cols=122  Identities=19%  Similarity=0.213  Sum_probs=99.6

Q ss_pred             CCceEECC------hhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchH
Q psy16115         47 KSDVYLLP------KKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEV  120 (258)
Q Consensus        47 ~~~V~~lP------~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~I  120 (258)
                      ++.|++.|      .+.+.++|++++..++..                              .+.++.|++|+|+|+|.|
T Consensus       117 gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~------------------------------~~~~l~g~~v~IiG~G~i  166 (293)
T 3d4o_A          117 NRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH------------------------------TDFTIHGANVAVLGLGRV  166 (293)
T ss_dssp             TCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH------------------------------CSSCSTTCEEEEECCSHH
T ss_pred             CCeEEEecCCceeeeeccHhHHHHHHHHHHHh------------------------------cCCCCCCCEEEEEeeCHH
Confidence            78889988      677888888865432210                              123579999999999999


Q ss_pred             HHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc---cCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCC
Q psy16115        121 GKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV---VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       121 G~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~---~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      |+.+++.++.+|++|+++|+++.+...+.+.|+..   .+++++++++|+|+.|+.. ++++++.++.||++++++|++|
T Consensus       167 G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~~i~~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          167 GMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-LVVTANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-CCBCHHHHHHSCTTCEEEECSS
T ss_pred             HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-HHhCHHHHHhcCCCCEEEEecC
Confidence            99999999999999999999987765555667654   4678888999999999843 7888889999999999999999


Q ss_pred             CC
Q psy16115        198 SN  199 (258)
Q Consensus       198 ~~  199 (258)
                      ++
T Consensus       246 ~~  247 (293)
T 3d4o_A          246 KP  247 (293)
T ss_dssp             TT
T ss_pred             CC
Confidence            73

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.50  E-value=1.4e-13  Score=121.97  Aligned_cols=95  Identities=16%  Similarity=0.302  Sum_probs=82.6

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc---cCHHHHHHhCCeeeeccCccccccH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV---VKLNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~---~~l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      +.++.|++|+|+|+|.||+.+++.++.+|++|+++|+++.+...+.+.|++.   .+++++++++|+|+.|+.. +++++
T Consensus       152 ~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~~i~~  230 (300)
T 2rir_A          152 DYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-MILNQ  230 (300)
T ss_dssp             SSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-CCBCH
T ss_pred             CCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-hhhCH
Confidence            4568999999999999999999999999999999999987765555566652   4688888999999999865 78888


Q ss_pred             HHHhcCCCCcEEEecCCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~~  199 (258)
                      +.++.||+++++||+++++
T Consensus       231 ~~~~~mk~g~~lin~a~g~  249 (300)
T 2rir_A          231 TVLSSMTPKTLILDLASRP  249 (300)
T ss_dssp             HHHTTSCTTCEEEECSSTT
T ss_pred             HHHHhCCCCCEEEEEeCCC
Confidence            8999999999999999983

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=99.44  E-value=1.6e-13  Score=119.86  Aligned_cols=190  Identities=23%  Similarity=0.232  Sum_probs=135.5

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .++-|. |+|.+++++..-.++.+. .++++++..+...+.....+..+|...+.   .+.++
T Consensus        76 ~ell~~i~~lN~-D~~v~GIlvqlPlP~~id~~~i~~~I~p~-KDVDG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~~  153 (281)
T 2c2x_A           76 ATLNETIDELNA-NPDCTGYIVQLPLPKHLDENAALERVDPA-KDADGLHPTNLGRLVLGTPAPLPCTPRGIVHLLRRYD  153 (281)
T ss_dssp             HHHHHHHHHHHH-CTTCCEEEECSCCCTTSCHHHHHHHSCGG-GBTTSCCHHHHHHHHHTCCCCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEeCCCCCCCCHHHHHhhcCcc-CCccCCChhhHHHHhCCCCCCCCChHHHHHHHHHHcC
Confidence            678899999988 322 233332 899999887766666653 59999998887776655555556666553   23346


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhC--CCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      .++.|++++|+|.|. +|+.+|++|...  |++|++++++.             .++.+.++++|+||.+++.++++.++
T Consensus       154 i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t-------------~~L~~~~~~ADIVI~Avg~p~~I~~~  220 (281)
T 2c2x_A          154 ISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT-------------RDLPALTRQADIVVAAVGVAHLLTAD  220 (281)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC-------------SCHHHHHTTCSEEEECSCCTTCBCGG
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch-------------hHHHHHHhhCCEEEECCCCCcccCHH
Confidence            689999999999998 599999999999  89999997543             36788899999999999999999865


Q ss_pred             HHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      .   +|+|+++||+|....+.   . .-|.++ .........++..+|.+.+-|+.+|+.+
T Consensus       221 ~---vk~GavVIDVgi~r~~~---g-lvGDVd-~~v~~~a~~iTPVPGGVGpmT~a~Ll~n  273 (281)
T 2c2x_A          221 M---VRPGAAVIDVGVSRTDD---G-LVGDVH-PDVWELAGHVSPNPGGVGPLTRAFLLTN  273 (281)
T ss_dssp             G---SCTTCEEEECCEEEETT---E-EEESBC-GGGGGTCSEEECSSSSSHHHHHHHHHHH
T ss_pred             H---cCCCcEEEEccCCCCCC---C-ccCccc-cchhhheeeecCCCCCccHHHHHHHHHH
Confidence            4   69999999999872211   1 112333 3333333445555666666666555543

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=99.43  E-value=6.4e-13  Score=116.93  Aligned_cols=191  Identities=19%  Similarity=0.225  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHhCCCCC-CCCce-EECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDV-YLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V-~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..++.+|. |.+ .++-| .|+|.+++++..-.++.+ ..++++++..+...+.....+..+|...++   .+.++
T Consensus        97 ~ell~~I~~LN~-D~~V~GIlVQlPLP~hid~~~i~~~I~p-~KDVDG~hp~N~G~L~~g~~~~~PcTp~gv~~lL~~~~  174 (303)
T 4b4u_A           97 EQLLAEIEKLNA-NPDVHGILLQHPVPAQIDERACFDAISL-AKDVDGVTCLGFGRMAMGEAAYGSATPAGIMTILKENN  174 (303)
T ss_dssp             HHHHHHHHHHHT-CTTCCEEEECSSCCTTSCHHHHHHHSCG-GGCTTCCCHHHHHHHHTTCCCCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC-CCCccEEEEeCCCccccChHHHHhccCc-ccccCccCcchHHHhcCCCCcccCccHHHHHHHHHHHC
Confidence            678999999998 333 24433 289999988776566655 459999998887777666666666666653   34567


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.||+++|||.+. +|+.++.+|...|++|++++...             .++.+.+++||+++.+.|.++++..+  
T Consensus       175 i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T-------------~dl~~~~~~ADIvV~A~G~p~~i~~d--  239 (303)
T 4b4u_A          175 IEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT-------------QNLPELVKQADIIVGAVGKAELIQKD--  239 (303)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHHTCSEEEECSCSTTCBCGG--
T ss_pred             CCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC-------------CCHHHHhhcCCeEEeccCCCCccccc--
Confidence            889999999999999 89999999999999999986432             36788899999999999999999865  


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                       ++|+|+++||+|....+.   .+ -|.++..........+...++.+.+-|+-+|+.+
T Consensus       240 -~vk~GavVIDVGin~~~~---~~-vGDVdf~~v~~~a~~iTPVPGGVGPmTiamLl~N  293 (303)
T 4b4u_A          240 -WIKQGAVVVDAGFHPRDG---GG-VGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQ  293 (303)
T ss_dssp             -GSCTTCEEEECCCBCCTT---SC-BCSBCCTTGGGTCSEECCSSSSHHHHHHHHHHHH
T ss_pred             -cccCCCEEEEeceecCCC---Ce-ECCcCHHHHhhhCcEECCCCCCchHHHHHHHHHH
Confidence             579999999999762211   11 1444444444444445556666666566655553

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=99.42  E-value=1.5e-12  Score=114.05  Aligned_cols=192  Identities=17%  Similarity=0.191  Sum_probs=135.1

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .++++.+..+|. |.+ .++-|. |+|.+++++..-.++.+. .++++++..+...+.....+..+|...++   .+.++
T Consensus        77 ~ell~~I~~lN~-D~~V~GIlvqlPLP~~id~~~i~~~I~p~-KDVDG~~p~n~g~l~~g~~~~~PcTp~gi~~ll~~~~  154 (288)
T 1b0a_A           77 AELLELIDTLNA-DNTIDGILVQLPLPAGIDNVKVLERIHPD-KDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYN  154 (288)
T ss_dssp             HHHHHHHHHHHT-CTTCCEEEECSSCCTTSCHHHHHTTSCTT-TCTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcC-CCCCcEEEEeCCCCCCCCHHHHHhccCCc-cCcccCCccchhHHhCCCCCCCCCcHHHHHHHHHHcC
Confidence            678899999998 322 233332 899999887766666653 58999998887776655555556666553   33456


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++++|+|.|. +|+.+|++|...|++|++++++.             .++.+.+++||+||.+++.++++..+. 
T Consensus       155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~~~~ADIVI~Avg~p~lI~~~~-  220 (288)
T 1b0a_A          155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHHVENADLLIVAVGKPGFIPGDW-  220 (288)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHHHHHCSEEEECSCCTTCBCTTT-
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHhccCCEEEECCCCcCcCCHHH-
Confidence            789999999999997 69999999999999999997543             367888999999999999999998654 


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                        +|+|+++||+|....+.  ..| -|.++..........++..+|.+.+-|+-+|+.+
T Consensus       221 --vk~GavVIDVgi~r~~~--g~l-~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~N  274 (288)
T 1b0a_A          221 --IKEGAIVIDVGINRLEN--GKV-VGDVVFEDAAKRASYITPVPGGVGPMTVATLIEN  274 (288)
T ss_dssp             --SCTTCEEEECCCEECTT--SCE-ECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHH
T ss_pred             --cCCCcEEEEccCCccCC--CCc-cCCcCHHHHhhhccEecCCCCCccHHHHHHHHHH
Confidence              69999999999862210  000 0222222222223335555566665566555553

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.41  E-value=1.5e-12  Score=119.95  Aligned_cols=119  Identities=22%  Similarity=0.311  Sum_probs=92.1

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----------------------------C
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----------------------------K  157 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----------------------------~  157 (258)
                      .+.|++|+|+|+|.||+.+++.++.+|++|+++|+++.+++.+.+.|.+..                            +
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            468999999999999999999999999999999999998777777776533                            2


Q ss_pred             HHHHHHhCCeeeecc---C--ccccccHHHHhcCCCCcEEEecC--CC-Chhhch--h-hhcCCCceeeeeccCccee
Q psy16115        158 LNEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMG--HS-NTEIDV--N-SLRTPDLTWEKVRSQVDHV  224 (258)
Q Consensus       158 l~e~~~~aDvvi~~~---~--~~~~i~~~~l~~~k~g~~ivnvg--~~-~~~~~~--~-~l~~~~i~~~~~~~~~~~~  224 (258)
                      +++.+.++|+||.|+   +  ++.+++++.++.||+|++++|+|  ++ ..+...  + .+..+++.+.++...+..+
T Consensus       249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~~p~~~  326 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRL  326 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSCTGGGS
T ss_pred             HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCCCcccC
Confidence            567778899999994   2  44778889999999999999999  55 332211  1 2455667777765444443

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=99.41  E-value=2.6e-12  Score=112.44  Aligned_cols=151  Identities=22%  Similarity=0.240  Sum_probs=119.2

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh---ccCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL---KRSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~  104 (258)
                      .+++..+..+|. |.+ .++-|. |+|++++++..--++.+ ..++++++..+...+.....+..+|...+.   .+.++
T Consensus        79 ~ell~~I~~lN~-d~~v~GIlVqlPLP~~id~~~v~~~I~p-~KDVDG~~~~N~g~l~~g~~~~~PcTp~gv~~lL~~~~  156 (286)
T 4a5o_A           79 DDLLALIDRLND-DPAIDGILVQLPLPAHLDASLLLERIHP-DKDVDGFHPYNIGRLAQRMPLLRPCTPKGIMTLLASTG  156 (286)
T ss_dssp             HHHHHHHHHHHT-CTTCCEEEECSSCCTTSCHHHHHHTSCG-GGCTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC-CCCCCEEEEcCCCCCCcCHHHHHhhCCc-ccccccCChhhhHHHhcCCCCCCCCCHHHHHHHHHHhC
Confidence            678999999998 322 243332 88899988766556666 679999998887766555555566666553   33456


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .++.|++++|+|.|. +|+.+|.+|...|++|+++++..             .++++.+++||+||.+++.++++..+  
T Consensus       157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T-------------~~L~~~~~~ADIVI~Avg~p~~I~~~--  221 (286)
T 4a5o_A          157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT-------------RDLADHVSRADLVVVAAGKPGLVKGE--  221 (286)
T ss_dssp             CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHHHHTCSEEEECCCCTTCBCGG--
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC-------------cCHHHHhccCCEEEECCCCCCCCCHH--
Confidence            789999999999987 89999999999999999997532             36788899999999999999999864  


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                       ++|+|+++||+|..
T Consensus       222 -~vk~GavVIDvgi~  235 (286)
T 4a5o_A          222 -WIKEGAIVIDVGIN  235 (286)
T ss_dssp             -GSCTTCEEEECCSC
T ss_pred             -HcCCCeEEEEeccc
Confidence             46999999999986

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=99.40  E-value=2.6e-12  Score=112.48  Aligned_cols=190  Identities=18%  Similarity=0.238  Sum_probs=134.3

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc-CCCCCcchhhh---ccCc
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK-AGPFKPSYYSL---KRST  103 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~  103 (258)
                      .+++..+..+|. |.+ .++-|. |+|++++++..--++.+ ..++++++..+...+.... .+..+|...+.   .+.+
T Consensus        78 ~ell~~I~~lN~-d~~v~GIlvqlPlp~~id~~~v~~~I~p-~KDVDG~~~~N~G~l~~g~~~~~~PcTp~gv~~lL~~~  155 (285)
T 3l07_A           78 SELLELIDQLNN-DSSVHAILVQLPLPAHINKNNVIYSIKP-EKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREY  155 (285)
T ss_dssp             HHHHHHHHHHHT-CTTCCEEEECSSCCTTSCHHHHHHHSCG-GGBTTCCSHHHHHHHHHTCTTCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-CCCCcEEEEcCCCCCCcCHHHHHhhCCc-ccccccCChhheeehhcCCCCCCCCCCHHHHHHHHHHh
Confidence            678999999998 322 243332 88899988766566666 6799999987777665544 55556666553   3345


Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~  182 (258)
                      +.++.|++++|+|.|. +|+.+|++|...|++|+++++..             .++++.++++|+||.+++.++++.++ 
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~~~~ADIVI~Avg~p~~I~~~-  221 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGKPNFITAD-  221 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHTTCSEEEECCCCTTCBCGG-
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHhcccCCEEEECCCCCCCCCHH-
Confidence            6789999999999998 79999999999999999997532             36788899999999999999999864 


Q ss_pred             HhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115        183 MDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR  241 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  241 (258)
                        ++|+|+++||+|....+   ..| -|.++..........+...++.+.+-|+-+|+.
T Consensus       222 --~vk~GavVIDvgi~~~~---g~l-~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~  274 (285)
T 3l07_A          222 --MVKEGAVVIDVGINHVD---GKI-VGDVDFAAVKDKVAAITPVPGGVGPMTITELLY  274 (285)
T ss_dssp             --GSCTTCEEEECCCEEET---TEE-ECSBCHHHHTTTCSEECCSSSSSHHHHHHHHHH
T ss_pred             --HcCCCcEEEEecccCcC---Cce-ecCccHHHHHhhheEeCCCCCcChHHHHHHHHH
Confidence              56999999999976321   000 122232233333333455556666555555554

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=99.39  E-value=3e-12  Score=112.13  Aligned_cols=151  Identities=19%  Similarity=0.303  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCC-CCCcchhhh---ccCc
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG-PFKPSYYSL---KRST  103 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~---~~~~  103 (258)
                      .+++..+..+|. |.+ .++.|. |+|++++++..--++.+ ..++++++..+...+.....+ ..+|...+.   .+.+
T Consensus        77 ~ell~~I~~lN~-d~~v~GIlvqlPlp~~id~~~v~~~I~p-~KDVDg~~~~N~g~l~~g~~~g~~PcTp~gv~~lL~~~  154 (285)
T 3p2o_A           77 NELLALINTLNH-DDSVHGILVQLPLPDHICKDLILESIIS-SKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAY  154 (285)
T ss_dssp             HHHHHHHHHHHH-CTTCCEEEECSCCCTTSCHHHHHHHSCG-GGCTTCCSHHHHHHHHTTCCSSCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-CCCCCEEEecCCCCCCcCHHHHHhhCCc-ccccccCCHhhhhhhhcCCCCCCCCCCHHHHHHHHHHh
Confidence            678899999988 322 244332 88999988766556666 669999998777666544443 556666553   3345


Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~  182 (258)
                      +.++.|++++|+|.|. +|+.+|.+|...|++|++++++.             .++++.+++||+||.+++.++++.++ 
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-------------~~L~~~~~~ADIVI~Avg~p~~I~~~-  220 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAGCVNLLRSD-  220 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHHHTTCSEEEECSSCTTCBCGG-
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHhhcCCEEEECCCCCCcCCHH-
Confidence            6789999999999998 79999999999999999997542             35788899999999999999999864 


Q ss_pred             HhcCCCCcEEEecCCC
Q psy16115        183 MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~  198 (258)
                        ++|+|+++||+|..
T Consensus       221 --~vk~GavVIDVgi~  234 (285)
T 3p2o_A          221 --MVKEGVIVVDVGIN  234 (285)
T ss_dssp             --GSCTTEEEEECCCE
T ss_pred             --HcCCCeEEEEeccC
Confidence              56999999999976

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=99.39  E-value=3.3e-12  Score=111.25  Aligned_cols=189  Identities=17%  Similarity=0.206  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhc---cCcC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLK---RSTD  104 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~  104 (258)
                      .+++..+..+|. |.+ .++-|. |+|++++++..--++.+ ..++++++..+...+.....+..+|...++.   +.++
T Consensus        70 ~ell~~I~~lN~-D~~v~GIlvqlPLP~~id~~~v~~~I~p-~KDVDG~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~~  147 (276)
T 3ngx_A           70 KDLLKRIDDLAK-DPQINGIMIENPLPKGFDYYEIVRNIPY-YKDVDALSPYNQGLIALNREFLVPATPRAVIDIMDYYG  147 (276)
T ss_dssp             HHHHHHHHHHHH-CTTCCEEEECSCCCTTCCHHHHHTTSCG-GGBTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcC-CCCCcEEEEeCCCCCCCCHHHHHhhCCC-CCcccCCCccchhhhhcCCCCCCCCcHHHHHHHHHHhC
Confidence            678999999998 322 233332 88999988877666655 4599999988877776666666666666632   2233


Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                        +.|++++|+|.|. +|+.+|++|...|++|++++++             ..++++.+++||+||.+++.++++.++  
T Consensus       148 --l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~-------------t~~L~~~~~~ADIVI~Avg~p~~I~~~--  210 (276)
T 3ngx_A          148 --YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK-------------TKDIGSMTRSSKIVVVAVGRPGFLNRE--  210 (276)
T ss_dssp             --CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSCHHHHHHHSSEEEECSSCTTCBCGG--
T ss_pred             --cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC-------------cccHHHhhccCCEEEECCCCCccccHh--
Confidence              8999999999996 8999999999999999999753             246788999999999999999999864  


Q ss_pred             hcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        184 DKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                       ++|+|+++||+|... +.  ..| -|.++..........+...++.+.+-|+-+|+.+
T Consensus       211 -~vk~GavVIDvgi~~-~~--gkl-~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~n  264 (276)
T 3ngx_A          211 -MVTPGSVVIDVGINY-VN--DKV-VGDANFEDLSEYVEAITPVPGGVGPITATNILEN  264 (276)
T ss_dssp             -GCCTTCEEEECCCEE-ET--TEE-ECSBCHHHHHTTSSEECCTTTSSHHHHHHHHHHH
T ss_pred             -hccCCcEEEEeccCc-cC--Cce-eccccHHHHhhhceEeCCCCCcChHHHHHHHHHH
Confidence             469999999999753 10  000 1222222232333334555666666566555553

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.38  E-value=2.1e-12  Score=118.30  Aligned_cols=116  Identities=20%  Similarity=0.254  Sum_probs=89.5

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---C-------------------------
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---K-------------------------  157 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~-------------------------  157 (258)
                      .+.|++|+|+|+|.||+.+++.++.+|++|+++|+++.+.+.+.+.|.+..   .                         
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            468999999999999999999999999999999999988777777776533   1                         


Q ss_pred             --HHHHHHhCCeeeecc---C--ccccccHHHHhcCCCCcEEEecC--CC-Chhh--chhhhcCCCceeeeeccCc
Q psy16115        158 --LNEVIRTVDIVVTAT---G--NKNVVTREHMDKMKNGCVVCNMG--HS-NTEI--DVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       158 --l~e~~~~aDvvi~~~---~--~~~~i~~~~l~~~k~g~~ivnvg--~~-~~~~--~~~~l~~~~i~~~~~~~~~  221 (258)
                        +++.++++|+||.|+   +  ++.+++++.++.||+|++++|+|  ++ ..+.  ....+..+++++.++...+
T Consensus       249 ~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~p  324 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVP  324 (384)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSGG
T ss_pred             HHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCCc
Confidence              566778899999987   5  34578889999999999999999  54 3221  2223444566666654433

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=99.38  E-value=3.9e-12  Score=112.12  Aligned_cols=196  Identities=17%  Similarity=0.172  Sum_probs=137.6

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhcc--cCCCCCcchhhh---ccC
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLN--KAGPFKPSYYSL---KRS  102 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~---~~~  102 (258)
                      .+++..+..+|. |.+ .++-|. |+|.+++++..--++.+ ..++++++..+...+...  ..+..+|...+.   .+.
T Consensus        81 ~ell~~I~~lN~-d~~v~GIlVqlPLP~~id~~~v~~~I~p-~KDVDG~~~~N~G~l~~g~~~~~~~PcTp~gv~~lL~~  158 (300)
T 4a26_A           81 EVLEVNVEKLNN-DPNCHGIIVQLPLPKHLNENRAIEKIHP-HKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKR  158 (300)
T ss_dssp             HHHHHHHHHHHT-CTTCCEEEECSCCCTTSCHHHHHHTSCG-GGCTTCCSHHHHHHHHCTTCCCSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEcCCCCCCCCHHHHHhhCCc-ccccccCCcceEEEeecCCCcCCCCCCCHHHHHHHHHH
Confidence            679999999998 322 243332 88999988776666666 679999998877666544  345556666553   334


Q ss_pred             cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHH--HHHHhCCeeeeccCcccccc
Q psy16115        103 TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLN--EVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~--e~~~~aDvvi~~~~~~~~i~  179 (258)
                      ++.++.|++++|+|.|. +|+.+|++|...|++|+++++...             +++  +.+++||+||.+++.++++.
T Consensus       159 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~-------------~l~l~~~~~~ADIVI~Avg~p~~I~  225 (300)
T 4a26_A          159 CGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS-------------TEDMIDYLRTADIVIAAMGQPGYVK  225 (300)
T ss_dssp             HTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC-------------HHHHHHHHHTCSEEEECSCCTTCBC
T ss_pred             cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC-------------CchhhhhhccCCEEEECCCCCCCCc
Confidence            56789999999999988 799999999999999999986432             344  88999999999999999998


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhchhh---hcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDVNS---LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~~~---l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      ++   ++|+|+++||+|....+..-..   ---|.++..........+...++.+.+-|+-+|+.+.
T Consensus       226 ~~---~vk~GavVIDvgi~~~~~~~~~~g~kl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Nt  289 (300)
T 4a26_A          226 GE---WIKEGAAVVDVGTTPVPDPSRKDGYRLVGDVCFEEAAARAAWISPVPGGVGPMTIAMLLENT  289 (300)
T ss_dssp             GG---GSCTTCEEEECCCEEESCSCSTTSCEEECSBCHHHHTTTCSEEECTTTSSSHHHHHHHHHHH
T ss_pred             HH---hcCCCcEEEEEeccCCcCCcccCCceeecCccHHHHHhhceEeCCCCCcChHHHHHHHHHHH
Confidence            54   4799999999997621110000   0012333333333344456667777777777666644

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.37  E-value=2.5e-13  Score=122.49  Aligned_cols=175  Identities=14%  Similarity=0.193  Sum_probs=123.1

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...++++|+.++.+.|++. .+.......+                       .+.  .--+|++|+|+|+|.||+.+++
T Consensus       133 ~~~~~~iP~~~~~~~aa~~-~~~~ta~~al-----------------------~~~--~~~~g~~VlV~GaG~vG~~a~q  186 (352)
T 1e3j_A          133 ADFCHKLPDNVSLEEGALL-EPLSVGVHAC-----------------------RRA--GVQLGTTVLVIGAGPIGLVSVL  186 (352)
T ss_dssp             GGGEEECCTTSCHHHHHTH-HHHHHHHHHH-----------------------HHH--TCCTTCEEEEECCSHHHHHHHH
T ss_pred             hHHeEECcCCCCHHHHHhh-chHHHHHHHH-----------------------Hhc--CCCCCCEEEEECCCHHHHHHHH
Confidence            3468899999999888753 2222111111                       000  0127899999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcc-------cC-HHHH---HH-----hCCeeeeccCccccccHHHHhcCCCCc
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSV-------VK-LNEV---IR-----TVDIVVTATGNKNVVTREHMDKMKNGC  190 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-------~~-l~e~---~~-----~aDvvi~~~~~~~~i~~~~l~~~k~g~  190 (258)
                      .++.+|++|+++++++++.+.+++.|++.       .+ .+++   ..     ..|+++.+++....+. +.++.+++++
T Consensus       187 la~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~-~~~~~l~~~G  265 (352)
T 1e3j_A          187 AAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCIT-IGINITRTGG  265 (352)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHH-HHHHHSCTTC
T ss_pred             HHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCCCHHHHH-HHHHHHhcCC
Confidence            99999999999999999888888888642       11 1222   22     4899999998776665 7889999999


Q ss_pred             EEEecCCCC--hhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115        191 VVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       191 ~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      +++.+|...  .......+..+++++.++..+.+.|.         .++.|+.+++.++...|++++||
T Consensus       266 ~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~---------~~~~l~~~g~i~~~~~i~~~~~l  325 (352)
T 1e3j_A          266 TLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYP---------IALEMVASGRCNVKQLVTHSFKL  325 (352)
T ss_dssp             EEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCHH---------HHHHHHHTTSCCCGGGEEEEEEG
T ss_pred             EEEEEecCCCCccccHHHHHhcCcEEEEeccchHHHH---------HHHHHHHcCCCChHHheeEEecH
Confidence            999999762  33344556677888887754433344         45566666666666667777775

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=99.37  E-value=6.5e-12  Score=110.70  Aligned_cols=199  Identities=17%  Similarity=0.180  Sum_probs=137.9

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChh--hhHHHHhcccCccccccccCCHHHHHhhhccc--CCCCCcchhhh---c
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKK--MDEYVASLHLPTFDAHLTELSDEQAKYMGLNK--AGPFKPSYYSL---K  100 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~--~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~---~  100 (258)
                      .++++.+..+|. |.+ .++-|. |+|.+  ++++..-.++.+ ..++++++..+...+....  .+..+|+..++   .
T Consensus        79 ~ell~~I~~lN~-D~~V~GIlvqlPLP~~~~id~~~i~~~I~p-~KDVDG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll  156 (301)
T 1a4i_A           79 SEVMKYITSLNE-DSTVHGFLVQLPLDSENSINTEEVINAIAP-EKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELI  156 (301)
T ss_dssp             HHHHHHHHHHHH-CTTCCEEEECSSCCCSSCCCHHHHHHTSCG-GGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCCcEEEEeccCCCCCccCHHHHHhccCC-CCCccCCChhhHHHHhcCCCCCCccCchHHHHHHHH
Confidence            578899999988 322 233332 89999  988766566655 3599999988776665443  44555666553   3


Q ss_pred             cCcCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc
Q psy16115        101 RSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       101 ~~~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      +.++.++.|++++|+|.|. +|+.+|++|...|++|++++++             ..++.+.+++||+||.+++.++++.
T Consensus       157 ~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------t~~L~~~~~~ADIVI~Avg~p~~I~  223 (301)
T 1a4i_A          157 KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK-------------TAHLDEEVNKGDILVVATGQPEMVK  223 (301)
T ss_dssp             HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSSHHHHHTTCSEEEECCCCTTCBC
T ss_pred             HHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC-------------cccHHHHhccCCEEEECCCCcccCC
Confidence            3456789999999999997 7999999999999999999753             2367889999999999999999998


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhch--hh-hcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDV--NS-LRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~--~~-l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                      .+.   +|+|+++||+|....+..-  +. ---|.++..........++..+|.+.+-|+-+|+.+.-.+
T Consensus       224 ~~~---vk~GavVIDVgi~~~~d~~~~~g~klvGDVdf~~v~~~a~~iTPVPGGVGpmTiamLl~Ntv~a  290 (301)
T 1a4i_A          224 GEW---IKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVES  290 (301)
T ss_dssp             GGG---SCTTCEEEECCCBC----------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHH---cCCCcEEEEccCCCcccccccCCCeeeccccHHHhhhhceEeCCCCCCccHHHHHHHHHHHHHH
Confidence            654   6899999999987222100  00 0013333333434444456666777666666666544333

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.36  E-value=2e-13  Score=123.41  Aligned_cols=175  Identities=15%  Similarity=0.229  Sum_probs=122.5

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...++++|+.++.+.|++. .++...+..+                       .+  ..--+|++|+|+|+|.||+.+++
T Consensus       136 ~~~~~~iP~~l~~~~aa~~-~~~~ta~~al-----------------------~~--~~~~~g~~VlV~GaG~vG~~aiq  189 (356)
T 1pl8_A          136 AAFCYKLPDNVTFEEGALI-EPLSVGIHAC-----------------------RR--GGVTLGHKVLVCGAGPIGMVTLL  189 (356)
T ss_dssp             GGGEEECCTTSCHHHHHHH-HHHHHHHHHH-----------------------HH--HTCCTTCEEEEECCSHHHHHHHH
T ss_pred             hHHEEECcCCCCHHHHHhh-chHHHHHHHH-----------------------Hh--cCCCCCCEEEEECCCHHHHHHHH
Confidence            3468899999998888753 2222111111                       00  00127999999999999999999


Q ss_pred             HHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c--C---HHH---HH-----HhCCeeeeccCccccccHHHHhcCCCCcE
Q psy16115        127 SLKGLGC-VIYITEIDPICALQACMDGFSV-V--K---LNE---VI-----RTVDIVVTATGNKNVVTREHMDKMKNGCV  191 (258)
Q Consensus       127 ~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~--~---l~e---~~-----~~aDvvi~~~~~~~~i~~~~l~~~k~g~~  191 (258)
                      .++.+|+ +|+++++++.+.+.+++.|++. .  .   .++   .+     .+.|+++.+++....+. +.++.++++++
T Consensus       190 lak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~-~~~~~l~~~G~  268 (356)
T 1pl8_A          190 VAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQ-AGIYATRSGGT  268 (356)
T ss_dssp             HHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHH-HHHHHSCTTCE
T ss_pred             HHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCChHHHH-HHHHHhcCCCE
Confidence            9999999 8999999999888888888752 1  1   112   12     14899999998776665 78999999999


Q ss_pred             EEecCCCC--hhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115        192 VCNMGHSN--TEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       192 ivnvg~~~--~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      ++.+|...  .......+..+++++.++..+.+.|.         .++.|+..++.++...|++++||
T Consensus       269 iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~---------~~~~l~~~g~i~~~~~i~~~~~l  327 (356)
T 1pl8_A          269 LVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWP---------VAISMLASKSVNVKPLVTHRFPL  327 (356)
T ss_dssp             EEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCHH---------HHHHHHHTTSCCCGGGEEEEEEG
T ss_pred             EEEEecCCCCCccCHHHHHhcceEEEEecccHHHHH---------HHHHHHHcCCCChHHheEEEecH
Confidence            99999762  23334455567788877654433344         55666666666666677777775

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.33  E-value=5.5e-12  Score=114.96  Aligned_cols=92  Identities=24%  Similarity=0.292  Sum_probs=79.5

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--------------------------CHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--------------------------KLNE  160 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--------------------------~l~e  160 (258)
                      +++++|+|+|+|.||+.+++.++.+|++|+++|+++.+++.+.+.|.++.                          ++++
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            58899999999999999999999999999999999998887777766432                          3567


Q ss_pred             HHHhCCeeeecc-----CccccccHHHHhcCCCCcEEEecCCC
Q psy16115        161 VIRTVDIVVTAT-----GNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       161 ~~~~aDvvi~~~-----~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .++++|+||.+.     .++.+++++.++.||+|++|||++..
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d  304 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGE  304 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGG
T ss_pred             HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCC
Confidence            788999999874     34568999999999999999999854

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=99.33  E-value=5.4e-12  Score=112.54  Aligned_cols=164  Identities=16%  Similarity=0.137  Sum_probs=117.2

Q ss_pred             hHHHHHHHHHhCCCCC-CCCceE-ECChhhhHHHHhcccCccccccccCCHHHHHhhhccc---------CCCCCcchhh
Q psy16115         30 PQALALIELFNAPAGR-YKSDVY-LLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNK---------AGPFKPSYYS   98 (258)
Q Consensus        30 ~~~l~~~~l~~~~~~~-~~~~V~-~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~~~~~   98 (258)
                      .+++..+..+|. |.+ .|+-|. |+|++++++..--++.+ ..++++++..+...+....         .+..+|...+
T Consensus        77 ~~l~~~i~~lN~-d~~v~GIlvqlPlp~~~~~~~i~~~I~p-~KDVDG~~~~n~g~l~~~~~~l~~~~~~~~~~PcTp~a  154 (320)
T 1edz_A           77 DFLEEAIIQANG-DDSVNGIMVYFPVFGNAQDQYLQQVVCK-EKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLA  154 (320)
T ss_dssp             GGHHHHHHHHHH-CTTCCEEEECSCSSSSHHHHHHTTTSCT-TTBTTCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHH
T ss_pred             HHHHHHHHHHcC-CCCCCEEEEeCCCCCCCCHHHHHhccCc-ccccCcCChhhhHHHhcCCccccccccCCCcCCCcHHH
Confidence            458888899988 322 244443 89999988876666655 4589999987766554331         2334444444


Q ss_pred             h----ccC--------cCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHH-HHHhCCC---cc------
Q psy16115         99 L----KRS--------TDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL-QACMDGF---SV------  155 (258)
Q Consensus        99 ~----~~~--------~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~g~---~~------  155 (258)
                      .    .+.        ++.++.|++++|||.|. +|+.+|++|...|++|+++|++..+.. .+...+.   ..      
T Consensus       155 ~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t  234 (320)
T 1edz_A          155 IVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEY  234 (320)
T ss_dssp             HHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEEC
T ss_pred             HHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccc
Confidence            2    221        45678999999999997 599999999999999999998744321 1111111   11      


Q ss_pred             --cCHHHHHHhCCeeeeccCcccc-ccHHHHhcCCCCcEEEecCCC
Q psy16115        156 --VKLNEVIRTVDIVVTATGNKNV-VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       156 --~~l~e~~~~aDvvi~~~~~~~~-i~~~~l~~~k~g~~ivnvg~~  198 (258)
                        .++++.++++|+||.+++.++. ++.+.   +|+|++++|+|..
T Consensus       235 ~~~~L~e~l~~ADIVIsAtg~p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          235 SEDLLKKCSLDSDVVITGVPSENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             CHHHHHHHHHHCSEEEECCCCTTCCBCTTT---SCTTEEEEECSSS
T ss_pred             cHhHHHHHhccCCEEEECCCCCcceeCHHH---cCCCeEEEEcCCC
Confidence              4678889999999999999887 87554   6999999999987

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.32  E-value=9.7e-14  Score=126.33  Aligned_cols=140  Identities=19%  Similarity=0.134  Sum_probs=111.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH--------hCCeeeecc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR--------TVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~--------~aDvvi~~~  172 (258)
                      +|++|+|+|+|.+|+..++.++.+|+ +|+++++++.+.+.+++.|++.      .++.+.+.        +.|+++.++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            79999999999999999999999999 8999999999988888888752      23444444        379999999


Q ss_pred             CccccccHHHHhcCCCCcEEEecCCCC----hhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHH
Q psy16115        173 GNKNVVTREHMDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLY  248 (258)
Q Consensus       173 ~~~~~i~~~~l~~~k~g~~ivnvg~~~----~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~  248 (258)
                      +....+. +.++.++++++++.+|...    .+.....+..+++++.++......|.         .++.|+..++.++.
T Consensus       262 G~~~~~~-~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~---------~~~~l~~~g~i~~~  331 (370)
T 4ej6_A          262 GVAETVK-QSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVHR---------RAADLVATGAIEID  331 (370)
T ss_dssp             CCHHHHH-HHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCTTCHH---------HHHHHHHTTCSCCG
T ss_pred             CCHHHHH-HHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccChHHHH---------HHHHHHHcCCCChh
Confidence            8777775 8899999999999998752    23445566677888888766554454         56677777777777


Q ss_pred             HHHhhhcCC
Q psy16115        249 LEILQTCPL  257 (258)
Q Consensus       249 ~~~~~~~~~  257 (258)
                      ..|++++||
T Consensus       332 ~~i~~~~~l  340 (370)
T 4ej6_A          332 RMISRRISL  340 (370)
T ss_dssp             GGEEEEECG
T ss_pred             HcEEEEEEH
Confidence            788888886

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.30  E-value=1.1e-11  Score=113.89  Aligned_cols=91  Identities=29%  Similarity=0.416  Sum_probs=78.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------------------------------c
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------------------------------V  156 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------------------------------~  156 (258)
                      +++.+|+|+|+|.||+.+++.++.+|++|+++|+++.+++.+.+.|.++                              .
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            5789999999999999999999999999999999999877777666542                              1


Q ss_pred             CHHHHHHhCCeeeecc-----CccccccHHHHhcCCCCcEEEecCC
Q psy16115        157 KLNEVIRTVDIVVTAT-----GNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       157 ~l~e~~~~aDvvi~~~-----~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      ++++.++++|+||.+.     .++.+++++.++.||+|++|||++.
T Consensus       268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence            4667788999999983     3556899999999999999999994

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.30  E-value=1.2e-11  Score=112.99  Aligned_cols=92  Identities=20%  Similarity=0.267  Sum_probs=77.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc-------ccCHHHHHHhCCeeeecc-----
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-------VVKLNEVIRTVDIVVTAT-----  172 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~-------~~~l~e~~~~aDvvi~~~-----  172 (258)
                      ++.|++|+|+|+|.||+.+++.++.+|++|+++|+++.+++.+.+ .|..       ..++++.++++|+|+.|+     
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~  244 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA  244 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            478999999999999999999999999999999999988765554 4543       235678888999999975     


Q ss_pred             CccccccHHHHhcCCCCcEEEecCC
Q psy16115        173 GNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       173 ~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      .++.+++++.++.||+|++++|+|.
T Consensus       245 ~t~~li~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          245 KAPKLVSNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             CCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred             CCcceecHHHHhcCCCCcEEEEEec
Confidence            3456778899999999999999994

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.28  E-value=6.8e-13  Score=120.07  Aligned_cols=174  Identities=18%  Similarity=0.147  Sum_probs=122.1

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...++++|+ ++.+.|++. .+....++.+                       .+. + --+|++|+|+|+|.||+.+++
T Consensus       145 ~~~~~~iP~-~s~~~aa~~-~~~~ta~~~l-----------------------~~~-~-~~~g~~VlV~GaG~vG~~aiq  197 (363)
T 3m6i_A          145 AVWCHKIGN-MSYENGAML-EPLSVALAGL-----------------------QRA-G-VRLGDPVLICGAGPIGLITML  197 (363)
T ss_dssp             GGGEEECTT-CCHHHHHHH-HHHHHHHHHH-----------------------HHH-T-CCTTCCEEEECCSHHHHHHHH
T ss_pred             hhhEEECCC-CCHHHHHhh-hHHHHHHHHH-----------------------HHc-C-CCCCCEEEEECCCHHHHHHHH
Confidence            346889999 999888764 2322211111                       000 0 127999999999999999999


Q ss_pred             HHHhCCCE-EEEEeCChhhHHHHHhCCCcc----------cCHHHHHH------hCCeeeeccCccccccHHHHhcCCCC
Q psy16115        127 SLKGLGCV-IYITEIDPICALQACMDGFSV----------VKLNEVIR------TVDIVVTATGNKNVVTREHMDKMKNG  189 (258)
Q Consensus       127 ~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~----------~~l~e~~~------~aDvvi~~~~~~~~i~~~~l~~~k~g  189 (258)
                      .++.+|++ |++++.++++.+.+++.+...          .++.+.+.      +.|+++.+++....+. ..++.++++
T Consensus       198 lak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~-~~~~~l~~~  276 (363)
T 3m6i_A          198 CAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIA-AAIWAVKFG  276 (363)
T ss_dssp             HHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHH-HHHHHSCTT
T ss_pred             HHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHH-HHHHHhcCC
Confidence            99999997 999999999887776652111          11222222      4799999998877775 789999999


Q ss_pred             cEEEecCCC--ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115        190 CVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       190 ~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      ++++.+|..  +.......+..+++++.++..+.+.|.         .++.|+..++.++...|++++||
T Consensus       277 G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~---------~~~~l~~~g~i~~~~~i~~~~~l  337 (363)
T 3m6i_A          277 GKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWP---------RAIRLVENGLVDLTRLVTHRFPL  337 (363)
T ss_dssp             CEEEECCCCCSCCCCCHHHHHHHTCEEEECCSCSSCHH---------HHHHHHHTTSSCCGGGEEEEEEG
T ss_pred             CEEEEEccCCCCccccHHHHHhcCcEEEEccCCHHHHH---------HHHHHHHhCCCChHHceeeeeeH
Confidence            999999976  333444455666778777755444455         56667777777677778888776

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.25  E-value=6.7e-13  Score=119.70  Aligned_cols=174  Identities=18%  Similarity=0.149  Sum_probs=121.8

Q ss_pred             ceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHH
Q psy16115         49 DVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSL  128 (258)
Q Consensus        49 ~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l  128 (258)
                      .++++|+.++.+.|.+...+....++.                       +.+  ...-+|++|+|+|.|.||+..++.+
T Consensus       132 ~~~~iP~~~~~~~aa~~~~~~~ta~~a-----------------------l~~--~~~~~g~~VlV~GaG~vG~~a~qla  186 (352)
T 3fpc_A          132 NLAHLPKEIPLEAAVMIPDMMTTGFHG-----------------------AEL--ANIKLGDTVCVIGIGPVGLMSVAGA  186 (352)
T ss_dssp             HCEECCTTSCHHHHTTTTTHHHHHHHH-----------------------HHH--TTCCTTCCEEEECCSHHHHHHHHHH
T ss_pred             eEEECCCCCCHHHHhhccchhHHHHHH-----------------------HHh--cCCCCCCEEEEECCCHHHHHHHHHH
Confidence            588999999998886542222211111                       110  0012799999999999999999999


Q ss_pred             HhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCccccccHHHHhcCCCCcEEEec
Q psy16115        129 KGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGNKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       129 ~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                      +..|+ +|+++|+++.+++.+++.|++.      .++.+.+.      +.|+++.+++....+. +.++.++++++++.+
T Consensus       187 ~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~-~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          187 NHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFA-QAVKMIKPGSDIGNV  265 (352)
T ss_dssp             HTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSCTTHHH-HHHHHEEEEEEEEEC
T ss_pred             HHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCChHHHH-HHHHHHhcCCEEEEe
Confidence            99999 7999999999888888888752      12333332      3799999998877775 889999999999999


Q ss_pred             CCC--Chhhchhhhc----CCCceeeeeccC--cceeecCCCccCCCceeEEecCCChhHHHHHhhhcC-C
Q psy16115        196 GHS--NTEIDVNSLR----TPDLTWEKVRSQ--VDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCP-L  257 (258)
Q Consensus       196 g~~--~~~~~~~~l~----~~~i~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~  257 (258)
                      |..  +....+..+.    .+++++.+....  .+.|.         .++.|+++++.+....|+|++| |
T Consensus       266 G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~---------~~~~l~~~g~i~~~~~i~~~~~gl  327 (352)
T 3fpc_A          266 NYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRLRME---------RLIDLVFYKRVDPSKLVTHVFRGF  327 (352)
T ss_dssp             CCCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHHHHH---------HHHHHHHTTSCCGGGGEEEEEEST
T ss_pred             cccCCCCceecchhHhhhhccccEEEEeeccCchhHHH---------HHHHHHHcCCCChhHhheeeCCCH
Confidence            976  2222222221    245666665432  12244         5677788888887778888887 6

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.24  E-value=3e-12  Score=116.42  Aligned_cols=139  Identities=19%  Similarity=0.192  Sum_probs=102.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|+|.||+.+++.++.+|+ +|+++++++++.+.+++.|++. .       ++.+.+.     ..|+++.+++
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            79999999999999999999999999 7999999999988888888752 1       2333333     4799999998


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCC--hhhchhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCChh
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                      ....+. +.++.++++ ++++.+|...  .......+..++ ++.++...    .+.|.         .++.|+.+++.+
T Consensus       275 ~~~~~~-~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~---------~~~~l~~~g~i~  343 (376)
T 1e3i_A          275 TAQTLK-AAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR-SINGTFFGGWKSVDSVP---------NLVSDYKNKKFD  343 (376)
T ss_dssp             CHHHHH-HHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTTC-EEEECSGGGCCHHHHHH---------HHHHHHHTTSSC
T ss_pred             CHHHHH-HHHHHhhcCCCEEEEECCCCCccccCHHHhhccC-eEEEEecCCCCcHHHHH---------HHHHHHHcCCCC
Confidence            877775 889999999 9999998752  222333444455 66665321    12233         566677777777


Q ss_pred             HHHHHhhhcCC
Q psy16115        247 LYLEILQTCPL  257 (258)
Q Consensus       247 ~~~~~~~~~~~  257 (258)
                      +...|++++||
T Consensus       344 ~~~~i~~~~~l  354 (376)
T 1e3i_A          344 LDLLVTHALPF  354 (376)
T ss_dssp             GGGGEEEEEEG
T ss_pred             cHHhEeeeecH
Confidence            76778888876

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.24  E-value=9.5e-13  Score=118.55  Aligned_cols=174  Identities=18%  Similarity=0.200  Sum_probs=121.4

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...++++|+.++.+.|++. .+...                       .++++.+ .+.  +|++|+|+|+|.||+.+++
T Consensus       133 ~~~~~~iP~~~~~~~aa~~-~~~~t-----------------------a~~~l~~-~~~--~g~~VlV~GaG~vG~~~~q  185 (348)
T 2d8a_A          133 AQNIWKNPKSIPPEYATLQ-EPLGN-----------------------AVDTVLA-GPI--SGKSVLITGAGPLGLLGIA  185 (348)
T ss_dssp             GGGEEECCTTSCHHHHTTH-HHHHH-----------------------HHHHHTT-SCC--TTCCEEEECCSHHHHHHHH
T ss_pred             hHHeEECCCCCCHHHHHhh-hHHHH-----------------------HHHHHHh-cCC--CCCEEEEECCCHHHHHHHH
Confidence            3468899999998888653 22211                       1112211 112  7899999999999999999


Q ss_pred             HHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCccccccHHHHhcCCCCcEEE
Q psy16115        127 SLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGNKNVVTREHMDKMKNGCVVC  193 (258)
Q Consensus       127 ~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~~~~i~~~~l~~~k~g~~iv  193 (258)
                      .++.+|+ +|+++++++++.+.+++.|++.      .++.+.+.      ..|+++.+++....+. +.++.++++++++
T Consensus       186 ~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~-~~~~~l~~~G~iv  264 (348)
T 2d8a_A          186 VAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALE-QGLQAVTPAGRVS  264 (348)
T ss_dssp             HHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHH-HHHHHEEEEEEEE
T ss_pred             HHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHH-HHHHHHhcCCEEE
Confidence            9999999 8999999998887777777642      13333332      4799999998766665 7889999999999


Q ss_pred             ecCCC--Chhhch-hhhcCCCceeeeeccCc--ceeecCCCccCCCceeEEecCCChhHHHHHhhhcC-C
Q psy16115        194 NMGHS--NTEIDV-NSLRTPDLTWEKVRSQV--DHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCP-L  257 (258)
Q Consensus       194 nvg~~--~~~~~~-~~l~~~~i~~~~~~~~~--~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-~  257 (258)
                      .+|..  +..... ..+..+++++.++....  +.|.         .++.|+..++.++...|++++| |
T Consensus       265 ~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~---------~~~~l~~~g~i~~~~~i~~~~~gl  325 (348)
T 2d8a_A          265 LLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWY---------TVSRLLQSGKLNLDPIITHKYKGF  325 (348)
T ss_dssp             ECCCCSSCCCCCHHHHTTTTTCEEEECCCCCSHHHHH---------HHHHHHHHTCCCCTTTEEEEEESS
T ss_pred             EEccCCCCcccCchHHHHhCCcEEEEecCCCcHHHHH---------HHHHHHHcCCCChHHhheeeCCCH
Confidence            99976  233334 45667778887764322  2344         4556666666556666777776 5

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.21  E-value=2.8e-12  Score=117.59  Aligned_cols=140  Identities=17%  Similarity=0.211  Sum_probs=104.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-----CH-HHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-----KL-NEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-----~l-~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+|+|.||+.+++.++.+|+ +|+++++++++++.+++.|++..     ++ .+.+.      ..|+++.+++.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~  264 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            79999999999999999999999999 89999999999888888887532     22 33332      47999999876


Q ss_pred             cc--------------cccHHHHhcCCCCcEEEecCCCC-------------h--hhchhhhcCCCceeeeeccCc-cee
Q psy16115        175 KN--------------VVTREHMDKMKNGCVVCNMGHSN-------------T--EIDVNSLRTPDLTWEKVRSQV-DHV  224 (258)
Q Consensus       175 ~~--------------~i~~~~l~~~k~g~~ivnvg~~~-------------~--~~~~~~l~~~~i~~~~~~~~~-~~~  224 (258)
                      ..              .+. +.++.++++++++.+|...             .  ......+..+++++.+..... +.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~-~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~  343 (398)
T 2dph_A          265 EAHGLGDEANTETPNGALN-SLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYN  343 (398)
T ss_dssp             TCBCSGGGTTSBCTTHHHH-HHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCCGGGTH
T ss_pred             ccccccccccccccHHHHH-HHHHHHhcCCEEEEeccccccccccccccccCCcccccHHHHhhcCCEEEEeccCcHHHH
Confidence            53              353 7889999999999998651             1  122334445667776653322 123


Q ss_pred             ecCCCccCCCceeEEecCCChh--HHHHHhhhcCC
Q psy16115        225 IWPDVNLKNNTVIDLFRKPKSR--LYLEILQTCPL  257 (258)
Q Consensus       225 ~~~~~~l~~~~~~~l~~~~~~~--~~~~~~~~~~~  257 (258)
                      .         .++.|+.+++.+  ....|++++||
T Consensus       344 ~---------~~~~l~~~g~l~~~~~~~i~~~~~l  369 (398)
T 2dph_A          344 R---------HLTEAILWDQMPYLSKVMNIEVITL  369 (398)
T ss_dssp             H---------HHHHHHHTTCCHHHHHHHCEEEECS
T ss_pred             H---------HHHHHHHcCCCCccchhhEEEEEcH
Confidence            3         677888888888  66789999997

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.21  E-value=3.2e-12  Score=116.37  Aligned_cols=176  Identities=19%  Similarity=0.171  Sum_probs=119.6

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...++++|+.++.+.|++.......          .+             .++.+..+ --+|++|+|+|+|.||+.+++
T Consensus       156 ~~~~~~iP~~~~~~~aa~l~~~~~t----------a~-------------~al~~~~~-~~~g~~VlV~GaG~vG~~a~q  211 (378)
T 3uko_A          156 DVSVAKIDPTAPLDKVCLLGCGVPT----------GL-------------GAVWNTAK-VEPGSNVAIFGLGTVGLAVAE  211 (378)
T ss_dssp             GGGEEECCTTSCHHHHGGGGTHHHH----------HH-------------HHHHTTTC-CCTTCCEEEECCSHHHHHHHH
T ss_pred             hhheEECCCCCCHHHhhhhhhhHHH----------HH-------------HHHHhhcC-CCCCCEEEEECCCHHHHHHHH
Confidence            4468899999999888763111110          00             01100000 127999999999999999999


Q ss_pred             HHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccCccccccHHHHhcCCCC-cE
Q psy16115        127 SLKGLGC-VIYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATGNKNVVTREHMDKMKNG-CV  191 (258)
Q Consensus       127 ~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~~~~~i~~~~l~~~k~g-~~  191 (258)
                      .++..|+ +|+++|+++++++.+++.|++. .       ++.+.++     ..|+++.|++....+. +.++.++++ ++
T Consensus       212 ~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~-~~~~~l~~g~G~  290 (378)
T 3uko_A          212 GAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMR-AALECCHKGWGT  290 (378)
T ss_dssp             HHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHH-HHHHTBCTTTCE
T ss_pred             HHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHH-HHHHHhhccCCE
Confidence            9999999 7999999999998898888752 1       2333333     3899999999877775 889999996 99


Q ss_pred             EEecCCC--Chhh--chhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115        192 VCNMGHS--NTEI--DVNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       192 ivnvg~~--~~~~--~~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      ++.+|..  +...  ....+.. ++++.++...    .+.|.         .++.|+..++.++...|+|++||
T Consensus       291 iv~~G~~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~---------~~~~l~~~g~l~~~~~i~~~~~l  354 (378)
T 3uko_A          291 SVIVGVAASGQEISTRPFQLVT-GRVWKGTAFGGFKSRTQVP---------WLVEKYMNKEIKVDEYITHNLTL  354 (378)
T ss_dssp             EEECSCCCTTCCEEECTHHHHT-TCEEEECSGGGCCHHHHHH---------HHHHHHHTTSSCCGGGEEEEEEG
T ss_pred             EEEEcccCCCCccccCHHHHhc-CcEEEEEEecCCCchHHHH---------HHHHHHHcCCCChhHheeeEeeH
Confidence            9999975  2222  2222333 5566654321    12233         45667777777777778888876

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.20  E-value=5.4e-12  Score=114.61  Aligned_cols=139  Identities=20%  Similarity=0.182  Sum_probs=102.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|+|.||+.+++.++.+|+ +|+++++++++.+.+++.|++. .       ++.+.+.     ..|+++.+++
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            79999999999999999999999999 7999999999988888888752 1       2333333     4799999998


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCCh----hhchhhhcCCCceeeeeccC---cceeecCCCccCCCceeEEecCCCh
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSNT----EIDVNSLRTPDLTWEKVRSQ---VDHVIWPDVNLKNNTVIDLFRKPKS  245 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~~----~~~~~~l~~~~i~~~~~~~~---~~~~~~~~~~l~~~~~~~l~~~~~~  245 (258)
                      ....+. +.++.++++ ++++.+|....    +.....+..++ ++.++...   .+.|.         .++.|+.+++.
T Consensus       271 ~~~~~~-~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~---------~~~~l~~~g~i  339 (373)
T 1p0f_A          271 RIETMM-NALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVFGGFKGEEVS---------RLVDDYMKKKI  339 (373)
T ss_dssp             CHHHHH-HHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSGGGCCGGGHH---------HHHHHHHTTSS
T ss_pred             CHHHHH-HHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeeccCCcCHHHHH---------HHHHHHHcCCC
Confidence            777775 789999999 99999987521    22223343444 66654321   12233         56777777777


Q ss_pred             hHHHHHhhhcCC
Q psy16115        246 RLYLEILQTCPL  257 (258)
Q Consensus       246 ~~~~~~~~~~~~  257 (258)
                      ++...|++++||
T Consensus       340 ~~~~~i~~~~~l  351 (373)
T 1p0f_A          340 NVNFLVSTKLTL  351 (373)
T ss_dssp             CGGGGEEEEECG
T ss_pred             CchheEEEEeeH
Confidence            777778888886

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.20  E-value=7.2e-12  Score=113.85  Aligned_cols=139  Identities=22%  Similarity=0.292  Sum_probs=100.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|.|.||+.+++.++.+|+ +|+++++++.+.+.+++.|++. .       ++.+.+.     ..|+++.+++
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            79999999999999999999999999 7999999999988888888742 1       2333333     4799999998


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCCh---hhchhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCCh
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSNT---EIDVNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPKS  245 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~~---~~~~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~~  245 (258)
                      ....+. ..++.++++ ++++.+|....   +.....+..++ ++.++...    .+.|.         .++.|+..++.
T Consensus       272 ~~~~~~-~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~---------~~~~l~~~g~l  340 (374)
T 1cdo_A          272 NVGVMR-NALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMFGGFKGKDGVP---------KMVKAYLDKKV  340 (374)
T ss_dssp             CHHHHH-HHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSGGGCCHHHHHH---------HHHHHHHTTSS
T ss_pred             CHHHHH-HHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEecCCCCcHHHHH---------HHHHHHHcCCC
Confidence            776675 789999999 99999987621   22223344455 66655321    12233         45666666666


Q ss_pred             hHHHHHhhhcCC
Q psy16115        246 RLYLEILQTCPL  257 (258)
Q Consensus       246 ~~~~~~~~~~~~  257 (258)
                      +....|++++||
T Consensus       341 ~~~~~i~~~~~l  352 (374)
T 1cdo_A          341 KLDEFITHRMPL  352 (374)
T ss_dssp             CCGGGEEEEEEG
T ss_pred             ChHHheeeEecH
Confidence            666667777775

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.19  E-value=6.4e-11  Score=107.18  Aligned_cols=107  Identities=19%  Similarity=0.306  Sum_probs=88.7

Q ss_pred             Cc-ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHH-hCCeeeeccCccccccHH
Q psy16115        104 DV-MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIR-TVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       104 ~~-~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~-~aDvvi~~~~~~~~i~~~  181 (258)
                      +. ++.||||+|+|+|+||+.+|+.++.+|++|+++|+++.+.+.+.+.+++..+.++++. .+|+++.|. +.+.|+.+
T Consensus       169 G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~A-~~~~I~~~  247 (355)
T 1c1d_A          169 GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-MGGVITTE  247 (355)
T ss_dssp             TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-CSCCBCHH
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHhH-HHhhcCHH
Confidence            55 7899999999999999999999999999999999998764445556777777788887 899998875 78899999


Q ss_pred             HHhcCCCCcEEEecCCC---ChhhchhhhcCCCce
Q psy16115        182 HMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLT  213 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~  213 (258)
                      .++.|| ..+|+|.+++   ++++ .+.|..+.+-
T Consensus       248 ~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          248 VARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             HHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             HHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            999998 6799999988   3344 5677766663

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.19  E-value=7.5e-12  Score=113.72  Aligned_cols=139  Identities=21%  Similarity=0.223  Sum_probs=100.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|+|.||+.+++.++.+|+ +|+++++++++.+.+++.|++. .       ++.+.+.     ..|+++.+++
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            78999999999999999999999999 7999999999988888888752 1       2333333     4799999998


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCCh----hhchhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSNT----EIDVNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~~----~~~~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ....+. +.++.++++ ++++.+|....    +.....+..++ ++.++...    .+.|.         .++.|+..++
T Consensus       271 ~~~~~~-~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~---------~~~~l~~~g~  339 (374)
T 2jhf_A          271 RLDTMV-TALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIFGGFKSKDSVP---------KLVADFMAKK  339 (374)
T ss_dssp             CHHHHH-HHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHH---------HHHHHHHTTS
T ss_pred             CHHHHH-HHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEeccCCCChHHHHH---------HHHHHHHcCC
Confidence            876775 789999999 99999987521    22223344455 66655321    12233         4566666666


Q ss_pred             hhHHHHHhhhcCC
Q psy16115        245 SRLYLEILQTCPL  257 (258)
Q Consensus       245 ~~~~~~~~~~~~~  257 (258)
                      .+....|+|++||
T Consensus       340 i~~~~~i~~~~~l  352 (374)
T 2jhf_A          340 FALDPLITHVLPF  352 (374)
T ss_dssp             SCCGGGEEEEEEG
T ss_pred             CCchhheEEEEeH
Confidence            6666667777775

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.17  E-value=7.2e-12  Score=113.74  Aligned_cols=139  Identities=20%  Similarity=0.230  Sum_probs=100.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|.|.||+.+++.++.+|+ +|+++++++++.+.+++.|++. .       ++.+.++     ..|+++.+++
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            79999999999999999999999999 7999999999988888888642 1       2333333     4799999998


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCCCh----hhchhhhcCCCceeeeeccC----cceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHSNT----EIDVNSLRTPDLTWEKVRSQ----VDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~~~----~~~~~~l~~~~i~~~~~~~~----~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ....+. +.++.++++ ++++.+|....    ......+..++ ++.++...    .+.|.         .++.|+..++
T Consensus       270 ~~~~~~-~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~---------~~~~l~~~g~  338 (373)
T 2fzw_A          270 NVKVMR-AALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFGGWKSVESVP---------KLVSEYMSKK  338 (373)
T ss_dssp             CHHHHH-HHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHHHH---------HHHHHHHTTS
T ss_pred             cHHHHH-HHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccCCCCcHHHHH---------HHHHHHHcCC
Confidence            776675 789999999 99999997521    22223344455 66655321    12233         4566666676


Q ss_pred             hhHHHHHhhhcCC
Q psy16115        245 SRLYLEILQTCPL  257 (258)
Q Consensus       245 ~~~~~~~~~~~~~  257 (258)
                      .++...|++++||
T Consensus       339 l~~~~~i~~~~~l  351 (373)
T 2fzw_A          339 IKVDEFVTHNLSF  351 (373)
T ss_dssp             SCSGGGEEEEEEG
T ss_pred             CCchheEeEEeeH
Confidence            6666677787776

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.17  E-value=2e-12  Score=116.15  Aligned_cols=174  Identities=18%  Similarity=0.250  Sum_probs=119.9

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...++++|+.++.+.|++. .++...                       ++++....+.  +|++|+|+|+|.||+.+++
T Consensus       129 ~~~~~~iP~~~~~~~aa~~-~~~~ta-----------------------~~~l~~~~~~--~g~~VlV~GaG~vG~~~~q  182 (343)
T 2dq4_A          129 AENAWVNPKDLPFEVAAIL-EPFGNA-----------------------VHTVYAGSGV--SGKSVLITGAGPIGLMAAM  182 (343)
T ss_dssp             GGGEEEECTTSCHHHHTTH-HHHHHH-----------------------HHHHHSTTCC--TTSCEEEECCSHHHHHHHH
T ss_pred             hHHeEECCCCCCHHHHHhh-hHHHHH-----------------------HHHHHHhCCC--CCCEEEEECCCHHHHHHHH
Confidence            3468899999998888653 222111                       1122101122  7899999999999999999


Q ss_pred             HHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCccccccHHHHhcCCCCcEEEe
Q psy16115        127 SLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNKNVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       127 ~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivn  194 (258)
                      .++.+|+ +|+++++++++.+.+++. ++.      .++.+.++     +.|+++.+++....+. +.++.++++++++.
T Consensus       183 ~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~-~~~~~l~~~G~iv~  260 (343)
T 2dq4_A          183 VVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAIH-QGLMALIPGGEARI  260 (343)
T ss_dssp             HHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHHHHH-HHHHHEEEEEEEEE
T ss_pred             HHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHHHHH-HHHHHHhcCCEEEE
Confidence            9999999 899999998877666555 431      13334333     4799999998766664 78899999999999


Q ss_pred             cCCCC--hhhch-hhhcCCCceeeeeccC--cceeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115        195 MGHSN--TEIDV-NSLRTPDLTWEKVRSQ--VDHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       195 vg~~~--~~~~~-~~l~~~~i~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      +|...  ..... ..+..+++++.++...  .+.|.         .++.|+.+++.++...|++++||
T Consensus       261 ~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~---------~~~~l~~~g~~~~~~~i~~~~~l  319 (343)
T 2dq4_A          261 LGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWM---------QGTALVYSGRVDLSPLLTHRLPL  319 (343)
T ss_dssp             CCCCSSCEEECHHHHTGGGTCEEEECCSCCTTHHHH---------HHHHHHHHTSSCCGGGEEEEEEG
T ss_pred             EecCCCCceeCcHHHHHhCceEEEEeecCCCHHHHH---------HHHHHHHcCCCChHHheeEEecH
Confidence            98762  23333 4455667788776433  23344         46666766666666777787776

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.17  E-value=3.8e-12  Score=114.15  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=106.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|.|+|.+|...++.++..|++ ++++++++++++.++++|++.      .+..+..+      ..|+++.+++.
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~  239 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGV  239 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSCS
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccccc
Confidence            799999999999999999999999985 678999999998899999752      13333332      37999999998


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC--C---hhhchhhhcCCCceeeeeccCc------ceeecCCCccCCCceeEEecCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS--N---TEIDVNSLRTPDLTWEKVRSQV------DHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~--~---~~~~~~~l~~~~i~~~~~~~~~------~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      ...++ ..++.+++++.++.+|..  +   ....+..+..+++++.++....      +.|.         .++.|++.+
T Consensus       240 ~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~~~~---------~~~~l~~~g  309 (346)
T 4a2c_A          240 PQTVE-LAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWE---------TASRLLTER  309 (346)
T ss_dssp             HHHHH-HHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCHHHH---------HHHHHHHTT
T ss_pred             cchhh-hhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHHHHH---------HHHHHHHcC
Confidence            88886 889999999999999876  2   1223445556778887763221      1233         456677777


Q ss_pred             ChhHHHHHhhhcCC
Q psy16115        244 KSRLYLEILQTCPL  257 (258)
Q Consensus       244 ~~~~~~~~~~~~~~  257 (258)
                      +.++...|+|++||
T Consensus       310 ~l~~~~lI~~~~~l  323 (346)
T 4a2c_A          310 KLSLEPLIAHRGSF  323 (346)
T ss_dssp             CSCCGGGEEEEECH
T ss_pred             CCCCCccEeEEEeH
Confidence            77777788888886

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.15  E-value=2.2e-10  Score=104.32  Aligned_cols=93  Identities=20%  Similarity=0.292  Sum_probs=75.6

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc-------ccCHHHHHHhCCeeeeccCcc--
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-------VVKLNEVIRTVDIVVTATGNK--  175 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~-------~~~l~e~~~~aDvvi~~~~~~--  175 (258)
                      .+.+++|+|+|+|.||+.+++.++.+|++|+++|+++.+++.+.+ .|..       ..++++.++++|+|+.|++..  
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~  242 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGA  242 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcc
Confidence            468999999999999999999999999999999999988765544 4543       234667788999999996533  


Q ss_pred             ---ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 ---NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ---~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                         .++..+.++.||+++++||+|..
T Consensus       243 ~~~~li~~~~l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          243 KAPKLVTRDMLSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             ---CCSCHHHHTTSCTTCEEEECC--
T ss_pred             ccchhHHHHHHHhhcCCCEEEEEecC
Confidence               45677899999999999999964

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.15  E-value=4.5e-12  Score=114.09  Aligned_cols=112  Identities=10%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--CHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KLNEVIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--~l~e~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      +|++|+|+|+|.||+.+++.++.+|++|+++++++++.+.+++.|++..  +.+++.++.|+++.+++....+. +.++.
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~-~~~~~  254 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLK-DYLKL  254 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHH-HHHTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHH-HHHHH
Confidence            7999999999999999999999999999999999999888888887632  22222226899999998887775 88999


Q ss_pred             CCCCcEEEecCCCC-hh---hchhhhc-CCCceeeeeccC
Q psy16115        186 MKNGCVVCNMGHSN-TE---IDVNSLR-TPDLTWEKVRSQ  220 (258)
Q Consensus       186 ~k~g~~ivnvg~~~-~~---~~~~~l~-~~~i~~~~~~~~  220 (258)
                      ++++++++.+|... ..   .....+. .+++++.++...
T Consensus       255 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  294 (348)
T 3two_A          255 LTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIG  294 (348)
T ss_dssp             EEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSC
T ss_pred             HhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecC
Confidence            99999999999764 32   2333444 778888876543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.15  E-value=4.7e-12  Score=114.56  Aligned_cols=111  Identities=16%  Similarity=0.179  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c------CHHHHH-HhCCeeeeccCc--ccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V------KLNEVI-RTVDIVVTATGN--KNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~------~l~e~~-~~aDvvi~~~~~--~~~  177 (258)
                      +|++|+|+|+|.||+.+++.++.+|++|+++++++.+.+.+++.|++. .      ++.+.+ ...|+++.+++.  ...
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~  258 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID  258 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH
Confidence            799999999999999999999999999999999998888887888652 2      222222 257999999987  667


Q ss_pred             ccHHHHhcCCCCcEEEecCCCCh--hhchhhhcCCCceeeeecc
Q psy16115        178 VTREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i~~~~~~~  219 (258)
                      +. +.++.++++++++.+|....  ......+..+++++.++..
T Consensus       259 ~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~  301 (360)
T 1piw_A          259 FN-IMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSAL  301 (360)
T ss_dssp             TT-TGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCC
T ss_pred             HH-HHHHHhcCCCEEEEecCCCCccccCHHHHHhCCeEEEEEec
Confidence            75 78899999999999997632  2233345566777776543

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.14  E-value=2.7e-12  Score=116.30  Aligned_cols=148  Identities=16%  Similarity=0.093  Sum_probs=104.0

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ...++++|+.++.+.|+.........                       +.++.+..+ --+|++|+|+|.|.||+.+++
T Consensus       152 ~~~~~~iP~~~~~~~aa~l~~~~~ta-----------------------~~al~~~~~-~~~g~~VlV~G~G~vG~~a~q  207 (363)
T 3uog_A          152 EGWFVAAPKSLDAAEASTLPCAGLTA-----------------------WFALVEKGH-LRAGDRVVVQGTGGVALFGLQ  207 (363)
T ss_dssp             GGGEEECCTTSCHHHHHTTTTHHHHH-----------------------HHHHTTTTC-CCTTCEEEEESSBHHHHHHHH
T ss_pred             hHHeEECCCCCCHHHHhhcccHHHHH-----------------------HHHHHHhcC-CCCCCEEEEECCCHHHHHHHH
Confidence            44688999999988886532111111                       111110000 127999999999999999999


Q ss_pred             HHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCccccccHHHHhcCCCCcEEEe
Q psy16115        127 SLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGNKNVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       127 ~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivn  194 (258)
                      .++..|++|+++++++.+.+.+++.|++.      .++.+.+.      +.|+++.|++ ...+. +.++.++++++++.
T Consensus       208 la~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~~~~~-~~~~~l~~~G~iv~  285 (363)
T 3uog_A          208 IAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-GAGLG-QSLKAVAPDGRISV  285 (363)
T ss_dssp             HHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-SSCHH-HHHHHEEEEEEEEE
T ss_pred             HHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-hHHHH-HHHHHhhcCCEEEE
Confidence            99999999999999999888888888752      12333322      4799999998 44554 78999999999999


Q ss_pred             cCCCC---hhhchhhhcCCCceeeeeccC
Q psy16115        195 MGHSN---TEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       195 vg~~~---~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      +|...   .......+..+++++.++...
T Consensus       286 ~G~~~~~~~~~~~~~~~~~~~~i~g~~~~  314 (363)
T 3uog_A          286 IGVLEGFEVSGPVGPLLLKSPVVQGISVG  314 (363)
T ss_dssp             ECCCSSCEECCBTTHHHHTCCEEEECCCC
T ss_pred             EecCCCcccCcCHHHHHhCCcEEEEEecC
Confidence            99762   334445555677777776543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.13  E-value=3.3e-12  Score=115.97  Aligned_cols=139  Identities=18%  Similarity=0.173  Sum_probs=100.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|++|+|+|.|.||+.+++.++.+|+ +|+++++++++.+.+++.|++.      .++.+.+.     ..|+++.+++..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            78999999999999999999999999 6999999999988888878652      13333333     379999999877


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC----hhhchhhhcCCCceeeeeccCc----ceeecCCCccCCCceeEEecCCChhH
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN----TEIDVNSLRTPDLTWEKVRSQV----DHVIWPDVNLKNNTVIDLFRKPKSRL  247 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~----~~~~~~~l~~~~i~~~~~~~~~----~~~~~~~~~l~~~~~~~l~~~~~~~~  247 (258)
                      ..+. +.++.++++++++.+|...    .......+..+++++.++....    +.|.         .++.|+..++.+.
T Consensus       270 ~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~---------~~~~l~~~g~l~~  339 (371)
T 1f8f_A          270 EILK-QGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIP---------ELVRLYQQGKFPF  339 (371)
T ss_dssp             HHHH-HHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCHHHHHH---------HHHHHHHTTSCCG
T ss_pred             HHHH-HHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCCCchHHHHH---------HHHHHHHcCCCCc
Confidence            6675 7899999999999998752    2233334555667777653211    1233         4556666666665


Q ss_pred             HHHHhhhcCC
Q psy16115        248 YLEILQTCPL  257 (258)
Q Consensus       248 ~~~~~~~~~~  257 (258)
                      ...|++ +||
T Consensus       340 ~~~i~~-~~l  348 (371)
T 1f8f_A          340 DQLVKF-YAF  348 (371)
T ss_dssp             GGGEEE-EEG
T ss_pred             ccceeE-ecH
Confidence            556666 665

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.13  E-value=6.3e-12  Score=113.58  Aligned_cols=137  Identities=15%  Similarity=0.095  Sum_probs=103.1

Q ss_pred             CCEEEEEcCchHHHHH-HHHH-HhCCCE-EEEEeCChh---hHHHHHhCCCccc-----CHHHHHH----hCCeeeeccC
Q psy16115        109 GKQVVLCGYGEVGKGC-CQSL-KGLGCV-IYITEIDPI---CALQACMDGFSVV-----KLNEVIR----TVDIVVTATG  173 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~-a~~l-~~~G~~-Vi~~d~~~~---~~~~a~~~g~~~~-----~l~e~~~----~aDvvi~~~~  173 (258)
                      +++|+|+|+|.||+.+ ++.+ +.+|++ |++++++++   +.+.+++.|++..     ++.+ +.    +.|+++.+++
T Consensus       173 ~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg~Dvvid~~g  251 (357)
T 2b5w_A          173 PSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQMDFIYEATG  251 (357)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCCEEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCCCCEEEECCC
Confidence            3999999999999999 9999 999997 999999988   8888888887532     2333 32    4799999998


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCCC-h--hhchhhh----cCCCceeeeeccCc-ceeecCCCccCCCceeEEecCC--
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHSN-T--EIDVNSL----RTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKP--  243 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~~-~--~~~~~~l----~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~--  243 (258)
                      ....+. +.++.++++++++.+|... .  ......+    ..+++++.++.... +.|.         .++.|+..+  
T Consensus       252 ~~~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~l~~~g~~  321 (357)
T 2b5w_A          252 FPKHAI-QSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFE---------AATVTFTKLPK  321 (357)
T ss_dssp             CHHHHH-HHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCCHHHHH---------HHHHHHHHSCH
T ss_pred             ChHHHH-HHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCCHHHHH---------HHHHHHHhCch
Confidence            876665 7899999999999998753 2  2333344    45677777764432 3344         567777777  


Q ss_pred             ChhHHHHHhhhcCC
Q psy16115        244 KSRLYLEILQTCPL  257 (258)
Q Consensus       244 ~~~~~~~~~~~~~~  257 (258)
                      +. +...|++++||
T Consensus       322 ~~-~~~~i~~~~~l  334 (357)
T 2b5w_A          322 WF-LEDLVTGVHPL  334 (357)
T ss_dssp             HH-HHHHEEEEEEG
T ss_pred             hh-hhhhcceeecH
Confidence            44 67788888886

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.13  E-value=9e-12  Score=111.69  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=88.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH----hCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR----TVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~----~aDvvi~~~~~~~~  177 (258)
                      +|++|+|+|+|.||+.+++.++..|++|+++++++++.+.+++.|++.      .++.+.+.    +.|+++.+++....
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            799999999999999999999999999999999999988888888752      13333333    57999999887777


Q ss_pred             ccHHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeeeeccC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      +. +.++.++++++++.+|...  .......+..+++++.++...
T Consensus       246 ~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~  289 (340)
T 3s2e_A          246 FS-QAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVG  289 (340)
T ss_dssp             HH-HHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECCSC
T ss_pred             HH-HHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEecC
Confidence            75 8899999999999999762  233334445567777776443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.12  E-value=1.7e-10  Score=102.29  Aligned_cols=135  Identities=13%  Similarity=0.144  Sum_probs=96.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccccccH------HH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTR------EH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~------~~  182 (258)
                      ++||+||+|.||..+|+.|...|.+|++||+++.+.+...+.|+.. .++.++++.+|+|++|..+...+..      ..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            6899999999999999999999999999999999988777788764 5899999999999999655544321      13


Q ss_pred             HhcCCCCcEEEecCCCCh---hhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        183 MDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      ++.+++|.++||.+..+.   ....+.+..+.+...+. |....    ...-.+++...++.+++..|.+
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDa-PVsGg----~~~A~~G~L~imvGG~~~~~~~  148 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDA-PVSGG----TAGAAAGTLTFMVGGDAEALEK  148 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEEC-CEESC----HHHHHHTCEEEEEESCHHHHHH
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEec-CCCCC----HHHHHhCCEEEEEeCCHHHHHH
Confidence            456899999999998832   22345666665655433 11100    1112345667778877777654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.11  E-value=1.1e-11  Score=111.26  Aligned_cols=111  Identities=16%  Similarity=0.151  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHH----HhCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVI----RTVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~----~~aDvvi~~~~~~~~  177 (258)
                      +|++|+|+|+|.||+.+++.++..|++|+++++++.+.+.+++.|++..      ++.+.+    ...|+++.+++....
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            7899999999999999999999999999999999998888888886421      232322    358999999987666


Q ss_pred             ccHHHHhcCCCCcEEEecCCCCh--hhchhhhcCCCceeeeecc
Q psy16115        178 VTREHMDKMKNGCVVCNMGHSNT--EIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i~~~~~~~  219 (258)
                      +. +.++.++++++++.+|....  ......+..+++++.++..
T Consensus       244 ~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~  286 (339)
T 1rjw_A          244 FQ-SAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIV  286 (339)
T ss_dssp             HH-HHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCS
T ss_pred             HH-HHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEEEecc
Confidence            64 78899999999999998732  2223334446677776543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.10  E-value=1.3e-11  Score=112.56  Aligned_cols=176  Identities=19%  Similarity=0.210  Sum_probs=118.4

Q ss_pred             CCceEECChhhhHH-HHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHH
Q psy16115         47 KSDVYLLPKKMDEY-VASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCC  125 (258)
Q Consensus        47 ~~~V~~lP~~~~~~-vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a  125 (258)
                      ...++++|+.++.+ .|.+. .+....+.                       ++.+. +.--+|++|+|+|.|.+|+.++
T Consensus       158 ~~~~~~iP~~l~~~~~Aa~~-~~~~ta~~-----------------------al~~~-~~~~~g~~VlV~GaG~vG~~ai  212 (380)
T 1vj0_A          158 ETDVLKVSEKDDLDVLAMAM-CSGATAYH-----------------------AFDEY-PESFAGKTVVIQGAGPLGLFGV  212 (380)
T ss_dssp             TCCEEEECTTSCHHHHHHHT-THHHHHHH-----------------------HHHTC-SSCCBTCEEEEECCSHHHHHHH
T ss_pred             cceEEECCCCCChHHhHhhh-cHHHHHHH-----------------------HHHhc-CCCCCCCEEEEECcCHHHHHHH
Confidence            45789999999988 77653 22221111                       11110 0012789999999999999999


Q ss_pred             HHHHhCC-CEEEEEeCChhhHHHHHhCCCcc-cC--------HHHHHH------hCCeeeeccCccccccHHHHhcCCCC
Q psy16115        126 QSLKGLG-CVIYITEIDPICALQACMDGFSV-VK--------LNEVIR------TVDIVVTATGNKNVVTREHMDKMKNG  189 (258)
Q Consensus       126 ~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~-~~--------l~e~~~------~aDvvi~~~~~~~~i~~~~l~~~k~g  189 (258)
                      +.++.+| ++|+++++++++.+.+++.|++. .+        +.+.+.      ..|+++.+++....+. +.++.++++
T Consensus       213 qlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~-~~~~~l~~~  291 (380)
T 1vj0_A          213 VIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALL-EGSELLRRG  291 (380)
T ss_dssp             HHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHH-HHHHHEEEE
T ss_pred             HHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHH-HHHHHHhcC
Confidence            9999999 59999999999988888888752 11        112221      4799999998777775 789999999


Q ss_pred             cEEEecCCCC-h---hhchhh-hcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCChhHHHHHhhhcCC
Q psy16115        190 CVVCNMGHSN-T---EIDVNS-LRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPKSRLYLEILQTCPL  257 (258)
Q Consensus       190 ~~ivnvg~~~-~---~~~~~~-l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~  257 (258)
                      ++++.+|... .   ...... +..+++++.++.... +.|.         .++.|+...+..+...|++++||
T Consensus       292 G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~l~~~~~g~l~~~i~~~~~l  356 (380)
T 1vj0_A          292 GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFV---------KTVSITSRNYQLLSKLITHRLPL  356 (380)
T ss_dssp             EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCCHHHHH---------HHHHHHHTCHHHHGGGCCEEEEG
T ss_pred             CEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeecCCHHHHH---------HHHHHHHhhcCCeeeEEEEEEeH
Confidence            9999998753 2   223334 667788888765432 2344         45555554112334566677765

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.09  E-value=3.1e-11  Score=110.49  Aligned_cols=140  Identities=21%  Similarity=0.260  Sum_probs=97.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcccC------HHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVK------LNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~~------l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+|+|.||+..++.++.+|+ +|+++|+++++++.+++.|++..+      +.+.++      +.|+++.+++.
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~  264 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            79999999999999999999999999 799999999998888888875321      233332      37999999876


Q ss_pred             cc---------------cccHHHHhcCCCCcEEEecCCC-C-h-------------hhchhhhcCCCceeeeeccCc-ce
Q psy16115        175 KN---------------VVTREHMDKMKNGCVVCNMGHS-N-T-------------EIDVNSLRTPDLTWEKVRSQV-DH  223 (258)
Q Consensus       175 ~~---------------~i~~~~l~~~k~g~~ivnvg~~-~-~-------------~~~~~~l~~~~i~~~~~~~~~-~~  223 (258)
                      ..               .+. +.++.++++++++.+|.. . .             ......+..+++++.+..... +.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  343 (398)
T 1kol_A          265 EARGHGHEGAKHEAPATVLN-SLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKY  343 (398)
T ss_dssp             TCBCSSTTGGGSBCTTHHHH-HHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCCHHHH
T ss_pred             cccccccccccccchHHHHH-HHHHHHhcCCEEEEeccccCCcccccccccccccccccHHHHhhcccEEEecccChHHH
Confidence            53               453 788999999999999864 1 1             111222333445554432111 11


Q ss_pred             eecCCCccCCCceeEEecCCChhH-HHHHhhhcCC
Q psy16115        224 VIWPDVNLKNNTVIDLFRKPKSRL-YLEILQTCPL  257 (258)
Q Consensus       224 ~~~~~~~l~~~~~~~l~~~~~~~~-~~~~~~~~~~  257 (258)
                      +.         .++.|+..++.++ ...|++++||
T Consensus       344 ~~---------~~~~l~~~g~l~~~~~~i~~~~~l  369 (398)
T 1kol_A          344 NR---------ALMQAIMWDRINIAEVVGVQVISL  369 (398)
T ss_dssp             HH---------HHHHHHHTTSCCHHHHHTEEEECG
T ss_pred             HH---------HHHHHHHcCCCCCccceeEEEEcH
Confidence            22         4567777777773 4567888886

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.08  E-value=3.9e-10  Score=88.78  Aligned_cols=89  Identities=17%  Similarity=0.310  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-HHhCCCc---ccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFS---VVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~~~g~~---~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      .+++|+|+|+|.||+.+++.|+..|++|+++|+++.+.+. +.+.+..   ..++++.++++|+|+.|++..+.+...  
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~~~~~--   97 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTPIVEE--   97 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSCSBCG--
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCcEeeH--
Confidence            4899999999999999999999999999999999988654 4444543   346888899999999998766543212  


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                      +.+++|.+++|+|.+
T Consensus        98 ~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           98 RSLMPGKLFIDLGNP  112 (144)
T ss_dssp             GGCCTTCEEEECCSS
T ss_pred             HHcCCCCEEEEccCC
Confidence            668999999999986

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.05  E-value=1.2e-10  Score=106.95  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=105.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+|+|.||+.+++.++.+|+ +|+++++++.+++.+++.|++.      .++.+.+.      +.|+++.|++.
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            79999999999999999999999999 8999999999988888888752      12333332      48999999988


Q ss_pred             cc-cccHHHHhcC----CCCcEEEecCCC--ChhhchhhhcCCCceeeeeccC--cceeecCCCccCCCceeEEecCCCh
Q psy16115        175 KN-VVTREHMDKM----KNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQ--VDHVIWPDVNLKNNTVIDLFRKPKS  245 (258)
Q Consensus       175 ~~-~i~~~~l~~~----k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~--~~~~~~~~~~l~~~~~~~l~~~~~~  245 (258)
                      .. .+. ..++.+    +++++++.+|..  +.......+..+++++.++...  .+.|.         .++.|+..+ .
T Consensus       293 ~~~~~~-~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~---------~~~~ll~~g-l  361 (404)
T 3ip1_A          293 PQLVWP-QIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGHGTFP---------RVISLMASG-M  361 (404)
T ss_dssp             HHHHHH-HHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEECCCCCSTTHHH---------HHHHHHHTT-C
T ss_pred             cHHHHH-HHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEecCCCchHHHH---------HHHHHHHcC-C
Confidence            73 443 556666    999999999976  3444556666778888877542  23455         566666666 6


Q ss_pred             hHHHHHhhhcCC
Q psy16115        246 RLYLEILQTCPL  257 (258)
Q Consensus       246 ~~~~~~~~~~~~  257 (258)
                      .+...|++++||
T Consensus       362 ~~~~~i~~~~~l  373 (404)
T 3ip1_A          362 DMTKIISKTVSM  373 (404)
T ss_dssp             CGGGGCCEEECG
T ss_pred             ChhheEEEEeeH
Confidence            666778888876

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.03  E-value=6.7e-11  Score=106.19  Aligned_cols=111  Identities=13%  Similarity=0.104  Sum_probs=87.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCccc-----CHHHHH----H--hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVV-----KLNEVI----R--TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~----~--~aDvvi~~~~~~  175 (258)
                      .|++|+|+|+|.+|+..++.++.. |.+|+++|+++++.+.+++.|++..     ++.+.+    .  +.|+++.+++..
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~  250 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ  250 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence            799999999999999999999998 6799999999999988889987532     222222    2  579999999988


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeeccC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      ..++ +.++.++++++++.+|...   ..... .+..+++++.++...
T Consensus       251 ~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~  296 (345)
T 3jv7_A          251 STID-TAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWG  296 (345)
T ss_dssp             HHHH-HHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSC
T ss_pred             HHHH-HHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecC
Confidence            7775 8899999999999999762   22233 455667777776543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.00  E-value=3.3e-10  Score=102.98  Aligned_cols=111  Identities=14%  Similarity=0.134  Sum_probs=85.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CH---HHHHHhCCeeeeccCccccccH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KL---NEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l---~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      +|++|+|+|+|.||+.+++.++.+|++|+++++++++.+.+++.|++..    +.   +++....|+++.+++....+. 
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~-  272 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLD-  272 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHH-
Confidence            7999999999999999999999999999999999999888888887531    11   111235799999998877775 


Q ss_pred             HHHhcCCCCcEEEecCCCC--h-hhchhhhcCCCceeeeecc
Q psy16115        181 EHMDKMKNGCVVCNMGHSN--T-EIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~~--~-~~~~~~l~~~~i~~~~~~~  219 (258)
                      +.++.++++++++.+|...  . ......+..+++++.++..
T Consensus       273 ~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~  314 (369)
T 1uuf_A          273 DFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMI  314 (369)
T ss_dssp             HHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCS
T ss_pred             HHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeec
Confidence            7899999999999999762  2 3334455567788777643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.00  E-value=1.6e-09  Score=98.30  Aligned_cols=92  Identities=20%  Similarity=0.237  Sum_probs=75.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------cCHHHHHHhCCeeeeccCccc--
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------VKLNEVIRTVDIVVTATGNKN--  176 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------~~l~e~~~~aDvvi~~~~~~~--  176 (258)
                      +++++|+|+|+|.+|+.+++.++.+|++|+++|+++.+++.+.+.+...        .++.+.++++|+||.|++.+.  
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~  244 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  244 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCC
Confidence            5779999999999999999999999999999999998876665443221        235566778999999975433  


Q ss_pred             ---cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 ---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                         ++..+.++.|+++++++|++..
T Consensus       245 ~~~li~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          245 APILVPASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             CCeecCHHHHhhCCCCCEEEEEecC
Confidence               3566889999999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.99  E-value=2e-09  Score=94.19  Aligned_cols=89  Identities=16%  Similarity=0.232  Sum_probs=74.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcccccc------HHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~------~~~  182 (258)
                      ++|+|||+|.||..+++.|...|.+|+++|+++.+.+...+.|... .+++++++++|+|++|..+...+.      .+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            5899999999999999999999999999999999887777777764 578999999999999976443222      134


Q ss_pred             HhcCCCCcEEEecCCC
Q psy16115        183 MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~  198 (258)
                      .+.++++.+++|++..
T Consensus        82 ~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             HHHCCTTCEEEECSCC
T ss_pred             hhcCCCCCEEEeCCCC
Confidence            4678999999999876

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=98.99  E-value=4e-11  Score=108.64  Aligned_cols=141  Identities=13%  Similarity=0.156  Sum_probs=103.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh---hhHHHHHhCCCccc---CHHHHH----HhCCeeeeccCccc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP---ICALQACMDGFSVV---KLNEVI----RTVDIVVTATGNKN  176 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~---~~~~~a~~~g~~~~---~l~e~~----~~aDvvi~~~~~~~  176 (258)
                      +.|++|+|+|+|.||+.+++.++..|++|+++++++   ++.+.+.+.|++..   ++.+.+    ...|+++.+++...
T Consensus       179 ~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  258 (366)
T 2cdc_A          179 LNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADV  258 (366)
T ss_dssp             STTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChH
Confidence            459999999999999999999999999999999988   77776777776533   111222    24899999998766


Q ss_pred             cc-cHHHHhcCCCCcEEEecCCCC---hhhchhh---hcCCCceeeeeccCc-ceeecCCCccCCCceeEEecCCChh--
Q psy16115        177 VV-TREHMDKMKNGCVVCNMGHSN---TEIDVNS---LRTPDLTWEKVRSQV-DHVIWPDVNLKNNTVIDLFRKPKSR--  246 (258)
Q Consensus       177 ~i-~~~~l~~~k~g~~ivnvg~~~---~~~~~~~---l~~~~i~~~~~~~~~-~~~~~~~~~l~~~~~~~l~~~~~~~--  246 (258)
                      .+ . ..++.|++++.++++|...   .+.....   +..+++++.++.... +.|.         .++.|+.+++.+  
T Consensus       259 ~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~---------~~~~l~~~g~i~~~  328 (366)
T 2cdc_A          259 NILG-NVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQ---------QAVVHLASWKTLYP  328 (366)
T ss_dssp             HHHH-HHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCCCHHHHH---------HHHHHHHHHHHHSH
T ss_pred             HHHH-HHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCCCHHHHH---------HHHHHHHcCCCCcc
Confidence            55 5 7889999999999999762   2333334   556777887764432 2344         566677666655  


Q ss_pred             --HHHHHhhhcCC
Q psy16115        247 --LYLEILQTCPL  257 (258)
Q Consensus       247 --~~~~~~~~~~~  257 (258)
                        +...|++++||
T Consensus       329 ~~~~~~i~~~~~l  341 (366)
T 2cdc_A          329 KAAKMLITKTVSI  341 (366)
T ss_dssp             HHHTTSEEEEEET
T ss_pred             cchhhcEEEEEcH
Confidence              66667788876

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=98.99  E-value=1.9e-11  Score=108.82  Aligned_cols=107  Identities=16%  Similarity=0.107  Sum_probs=81.1

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----C-HHHHHHhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----K-LNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~-l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      +|++|+|+| .|.||+.+++.++.+|++|++.+. +.+.+.+++.|++. .     + +.+.+.+.|+++.|++....  
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~-~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~~~--  228 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDVG--  228 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC-HHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHHHH--
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec-cchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcHHH--
Confidence            799999997 999999999999999999988874 45566677778752 1     2 44444578999999987665  


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeee
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~  217 (258)
                      .+.++.++++++++.+|..........+..+++++.+.
T Consensus       229 ~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~  266 (321)
T 3tqh_A          229 IQSIDCLKETGCIVSVPTITAGRVIEVAKQKHRRAFGL  266 (321)
T ss_dssp             HHHGGGEEEEEEEEECCSTTHHHHHHHHHHTTCEEECC
T ss_pred             HHHHHhccCCCEEEEeCCCCchhhhhhhhhcceEEEEE
Confidence            48899999999999998764433334444556666653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=98.98  E-value=2.7e-10  Score=103.27  Aligned_cols=111  Identities=15%  Similarity=0.154  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCccc----CHHH---HHHhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVV----KLNE---VIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~----~l~e---~~~~aDvvi~~~~~~~~i~  179 (258)
                      +|++|+|+|.|.||+.+++.++.+|++|+++++++.+.+.+. +.|++..    +.+.   ...+.|+++.+++....+.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~  266 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLL  266 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHHH
Confidence            799999999999999999999999999999999998877766 6776521    2222   2235799999998776675


Q ss_pred             HHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeeeecc
Q psy16115        180 REHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~  219 (258)
                       +.++.++++++++++|...  .......+..+++++.++..
T Consensus       267 -~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~  307 (366)
T 1yqd_A          267 -PLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGI  307 (366)
T ss_dssp             -HHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEECCS
T ss_pred             -HHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEecC
Confidence             7899999999999999763  23334455667787777643

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.98  E-value=7e-11  Score=106.24  Aligned_cols=111  Identities=13%  Similarity=0.055  Sum_probs=84.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-------cCHHHHHH-----hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-------VKLNEVIR-----TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-------~~l~e~~~-----~aDvvi~~~~~  174 (258)
                      +|++|+|+|. |.||+.+++.++..|++|+++++++.+.+.+.+.|.+.       .++.+.+.     ..|+++.+++.
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            7899999999 89999999999999999999999988877777777531       13334443     47999999887


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC-h--hhchhhhcCCCceeeeecc
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN-T--EIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~-~--~~~~~~l~~~~i~~~~~~~  219 (258)
                      ...+. +.++.|+++++++++|... .  ......+..+++++.++..
T Consensus       249 ~~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~  295 (347)
T 2hcy_A          249 EAAIE-ASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYV  295 (347)
T ss_dssp             HHHHH-HHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCC
T ss_pred             HHHHH-HHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccC
Confidence            66664 7888999999999999763 2  2233344456777776643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.97  E-value=4.5e-10  Score=103.86  Aligned_cols=88  Identities=42%  Similarity=0.624  Sum_probs=82.2

Q ss_pred             heeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHH
Q psy16115          8 QWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQA   81 (258)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~   81 (258)
                      -|++|++||+|++|+++||.++      +|+|++.++++.+ .+|..+|+.+|..+|++||++.+..+++.++.+++.+.
T Consensus       368 i~lLaeGrlvNL~~a~GhP~~vm~~sf~~Q~la~~~l~~~~-~~~~~~v~~lP~~lDe~VA~l~L~~~g~~l~~lt~~Q~  446 (464)
T 3n58_A          368 LILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRT-DAYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQA  446 (464)
T ss_dssp             EEEEGGGSBHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHSG-GGCCSSEECCCHHHHHHHHHHHHGGGTCCCCCCCHHHH
T ss_pred             EEEEeCCceecccCCCCChHHHHhHHHHHHHHHHHHHHhCc-cccCCCeeECCHHHHHHHHHHHHHHcCCEeccCCHHHH
Confidence            3799999999999999999974      9999999999995 68999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCCcch
Q psy16115         82 KYMGLNKAGPFKPSY   96 (258)
Q Consensus        82 ~~~~~~~~g~~~~~~   96 (258)
                      +|+..++.||+.+..
T Consensus       447 ~yl~~~~~gp~k~~~  461 (464)
T 3n58_A          447 AYIGVTPQGPFKSEH  461 (464)
T ss_dssp             HHHTCCTTSCCSCTT
T ss_pred             HHcCCCCCCCCCCcc
Confidence            999999999987654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=98.97  E-value=4.3e-11  Score=107.46  Aligned_cols=109  Identities=19%  Similarity=0.120  Sum_probs=82.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c-----CHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V-----KLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~~~------~aDvvi~~~~~  174 (258)
                      .|++|+|+|. |.||+.+++.++..|++|+++++++.+.+.+.+.|++. .     ++.+.+.      ..|+++.+++ 
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            7899999999 99999999999999999999999998877776666542 1     2222222      4799999998 


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCCh---hhchhhhcCCCceeeeec
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~~~~~  218 (258)
                      ...+. ..++.++++++++.+|....   ......+..+++++.++.
T Consensus       245 ~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~  290 (343)
T 2eih_A          245 ALYFE-GVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGST  290 (343)
T ss_dssp             SSSHH-HHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECC
T ss_pred             HHHHH-HHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEec
Confidence            55554 78999999999999997621   233444555677777764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=98.97  E-value=7.6e-11  Score=109.56  Aligned_cols=111  Identities=20%  Similarity=0.165  Sum_probs=83.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CH-----------------------HHHH
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KL-----------------------NEVI  162 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l-----------------------~e~~  162 (258)
                      +|++|+|+|+ |.||+.+++.++..|++|+++++++++++.+++.|++.. +.                       .+.+
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  299 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV  299 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence            7999999998 999999999999999999999999998888888887531 11                       1111


Q ss_pred             -----HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCC-C--hhhchhhhcCCCceeeeeccC
Q psy16115        163 -----RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS-N--TEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       163 -----~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~-~--~~~~~~~l~~~~i~~~~~~~~  220 (258)
                           .+.|+++.+++.. .+ ...++.+++++.++++|.. .  .......+..+++++.++...
T Consensus       300 ~~~~g~g~Dvvid~~G~~-~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~  363 (447)
T 4a0s_A          300 VEKAGREPDIVFEHTGRV-TF-GLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGA  363 (447)
T ss_dssp             HHHHSSCCSEEEECSCHH-HH-HHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSC
T ss_pred             HHHhCCCceEEEECCCch-HH-HHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEecCCC
Confidence                 1479999998874 44 3788899999999999975 1  223344455556677666443

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=98.96  E-value=7.5e-11  Score=105.76  Aligned_cols=112  Identities=15%  Similarity=0.123  Sum_probs=87.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+|+|.+|...++.++.. |++|+++|+++++++.+++.|++.      .++.+.+.      +.|+++.+++.
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~  242 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAVA  242 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCSC
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEeccC
Confidence            799999999999999999999876 679999999999988888888752      23333332      35788899888


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      ...+. +.++.+++++.++.+|..  ........+..+++++.++...
T Consensus       243 ~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~gs~~~  289 (348)
T 4eez_A          243 RIAFE-QAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVG  289 (348)
T ss_dssp             HHHHH-HHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCCEEEECCSC
T ss_pred             cchhh-eeheeecCCceEEEEeccCCCCccCHHHHHhCCeEEEEEecC
Confidence            87775 889999999999999987  3344455566677888776543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.96  E-value=3.4e-09  Score=93.97  Aligned_cols=91  Identities=16%  Similarity=0.130  Sum_probs=75.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcccccc------H
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------R  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~------~  180 (258)
                      ...+|+|||+|.||..+|+.|...|.+|+++|+++.+.+...+.|... .+++++++++|+|++|..++..+.      .
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~   99 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKG   99 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTT
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCch
Confidence            457999999999999999999999999999999999887777778764 578999999999999975543222      1


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      +.+..++++.++||++..
T Consensus       100 ~l~~~l~~g~~vv~~st~  117 (310)
T 3doj_A          100 GVLEQICEGKGYIDMSTV  117 (310)
T ss_dssp             CGGGGCCTTCEEEECSCC
T ss_pred             hhhhccCCCCEEEECCCC
Confidence            334678999999999987

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.96  E-value=2.3e-09  Score=95.60  Aligned_cols=91  Identities=22%  Similarity=0.279  Sum_probs=75.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccccccH-----H
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTR-----E  181 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~-----~  181 (258)
                      ..++|+|||+|.||..+++.|...|.+|+++|+++.+.+...+.|+.. .+++++++++|+|++|..+...+..     +
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~  109 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQG  109 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchh
Confidence            457999999999999999999999999999999999877776777764 5789999999999999765433321     2


Q ss_pred             HHhcCCCCcEEEecCCC
Q psy16115        182 HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~  198 (258)
                      .++.++++.++||++..
T Consensus       110 ~~~~l~~~~~vi~~st~  126 (320)
T 4dll_A          110 VAAAMKPGSLFLDMASI  126 (320)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             HHhhCCCCCEEEecCCC
Confidence            34568999999999987

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.95  E-value=3.1e-09  Score=97.82  Aligned_cols=93  Identities=22%  Similarity=0.277  Sum_probs=74.5

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhH-HHHHhCCCcc---cCHHHHHHhCCeeeeccCcc-cccc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICA-LQACMDGFSV---VKLNEVIRTVDIVVTATGNK-NVVT  179 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~-~~a~~~g~~~---~~l~e~~~~aDvvi~~~~~~-~~i~  179 (258)
                      ++.|++|+|+|+|.||+.+++.++.+|+ +|+++|+++.+. ..+.+.|.+.   .++.+.+.++|+|+.|++.. .+++
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~~~~  243 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIH  243 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBC
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCceec
Confidence            3689999999999999999999999999 899999998875 3455556543   35777788999999998654 4566


Q ss_pred             HHHHhc--C----CCCcEEEecCCC
Q psy16115        180 REHMDK--M----KNGCVVCNMGHS  198 (258)
Q Consensus       180 ~~~l~~--~----k~g~~ivnvg~~  198 (258)
                      ++.++.  |    +++.+++|++.+
T Consensus       244 ~~~l~~~~lk~r~~~~~v~vdia~P  268 (404)
T 1gpj_A          244 VDDVREALRKRDRRSPILIIDIANP  268 (404)
T ss_dssp             HHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             HHHHHHHHHhccCCCCEEEEEccCC
Confidence            677776  4    356788998876

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.95  E-value=1.4e-09  Score=96.44  Aligned_cols=92  Identities=13%  Similarity=0.075  Sum_probs=74.9

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccc----cccHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVTRE  181 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~----~i~~~  181 (258)
                      ...++|+|||+|.||..+|+.|...|.+|++||+++.+.+.+.+.|... .++.++++++|+|++|.....    ++..+
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~   86 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGMP   86 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTST
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhccc
Confidence            4568999999999999999999999999999999998877666667654 578999999999999965443    33211


Q ss_pred             HHhcCCCCcEEEecCCC
Q psy16115        182 HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~  198 (258)
                      .+..++++.++||++..
T Consensus        87 ~l~~~~~g~ivid~st~  103 (306)
T 3l6d_A           87 GVARALAHRTIVDYTTN  103 (306)
T ss_dssp             THHHHTTTCEEEECCCC
T ss_pred             chhhccCCCEEEECCCC
Confidence            34456899999999987

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=98.95  E-value=3.2e-11  Score=106.33  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=80.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCH---HHH---HHhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKL---NEV---IRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l---~e~---~~~aDvvi~~~~~~~~i~  179 (258)
                      +|++|+|+|+ |.||+.+++.++..|++|+++++++.+.+.+++.|++. .+.   ++.   +.+.|+++. ++. ..+ 
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~~~-  201 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-KEV-  201 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-TTH-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-HHH-
Confidence            7999999998 99999999999999999999999998887787888753 222   222   246899999 877 455 


Q ss_pred             HHHHhcCCCCcEEEecCCCCh---hhchhhhcCCCceeeeec
Q psy16115        180 REHMDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~~~~~  218 (258)
                      .+.++.++++++++.+|....   ......+..+++++.++.
T Consensus       202 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~  243 (302)
T 1iz0_A          202 EESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFW  243 (302)
T ss_dssp             HHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECC
T ss_pred             HHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEe
Confidence            478999999999999987621   233344555667777653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.95  E-value=3.5e-09  Score=96.04  Aligned_cols=109  Identities=14%  Similarity=0.225  Sum_probs=84.4

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhC---CeeeeccCcc---cccc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTV---DIVVTATGNK---NVVT  179 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~a---Dvvi~~~~~~---~~i~  179 (258)
                      +.+.+|+|||+|.||..+|+.|...|.+|++||+++.+.+...+.|+.. .+++++++.+   |+|++|....   .++ 
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl-   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML-   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH-
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH-
Confidence            4678999999999999999999999999999999999887777777764 4799999999   9999996544   233 


Q ss_pred             HHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeee
Q psy16115        180 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEK  216 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~  216 (258)
                      .+....++++.+|||++...   .....+.+..+.+...+
T Consensus        99 ~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vd  138 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVD  138 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEe
Confidence            24566789999999999883   33344556655554433

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.93  E-value=4e-10  Score=99.69  Aligned_cols=106  Identities=15%  Similarity=0.146  Sum_probs=76.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcc----ccccHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNK----NVVTREHMD  184 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~----~~i~~~~l~  184 (258)
                      ++||+||+|.||..+|+.|...|.+|++||+++++.+...+.|... .++.++++.+|+|++|..+.    ..+..+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            6899999999999999999999999999999998876666667764 57899999999999996443    344456778


Q ss_pred             cCCCCcEEEecCCCChh---hchhhhcCCCceee
Q psy16115        185 KMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWE  215 (258)
Q Consensus       185 ~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~  215 (258)
                      .++++.++||.+..+.+   ...+.+..+.+...
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l  119 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV  119 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence            89999999999987322   22344554445443

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=98.93  E-value=6e-11  Score=107.03  Aligned_cols=110  Identities=16%  Similarity=0.238  Sum_probs=84.9

Q ss_pred             CCCEEEEE-cCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~Ii-G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|++|+|+ |.|.||+.+++.++..|++|+++++++++.+.+++.|++.      .++.+.+.     +.|+++.|++..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~  246 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA  246 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence            79999999 6799999999999999999999999999888887777652      13333333     479999998765


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC-C--hh-hchhhhcCCCceeeeecc
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS-N--TE-IDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~-~--~~-~~~~~l~~~~i~~~~~~~  219 (258)
                       .+ ...++.++++++++.+|.. .  .. .....+..+++++.+...
T Consensus       247 -~~-~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  292 (353)
T 4dup_A          247 -YF-ERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTM  292 (353)
T ss_dssp             -GH-HHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCS
T ss_pred             -HH-HHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEec
Confidence             44 3788999999999999975 2  12 444556567777777643

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=98.92  E-value=4.2e-11  Score=111.76  Aligned_cols=110  Identities=16%  Similarity=0.136  Sum_probs=83.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----C--H------------------HHH-
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----K--L------------------NEV-  161 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~--l------------------~e~-  161 (258)
                      +|++|+|+|+ |.||+.+++.++..|++|+++++++.+++.+++.|++..    +  +                  +++ 
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~  307 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIR  307 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHH
Confidence            7999999998 999999999999999999999999998888888886421    1  0                  122 


Q ss_pred             --H--HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCC-C--hhhchhhhcCCCceeeeecc
Q psy16115        162 --I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS-N--TEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       162 --~--~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~-~--~~~~~~~l~~~~i~~~~~~~  219 (258)
                        .  .+.|+++.|++. ..+. ..++.++++++++.+|.. .  .......+..+++++.++..
T Consensus       308 ~~t~g~g~Dvvid~~G~-~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~  370 (456)
T 3krt_A          308 ELTGGEDIDIVFEHPGR-ETFG-ASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHF  370 (456)
T ss_dssp             HHHTSCCEEEEEECSCH-HHHH-HHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECCS
T ss_pred             HHhCCCCCcEEEEcCCc-hhHH-HHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEecc
Confidence              1  147999999987 5554 788999999999999865 2  23334445455566666543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.92  E-value=3.2e-09  Score=93.74  Aligned_cols=90  Identities=21%  Similarity=0.235  Sum_probs=74.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--cCHHHHHHhCCeeeeccCcccccc------H
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--VKLNEVIRTVDIVVTATGNKNVVT------R  180 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--~~l~e~~~~aDvvi~~~~~~~~i~------~  180 (258)
                      .++|+|||+|.||..+++.|...|.+|+++|+++.+.+...+.|...  .+++++++++|+|++|..+...+.      .
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            46899999999999999999999999999999999887777777654  578888999999999975543332      1


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      +..+.++++.++||++..
T Consensus        87 ~l~~~l~~g~ivv~~st~  104 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTI  104 (303)
T ss_dssp             CCGGGSCTTCEEEECSCC
T ss_pred             hHHhhCCCCCEEEecCCC
Confidence            334668999999999987

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.92  E-value=5.9e-09  Score=91.25  Aligned_cols=126  Identities=12%  Similarity=0.073  Sum_probs=85.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------------C------------Cc-ccCHHHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------------G------------FS-VVKLNEVIR  163 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------------g------------~~-~~~l~e~~~  163 (258)
                      ++|+|||+|.||..+|+.+...|.+|+++|+++++.+.+.+.             +            .. ..++++.++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            799999999999999999999999999999999876654432             1            11 246778888


Q ss_pred             hCCeeeeccCcc----ccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeE
Q psy16115        164 TVDIVVTATGNK----NVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVID  238 (258)
Q Consensus       164 ~aDvvi~~~~~~----~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~  238 (258)
                      ++|+||+|....    ..+..+..+.+++++++++.+.+ +...+...+... -.+.+.+...     |   ......+.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~-~~~ig~h~~~-----p---~~~~~lve  155 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRG-DKFLALHFAN-----H---VWVNNTAE  155 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCG-GGEEEEEECS-----S---TTTSCEEE
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCC-cceEEEccCC-----C---cccCceEE
Confidence            999999996432    23333556678999999965555 555454555432 2444544332     1   22234556


Q ss_pred             EecCCC
Q psy16115        239 LFRKPK  244 (258)
Q Consensus       239 l~~~~~  244 (258)
                      ++.+++
T Consensus       156 vv~~~~  161 (283)
T 4e12_A          156 VMGTTK  161 (283)
T ss_dssp             EEECTT
T ss_pred             EEeCCC
Confidence            677653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.90  E-value=2.8e-09  Score=93.24  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=73.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcccccc------HHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~------~~~  182 (258)
                      ++|+|||+|.||..+++.|...|.+|+++|+++.+.+...+.|... .+++++++++|+|++|..+...+.      .+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            4799999999999999999999999999999999877666667654 478999999999999975543222      133


Q ss_pred             HhcCCCCcEEEecCCC
Q psy16115        183 MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~  198 (258)
                      ++.++++.+++|++..
T Consensus        82 ~~~l~~g~~vv~~st~   97 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTV   97 (287)
T ss_dssp             GGTCCTTCEEEECSCC
T ss_pred             hhcccCCCEEEECCCC
Confidence            4668899999999987

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=98.90  E-value=2.6e-10  Score=102.51  Aligned_cols=127  Identities=13%  Similarity=0.006  Sum_probs=89.2

Q ss_pred             CC-CEEEEE-cCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH------HhCCeeeeccC
Q psy16115        108 GG-KQVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI------RTVDIVVTATG  173 (258)
Q Consensus       108 ~g-~~V~Ii-G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~------~~aDvvi~~~~  173 (258)
                      .| ++|+|. |.|.||+.+++.++..|++|+++++++++.+.+++.|++.      .++.+.+      ...|+++.|++
T Consensus       163 ~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g  242 (349)
T 3pi7_A          163 EGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVT  242 (349)
T ss_dssp             HCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCC
Confidence            44 677666 8999999999999999999999999999988888888652      1233322      25899999988


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC---Chhhch-hhhcCCCceeeeeccC----------cceeecCCCccCCCce
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS---NTEIDV-NSLRTPDLTWEKVRSQ----------VDHVIWPDVNLKNNTV  236 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~-~~l~~~~i~~~~~~~~----------~~~~~~~~~~l~~~~~  236 (258)
                      ....  .+.++.++++++++.+|..   ...... ..+..+++++.+....          .+.|.....+++++.+
T Consensus       243 ~~~~--~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l  317 (349)
T 3pi7_A          243 GPLA--SAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRW  317 (349)
T ss_dssp             HHHH--HHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSC
T ss_pred             ChhH--HHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCc
Confidence            7654  4788999999999999964   222333 4455567777765422          1335545555555543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=98.90  E-value=8.2e-10  Score=99.73  Aligned_cols=110  Identities=15%  Similarity=0.069  Sum_probs=84.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCccc----CHHHH---HHhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVV----KLNEV---IRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~----~l~e~---~~~aDvvi~~~~~~~~i~  179 (258)
                      +|++|+|+|+|.||+.+++.++.+|++|+++++++++.+.+. +.|++..    +.+.+   ....|+++.+++....+.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~  259 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE  259 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHH
Confidence            789999999999999999999999999999999988877776 7776532    22222   225799999998877775


Q ss_pred             HHHHhcCCCCcEEEecCCCC--hh-hchhhhcCCCceeeeecc
Q psy16115        180 REHMDKMKNGCVVCNMGHSN--TE-IDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~--~~-~~~~~l~~~~i~~~~~~~  219 (258)
                       +.++.++++++++.+|...  .. .... +..+++++.++..
T Consensus       260 -~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~  300 (357)
T 2cf5_A          260 -PYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFI  300 (357)
T ss_dssp             -HHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCS
T ss_pred             -HHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEcc
Confidence             7899999999999999762  22 2223 4456677766543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.88  E-value=2.9e-09  Score=94.83  Aligned_cols=91  Identities=19%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCc---ccCHHH-HHHhCCeeeeccCcc---ccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS---VVKLNE-VIRTVDIVVTATGNK---NVV  178 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~---~~~l~e-~~~~aDvvi~~~~~~---~~i  178 (258)
                      ..++|+|||+|.||..+|+.++..|.  +|+++|+++.+.+.+.+.|..   ..++++ .++++|+|++|+...   .++
T Consensus        32 ~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl  111 (314)
T 3ggo_A           32 SMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIA  111 (314)
T ss_dssp             SCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHHH
Confidence            34799999999999999999999998  999999999888878888863   346777 889999999996433   233


Q ss_pred             cHHHHhcCCCCcEEEecCCCC
Q psy16115        179 TREHMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~~  199 (258)
                       ++....+++++++++++...
T Consensus       112 -~~l~~~l~~~~iv~d~~Svk  131 (314)
T 3ggo_A          112 -KKLSYILSEDATVTDQGSVK  131 (314)
T ss_dssp             -HHHHHHSCTTCEEEECCSCC
T ss_pred             -HHHhhccCCCcEEEECCCCc
Confidence             35556789999999998763

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=98.88  E-value=2.1e-10  Score=103.69  Aligned_cols=109  Identities=15%  Similarity=0.118  Sum_probs=82.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCcc-cC----HHHHHH------hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSV-VK----LNEVIR------TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~-~~----l~e~~~------~aDvvi~~~~~~  175 (258)
                      +|++|+|+|+|.+|+.+++.++.+ |++|+++++++++.+.+++.|++. .+    +.+.++      ..|+++.+++..
T Consensus       186 ~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~  265 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  265 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCCc
Confidence            799999999999999999999999 999999999999988888888753 11    222221      479999999877


Q ss_pred             c--cccHHHHhcCCCCcEEEecCCCCh-hhchhhhcCCCceeeeecc
Q psy16115        176 N--VVTREHMDKMKNGCVVCNMGHSNT-EIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       176 ~--~i~~~~l~~~k~g~~ivnvg~~~~-~~~~~~l~~~~i~~~~~~~  219 (258)
                      .  .+. +.++.  ++++++.+|.... ......+..+++++.++..
T Consensus       266 ~~~~~~-~~~~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~i~g~~~  309 (359)
T 1h2b_A          266 ATVDYT-PYLLG--RMGRLIIVGYGGELRFPTIRVISSEVSFEGSLV  309 (359)
T ss_dssp             HHHHHG-GGGEE--EEEEEEECCCSSCCCCCHHHHHHTTCEEEECCS
T ss_pred             hHHHHH-HHhhc--CCCEEEEEeCCCCCCCCHHHHHhCCcEEEEecC
Confidence            5  665 66666  8889999987622 3334445556777777644

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.87  E-value=4.3e-09  Score=92.75  Aligned_cols=88  Identities=15%  Similarity=0.165  Sum_probs=74.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccc----cccHHHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVTREHM  183 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~----~i~~~~l  183 (258)
                      .++|+|||+|.||..+++.|...|.+|+++|+++.+.+...+.|... .+++++++ +|+|++|..+..    ++ .+..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            36899999999999999999999999999999999877777778764 47889888 999999975442    34 3566


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                      +.++++.++||.+..
T Consensus        93 ~~l~~g~ivv~~st~  107 (296)
T 3qha_A           93 GHAKPGTVIAIHSTI  107 (296)
T ss_dssp             TTCCTTCEEEECSCC
T ss_pred             HhcCCCCEEEEeCCC
Confidence            778999999999987

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.87  E-value=3.2e-09  Score=95.50  Aligned_cols=90  Identities=21%  Similarity=0.340  Sum_probs=72.4

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh-HHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC-ALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREH  182 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~  182 (258)
                      +.+++|+|||+|.||..+|+.|+..|.+|+++|+++.+ ...+.+.|+...++++.++++|+|++|+...   .++..+.
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~~~~v~~~~i   93 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEEI   93 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHHT
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHHHHHHHHHHH
Confidence            57889999999999999999999999999999998765 4556677876668889999999999996433   2332133


Q ss_pred             HhcCCCCcEEEecC
Q psy16115        183 MDKMKNGCVVCNMG  196 (258)
Q Consensus       183 l~~~k~g~~ivnvg  196 (258)
                      ...+++++++++++
T Consensus        94 ~~~l~~~~ivi~~~  107 (338)
T 1np3_A           94 EPNLKKGATLAFAH  107 (338)
T ss_dssp             GGGCCTTCEEEESC
T ss_pred             HhhCCCCCEEEEcC
Confidence            45689999999875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=98.86  E-value=4.4e-10  Score=100.89  Aligned_cols=111  Identities=12%  Similarity=0.045  Sum_probs=86.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHHhCCCcc-cCHH---H---HHH---hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFSV-VKLN---E---VIR---TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~---e---~~~---~aDvvi~~~~~~  175 (258)
                      +|++|+|+|+|.||+.+++.++.+  |++|+++++++++.+.+++.|++. .+..   +   .+.   ..|+++.+++..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            799999999999999999999999  999999999999888888888753 2321   1   222   479999999887


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC--hhhchhhhcCCCceeeeecc
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN--TEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~--~~~~~~~l~~~~i~~~~~~~  219 (258)
                      ..+. +.++.++++++++.+|...  .......+..+++++.++..
T Consensus       250 ~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~  294 (344)
T 2h6e_A          250 ETTY-NLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNY  294 (344)
T ss_dssp             HHHH-HHHHHEEEEEEEEECCCCSSCCCCCHHHHHHTTCEEEECCS
T ss_pred             HHHH-HHHHHhhcCCEEEEeCCCCCCcccCHHHHhhCCcEEEEEec
Confidence            6675 7889999999999998762  22333445556777777643

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.85  E-value=4e-09  Score=95.82  Aligned_cols=105  Identities=19%  Similarity=0.292  Sum_probs=80.6

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-HHhCCCcccCHHHHHH-hCCeeeeccCccccccHHHH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVVKLNEVIR-TVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~~~g~~~~~l~e~~~-~aDvvi~~~~~~~~i~~~~l  183 (258)
                      ++.|++|+|+|+|.||+.+|+.|..+|++|+++|+++.++.. +.+.+.+..+.++++. .+|+++.|. +.+.++.+.+
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-~~~~I~~~~~  248 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-LGAVLNDFTI  248 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-CSCCBSTTHH
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-hHHHhCHHHH
Confidence            689999999999999999999999999999999999887653 3334666666677665 799999985 6678887788


Q ss_pred             hcCCCCcEEEecCCCCh--hhchhhhcCCCc
Q psy16115        184 DKMKNGCVVCNMGHSNT--EIDVNSLRTPDL  212 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~--~~~~~~l~~~~i  212 (258)
                      +.++ ..+|++.++++.  +...+.|..+.+
T Consensus       249 ~~lg-~~iV~e~An~p~t~~ea~~~L~~~Gi  278 (364)
T 1leh_A          249 PQLK-AKVIAGSADNQLKDPRHGKYLHELGI  278 (364)
T ss_dssp             HHCC-CSEECCSCSCCBSSHHHHHHHHHHTC
T ss_pred             HhCC-CcEEEeCCCCCcccHHHHHHHHhCCC
Confidence            8884 457778777632  223455555444

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=98.85  E-value=2.7e-10  Score=102.81  Aligned_cols=109  Identities=13%  Similarity=0.068  Sum_probs=82.0

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      .|++|+|.| .|.||+.+++.++..|++|+++++++++.+.+.+.|.+.      .+..+.+.      ..|+++.|++.
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~  241 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGG  241 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCG
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCc
Confidence            789999999 699999999999999999999999998877776666542      12222222      37999999987


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC---hhhch-hhhcCCCceeeeec
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN---TEIDV-NSLRTPDLTWEKVR  218 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~-~~l~~~~i~~~~~~  218 (258)
                      . .+. +.++.++++++++.+|...   ..... ..+..+++++.++.
T Consensus       242 ~-~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~  287 (354)
T 2j8z_A          242 S-YWE-KNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSL  287 (354)
T ss_dssp             G-GHH-HHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECC
T ss_pred             h-HHH-HHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEE
Confidence            6 454 7789999999999998752   22333 44555677777653

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=98.85  E-value=3.5e-09  Score=95.08  Aligned_cols=110  Identities=19%  Similarity=0.209  Sum_probs=87.8

Q ss_pred             CCCEEEEE-cCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHHHHH-----hCCeeeeccCccc
Q psy16115        108 GGKQVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNEVIR-----TVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~Ii-G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~~-----~aDvvi~~~~~~~  176 (258)
                      +|++|+|+ |.|.||+.+++.++..|++|+++++++++.+.+++.|++..     ++.+.++     ..|+++.|++...
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~  229 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM  229 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchH
Confidence            69999999 79999999999999999999999999998888888886521     2333332     3799999998777


Q ss_pred             cccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeec
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~  218 (258)
                      .+. ..++.++++++++.++..........+..+++++.+..
T Consensus       230 ~~~-~~~~~l~~~G~iv~~~~~~~~~~~~~~~~~~~~~~~~~  270 (346)
T 3fbg_A          230 YYD-DMIQLVKPRGHIATIVAFENDQDLNALKPKSLSFSHEF  270 (346)
T ss_dssp             HHH-HHHHHEEEEEEEEESSCCSSCBCGGGGTTTTCEEEECC
T ss_pred             HHH-HHHHHhccCCEEEEECCCCCCCccccccccceEEEEEE
Confidence            675 78899999999999886555555666777778777653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=98.83  E-value=2.8e-09  Score=95.63  Aligned_cols=109  Identities=21%  Similarity=0.299  Sum_probs=79.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHHHHH------hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNEVIR------TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~~------~aDvvi~~~~~~  175 (258)
                      .|++|+|+|+ |.||+.+++.++..|++|+++++++++.+.+++.|++..     ++.+.+.      +.|+++.|++..
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~  238 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP  238 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence            7999999998 999999999999999999999999998888877776532     2333322      479999998875


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeec
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~  218 (258)
                       .+ .+.++.++++++++.+|...   .......+..+++++.+..
T Consensus       239 -~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~  282 (342)
T 4eye_A          239 -AF-DDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVA  282 (342)
T ss_dssp             -CH-HHHHHTEEEEEEEEEC----------CCCCGGGTTCEEEECC
T ss_pred             -HH-HHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEe
Confidence             44 37899999999999999762   2334445556677776653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.82  E-value=7.4e-09  Score=90.09  Aligned_cols=88  Identities=20%  Similarity=0.312  Sum_probs=71.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCc---ccCHHHHHH-hCCeeeeccCcc---ccccH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS---VVKLNEVIR-TVDIVVTATGNK---NVVTR  180 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~-~aDvvi~~~~~~---~~i~~  180 (258)
                      ++|+|||+|.||..+++.++..|.  +|+++|+++.+.+.+.+.|..   ..++++.++ ++|+|++|+...   .++. 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~-   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK-   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHHH-
Confidence            589999999999999999999998  899999999887777677764   346778888 999999996433   3343 


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      +....++++.++++++..
T Consensus        81 ~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           81 KLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             HHHhhCCCCcEEEECCCC
Confidence            445668999999999876

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.82  E-value=1.2e-08  Score=90.94  Aligned_cols=89  Identities=12%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCCh-------hhHHHHHhCCCccc-CHHHHHHhCCeeeeccCcccccc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDP-------ICALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~-------~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      ..+|+|||+|.||..+|+.|...| .+|+++|+++       ...+...+.|. .. ++.++++++|+|++|..+.....
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~~e~~~~aDvVi~avp~~~~~~  102 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDDVAGIACADVVLSLVVGAATKA  102 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESSGGGGGGCSEEEECCCGGGHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCHHHHHhcCCEEEEecCCHHHHH
Confidence            368999999999999999999999 9999999997       33344445676 66 78899999999999965443221


Q ss_pred             --HHHHhcCCCCcEEEecCCC
Q psy16115        180 --REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       180 --~~~l~~~k~g~~ivnvg~~  198 (258)
                        .+..+.++++.++||++..
T Consensus       103 ~~~~i~~~l~~~~ivv~~st~  123 (317)
T 4ezb_A          103 VAASAAPHLSDEAVFIDLNSV  123 (317)
T ss_dssp             HHHHHGGGCCTTCEEEECCSC
T ss_pred             HHHHHHhhcCCCCEEEECCCC
Confidence              3556678999999999976

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.81  E-value=1.4e-08  Score=89.73  Aligned_cols=124  Identities=14%  Similarity=0.200  Sum_probs=82.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------CCcc-cCHHHHHHhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------GFSV-VKLNEVIRTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------g~~~-~~l~e~~~~aDvvi~~~~~~~~i~  179 (258)
                      ..++|+|||+|.||..+|+.+. .|.+|+++|+++++++.+.+.       ++.. .++++ +++||+||+|.....-+.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk   88 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTK   88 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHH
Confidence            5699999999999999999999 999999999999887766554       4432 35655 889999999964443332


Q ss_pred             HHH---HhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCC
Q psy16115        180 REH---MDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKP  243 (258)
Q Consensus       180 ~~~---l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~  243 (258)
                      ...   ++.+ ++++++ |+|.-+.......+.. .-...+.+...     |.   .....+.++.++
T Consensus        89 ~~l~~~l~~~-~~~IlasntSti~~~~~a~~~~~-~~r~~G~Hf~~-----Pv---~~~~lveiv~g~  146 (293)
T 1zej_A           89 VEVLREVERL-TNAPLCSNTSVISVDDIAERLDS-PSRFLGVHWMN-----PP---HVMPLVEIVISR  146 (293)
T ss_dssp             HHHHHHHHTT-CCSCEEECCSSSCHHHHHTTSSC-GGGEEEEEECS-----ST---TTCCEEEEEECT
T ss_pred             HHHHHHHhcC-CCCEEEEECCCcCHHHHHHHhhc-ccceEeEEecC-----cc---ccCCEEEEECCC
Confidence            222   5566 898884 7776554433333322 22344443222     22   234677788874

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.81  E-value=3.3e-09  Score=98.07  Aligned_cols=106  Identities=14%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             cCcc-cCCCEEEEEcCchHHHHHHHHHHh-CCCEEEEEe-CChhhHHHHHhCCCcccCHHHHHHhC---CeeeeccCccc
Q psy16115        103 TDVM-FGGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITE-IDPICALQACMDGFSVVKLNEVIRTV---DIVVTATGNKN  176 (258)
Q Consensus       103 ~~~~-l~g~~V~IiG~G~IG~~~a~~l~~-~G~~Vi~~d-~~~~~~~~a~~~g~~~~~l~e~~~~a---Dvvi~~~~~~~  176 (258)
                      .+.+ +.|+||+|+|+|.||+.+|+.++. +|++|++++ ++...      ......+++++++.+   +.+...+++.+
T Consensus       205 ~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~------~~~~gvdl~~L~~~~d~~~~l~~l~~t~~  278 (419)
T 1gtm_A          205 LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI------YNPDGLNADEVLKWKNEHGSVKDFPGATN  278 (419)
T ss_dssp             TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE------EEEEEECHHHHHHHHHHHSSSTTCTTSEE
T ss_pred             hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc------cCccCCCHHHHHHHHHhcCEeecCccCee
Confidence            4667 999999999999999999999999 999999884 43210      111223566665533   43322245666


Q ss_pred             cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                       ++.+.|..||+ .++||++|+   ++++ +++|+.+.|...+.
T Consensus       279 -i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aAn  319 (419)
T 1gtm_A          279 -ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVAN  319 (419)
T ss_dssp             -ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCSS
T ss_pred             -eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEeeC
Confidence             78888989988 599999999   6666 68898876655443

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.81  E-value=2.4e-08  Score=87.46  Aligned_cols=101  Identities=18%  Similarity=0.280  Sum_probs=77.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcccccc------HHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT------REH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~------~~~  182 (258)
                      .+|+|||+|.||..+++.+...|.+|+++|+++.+.+...+.|... .++++.++++|+|++|+.++..+.      .+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            4899999999999999999999999999999998877666667653 478888999999999976443222      133


Q ss_pred             HhcCCCCcEEEecCCCC---hhhchhhhcCC
Q psy16115        183 MDKMKNGCVVCNMGHSN---TEIDVNSLRTP  210 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~---~~~~~~~l~~~  210 (258)
                      .+.++++.++++++.+.   .+.+.+.+...
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  116 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAK  116 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            45689999999999883   23344455443

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.80  E-value=4.2e-09  Score=97.29  Aligned_cols=89  Identities=42%  Similarity=0.629  Sum_probs=81.1

Q ss_pred             hheeeeccccccccccCCCcchh------hHHHHHHHHHhCCCC--CCCCc----eEECChhhhHHHHhcccCccccccc
Q psy16115          7 VQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAG--RYKSD----VYLLPKKMDEYVASLHLPTFDAHLT   74 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~--~~~~~----V~~lP~~~~~~vA~l~i~~~~~~~~   74 (258)
                      .-|+++++||+|++|+++||.++      +|+|++.++++++ .  +|..+    |+.+|..+|++||++.+..+++.++
T Consensus       333 ~I~LLaeGrLvNl~~~~Ghp~~vm~~sf~~q~la~~~l~~~~-~~~~~~~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~  411 (436)
T 3h9u_A          333 HIILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNR-DTGKYPRGAKAQVYFLPKKLDEKVAALHLGKLGAKLT  411 (436)
T ss_dssp             EEEEEGGGSCHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTT-TTTSSCC---CCEEECCHHHHHHHHHHHHHHHTCCCC
T ss_pred             EEEEecCCCeecccCCCCChHHHhhHHHHHHHHHHHHHHhCC-CcccCCCCCCceeeeCCHHHHHHHHHHHHHHcCCccc
Confidence            44799999999999999999984      9999999999995 4  78888    9999999999999999999999999


Q ss_pred             cCCHHHHHhhhcccCCCCCcch
Q psy16115         75 ELSDEQAKYMGLNKAGPFKPSY   96 (258)
Q Consensus        75 ~~~~~~~~~~~~~~~g~~~~~~   96 (258)
                      .+++.+.+|+..++.||+.+..
T Consensus       412 ~lt~~q~~y~~~~~~g~~~~~~  433 (436)
T 3h9u_A          412 KLTPKQAEYINCPVDGPFKPDH  433 (436)
T ss_dssp             CCCHHHHHHTTSCTTCCCSCTT
T ss_pred             cCCHHHHHhcCCCcCCCCCccc
Confidence            9999999999999999987654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.79  E-value=2.1e-08  Score=86.80  Aligned_cols=90  Identities=19%  Similarity=0.282  Sum_probs=70.8

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-HHhCCCcccCHHHHHHhCCeeeeccCcc------c
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSVVKLNEVIRTVDIVVTATGNK------N  176 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~~~g~~~~~l~e~~~~aDvvi~~~~~~------~  176 (258)
                      +.++.| +++|+|+|.+|+.+++.|...|++|+++|+++++.+. +.+.+....++++. +++|+|+.|+...      .
T Consensus       112 ~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~  189 (263)
T 2d5c_A          112 GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSAS  189 (263)
T ss_dssp             TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred             CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence            456789 9999999999999999999999999999999876543 22334444467777 8999999997443      2


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.   .+.++++.+++|++..
T Consensus       190 ~l~---~~~l~~g~~viD~~~~  208 (263)
T 2d5c_A          190 PLP---AELFPEEGAAVDLVYR  208 (263)
T ss_dssp             SSC---GGGSCSSSEEEESCCS
T ss_pred             CCC---HHHcCCCCEEEEeecC
Confidence            332   4568999999999887

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.78  E-value=2.9e-08  Score=88.14  Aligned_cols=91  Identities=13%  Similarity=0.219  Sum_probs=72.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC--hhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcccccc--HH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID--PICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVT--RE  181 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~--~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~--~~  181 (258)
                      ...+|+|||+|.||..+++.|...|. +|+++|++  +.+.+.+.+.|+.. .++.++++++|+|++|..+.....  .+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~  102 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQ  102 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHh
Confidence            35799999999999999999999999 99999997  46555566677764 478899999999999965443221  35


Q ss_pred             HHhcCCCCcEEEecCCC
Q psy16115        182 HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~  198 (258)
                      ..+.++++.++||++..
T Consensus       103 l~~~l~~~~ivvd~st~  119 (312)
T 3qsg_A          103 AGPHLCEGALYADFTSC  119 (312)
T ss_dssp             HGGGCCTTCEEEECCCC
T ss_pred             hHhhcCCCCEEEEcCCC
Confidence            56678999999999876

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.75  E-value=1.2e-08  Score=94.10  Aligned_cols=87  Identities=71%  Similarity=1.081  Sum_probs=79.2

Q ss_pred             hheeeeccccccccccCCCcchh------hHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHH
Q psy16115          7 VQWTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQ   80 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~   80 (258)
                      .-++++++||+|++|+. ||.++      +|+|++.++++++..+|..+|+.+|..+|++||++.+..+++.++.+++.+
T Consensus       342 ~I~LLAeGrLvNl~~~~-hp~~vm~~sf~~q~la~~~l~~~~~~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q  420 (435)
T 3gvp_A          342 RIVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQ  420 (435)
T ss_dssp             EEEEEGGGSBHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHCCTTTSCSSEEECCHHHHHHHHHHHGGGGTCCCCCCCHHH
T ss_pred             EEEEecCCCEeeecCCC-CcHHHHhHHHHHHHHHHHHHHhCcccccCCCeeeCCHHHHHHHHHHHHHhcCCEeccCCHHH
Confidence            44789999999999994 99984      999999999998424899999999999999999999999999999999999


Q ss_pred             HHhhhcccCCCCCc
Q psy16115         81 AKYMGLNKAGPFKP   94 (258)
Q Consensus        81 ~~~~~~~~~g~~~~   94 (258)
                      .+|+..++.||+.+
T Consensus       421 ~~y~~~~~~g~~k~  434 (435)
T 3gvp_A          421 AKYLGLNKNGPFKP  434 (435)
T ss_dssp             HHHHTCCTTCCCSC
T ss_pred             HHHcCCCCCCCCCC
Confidence            99999999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.74  E-value=3.5e-08  Score=84.51  Aligned_cols=92  Identities=21%  Similarity=0.365  Sum_probs=66.6

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh--------------HHHHH-hCC-CcccCHHHHHHhCCee
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC--------------ALQAC-MDG-FSVVKLNEVIRTVDIV  168 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~--------------~~~a~-~~g-~~~~~l~e~~~~aDvv  168 (258)
                      .++.+++|+|||+|.||..+|+.|...|.+|+++|+++++              ..... ..+ ....++.++++++|+|
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvV   94 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELV   94 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEE
Confidence            3568999999999999999999999999999999999886              22222 223 3455788999999999


Q ss_pred             eeccCcccccc--HHH-HhcCCCCcEEEecCC
Q psy16115        169 VTATGNKNVVT--REH-MDKMKNGCVVCNMGH  197 (258)
Q Consensus       169 i~~~~~~~~i~--~~~-l~~~k~g~~ivnvg~  197 (258)
                      ++|........  .+. ...+ ++.++|+++.
T Consensus        95 ilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           95 VNATEGASSIAALTAAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             EECSCGGGHHHHHHHHCHHHH-TTSEEEECCC
T ss_pred             EEccCcHHHHHHHHHhhhhhc-CCCEEEECCC
Confidence            99965443321  122 2233 7899999994

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.74  E-value=2.9e-08  Score=86.66  Aligned_cols=91  Identities=20%  Similarity=0.221  Sum_probs=71.5

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCccc-CHHHHHHhCCeeeeccCccc-----
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVV-KLNEVIRTVDIVVTATGNKN-----  176 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~-~l~e~~~~aDvvi~~~~~~~-----  176 (258)
                      +.++.|++++|+|+|.+|+.+++.|...|++|+++|+++++.+... ..++... ++.+.++++|+|+.|+....     
T Consensus       124 ~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~  203 (275)
T 2hk9_A          124 IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDP  203 (275)
T ss_dssp             CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCC
T ss_pred             CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCC
Confidence            3457899999999999999999999999999999999987755432 3354433 67788889999999964332     


Q ss_pred             -cccHHHHhcCCCCcEEEecCC
Q psy16115        177 -VVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       177 -~i~~~~l~~~k~g~~ivnvg~  197 (258)
                       .++   .+.++++.+++|++.
T Consensus       204 ~~i~---~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          204 EIFN---YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSSC---GGGCCTTSEEEESSS
T ss_pred             CCCC---HHHcCCCCEEEEcCC
Confidence             232   356899999999987

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.73  E-value=2.5e-08  Score=93.12  Aligned_cols=90  Identities=22%  Similarity=0.293  Sum_probs=71.6

Q ss_pred             cCC-CEEEEEcCchHHHHHHHHHHhC------CCEEEEEeCCh-hhHHHHHhCCCcc-----cCHHHHHHhCCeeeeccC
Q psy16115        107 FGG-KQVVLCGYGEVGKGCCQSLKGL------GCVIYITEIDP-ICALQACMDGFSV-----VKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g-~~V~IiG~G~IG~~~a~~l~~~------G~~Vi~~d~~~-~~~~~a~~~g~~~-----~~l~e~~~~aDvvi~~~~  173 (258)
                      +.| ++|+|||+|.||.++|+.|+..      |.+|++.++.. .....+.+.|+..     .++.+++++||+|+++..
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP  130 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLIS  130 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSC
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCC
Confidence            689 9999999999999999999998      99988766553 4455677788874     578999999999999853


Q ss_pred             c---cccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 N---KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~---~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .   ..++. +....||+|++++.. .|
T Consensus       131 ~~~~~eVl~-eI~p~LK~GaILs~A-aG  156 (525)
T 3fr7_A          131 DAAQADNYE-KIFSHMKPNSILGLS-HG  156 (525)
T ss_dssp             HHHHHHHHH-HHHHHSCTTCEEEES-SS
T ss_pred             hHHHHHHHH-HHHHhcCCCCeEEEe-CC
Confidence            2   24564 678889999996554 44

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=98.73  E-value=5.1e-10  Score=99.61  Aligned_cols=89  Identities=24%  Similarity=0.276  Sum_probs=71.3

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      .|++|+|.| .|.||+.+++.++..|++|+++++++++.+.+.+.|.+.      .+..+.+.      ..|+++.+++ 
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-  218 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-  218 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-
Confidence            789999999 699999999999999999999999988877776666532      12222222      3799999998 


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+. ..++.++++++++.+|..
T Consensus       219 ~~~~~-~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          219 RDTWE-RSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             GGGHH-HHHHTEEEEEEEEECCCT
T ss_pred             hHHHH-HHHHHhcCCCEEEEEecC
Confidence            55554 789999999999999875

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.73  E-value=2.1e-08  Score=84.27  Aligned_cols=89  Identities=12%  Similarity=0.228  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHH--Hhc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREH--MDK  185 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~--l~~  185 (258)
                      .+.+|+|||+|.||..+++.+...|.+|+++|+++++.+...+.|+...++++.++++|+|++|+.... +. +.  ++.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~~~-~~-~v~~l~~  104 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREH-YS-SLCSLSD  104 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCGGG-SG-GGGGGHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCChHH-HH-HHHHHHH
Confidence            346899999999999999999999999999999988766555556665578888889999999975332 21 22  222


Q ss_pred             CCCCcEEEecCCC
Q psy16115        186 MKNGCVVCNMGHS  198 (258)
Q Consensus       186 ~k~g~~ivnvg~~  198 (258)
                      +.++.++++++.+
T Consensus       105 ~~~~~~vv~~s~g  117 (215)
T 2vns_A          105 QLAGKILVDVSNP  117 (215)
T ss_dssp             HHTTCEEEECCCC
T ss_pred             hcCCCEEEEeCCC
Confidence            2378999999998

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=98.72  E-value=2.4e-08  Score=90.29  Aligned_cols=109  Identities=15%  Similarity=0.158  Sum_probs=86.3

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHh-CCCEEEEEeCChhhHHHHHhCCCccc-----CHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKG-LGCVIYITEIDPICALQACMDGFSVV-----KLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~-~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|++|+|+| .|.||+.+++.++. .|++|+++++++++.+.+++.|++..     ++.+.+.     +.|+++.|++..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~  250 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTD  250 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCch
Confidence            689999999 99999999999998 58999999999999888888887532     2333333     479999999887


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeec
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~  218 (258)
                      ..+. +.++.++++++++.+|.. .......+..+++++.+..
T Consensus       251 ~~~~-~~~~~l~~~G~iv~~g~~-~~~~~~~~~~k~~~i~~~~  291 (363)
T 4dvj_A          251 KHAA-EIADLIAPQGRFCLIDDP-SAFDIMLFKRKAVSIHHEL  291 (363)
T ss_dssp             HHHH-HHHHHSCTTCEEEECSCC-SSCCGGGGTTTTCEEEECC
T ss_pred             hhHH-HHHHHhcCCCEEEEECCC-CccchHHHhhccceEEEEE
Confidence            7775 789999999999999653 3344556667777776643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=98.72  E-value=6.4e-10  Score=99.92  Aligned_cols=111  Identities=14%  Similarity=0.163  Sum_probs=83.1

Q ss_pred             CCCEEEEEcCc-hHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCccc------CH----HHHH--HhCCeeeeccC
Q psy16115        108 GGKQVVLCGYG-EVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVV------KL----NEVI--RTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G-~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~~------~l----~e~~--~~aDvvi~~~~  173 (258)
                      +|++|+|+|.| .||+.+++.++.. |++|+++++++.+.+.+++.|.+..      +.    .+..  ...|+++.+++
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  249 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  249 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCC
Confidence            78999999999 8999999999999 9999999999988777776665421      22    2222  24799999998


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCCC-h-hhchhhhcCCCceeeeecc
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHSN-T-EIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~~-~-~~~~~~l~~~~i~~~~~~~  219 (258)
                      ....+. +.++.++++++++.+|... . ......+..+++++.++..
T Consensus       250 ~~~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~  296 (347)
T 1jvb_A          250 SEKTLS-VYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLV  296 (347)
T ss_dssp             CHHHHT-TGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCS
T ss_pred             CHHHHH-HHHHHHhcCCEEEEECCCCCCCCCCHHHHHhCceEEEEEec
Confidence            776665 7888999999999998653 2 2333344455677776543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=98.72  E-value=1.1e-09  Score=98.25  Aligned_cols=107  Identities=18%  Similarity=0.135  Sum_probs=79.9

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHHHH------hCCeeeeccCccc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEVIR------TVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~~~------~aDvvi~~~~~~~  176 (258)
                      +|++|+|+| .|.||+.+++.++..|++|+++ .++.+++.+++.|++..    ++.+.+.      +.|+++.|++. .
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~-~  227 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGG-P  227 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCT-H
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCc-H
Confidence            799999999 7999999999999999999998 78888877777777532    2333322      47999999885 3


Q ss_pred             cccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeec
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~  218 (258)
                      .+. ..++.+++++.++.+|... ......+..+++++.++.
T Consensus       228 ~~~-~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~g~~  267 (343)
T 3gaz_A          228 VLD-ASFSAVKRFGHVVSCLGWG-THKLAPLSFKQATYSGVF  267 (343)
T ss_dssp             HHH-HHHHHEEEEEEEEESCCCS-CCCCHHHHHTTCEEEECC
T ss_pred             HHH-HHHHHHhcCCeEEEEcccC-ccccchhhhcCcEEEEEE
Confidence            453 7888999999999998763 222333444566666543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.72  E-value=1.7e-08  Score=90.90  Aligned_cols=90  Identities=16%  Similarity=0.227  Sum_probs=71.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHh----CCeeeeccCcc---ccccH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRT----VDIVVTATGNK---NVVTR  180 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~----aDvvi~~~~~~---~~i~~  180 (258)
                      -++|+|||+|.||.++++.|+..|.+|++||+++.+.+.+.+.|+.. .++++.+++    +|+|++|+...   .++  
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl--   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLL--   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHH--
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHH--
Confidence            46899999999999999999999999999999998888888888753 467777664    79999996432   233  


Q ss_pred             HHHhcCCCCcEEEecCCCCh
Q psy16115        181 EHMDKMKNGCVVCNMGHSNT  200 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~~~  200 (258)
                      +.+..++++++++|+|....
T Consensus        86 ~~l~~~~~~~iv~Dv~Svk~  105 (341)
T 3ktd_A           86 DAVHTHAPNNGFTDVVSVKT  105 (341)
T ss_dssp             HHHHHHCTTCCEEECCSCSH
T ss_pred             HHHHccCCCCEEEEcCCCCh
Confidence            22333589999999987643

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=98.71  E-value=7.5e-08  Score=85.81  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=84.6

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+| .|.||+.+++.++..|++|+++++++++++.+++.|++.      .++.+.+.      +.|+++.|++.
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            799999999 899999999999999999999999999888888888652      12333332      37999999886


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeee
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~  217 (258)
                       ..+. ..++.++++++++.+|...   .......+..+++++.+.
T Consensus       228 -~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~  271 (334)
T 3qwb_A          228 -DTFE-ISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRP  271 (334)
T ss_dssp             -GGHH-HHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECC
T ss_pred             -HHHH-HHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEE
Confidence             4554 7889999999999999762   234455666777777653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.70  E-value=6e-08  Score=85.76  Aligned_cols=89  Identities=17%  Similarity=0.269  Sum_probs=72.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccccccHHH------
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREH------  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~------  182 (258)
                      .+|+|||+|.||..+++.|...|.+|+++|+++.+.+...+.|... .++++.++++|+|++|+.++..+. +.      
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~-~v~~~~~~  109 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAK-DLVLGPSG  109 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHH-HHHHSTTC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHH-HHHcCchh
Confidence            6899999999999999999999999999999998876666667653 468888899999999986443332 22      


Q ss_pred             -HhcCCCCcEEEecCCCC
Q psy16115        183 -MDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       183 -l~~~k~g~~ivnvg~~~  199 (258)
                       ++.++++.++++++...
T Consensus       110 ~~~~l~~~~~vv~~s~~~  127 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMSTVD  127 (316)
T ss_dssp             GGGGCCTTCEEEECSCCC
T ss_pred             HhhcCCCCCEEEECCCCC
Confidence             25578999999998773

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.70  E-value=1.7e-08  Score=87.87  Aligned_cols=104  Identities=14%  Similarity=0.092  Sum_probs=74.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc---HHHHhcC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT---REHMDKM  186 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~---~~~l~~~  186 (258)
                      ++|+|||+|.||..+++.+.. |.+|+++|+++.+.....+.|....++++.++++|+|++|+..+..+.   .+..+.+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l   80 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL   80 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHHHHHHhhC
Confidence            369999999999999999999 999999999988766554445543336677789999999976543221   2344568


Q ss_pred             CCCcEEEecCCCC---hhhchhhhcCCCcee
Q psy16115        187 KNGCVVCNMGHSN---TEIDVNSLRTPDLTW  214 (258)
Q Consensus       187 k~g~~ivnvg~~~---~~~~~~~l~~~~i~~  214 (258)
                      +++.++++++...   .+.+.+.+....+.+
T Consensus        81 ~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~  111 (289)
T 2cvz_A           81 REGTYWVDATSGEPEASRRLAERLREKGVTY  111 (289)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEEE
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            8999999998773   233344555433333

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.70  E-value=8.1e-08  Score=82.46  Aligned_cols=97  Identities=10%  Similarity=0.120  Sum_probs=74.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc-cCHHHHHHhCCeeeeccCccccccHHHHhcCC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDKMK  187 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k  187 (258)
                      .+|+|||+|.||..+++.+...|..|.++|+++.+.....+ .|+.. .+++++++++|+|++|+. +..+ .+.+..++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-~~v~~~l~   81 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-ETVLKPLH   81 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-HHHHTTSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-HHHHHHhc
Confidence            48999999999999999999999999999999887655443 36553 478888999999999986 4444 36777788


Q ss_pred             CCcEEEecCCC-Chhhchhhhc
Q psy16115        188 NGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       188 ~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      ++.++++...+ +.+...+.+.
T Consensus        82 ~~~~vv~~~~~~~~~~l~~~~~  103 (259)
T 2ahr_A           82 FKQPIISMAAGISLQRLATFVG  103 (259)
T ss_dssp             CCSCEEECCTTCCHHHHHHHHC
T ss_pred             cCCEEEEeCCCCCHHHHHHhcC
Confidence            89999998666 4443333443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.70  E-value=2.2e-08  Score=87.48  Aligned_cols=88  Identities=19%  Similarity=0.252  Sum_probs=71.0

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccc---cccHHHHhc
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKN---VVTREHMDK  185 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~---~i~~~~l~~  185 (258)
                      .+|+|||+ |.||..+++.|...|.+|+++|+++.+.+...+.|+...+..+.++++|+|++|+....   ++ .+....
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~-~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNIIEKVA-EDIVPR   90 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHHHHHHH-HHHGGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchHHHHHH-HHHHHh
Confidence            58999999 99999999999999999999999988776666667665567778889999999964332   33 234455


Q ss_pred             CCCCcEEEecCCC
Q psy16115        186 MKNGCVVCNMGHS  198 (258)
Q Consensus       186 ~k~g~~ivnvg~~  198 (258)
                      ++++.++++++.+
T Consensus        91 l~~~~ivv~~s~~  103 (286)
T 3c24_A           91 VRPGTIVLILDAA  103 (286)
T ss_dssp             SCTTCEEEESCSH
T ss_pred             CCCCCEEEECCCC
Confidence            7889999998776

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.69  E-value=6.9e-08  Score=84.58  Aligned_cols=90  Identities=20%  Similarity=0.293  Sum_probs=72.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccc----ccc--HHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKN----VVT--REH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~----~i~--~~~  182 (258)
                      .+|+|||+|.||..+++.+...|.+|+++|+++.+.....+.|+.. .++++.++++|+|++|+..+.    ++.  .+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            5899999999999999999999999999999998876665556653 478888999999999974433    221  133


Q ss_pred             HhcCCCCcEEEecCCCC
Q psy16115        183 MDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~  199 (258)
                      .+.++++.++++++.+.
T Consensus        85 ~~~l~~~~~vv~~~~~~  101 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVS  101 (301)
T ss_dssp             HHHSCTTCEEEECCCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            45688999999998873

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=98.68  E-value=6.2e-08  Score=91.10  Aligned_cols=107  Identities=11%  Similarity=0.175  Sum_probs=80.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC---Cc---ccCHHHHHH---hCCeeeeccCcc----
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---FS---VVKLNEVIR---TVDIVVTATGNK----  175 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g---~~---~~~l~e~~~---~aDvvi~~~~~~----  175 (258)
                      ..+|+|||+|.||..+|+.|...|.+|+++|+++.+.+...+.+   ..   ..+++++++   ++|+|+++....    
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            35799999999999999999999999999999998876655542   22   357888887   499999996443    


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeee
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEK  216 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~  216 (258)
                      .++ .+....+++|.++||+|...   .....+.+..+.+...+
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd  126 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVG  126 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhcccccc
Confidence            344 36677889999999999883   23334455555454433

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.68  E-value=3.4e-08  Score=86.21  Aligned_cols=89  Identities=16%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHHhCCCc---ccCHHHHHHhCCeeeeccCcc---ccccH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNK---NVVTR  180 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~~~---~~i~~  180 (258)
                      -.+|+|||+|.||..+++.+...  |.+|+++|+++.+...+.+.|..   ..++++.++++|+|++|+...   .++. 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~-   84 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFIK-   84 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHHH-
Confidence            36899999999999999999877  57899999999887666666652   346777888999999996433   2332 


Q ss_pred             HHHhc-CCCCcEEEecCCC
Q psy16115        181 EHMDK-MKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~-~k~g~~ivnvg~~  198 (258)
                      +.... ++++.++++++..
T Consensus        85 ~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           85 ILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             HHHTSCCCTTCEEECCCSC
T ss_pred             HHHhcCCCCCCEEEECCCC
Confidence            44456 8899999998876

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.68  E-value=6.1e-08  Score=84.72  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=69.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccccccH---H---HH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTR---E---HM  183 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~---~---~l  183 (258)
                      +|+|||+|.||..+++.+...|.+|+++|+++.+.+...+.|+.. .+++++++++|+|++|+..+..+..   +   .+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~   81 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGIL   81 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGG
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHH
Confidence            699999999999999999999999999999998877666667654 4788889999999999643322221   1   23


Q ss_pred             hcCCCCcEEEecCCCC
Q psy16115        184 DKMKNGCVVCNMGHSN  199 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~  199 (258)
                      +.++++.++++++..+
T Consensus        82 ~~l~~~~~vv~~s~~~   97 (296)
T 2gf2_A           82 KKVKKGSLLIDSSTID   97 (296)
T ss_dssp             GTCCTTCEEEECSCCC
T ss_pred             hcCCCCCEEEECCCCC
Confidence            4578899999976553

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=98.67  E-value=2.5e-09  Score=94.68  Aligned_cols=88  Identities=16%  Similarity=0.259  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--CHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KLNEVIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--~l~e~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      +|++|+|+|+|.+|+.+++.++.+|++|++++ ++++.+.+++.|++..  +.+++-.+.|+++.|++.... . +.++.
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~~~~-~-~~~~~  218 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQNA-A-ALVPS  218 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC---------TTGGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCchhH-H-HHHHH
Confidence            79999999999999999999999999999999 8888888888887532  212221247999999887655 3 67889


Q ss_pred             CCCCcEEEecCCC
Q psy16115        186 MKNGCVVCNMGHS  198 (258)
Q Consensus       186 ~k~g~~ivnvg~~  198 (258)
                      ++++++++.+|..
T Consensus       219 l~~~G~~v~~g~~  231 (315)
T 3goh_A          219 LKANGHIICIQDR  231 (315)
T ss_dssp             EEEEEEEEEECCC
T ss_pred             hcCCCEEEEEeCC
Confidence            9999999999755

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=98.67  E-value=1.6e-08  Score=91.02  Aligned_cols=108  Identities=21%  Similarity=0.285  Sum_probs=81.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|.|+ |.||+.+++.++..|++|+++++++++.+.+.+.|.+..      +..+.+.      ..|+++.+++.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~  249 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  249 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCCh
Confidence            7899999998 999999999999999999999999988877777776421      2222221      47999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeee
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~  217 (258)
                      . .+. +.++.++++++++.+|.. +.......+..+++++.++
T Consensus       250 ~-~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~i~g~  291 (351)
T 1yb5_A          250 V-NLS-KDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGV  291 (351)
T ss_dssp             H-HHH-HHHHHEEEEEEEEECCCCSCEEECTHHHHTTTCEEEEC
T ss_pred             H-HHH-HHHHhccCCCEEEEEecCCCCccCHHHHHhCCcEEEEE
Confidence            5 343 678899999999999965 3233334455667777665

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.11  E-value=2.6e-09  Score=89.19  Aligned_cols=89  Identities=17%  Similarity=0.213  Sum_probs=67.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHH--HHh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTRE--HMD  184 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~--~l~  184 (258)
                      +.+++|+|||+|.||..+++.|...|.+|+++|+++. .......++...++.+.++++|+|++|+.... +. +  .+.
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~-~~-~v~~l~   93 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVLCYSEAASRSDVIVLAVHREH-YD-FLAELA   93 (201)
Confidence            4678999999999999999999999999999999876 33333345554577788889999999864332 11 1  134


Q ss_pred             cCCCCcEEEecCCC
Q psy16115        185 KMKNGCVVCNMGHS  198 (258)
Q Consensus       185 ~~k~g~~ivnvg~~  198 (258)
                      .++++.++|+++.+
T Consensus        94 ~~~~~~ivI~~~~G  107 (201)
T 2yjz_A           94 DSLKGRVLIDVSNN  107 (201)
Confidence            45678999999998

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.65  E-value=5.4e-08  Score=84.41  Aligned_cols=86  Identities=13%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---ccCHHHHHHhCCeeeeccCcc---ccccHHHHh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNEVIRTVDIVVTATGNK---NVVTREHMD  184 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~~~---~~i~~~~l~  184 (258)
                      +|+|||+|.||..+++.+...|.+|+++|+++.+...+.+.|..   ..+++++ +++|+|++|+...   .++. +...
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~-~l~~   79 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLE-KLIP   79 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHH-HHGG
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHHH-HHHh
Confidence            79999999999999999999999999999999887766666663   3467777 8999999997543   3332 4445


Q ss_pred             cCCCCcEEEecCCC
Q psy16115        185 KMKNGCVVCNMGHS  198 (258)
Q Consensus       185 ~~k~g~~ivnvg~~  198 (258)
                      .++++.++++++..
T Consensus        80 ~~~~~~~vv~~~~~   93 (279)
T 2f1k_A           80 HLSPTAIVTDVASV   93 (279)
T ss_dssp             GSCTTCEEEECCSC
T ss_pred             hCCCCCEEEECCCC
Confidence            68899999999665

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.65  E-value=2.3e-08  Score=86.30  Aligned_cols=95  Identities=12%  Similarity=0.157  Sum_probs=72.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHh-CCCcc-cCHHHHHHhCCeeeeccCccc---cccH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKN---VVTR  180 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~-~g~~~-~~l~e~~~~aDvvi~~~~~~~---~i~~  180 (258)
                      +.+.+|+|||+|.||..+++.+...|.+ |.++|+++.+.+...+ .|+.. .++++.++++|+|++|+....   ++. 
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~-   86 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQ-   86 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHH-
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHHH-
Confidence            3456899999999999999999999998 8999999887655443 36553 467777889999999975442   232 


Q ss_pred             HHHhcCCCCcEEEecCCC-Chhh
Q psy16115        181 EHMDKMKNGCVVCNMGHS-NTEI  202 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~-~~~~  202 (258)
                      +..+.++++.++++++.+ ..+.
T Consensus        87 ~l~~~~~~~~ivv~~s~~~~~~~  109 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAGSIPMNV  109 (266)
T ss_dssp             HHHTTCCTTCEEEECCTTSCGGG
T ss_pred             HHHhhcCCCcEEEECCCCCchHH
Confidence            334567799999999888 4333

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.64  E-value=8e-08  Score=83.85  Aligned_cols=88  Identities=17%  Similarity=0.139  Sum_probs=69.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccH------HH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTR------EH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~------~~  182 (258)
                      .+|+|||+|.||..+++.|...|.+|+++| ++.+.....+.|.. ..++++.++++|+|++|+.....+..      +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            489999999999999999999999999999 88776665555665 34788889999999999755443321      12


Q ss_pred             HhcCCCCcEEEecCCC
Q psy16115        183 MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~  198 (258)
                      .+.++++.++++++.+
T Consensus        83 ~~~l~~~~~vv~~s~~   98 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSI   98 (295)
T ss_dssp             TTSCCTTEEEEECSCC
T ss_pred             hhcCCCCCEEEECCCC
Confidence            2357889999999887

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.63  E-value=9.7e-08  Score=81.67  Aligned_cols=98  Identities=18%  Similarity=0.312  Sum_probs=71.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC----EEEEEeCChhhHHHHH-hCCCcc-cCHHHHHHhCCeeeeccCcccccc---H
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC----VIYITEIDPICALQAC-MDGFSV-VKLNEVIRTVDIVVTATGNKNVVT---R  180 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~----~Vi~~d~~~~~~~~a~-~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~---~  180 (258)
                      ++|+|||+|.||..+++.+...|.    +|+++|+++++.+... +.|+.. .+..+.++++|+|++|+ .+..+.   .
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav-~~~~~~~v~~   81 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSI-KPDLYASIIN   81 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECS-CTTTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEe-CHHHHHHHHH
Confidence            579999999999999999999998    8999999998876554 347654 47889999999999997 232221   1


Q ss_pred             HHHhcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115        181 EHMDKMKNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      +....++++.+++.+..+ +.+.+-+.+.
T Consensus        82 ~l~~~l~~~~~vvs~~~gi~~~~l~~~~~  110 (247)
T 3gt0_A           82 EIKEIIKNDAIIVTIAAGKSIESTENAFN  110 (247)
T ss_dssp             --CCSSCTTCEEEECSCCSCHHHHHHHHC
T ss_pred             HHHhhcCCCCEEEEecCCCCHHHHHHHhC
Confidence            333456788888866655 5444434443

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.63  E-value=6.9e-08  Score=90.76  Aligned_cols=91  Identities=9%  Similarity=0.179  Sum_probs=72.5

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----CCc-ccCHHHHHHh---CCeeeeccCcc---
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFS-VVKLNEVIRT---VDIVVTATGNK---  175 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g~~-~~~l~e~~~~---aDvvi~~~~~~---  175 (258)
                      +..++|+|||+|.||..+|+.|...|.+|+++|+++++.+...+.    |+. ..+++++++.   +|+|+++....   
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            356789999999999999999999999999999999886654443    554 3478888887   99999996442   


Q ss_pred             -ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 -NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 -~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       .+++ +....++++.+|||++.+
T Consensus        93 ~~vl~-~l~~~l~~g~iIId~s~g  115 (480)
T 2zyd_A           93 DAAID-SLKPYLDKGDIIIDGGNT  115 (480)
T ss_dssp             HHHHH-HHGGGCCTTCEEEECSCC
T ss_pred             HHHHH-HHHhhcCCCCEEEECCCC
Confidence             3443 555678899999999998

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.63  E-value=2.7e-07  Score=83.94  Aligned_cols=106  Identities=18%  Similarity=0.203  Sum_probs=83.5

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC----hhh---------HHHHHhCCC--cccCHHHHHHhCCe
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID----PIC---------ALQACMDGF--SVVKLNEVIRTVDI  167 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~----~~~---------~~~a~~~g~--~~~~l~e~~~~aDv  167 (258)
                      +..+.+.+|+|+|+|..|..+++++...|+ +|+++|++    ..|         ...+.+...  ...++++.++++|+
T Consensus       187 g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADV  266 (388)
T 1vl6_A          187 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  266 (388)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCE
Confidence            456899999999999999999999999999 79999998    443         122322221  23479999999999


Q ss_pred             eeeccCccccccHHHHhcCCCCcEEEecCCCChhhchh-hhcCC
Q psy16115        168 VVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN-SLRTP  210 (258)
Q Consensus       168 vi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~-~l~~~  210 (258)
                      +|-+++ +++++++.++.|+++.+++.++.+..|+..+ +.+.|
T Consensus       267 lIG~Sa-p~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~~~g  309 (388)
T 1vl6_A          267 FIGVSR-GNILKPEWIKKMSRKPVIFALANPVPEIDPELAREAG  309 (388)
T ss_dssp             EEECSC-SSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHHTT
T ss_pred             EEEeCC-CCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHHHhc
Confidence            999987 7999999999999999999999984444333 33334

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=98.61  E-value=9e-08  Score=85.03  Aligned_cols=89  Identities=21%  Similarity=0.266  Sum_probs=73.6

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+| .|.||+.+++.++..|++|+++++++++++.+++.|++.      .++.+.+.      ..|+++.|++.
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            799999999 799999999999999999999999999888888877642      12333332      47999999887


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       ..+. +.++.++++++++.+|..
T Consensus       220 -~~~~-~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          220 -DTWL-TSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             -GGHH-HHHTTEEEEEEEEECCCT
T ss_pred             -HHHH-HHHHHhcCCCEEEEEecC
Confidence             4554 789999999999999976

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.60  E-value=1.3e-07  Score=89.33  Aligned_cols=90  Identities=10%  Similarity=0.112  Sum_probs=73.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----CCCc-ccCHHHHHHh---CCeeeeccCcc---
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DGFS-VVKLNEVIRT---VDIVVTATGNK---  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----~g~~-~~~l~e~~~~---aDvvi~~~~~~---  175 (258)
                      -..+|+|||+|.||..+|+.|...|.+|+++|+++++.+...+     .|+. ..+++++++.   +|+|+++....   
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   88 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV   88 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence            3578999999999999999999999999999999988766555     3554 3478888887   99999996543   


Q ss_pred             -ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 -NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 -~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       .++ .+....+++|.+||+++.+
T Consensus        89 ~~vl-~~l~~~l~~g~iIId~s~~  111 (497)
T 2p4q_A           89 DALI-NQIVPLLEKGDIIIDGGNS  111 (497)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCC
T ss_pred             HHHH-HHHHHhCCCCCEEEECCCC
Confidence             344 2556678999999999987

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=98.59  E-value=1.2e-07  Score=85.92  Aligned_cols=89  Identities=18%  Similarity=0.212  Sum_probs=71.8

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHH---hCCeeeeccCcc-c
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIR---TVDIVVTATGNK-N  176 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~---~aDvvi~~~~~~-~  176 (258)
                      +|++|+|+| .|.||+.+++.++..|++|++.+ ++.+.+.+++.|++..      ++.+.+.   ..|+++.|++.. .
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  261 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTE  261 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhh
Confidence            799999999 79999999999999999999888 5677777778887521      2333333   479999998876 3


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+. +.++.++++++++.+|..
T Consensus       262 ~~~-~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          262 TWA-PDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             HHG-GGGBCSSSCCEEEESCCS
T ss_pred             hhH-HHHHhhcCCcEEEEeCCC
Confidence            444 778889999999999976

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=98.58  E-value=1.7e-07  Score=84.94  Aligned_cols=89  Identities=17%  Similarity=0.087  Sum_probs=72.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      .|++|+|+|+ |.+|+.+++.++..|++|++.. ++++.+.+++.|++.      .++.+.++     +.|+++.|++..
T Consensus       164 ~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~  242 (371)
T 3gqv_A          164 KPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV  242 (371)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence            7999999999 8999999999999999988875 788888888888752      13333332     379999999987


Q ss_pred             ccccHHHHhcC-CCCcEEEecCCC
Q psy16115        176 NVVTREHMDKM-KNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~-k~g~~ivnvg~~  198 (258)
                      ..++ ..++.+ +++++++.+|..
T Consensus       243 ~~~~-~~~~~l~~~~G~iv~~g~~  265 (371)
T 3gqv_A          243 ESTT-FCFAAIGRAGGHYVSLNPF  265 (371)
T ss_dssp             HHHH-HHHHHSCTTCEEEEESSCC
T ss_pred             HHHH-HHHHHhhcCCCEEEEEecC
Confidence            7775 788888 699999999853

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=98.58  E-value=9.8e-08  Score=85.31  Aligned_cols=89  Identities=12%  Similarity=0.085  Sum_probs=72.9

Q ss_pred             CCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+|+| .||+.+++.++..|++|+++++++++.+.+++.|++.      .++.+.+.      +.|+++.|++.
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            79999999998 8999999999999999999999999888888877652      12333332      47999999887


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ....  +.++.++++++++.+|..
T Consensus       224 ~~~~--~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          224 PDGN--ELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             HHHH--HHHHTEEEEEEEEECCCT
T ss_pred             hhHH--HHHHHhcCCCEEEEEeec
Confidence            6553  466889999999999975

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.57  E-value=1.4e-08  Score=83.61  Aligned_cols=89  Identities=20%  Similarity=0.299  Sum_probs=69.6

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHH-H-----hCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVI-R-----TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~-~-----~aDvvi~~~~~  174 (258)
                      +|++|+|+| .|.||+.+++.++..|++|+++++++.+.+.+.+.|.+.      .+..+.+ +     ..|+++.+.+.
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  117 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  117 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCch
Confidence            789999999 699999999999999999999999988776666666532      1222222 1     37999998863


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       ..+ .+.++.|+++++++++|..
T Consensus       118 -~~~-~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          118 -EAI-QRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             -HHH-HHHHHTEEEEEEEEECSCG
T ss_pred             -HHH-HHHHHHhccCCEEEEEcCC
Confidence             344 3788999999999999975

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.56  E-value=2.6e-07  Score=82.05  Aligned_cols=88  Identities=14%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-CC-EEEEEeCChhhHHHHH-hCC--Cc-ccCHHHHHHhCCeeeeccCc-cccccH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-GC-VIYITEIDPICALQAC-MDG--FS-VVKLNEVIRTVDIVVTATGN-KNVVTR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~-~Vi~~d~~~~~~~~a~-~~g--~~-~~~l~e~~~~aDvvi~~~~~-~~~i~~  180 (258)
                      .+++++|||+|.+|+.+++.+... |. +|.++|+++++.+... ..+  +. ..+++++++++|+|++|+.. ..++..
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~~~v~~~  213 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPILFG  213 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCSSCCBCG
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCCCcccCH
Confidence            578999999999999999998764 87 7999999998765433 334  43 35788999999999999643 345542


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                         +.+++|..++++|..
T Consensus       214 ---~~l~~g~~vi~~g~~  228 (312)
T 2i99_A          214 ---EWVKPGAHINAVGAS  228 (312)
T ss_dssp             ---GGSCTTCEEEECCCC
T ss_pred             ---HHcCCCcEEEeCCCC
Confidence               578999999999876

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.55  E-value=2.7e-07  Score=80.71  Aligned_cols=100  Identities=16%  Similarity=0.091  Sum_probs=74.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeCChhhHHHHHh-CCCccc-CHHHHHHhCCeeeeccCcccccc---H
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEIDPICALQACM-DGFSVV-KLNEVIRTVDIVVTATGNKNVVT---R  180 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~~~~~~~a~~-~g~~~~-~l~e~~~~aDvvi~~~~~~~~i~---~  180 (258)
                      .++|+|||+|.||..+++.+...|.   +|+++|+++.+.+...+ .|+... +..+.++++|+|++|... ..+.   .
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl~   81 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVCE   81 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHHH
Confidence            4689999999999999999999998   79999999988776555 477654 788889999999999732 2222   1


Q ss_pred             HHHhc-CCCCcEEEecCCC-ChhhchhhhcC
Q psy16115        181 EHMDK-MKNGCVVCNMGHS-NTEIDVNSLRT  209 (258)
Q Consensus       181 ~~l~~-~k~g~~ivnvg~~-~~~~~~~~l~~  209 (258)
                      +.-.. ++++.+++.+..+ ..+.+-+.+..
T Consensus        82 ~l~~~~l~~~~iiiS~~agi~~~~l~~~l~~  112 (280)
T 3tri_A           82 ELKDILSETKILVISLAVGVTTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHTTTCEEEECCTTCCHHHHHHHHTC
T ss_pred             HHHhhccCCCeEEEEecCCCCHHHHHHHcCC
Confidence            22234 6777788877666 55544445543

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.53  E-value=2.8e-07  Score=86.47  Aligned_cols=103  Identities=11%  Similarity=0.154  Sum_probs=76.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----CCc-ccCHHHHHHh---CCeeeeccCccc----c
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GFS-VVKLNEVIRT---VDIVVTATGNKN----V  177 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g~~-~~~l~e~~~~---aDvvi~~~~~~~----~  177 (258)
                      .+|+|||+|.||..+++.+...|.+|.++|+++++.+...+.    |+. ..+++++++.   +|+|++|+....    +
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            579999999999999999999999999999998876654432    554 3578888886   999999975532    3


Q ss_pred             ccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCce
Q psy16115        178 VTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLT  213 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~  213 (258)
                      +. +....+++|.++|+++.+.   .....+.+..+.+.
T Consensus        86 l~-~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           86 IK-SLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             HH-HHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             HH-HHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            32 4456788999999999873   23344555544343

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.53  E-value=3e-07  Score=81.87  Aligned_cols=99  Identities=13%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC----CEEEEEeCChh--hHHHHHhCCCccc-CHHHHHHhCCeeeeccCcccccc-
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPI--CALQACMDGFSVV-KLNEVIRTVDIVVTATGNKNVVT-  179 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d~~~~--~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~~~~~~i~-  179 (258)
                      ...+|+|||+|.||..++..|...|    .+|+++|+++.  +.+...+.|+... +..+.++++|+||+|... ..+. 
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~-~~~~~   99 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKP-HIIPF   99 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCG-GGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCH-HHHHH
Confidence            3457999999999999999999999    68999999985  5554555676644 678889999999999753 3322 


Q ss_pred             --HHHHhcCCCCcEEEecCCC-Chhhchhhh
Q psy16115        180 --REHMDKMKNGCVVCNMGHS-NTEIDVNSL  207 (258)
Q Consensus       180 --~~~l~~~k~g~~ivnvg~~-~~~~~~~~l  207 (258)
                        .+....++++.++|+++.+ +.+.+-+.+
T Consensus       100 vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l  130 (322)
T 2izz_A          100 ILDEIGADIEDRHIVVSCAAGVTISSIEKKL  130 (322)
T ss_dssp             HHHHHGGGCCTTCEEEECCTTCCHHHHHHHH
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHH
Confidence              1233457789999998766 443333334

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=98.50  E-value=3.7e-08  Score=87.56  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=81.2

Q ss_pred             CCC-EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHH----H-----HhCCeeeeccCcc
Q psy16115        108 GGK-QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEV----I-----RTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~-~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~----~-----~~aDvvi~~~~~~  175 (258)
                      +|+ +|+|+|+ |.||+.+++.++..|++|+++++++++++.+++.|++. .+..+.    +     ...|+++.|++..
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~  228 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK  228 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTH
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHH
Confidence            465 8999998 99999999999999999999999988887777777653 232221    1     1369999998874


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeee
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~  217 (258)
                       .+. +.++.++++++++.+|...   .+.....+..+++++.++
T Consensus       229 -~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~  271 (330)
T 1tt7_A          229 -QLA-SLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGI  271 (330)
T ss_dssp             -HHH-HHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEEC
T ss_pred             -HHH-HHHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEE
Confidence             554 7899999999999998752   223333455667777765

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=98.49  E-value=4e-08  Score=87.54  Aligned_cols=108  Identities=21%  Similarity=0.257  Sum_probs=80.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|.|. |.||+.+++.++..|++|+++++++++.+.+.+.|.+.      .+..+.+.      ..|+++.+++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~  224 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGK  224 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcH
Confidence            7899999995 99999999999999999999999988877766666542      12222221      47999999887


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC---hhhchh-hhcCCC--ceeeee
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN---TEIDVN-SLRTPD--LTWEKV  217 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~-~l~~~~--i~~~~~  217 (258)
                       ..+. +.++.++++++++.+|...   ...... .+..++  +++.++
T Consensus       225 -~~~~-~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~  271 (333)
T 1wly_A          225 -DTLQ-KSLDCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPA  271 (333)
T ss_dssp             -TTHH-HHHHTEEEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCC
T ss_pred             -HHHH-HHHHhhccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEe
Confidence             4554 7899999999999998752   223334 455566  666654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.49  E-value=3.9e-07  Score=78.29  Aligned_cols=85  Identities=16%  Similarity=0.254  Sum_probs=65.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeC--ChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccccc--HHHHhcC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEI--DPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVT--REHMDKM  186 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~--~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~--~~~l~~~  186 (258)
                      +|+|||+|.||..+++.|...|.+|+++|+  ++.+.+...+.|+. .+++++++++|+|++|+.......  .+..+.+
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~   80 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhc
Confidence            799999999999999999999999999988  55555444445666 778888999999999964443221  2344556


Q ss_pred             CCCcEEEecCCC
Q psy16115        187 KNGCVVCNMGHS  198 (258)
Q Consensus       187 k~g~~ivnvg~~  198 (258)
                      ++  ++++++..
T Consensus        81 ~~--~vi~~s~~   90 (264)
T 1i36_A           81 RG--IYVDINNI   90 (264)
T ss_dssp             CS--EEEECSCC
T ss_pred             Cc--EEEEccCC
Confidence            66  89998766

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=98.48  E-value=2.4e-07  Score=81.60  Aligned_cols=78  Identities=14%  Similarity=0.307  Sum_probs=63.0

Q ss_pred             CCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHHHh
Q psy16115        109 GKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHMD  184 (258)
Q Consensus       109 g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~l~  184 (258)
                      .++|+||| +|.||..+++.++..|.+|+++|+++..            +..+.++++|+|++|+...   .++. +...
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------~~~~~~~~aDvVilavp~~~~~~vl~-~l~~   87 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------VAESILANADVVIVSVPINLTLETIE-RLKP   87 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------GHHHHHTTCSEEEECSCGGGHHHHHH-HHGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------CHHHHhcCCCEEEEeCCHHHHHHHHH-HHHh
Confidence            46899999 9999999999999999999999987642            4667788999999996433   3342 4445


Q ss_pred             cCCCCcEEEecCCCC
Q psy16115        185 KMKNGCVVCNMGHSN  199 (258)
Q Consensus       185 ~~k~g~~ivnvg~~~  199 (258)
                      .+++++++++++...
T Consensus        88 ~l~~~~iv~~~~svk  102 (298)
T 2pv7_A           88 YLTENMLLADLTSVK  102 (298)
T ss_dssp             GCCTTSEEEECCSCC
T ss_pred             hcCCCcEEEECCCCC
Confidence            688999999998763

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=98.48  E-value=1.1e-07  Score=86.58  Aligned_cols=78  Identities=15%  Similarity=0.053  Sum_probs=62.6

Q ss_pred             CCCEEEEE--cCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccC
Q psy16115        108 GGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~Ii--G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~  173 (258)
                      +|++|+|+  |.|.+|+.+++.++..|++|+++++++++.+.+++.|++..      ++.+.+.      +.|+++.|++
T Consensus       170 ~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v~d~~g  249 (379)
T 3iup_A          170 EGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATG  249 (379)
T ss_dssp             TTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHTTCSCEEETTSTTHHHHHHHHHHHHCCCEEEESCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCcEEEeCCChHHHHHHHHHhcCCCceEEEECCC
Confidence            78999999  89999999999999999999999999999888888887521      2333322      4899999998


Q ss_pred             ccccccHHHHhcC
Q psy16115        174 NKNVVTREHMDKM  186 (258)
Q Consensus       174 ~~~~i~~~~l~~~  186 (258)
                      ....++ ..++.+
T Consensus       250 ~~~~~~-~~~~~l  261 (379)
T 3iup_A          250 GGKLGG-QILTCM  261 (379)
T ss_dssp             EESHHH-HHHHHH
T ss_pred             chhhHH-HHHHhc
Confidence            776664 555555

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=98.47  E-value=3.5e-08  Score=87.70  Aligned_cols=108  Identities=18%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             CCC-EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CH-HHHHH-----hCCeeeeccCcc
Q psy16115        108 GGK-QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KL-NEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~-~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l-~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|+ +|+|+|+ |.||+.+++.++..|++|+++++++++.+.+++.|++..    +. .+.++     ..|+++.+++..
T Consensus       148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~  227 (328)
T 1xa0_A          148 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR  227 (328)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT
T ss_pred             CCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHH
Confidence            464 8999998 999999999999999999999999888888888887521    11 12221     369999998874


Q ss_pred             ccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeee
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~  217 (258)
                       .+. +.++.++++++++.+|...   .+.....+..+++++.++
T Consensus       228 -~~~-~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~  270 (328)
T 1xa0_A          228 -TLA-TVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  270 (328)
T ss_dssp             -THH-HHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             -HHH-HHHHhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEE
Confidence             554 7899999999999998752   222333444566777765

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=98.47  E-value=3.5e-07  Score=82.32  Aligned_cols=108  Identities=17%  Similarity=0.104  Sum_probs=76.5

Q ss_pred             CC-CEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhh----HHHHHhCCCcc-cC--------HHHHHH--------h
Q psy16115        108 GG-KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC----ALQACMDGFSV-VK--------LNEVIR--------T  164 (258)
Q Consensus       108 ~g-~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~----~~~a~~~g~~~-~~--------l~e~~~--------~  164 (258)
                      +| ++|+|+|+ |.||+.+++.++.+|++|+++..++.+    ...+++.|++. .+        +.+.+.        +
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g  245 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  245 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC
Confidence            68 99999998 999999999999999998887655543    34456677642 22        112221        4


Q ss_pred             CCeeeeccCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        165 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       165 aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      .|+++.|++.....  +.++.++++++++.+|..   +.......+..+++++.+.
T Consensus       246 ~Dvvid~~G~~~~~--~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~  299 (364)
T 1gu7_A          246 AKLALNCVGGKSST--GIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGF  299 (364)
T ss_dssp             EEEEEESSCHHHHH--HHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEEC
T ss_pred             ceEEEECCCchhHH--HHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEE
Confidence            79999999876654  578999999999999864   2223333444466666654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.47  E-value=8.1e-07  Score=78.38  Aligned_cols=91  Identities=15%  Similarity=0.239  Sum_probs=69.0

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHhCCC---ccc---CHHHHHHhCCeeeeccCccc
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDGF---SVV---KLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~~g~---~~~---~l~e~~~~aDvvi~~~~~~~  176 (258)
                      .++.|++++|+|+|.+|+.++..|...|+ +|++++|++++.+. +.+.+.   ...   ++.+.+.++|+||.|++...
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            45789999999999999999999999998 89999999887543 333333   222   34455678999999974332


Q ss_pred             -------cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 -------VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 -------~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                             .++   .+.++++.+++|+...
T Consensus       217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          217 HPRVEVQPLS---LERLRPGVIVSDIIYN  242 (297)
T ss_dssp             SSCCSCCSSC---CTTCCTTCEEEECCCS
T ss_pred             CCCCCCCCCC---HHHcCCCCEEEEcCCC
Confidence                   122   3457899999999876

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=98.46  E-value=2.3e-07  Score=82.61  Aligned_cols=110  Identities=17%  Similarity=0.177  Sum_probs=83.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHH-HhCCCcc------cCHHHHHH-----hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSV------VKLNEVIR-----TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-~~~g~~~------~~l~e~~~-----~aDvvi~~~~~  174 (258)
                      +|++|+|+|+ |.||+.+++.++..|++|+++++++++.+.+ .+.|++.      .++.+.+.     +.|+++.+++.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            7999999999 9999999999999999999999999888777 6777642      12333332     37999999886


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCC---------hhhchhhhcCCCceeeeecc
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSN---------TEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~---------~~~~~~~l~~~~i~~~~~~~  219 (258)
                      . .+ ...++.++++++++.+|...         .......+..+++++.++..
T Consensus       229 ~-~~-~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~  280 (336)
T 4b7c_A          229 E-IL-DTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVV  280 (336)
T ss_dssp             H-HH-HHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCG
T ss_pred             c-hH-HHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEh
Confidence            3 45 37889999999999998752         12233345556777776543

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=98.46  E-value=1.7e-08  Score=89.49  Aligned_cols=107  Identities=20%  Similarity=0.211  Sum_probs=80.5

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHH--H-----HhCCeeeeccCcccccc
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEV--I-----RTVDIVVTATGNKNVVT  179 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~--~-----~~aDvvi~~~~~~~~i~  179 (258)
                      |+ |+|+|+ |.+|+.+++.++..|++|+++++++++.+.+++.|++. .+..+.  +     ...|+++.|++.. .+.
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~  225 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDK-VLA  225 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCHH-HHH
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCcH-HHH
Confidence            45 999998 99999999999999999999999999988888888753 221110  1     1469999998765 554


Q ss_pred             HHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCceeeeec
Q psy16115        180 REHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~~~~~~  218 (258)
                       +.++.++++++++.+|...   .+.....+..+++++.++.
T Consensus       226 -~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~  266 (324)
T 3nx4_A          226 -KVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVD  266 (324)
T ss_dssp             -HHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECC
T ss_pred             -HHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEe
Confidence             7899999999999999762   2233334445567776653

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.45  E-value=2.1e-07  Score=79.88  Aligned_cols=95  Identities=17%  Similarity=0.197  Sum_probs=69.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHh-CCCcc-cCHHHHHHhCCeeeeccCccccccHHHHhcCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACM-DGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDKMK  187 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~-~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k  187 (258)
                      +|+|||+|.||..++..|...| .+|+++|+++++.+...+ .|+.. .+.++.+ ++|+|++|+. +..+. +.++.++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~-~v~~~l~   78 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDME-AACKNIR   78 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHH-HHHTTCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHH-HHHHHhc
Confidence            7999999999999999999999 899999999887665444 46654 3566667 8999999976 44342 5555554


Q ss_pred             C-CcEEEecCCC-Chhhchhhhc
Q psy16115        188 N-GCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       188 ~-g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      + +.++++++.+ +.+.+.+.+.
T Consensus        79 ~~~~ivv~~~~g~~~~~l~~~~~  101 (263)
T 1yqg_A           79 TNGALVLSVAAGLSVGTLSRYLG  101 (263)
T ss_dssp             CTTCEEEECCTTCCHHHHHHHTT
T ss_pred             cCCCEEEEecCCCCHHHHHHHcC
Confidence            2 8899998666 5443334443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.44  E-value=5.6e-07  Score=84.55  Aligned_cols=88  Identities=13%  Similarity=0.159  Sum_probs=70.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----CCCc-ccCHHHHHH---hCCeeeeccCcc----c
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DGFS-VVKLNEVIR---TVDIVVTATGNK----N  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----~g~~-~~~l~e~~~---~aDvvi~~~~~~----~  176 (258)
                      .+|+|||+|.||..+|..|...|.+|.++|+++++.+...+     .++. ..+++++++   .+|+|++|+.+.    .
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            36999999999999999999999999999999988766555     4554 357888875   899999996543    2


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++. +....++++.+||+++.+
T Consensus        83 vl~-~l~~~l~~g~iII~~s~~  103 (482)
T 2pgd_A           83 FIE-KLVPLLDIGDIIIDGGNS  103 (482)
T ss_dssp             HHH-HHHHHCCTTCEEEECSCC
T ss_pred             HHH-HHHhhcCCCCEEEECCCC
Confidence            342 455678899999999887

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=98.43  E-value=3.5e-07  Score=82.32  Aligned_cols=108  Identities=18%  Similarity=0.179  Sum_probs=75.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEE-eCChh---hHHHHHhCCCcc-cCHH--------HHHH---hCCeeee
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYIT-EIDPI---CALQACMDGFSV-VKLN--------EVIR---TVDIVVT  170 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~-d~~~~---~~~~a~~~g~~~-~~l~--------e~~~---~aDvvi~  170 (258)
                      +|++|+|+|+ |.+|+.+++.++.+|+++++. +.++.   +.+.+++.|++. .+..        +...   +.|+++.
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid  246 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALN  246 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEE
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEE
Confidence            7999999998 999999999999999986654 44332   345567788753 2221        1121   3799999


Q ss_pred             ccCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        171 ATGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       171 ~~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      |++.... . +.++.++++++++.+|..   +.......+..+++++.++
T Consensus       247 ~~g~~~~-~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~  294 (357)
T 1zsy_A          247 CVGGKSS-T-ELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGF  294 (357)
T ss_dssp             SSCHHHH-H-HHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEEC
T ss_pred             CCCcHHH-H-HHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEE
Confidence            9886654 2 578999999999999743   2223333444466776665

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.42  E-value=9.5e-07  Score=77.67  Aligned_cols=94  Identities=16%  Similarity=0.158  Sum_probs=65.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-----------hCCC------------------c-ccCHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-----------MDGF------------------S-VVKLN  159 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-----------~~g~------------------~-~~~l~  159 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|+++++.+.+.           +.|.                  . ..+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            6899999999999999999999999999999987765431           1221                  1 23566


Q ss_pred             HHHHhCCeeeeccCccc----cccHHHHhcCCCCcEEEecCCC-Chhhc
Q psy16115        160 EVIRTVDIVVTATGNKN----VVTREHMDKMKNGCVVCNMGHS-NTEID  203 (258)
Q Consensus       160 e~~~~aDvvi~~~~~~~----~i~~~~l~~~k~g~~ivnvg~~-~~~~~  203 (258)
                      +.++++|+||+|.....    .+-.+..+.++++++++....+ +....
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l  144 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSI  144 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHH
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHH
Confidence            77889999999964322    1222333457888888754444 44433

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.41  E-value=7.2e-07  Score=66.46  Aligned_cols=89  Identities=13%  Similarity=0.112  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCcc--------cCHHHHHHhCCeeeeccCccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSV--------VKLNEVIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~--------~~l~e~~~~aDvvi~~~~~~~~i  178 (258)
                      .+++|+|+|+|.||+.+++.|...| .+|+++|+++.+.......+...        .++.+.++++|+|+.+++.... 
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~-   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT-   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH-
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh-
Confidence            4679999999999999999999999 78999999998876655445432        1244556789999999753321 


Q ss_pred             cHHHHhc-CCCCcEEEecCCC
Q psy16115        179 TREHMDK-MKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~-~k~g~~ivnvg~~  198 (258)
                       ....+. .+.|...++++..
T Consensus        83 -~~~~~~~~~~g~~~~~~~~~  102 (118)
T 3ic5_A           83 -PIIAKAAKAAGAHYFDLTED  102 (118)
T ss_dssp             -HHHHHHHHHTTCEEECCCSC
T ss_pred             -HHHHHHHHHhCCCEEEecCc
Confidence             223322 3567777777643

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.39  E-value=9.1e-07  Score=83.05  Aligned_cols=102  Identities=9%  Similarity=0.148  Sum_probs=74.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CC-------Cc-ccCHHHHHHh---CCeeeeccCcc---
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG-------FS-VVKLNEVIRT---VDIVVTATGNK---  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g-------~~-~~~l~e~~~~---aDvvi~~~~~~---  175 (258)
                      +|+|||+|.||..+|..|...|.+|.++|+++++.+...+ .|       .. ..+++++++.   +|+|++|+...   
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v   82 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT   82 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHHH
Confidence            6999999999999999999999999999999887655443 24       32 3478888875   99999996553   


Q ss_pred             -ccccHHHHhcCCCCcEEEecCCCC---hhhchhhhcCCCce
Q psy16115        176 -NVVTREHMDKMKNGCVVCNMGHSN---TEIDVNSLRTPDLT  213 (258)
Q Consensus       176 -~~i~~~~l~~~k~g~~ivnvg~~~---~~~~~~~l~~~~i~  213 (258)
                       .++ .+....++++.++|+++.+.   .....+.+..+.+.
T Consensus        83 ~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           83 DSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             HHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             HHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence             233 24456788999999998873   23344555543333

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.37  E-value=1e-06  Score=69.85  Aligned_cols=92  Identities=15%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCccc-----CHH---HH-HHhCCeeeeccCccc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVV-----KLN---EV-IRTVDIVVTATGNKN  176 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~-----~l~---e~-~~~aDvvi~~~~~~~  176 (258)
                      ..+++|+|+|+|.+|+.+++.|+..|.+|+++|+++.+...+. ..|....     +.+   +. +.++|+|+.+++...
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~   96 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS   96 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence            5789999999999999999999999999999999998765554 4554321     222   22 457899999987654


Q ss_pred             ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...  ....+.+.+...++-...+
T Consensus        97 ~~~~~~~~~~~~~~~~~iv~~~~~  120 (155)
T 2g1u_A           97 TNFFISMNARYMFNVENVIARVYD  120 (155)
T ss_dssp             HHHHHHHHHHHTSCCSEEEEECSS
T ss_pred             HHHHHHHHHHHHCCCCeEEEEECC
Confidence            321  1233334444455544443

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.37  E-value=1.2e-06  Score=81.94  Aligned_cols=89  Identities=12%  Similarity=0.211  Sum_probs=67.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHHh-------------------CCCcc-cCHHHHHHhCCe
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACM-------------------DGFSV-VKLNEVIRTVDI  167 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~-------------------~g~~~-~~l~e~~~~aDv  167 (258)
                      .+|+|||+|.||..+|..|...  |.+|+++|+++.+.+...+                   .+... .++.+.++++|+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999988  7899999999887654221                   12332 467788899999


Q ss_pred             eeeccCcccccc-----------------HHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKNVVT-----------------REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~~i~-----------------~~~l~~~k~g~~ivnvg~~  198 (258)
                      |++|..++.-.+                 .+..+.++++.++|+.+..
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  133 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTV  133 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcC
Confidence            999965543211                 1344568999999998765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.37  E-value=1.1e-06  Score=81.50  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC------------------CCc-ccCHHHHHHhCCe
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD------------------GFS-VVKLNEVIRTVDI  167 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~------------------g~~-~~~l~e~~~~aDv  167 (258)
                      ..-.+|+|||+|.||..+|..+.. |.+|+++|+++.+.+...+.                  +.. ..++++.++++|+
T Consensus        34 ~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDv  112 (432)
T 3pid_A           34 SEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADY  112 (432)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSE
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCE
Confidence            344699999999999999999987 99999999999876544331                  222 2367888999999


Q ss_pred             eeeccCccc----------ccc---HHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKN----------VVT---REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~----------~i~---~~~l~~~k~g~~ivnvg~~  198 (258)
                      |++|+.++.          .+.   ....+ ++++.++|+.+.-
T Consensus       113 ViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv  155 (432)
T 3pid_A          113 VIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTI  155 (432)
T ss_dssp             EEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCC
T ss_pred             EEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCC
Confidence            999975541          111   23445 8999999998865

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.35  E-value=1.2e-06  Score=76.06  Aligned_cols=92  Identities=18%  Similarity=0.283  Sum_probs=67.3

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-HhCC----CcccCHHHHH-HhCCeeeeccCcccc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDG----FSVVKLNEVI-RTVDIVVTATGNKNV  177 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-~~~g----~~~~~l~e~~-~~aDvvi~~~~~~~~  177 (258)
                      +.++.|++++|+|+|.+|+.+++.|...|++|++++|++++.+.. .+.+    ....+++++. .++|+|+.+++....
T Consensus       114 ~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~  193 (271)
T 1nyt_A          114 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS  193 (271)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC
Confidence            446789999999999999999999999999999999998775432 2222    1222333332 479999999764432


Q ss_pred             -----ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 -----VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 -----i~~~~l~~~k~g~~ivnvg~~  198 (258)
                           +..   ..++++.+++|+...
T Consensus       194 ~~~~~i~~---~~l~~~~~v~D~~y~  216 (271)
T 1nyt_A          194 GDIPAIPS---SLIHPGIYCYDMFYQ  216 (271)
T ss_dssp             TCCCCCCG---GGCCTTCEEEESCCC
T ss_pred             CCCCCCCH---HHcCCCCEEEEeccC
Confidence                 332   236889999999876

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.34  E-value=1.6e-06  Score=80.89  Aligned_cols=89  Identities=18%  Similarity=0.224  Sum_probs=68.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------------------C-Cc-ccCHHHHHHhCCee
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------------------G-FS-VVKLNEVIRTVDIV  168 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------------------g-~~-~~~l~e~~~~aDvv  168 (258)
                      .+|+|||+|.||..+|..|...|.+|+++|+++.+.+...+.                   + .. ..++++.++++|+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            489999999999999999999999999999999876544331                   1 12 23677888899999


Q ss_pred             eeccCccc---------ccc---HHHHhcCCCCcEEEecCCC
Q psy16115        169 VTATGNKN---------VVT---REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       169 i~~~~~~~---------~i~---~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++|..++.         .+.   .+..+.++++.++|+.+.-
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv  124 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTV  124 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             EEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeC
Confidence            99976652         121   2345568999999998854

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.34  E-value=6.7e-07  Score=72.64  Aligned_cols=93  Identities=20%  Similarity=0.282  Sum_probs=65.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHhCCCccc-----C---HHHH--HHhCCeeeeccCc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACMDGFSVV-----K---LNEV--IRTVDIVVTATGN  174 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~~g~~~~-----~---l~e~--~~~aDvvi~~~~~  174 (258)
                      ++.+++|+|+|+|.+|+.+++.|+.. |.+|+++|+++.+...+.+.|....     +   +.++  +.++|+|+.+++.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~  115 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH  115 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence            35688999999999999999999999 9999999999988777666776422     2   2222  4568999998765


Q ss_pred             ccccc--HHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      .....  ...++.+.+...++.....
T Consensus       116 ~~~~~~~~~~~~~~~~~~~ii~~~~~  141 (183)
T 3c85_A          116 HQGNQTALEQLQRRNYKGQIAAIAEY  141 (183)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEEESS
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEEECC
Confidence            43211  1344555656666654443

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.33  E-value=3.3e-07  Score=76.61  Aligned_cols=75  Identities=16%  Similarity=0.291  Sum_probs=55.6

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHH
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTRE  181 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~  181 (258)
                      .++.+.+|+|||+|.||..+++.|...|.+|+++|++++                 .++++|+|++|....   .++. +
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------~~~~aD~vi~av~~~~~~~v~~-~   76 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------ATTLGEIVIMAVPYPALAALAK-Q   76 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------CSSCCSEEEECSCHHHHHHHHH-H
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------HhccCCEEEEcCCcHHHHHHHH-H
Confidence            456889999999999999999999999999999998764                 345789999997532   2222 2


Q ss_pred             HHhcCCCCcEEEecCCC
Q psy16115        182 HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~  198 (258)
                      ..+.++ +.++++++.+
T Consensus        77 l~~~~~-~~~vi~~~~g   92 (209)
T 2raf_A           77 YATQLK-GKIVVDITNP   92 (209)
T ss_dssp             THHHHT-TSEEEECCCC
T ss_pred             HHHhcC-CCEEEEECCC
Confidence            233456 8999999886

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.32  E-value=1.2e-06  Score=78.01  Aligned_cols=129  Identities=16%  Similarity=0.190  Sum_probs=82.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-----c----------ccCHHHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-----S----------VVKLNEV  161 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-----~----------~~~l~e~  161 (258)
                      .-.+|+|||+|.||..+|..+...|.+|+++|++++.+..+.+           .|.     .          ..++++.
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            3478999999999999999999999999999999876543321           111     0          1356778


Q ss_pred             HHhCCeeeeccCccccccH----HHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCce
Q psy16115        162 IRTVDIVVTATGNKNVVTR----EHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTV  236 (258)
Q Consensus       162 ~~~aDvvi~~~~~~~~i~~----~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~  236 (258)
                      ++++|+|++|.--.--+..    +.=+.++++++|. |+|.-+...+.+.+...+ ++.+.|     |..|...+   +.
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~-r~ig~H-----ffNP~~~m---~L  155 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVK-QCIVAH-----PVNPPYYI---PL  155 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGG-GEEEEE-----ECSSTTTC---CE
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCC-cEEEec-----CCCCcccc---ch
Confidence            8899999999532222222    3334578899884 554436655555554322 334443     33333333   56


Q ss_pred             eEEecCCCh
Q psy16115        237 IDLFRKPKS  245 (258)
Q Consensus       237 ~~l~~~~~~  245 (258)
                      +.+|.+++.
T Consensus       156 VEiv~g~~T  164 (319)
T 3ado_A          156 VELVPHPET  164 (319)
T ss_dssp             EEEEECTTC
T ss_pred             HHhcCCCCC
Confidence            777777764

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.32  E-value=1.3e-06  Score=78.08  Aligned_cols=85  Identities=12%  Similarity=0.150  Sum_probs=65.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-CC---------------cccCHHHHHHhCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GF---------------SVVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-g~---------------~~~~l~e~~~~aDvvi~~~~  173 (258)
                      .+|+|||+|.||..++..|...|.+|+++|+++.+.....+. +.               ...++++.++.+|+|++|+.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            589999999999999999999999999999998876554433 21               12367788889999999975


Q ss_pred             ccc---cccHHHHhcCCCCcEEEec
Q psy16115        174 NKN---VVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       174 ~~~---~i~~~~l~~~k~g~~ivnv  195 (258)
                      +..   ++ .+....++++.++++.
T Consensus        85 ~~~~~~~~-~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           85 AIHHASIA-ANIASYISEGQLIILN  108 (359)
T ss_dssp             GGGHHHHH-HHHGGGCCTTCEEEES
T ss_pred             chHHHHHH-HHHHHhCCCCCEEEEc
Confidence            443   33 2344567889988887

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.32  E-value=1.2e-06  Score=77.57  Aligned_cols=86  Identities=13%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeC--ChhhHHHHHhCCC-----------ccc---CHHHHHHhCCeeeeccCc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEI--DPICALQACMDGF-----------SVV---KLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~--~~~~~~~a~~~g~-----------~~~---~l~e~~~~aDvvi~~~~~  174 (258)
                      +|+|||+|.||..+|..|...|.+|+++|+  ++.+.+...+.+.           ...   ++.+.++++|+|++|+..
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST   81 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCCh
Confidence            799999999999999999999999999999  8877665555442           222   566778899999999755


Q ss_pred             cc---cccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KN---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..   ++ .+... ++++.+++++..+
T Consensus        82 ~~~~~v~-~~i~~-l~~~~~vv~~~ng  106 (335)
T 1txg_A           82 DGVLPVM-SRILP-YLKDQYIVLISKG  106 (335)
T ss_dssp             GGHHHHH-HHHTT-TCCSCEEEECCCS
T ss_pred             HHHHHHH-HHHhc-CCCCCEEEEEcCc
Confidence            43   22 13334 7788999988644

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.31  E-value=8.4e-07  Score=73.60  Aligned_cols=86  Identities=20%  Similarity=0.207  Sum_probs=63.9

Q ss_pred             EEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-C-------CcccCHHHHHHhCCeeeeccCccc---cc
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-G-------FSVVKLNEVIRTVDIVVTATGNKN---VV  178 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-g-------~~~~~l~e~~~~aDvvi~~~~~~~---~i  178 (258)
                      +|+|+| +|.||..+++.|...|.+|+++|+++++.....+. +       ....++++.++++|+|+.|+....   ++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~~~~~~   81 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTA   81 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhhHHHHH
Confidence            699999 99999999999999999999999998765433221 2       333467788899999999975332   22


Q ss_pred             cHHHHhcCCCCcEEEecCCC
Q psy16115        179 TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . +..+.+ ++.++++++.+
T Consensus        82 ~-~l~~~~-~~~~vi~~~~g   99 (212)
T 1jay_A           82 R-DLKNIL-REKIVVSPLVP   99 (212)
T ss_dssp             H-HTHHHH-TTSEEEECCCC
T ss_pred             H-HHHHHc-CCCEEEEcCCC
Confidence            1 222234 48899999987

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.31  E-value=7.2e-07  Score=78.06  Aligned_cols=88  Identities=14%  Similarity=0.179  Sum_probs=64.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-------------cCHHHHHH---hCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-------------VKLNEVIR---TVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-------------~~l~e~~~---~aDvvi~~~~  173 (258)
                      .+|+|||+|.||..++..|...|.+|+++|+++++.+...+.|...             .+.++..+   ++|+|++|+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            4899999999999999999999999999999988766554445321             13334444   8999999975


Q ss_pred             ccc---cccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NKN---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...   ++ .+....++++.+++++..+
T Consensus        84 ~~~~~~v~-~~l~~~l~~~~~iv~~~~g  110 (316)
T 2ew2_A           84 AQQLDAMF-KAIQPMITEKTYVLCLLNG  110 (316)
T ss_dssp             HHHHHHHH-HHHGGGCCTTCEEEECCSS
T ss_pred             cccHHHHH-HHHHHhcCCCCEEEEecCC
Confidence            432   22 1333457889999998766

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.31  E-value=3.9e-06  Score=74.57  Aligned_cols=87  Identities=21%  Similarity=0.253  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHh----CCCc--ccCHHHHHHhCCeeeeccCcc-ccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACM----DGFS--VVKLNEVIRTVDIVVTATGNK-NVV  178 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~----~g~~--~~~l~e~~~~aDvvi~~~~~~-~~i  178 (258)
                      ..++++|||+|.+|+..++.++. ++. +|.++|++ .....+.+    .|..  ..++++.++++|+|++|+... .++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~pvl  198 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTPLF  198 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSCSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCccc
Confidence            46899999999999999999976 454 79999999 33222222    2442  238999999999999997544 345


Q ss_pred             cHHHHhcCCCCcEEEecCCC
Q psy16115        179 TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .   -+++++|..++++|..
T Consensus       199 ~---~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          199 A---GQALRAGAFVGAIGSS  215 (313)
T ss_dssp             C---GGGCCTTCEEEECCCS
T ss_pred             C---HHHcCCCcEEEECCCC
Confidence            4   2468999999999986

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.30  E-value=2.3e-06  Score=79.71  Aligned_cols=90  Identities=20%  Similarity=0.270  Sum_probs=69.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------------------C-Cc-ccCHHHHHHhCCe
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------------------G-FS-VVKLNEVIRTVDI  167 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------------------g-~~-~~~l~e~~~~aDv  167 (258)
                      .-+++|||+|.+|..+|..|...|.+|+++|+++++.+...+.                   + .. ..++.+.+++||+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            3589999999999999999999999999999999886543331                   1 22 2467788999999


Q ss_pred             eeeccCccc----------ccc---HHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKN----------VVT---REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~----------~i~---~~~l~~~k~g~~ivnvg~~  198 (258)
                      +|+|.+++.          .+.   ....+.++++.++|+.+.-
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            999965552          121   2345678999999998854

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.29  E-value=2.1e-06  Score=79.48  Aligned_cols=88  Identities=16%  Similarity=0.234  Sum_probs=66.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------------------CC-Cc-ccCHHHHHHhCCeee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVDIVV  169 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------------------~g-~~-~~~l~e~~~~aDvvi  169 (258)
                      +|+|||+|.||..+|..|...|.+|+++|+++.+.+...+                   .| .. ..++++.++++|+|+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvvi   81 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEE
Confidence            7999999999999999999999999999999887655433                   22 22 235777889999999


Q ss_pred             eccCcccc---------cc---HHHHhcCCC---CcEEEecCCC
Q psy16115        170 TATGNKNV---------VT---REHMDKMKN---GCVVCNMGHS  198 (258)
Q Consensus       170 ~~~~~~~~---------i~---~~~l~~~k~---g~~ivnvg~~  198 (258)
                      +|..++.-         +.   .+..+.+++   +.++|+.+..
T Consensus        82 iaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv  125 (436)
T 1mv8_A           82 ICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTV  125 (436)
T ss_dssp             ECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCC
T ss_pred             EEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCc
Confidence            99765542         22   123345788   8999988654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.29  E-value=9.9e-07  Score=82.92  Aligned_cols=97  Identities=14%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-------------c-ccCHHHHHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------S-VVKLNEVIR  163 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~-~~~l~e~~~  163 (258)
                      -++|+|||+|.||..+|..+...|.+|+++|+++++.+.+.+           .|.             . ..+++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            368999999999999999999999999999999988765432           232             1 12343 578


Q ss_pred             hCCeeeeccCcc-----ccccHHHHhcCCCCcEE-EecCCCChhhchhhh
Q psy16115        164 TVDIVVTATGNK-----NVVTREHMDKMKNGCVV-CNMGHSNTEIDVNSL  207 (258)
Q Consensus       164 ~aDvvi~~~~~~-----~~i~~~~l~~~k~g~~i-vnvg~~~~~~~~~~l  207 (258)
                      ++|+||+|....     .++ ++..+.+++++++ .|++.-+.......+
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~-~~l~~~~~~~~IlasntSti~i~~ia~~~  132 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALF-AQLAEVCPPQTLLTTNTSSISITAIAAEI  132 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHH-HHHHHHSCTTCEEEECCSSSCHHHHTTTS
T ss_pred             CCCEEEEcCCCcHHHHHHHH-HHHHHhhccCcEEEecCCCCCHHHHHHHc
Confidence            999999996433     233 3455668999998 566655554433444

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=98.29  E-value=9.6e-07  Score=80.45  Aligned_cols=109  Identities=18%  Similarity=0.220  Sum_probs=83.2

Q ss_pred             CcCcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh-------hhHH-----HHHhCC--CcccCHHHHHHhCC
Q psy16115        102 STDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-------ICAL-----QACMDG--FSVVKLNEVIRTVD  166 (258)
Q Consensus       102 ~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~-------~~~~-----~a~~~g--~~~~~l~e~~~~aD  166 (258)
                      ..+..+...+|+|+|+|..|..+++++...|+ +|+++|++.       .++.     .+....  ....++++.++++|
T Consensus       181 l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~AD  260 (398)
T 2a9f_A          181 LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGAD  260 (398)
T ss_dssp             TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTC
T ss_pred             HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCC
Confidence            44567889999999999999999999999999 899999873       1111     111111  11346899999999


Q ss_pred             eeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchh-hhcCCC
Q psy16115        167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVN-SLRTPD  211 (258)
Q Consensus       167 vvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~-~l~~~~  211 (258)
                      ++|-++. +++++++.++.|+++.+|+.++.+..|+..+ +.+.|.
T Consensus       261 V~IG~Sa-pgl~T~EmVk~Ma~~pIIfalsNPt~E~~pe~a~~~g~  305 (398)
T 2a9f_A          261 IFIGVSA-PGVLKAEWISKMAARPVIFAMANPIPEIYPDEALEAGA  305 (398)
T ss_dssp             SEEECCS-TTCCCHHHHHTSCSSCEEEECCSSSCSSCHHHHHTTTC
T ss_pred             EEEecCC-CCCCCHHHHHhhCCCCEEEECCCCCccCCHHHHHHhCC
Confidence            9998875 8999999999999999999999985454433 334343

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.29  E-value=1.4e-06  Score=77.70  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=67.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC-----------Cc-ccCHHHHHHhCCeeeeccCccc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG-----------FS-VVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g-----------~~-~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      ..+|+|||+|.||..++..|...|.+|+++++++++.+...+.|           +. ..++++ ++.+|+|++|+.. .
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-Q   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-G
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-H
Confidence            46899999999999999999999999999999987765544444           22 235667 7889999999764 3


Q ss_pred             cccHHHHhcCC-CCcEEEecCCC
Q psy16115        177 VVTREHMDKMK-NGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k-~g~~ivnvg~~  198 (258)
                      .+. +.++.++ ++.++|++..+
T Consensus        92 ~~~-~v~~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           92 YIR-EHLLRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             GHH-HHHTTCSSCCSEEEECCCC
T ss_pred             HHH-HHHHHhCcCCCEEEEEeCC
Confidence            343 5665565 78899998866

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.28  E-value=8.8e-07  Score=77.15  Aligned_cols=107  Identities=12%  Similarity=0.062  Sum_probs=74.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc----ccccHHHHh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK----NVVTREHMD  184 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~----~~i~~~~l~  184 (258)
                      |++++|+|+|.+|+.++..|...|.+|++++|++++.+...+.++...+++++ .++|+||.|+...    ..+..+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l-~~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPK-SAFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCS-SCCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHh-ccCCEEEEcccCCCCCCCCCChHHHH
Confidence            89999999999999999999999988999999998865433555544444443 2899999986321    245545333


Q ss_pred             -cCCCCcEEEecCCCChhhchh-hhcCCCceeee
Q psy16115        185 -KMKNGCVVCNMGHSNTEIDVN-SLRTPDLTWEK  216 (258)
Q Consensus       185 -~~k~g~~ivnvg~~~~~~~~~-~l~~~~i~~~~  216 (258)
                       .++++.+++|+...+...++. +-+.|.-.+.|
T Consensus       197 ~~l~~~~~v~D~vY~P~T~ll~~A~~~G~~~~~G  230 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGFLTPFLSLAKELKTPFQDG  230 (269)
T ss_dssp             HHHHHCSEEEESCCSSCCHHHHHHHHTTCCEECS
T ss_pred             hhCCCCCEEEEeCCCCchHHHHHHHHCcCEEECC
Confidence             578899999998765222333 33444333344

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=98.27  E-value=3.7e-07  Score=82.05  Aligned_cols=89  Identities=22%  Similarity=0.283  Sum_probs=71.1

Q ss_pred             CC--CEEEEEcC-chHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CCCcc------cCHHHHHH-----hCCeeeec
Q psy16115        108 GG--KQVVLCGY-GEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DGFSV------VKLNEVIR-----TVDIVVTA  171 (258)
Q Consensus       108 ~g--~~V~IiG~-G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g~~~------~~l~e~~~-----~aDvvi~~  171 (258)
                      .|  ++|+|.|+ |.||+.+++.++..|+ +|+++++++.+.+.+.+ .|++.      .+..+.+.     ..|+++.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            68  99999998 9999999999999999 99999999888776665 67542      12333333     37999999


Q ss_pred             cCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        172 TGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++. ..+ .+.++.++++++++.+|..
T Consensus       238 ~G~-~~~-~~~~~~l~~~G~iv~~G~~  262 (357)
T 2zb4_A          238 VGG-NIS-DTVISQMNENSHIILCGQI  262 (357)
T ss_dssp             CCH-HHH-HHHHHTEEEEEEEEECCCG
T ss_pred             CCH-HHH-HHHHHHhccCcEEEEECCc
Confidence            885 444 3788999999999999875

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.27  E-value=1.7e-06  Score=72.71  Aligned_cols=88  Identities=15%  Similarity=0.169  Sum_probs=65.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEE-EeCChhhHHHH-HhCCCcc-cCHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEIDPICALQA-CMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d~~~~~~~~a-~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      -.+|+|||+|.||..+++.+...|.+|++ +|+++++.+.. .+.|... .+..+.++++|+|++|+.. ..+. +.++.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~-~v~~~  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIA-DIVTQ  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHH-HHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHH-HHHHH
Confidence            36899999999999999999999999888 99999886553 3345432 3455668899999999743 2332 44444


Q ss_pred             C--CCCcEEEecCCC
Q psy16115        186 M--KNGCVVCNMGHS  198 (258)
Q Consensus       186 ~--k~g~~ivnvg~~  198 (258)
                      +  .++.++++++.+
T Consensus       101 l~~~~~~ivi~~~~g  115 (220)
T 4huj_A          101 VSDWGGQIVVDASNA  115 (220)
T ss_dssp             CSCCTTCEEEECCCC
T ss_pred             hhccCCCEEEEcCCC
Confidence            4  257799998866

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.27  E-value=2.3e-06  Score=79.80  Aligned_cols=126  Identities=12%  Similarity=0.116  Sum_probs=78.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH--------HHHhCCC-------------c-ccCHHHHHHhCC
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL--------QACMDGF-------------S-VVKLNEVIRTVD  166 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~--------~a~~~g~-------------~-~~~l~e~~~~aD  166 (258)
                      =++|+|||+|.||..+|..+...|.+|+++|+++++..        .+.+.|.             . ..+++ .+++||
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aD  132 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCD  132 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCC
Confidence            37999999999999999999999999999999987421        2223332             1 22453 578899


Q ss_pred             eeeeccCccc----cccHHHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115        167 IVVTATGNKN----VVTREHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR  241 (258)
Q Consensus       167 vvi~~~~~~~----~i~~~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  241 (258)
                      +||+|.....    .+-++..+.++++++++ |++.-+.....+.+... -...+.+...     |..   -...+.++.
T Consensus       133 lVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p-~r~iG~Hffn-----Pv~---~m~LvEIv~  203 (460)
T 3k6j_A          133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDP-SNLVGIHFFN-----PAN---VIRLVEIIY  203 (460)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSG-GGEEEEECCS-----STT---TCCEEEEEC
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCC-cceEEEEecc-----hhh---hCCEEEEEe
Confidence            9999964321    12234556789999996 44433544433333322 2344443322     222   224566777


Q ss_pred             CCC
Q psy16115        242 KPK  244 (258)
Q Consensus       242 ~~~  244 (258)
                      +++
T Consensus       204 g~~  206 (460)
T 3k6j_A          204 GSH  206 (460)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=98.27  E-value=1e-06  Score=79.49  Aligned_cols=89  Identities=19%  Similarity=0.187  Sum_probs=73.0

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      .|++|+|+| .|.||+.+++.++..|++|+++++++++.+.+++.|++..      ++.+.++     +.|+++.|++. 
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-  241 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-  241 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence            799999999 6999999999999999999999999988887888886521      3334433     37999999876 


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..+ ...++.++++++++.+|..
T Consensus       242 ~~~-~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          242 AMF-DLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             HHH-HHHHHHEEEEEEEEECCCG
T ss_pred             HHH-HHHHHHHhcCCEEEEEeCC
Confidence            344 3788999999999999875

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.27  E-value=1.8e-06  Score=78.03  Aligned_cols=89  Identities=10%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC--------------c-ccCHHHHHHhCCeeeeccC
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF--------------S-VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~--------------~-~~~l~e~~~~aDvvi~~~~  173 (258)
                      ..+|+|||+|.+|..+|..|...|.+|+++++++++.+...+.+.              . ..++++.++++|+|+++..
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp  108 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP  108 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence            468999999999999999999999999999999887655443321              1 2367888999999999964


Q ss_pred             cc---ccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NK---NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~---~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..   .++ .+....++++.+++++..|
T Consensus       109 ~~~~~~vl-~~i~~~l~~~~ivvs~~kG  135 (356)
T 3k96_A          109 SFAFHEVI-TRMKPLIDAKTRIAWGTKG  135 (356)
T ss_dssp             HHHHHHHH-HHHGGGCCTTCEEEECCCS
T ss_pred             HHHHHHHH-HHHHHhcCCCCEEEEEeCC
Confidence            43   223 2344567889999998877

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.26  E-value=3.1e-06  Score=79.46  Aligned_cols=89  Identities=17%  Similarity=0.208  Sum_probs=67.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-------C-------------Cc-ccCHHHHHHhCCe
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-------G-------------FS-VVKLNEVIRTVDI  167 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-------g-------------~~-~~~l~e~~~~aDv  167 (258)
                      ..+|+|||+|.||..+|..|...|.+|+++|+++.+.+...+.       |             .. ..++++.++.+|+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            4699999999999999999999999999999999877654432       1             11 1256677889999


Q ss_pred             eeeccCcc---------cccc---HHHHhcCCCCcEEEecCC
Q psy16115        168 VVTATGNK---------NVVT---REHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       168 vi~~~~~~---------~~i~---~~~l~~~k~g~~ivnvg~  197 (258)
                      ||+|..++         ..+.   .+..+.++++.++|+.+.
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ST  129 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKST  129 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            99997663         2221   133456899999999874

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.24  E-value=3.8e-06  Score=77.37  Aligned_cols=90  Identities=27%  Similarity=0.361  Sum_probs=73.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh------hhHHHHHhCCCcccCHHHHHHhCCeeeecc---Ccccc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP------ICALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNV  177 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~------~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~---~~~~~  177 (258)
                      |+||+|+|||+|.-|.+-|+.||..|.+|++--|..      .....|.+.|+.+.+..|+++.+|+|+.-+   ....+
T Consensus        35 lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~q~~v  114 (491)
T 3ulk_A           35 LQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSDV  114 (491)
T ss_dssp             GTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGGHHHH
T ss_pred             HcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhhHHHH
Confidence            699999999999999999999999999988865522      234568889999999999999999999863   23345


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .. +....||+|+.+.. +.|
T Consensus       115 y~-~I~p~lk~G~~L~f-aHG  133 (491)
T 3ulk_A          115 VR-TVQPLMKDGAALGY-SHG  133 (491)
T ss_dssp             HH-HHGGGSCTTCEEEE-SSC
T ss_pred             HH-HHHhhCCCCCEEEe-cCc
Confidence            54 67778999999875 555

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.24  E-value=4.9e-06  Score=75.09  Aligned_cols=88  Identities=23%  Similarity=0.424  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHH-hCCC-EEEEEeCChhhHHHHHhC-----CCc---ccCHHHHHHhCCeeeeccCcc--
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACMD-----GFS---VVKLNEVIRTVDIVVTATGNK--  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~-~~G~-~Vi~~d~~~~~~~~a~~~-----g~~---~~~l~e~~~~aDvvi~~~~~~--  175 (258)
                      .+++++|||+|.+|+.+++.+. ..+. +|.++|+++++.+...+.     |..   ..+++++++++|+|++|+...  
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~~  207 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAY  207 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCCC
Confidence            5789999999999999998875 3454 799999999886553322     432   347889999999999997553  


Q ss_pred             -ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 -NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 -~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       .++..   +++++|..++++|..
T Consensus       208 ~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          208 ATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEECG---GGCCTTCEEEECSCC
T ss_pred             CceecH---HHcCCCCEEEECCCC
Confidence             34542   468999999999975

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.23  E-value=9e-07  Score=77.42  Aligned_cols=91  Identities=11%  Similarity=0.159  Sum_probs=67.0

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc---CHHHHHHhCCeeeeccCcc--c-
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV---KLNEVIRTVDIVVTATGNK--N-  176 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~~aDvvi~~~~~~--~-  176 (258)
                      +.++.|++++|+|+|.+|+.++..|...|+ +|++++|++++.+... ......   ++.+.+.++|+||.++...  . 
T Consensus       112 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la-~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~  190 (277)
T 3don_A          112 YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWS-LNINKINLSHAESHLDEFDIIINTTPAGMNGN  190 (277)
T ss_dssp             STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC-SCCEEECHHHHHHTGGGCSEEEECCC------
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HhcccccHhhHHHHhcCCCEEEECccCCCCCC
Confidence            345789999999999999999999999999 7999999988754322 122222   3445567899999986321  1 


Q ss_pred             ---cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 ---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                         .++   .+.++++.+++|+...
T Consensus       191 ~~~~l~---~~~l~~~~~V~D~vY~  212 (277)
T 3don_A          191 TDSVIS---LNRLASHTLVSDIVYN  212 (277)
T ss_dssp             -CCSSC---CTTCCSSCEEEESCCS
T ss_pred             CcCCCC---HHHcCCCCEEEEecCC
Confidence               122   3567999999999866

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=98.23  E-value=1.3e-06  Score=77.87  Aligned_cols=89  Identities=19%  Similarity=0.208  Sum_probs=72.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcc-------cCHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-------VKLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~-------~~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|+ |.||+.+++.++..|++|+++++++.+.+.+. +.|.+.       .++.+.+.     +.|+++.+++
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            7999999997 99999999999999999999999998877776 567531       12333333     4799999987


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . ..+. ..++.++++++++.+|..
T Consensus       235 ~-~~~~-~~~~~l~~~G~~v~~G~~  257 (345)
T 2j3h_A          235 G-KMLD-AVLVNMNMHGRIAVCGMI  257 (345)
T ss_dssp             H-HHHH-HHHTTEEEEEEEEECCCG
T ss_pred             H-HHHH-HHHHHHhcCCEEEEEccc
Confidence            6 3553 788999999999999865

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.23  E-value=2.2e-06  Score=76.10  Aligned_cols=109  Identities=20%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-------cCHHHHHH-----hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-------VKLNEVIR-----TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-------~~l~e~~~-----~aDvvi~~~~~  174 (258)
                      +|++|+|.|+ |.||+.+++.++..|++|+++++++.+.+.+.+.|.+.       .++.+.+.     ..|+++.+++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  224 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  224 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCCh
Confidence            7999999998 99999999999999999999999988877776777531       23333333     37999999876


Q ss_pred             cccccHHHHhcCCCCcEEEecCCCCh------h---hchhhhcCCCceeeeec
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHSNT------E---IDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~~~------~---~~~~~l~~~~i~~~~~~  218 (258)
                      . .+ .+.++.++++++++.+|....      .   .....+..+++++.++.
T Consensus       225 ~-~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~  275 (333)
T 1v3u_A          225 E-FL-NTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFI  275 (333)
T ss_dssp             H-HH-HHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECC
T ss_pred             H-HH-HHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEe
Confidence            4 34 478899999999999986521      1   12334555677777653

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.22  E-value=2.4e-06  Score=78.04  Aligned_cols=81  Identities=19%  Similarity=0.260  Sum_probs=67.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCC---EEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc----Ccccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGC---VIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT----GNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~---~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~----~~~~~i~  179 (258)
                      ...+|.|||. |.+|+..++.++.+|+   .|.++|+++..      .|..+    +.+.++|+||.|.    ..+.+++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~~----~~i~~aDivIn~vlig~~aP~Lvt  282 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGPF----DEIPQADIFINCIYLSKPIAPFTN  282 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSCC----THHHHSSEEEECCCCCSSCCCSCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCch----hhHhhCCEEEECcCcCCCCCcccC
Confidence            5678999999 9999999999999998   89999987622      13322    3467999999984    4678999


Q ss_pred             HHHHhcC-CCCcEEEecCCC
Q psy16115        180 REHMDKM-KNGCVVCNMGHS  198 (258)
Q Consensus       180 ~~~l~~~-k~g~~ivnvg~~  198 (258)
                      ++.++.| |+|++|||++-.
T Consensus       283 ~e~v~~m~k~gsVIVDVA~D  302 (394)
T 2qrj_A          283 MEKLNNPNRRLRTVVDVSAD  302 (394)
T ss_dssp             HHHHCCTTCCCCEEEETTCC
T ss_pred             HHHHhcCcCCCeEEEEEecC
Confidence            9999999 999999999754

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.22  E-value=3.6e-06  Score=77.20  Aligned_cols=86  Identities=15%  Similarity=0.127  Sum_probs=64.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC------------------c-ccCHHHHHHhCCeeeec
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF------------------S-VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~------------------~-~~~l~e~~~~aDvvi~~  171 (258)
                      +|+|||+|.||..+|..|.. |.+|+++|+++.+.+...+.+.                  . ..++.+.++.+|+|++|
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviia   80 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIA   80 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEe
Confidence            79999999999999999998 9999999999987765544443                  1 12466778899999999


Q ss_pred             cCccc----------ccc---HHHHhcCCCCcEEEecCCC
Q psy16115        172 TGNKN----------VVT---REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~~~~~----------~i~---~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.++.          .+.   .+..+ ++++.++|+.+..
T Consensus        81 vpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~  119 (402)
T 1dlj_A           81 TPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTI  119 (402)
T ss_dssp             CCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCC
T ss_pred             cCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence            76652          121   12344 7889999985443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.22  E-value=8.3e-06  Score=75.54  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--ccCHHHHH---------------HhCCeeee
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVI---------------RTVDIVVT  170 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~---------------~~aDvvi~  170 (258)
                      .|.++.|||+|.+|..+|..|...|.+|+++|+++++.+...+....  ...+++++               ++||++|+
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii   89 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFII   89 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEE
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEE
Confidence            78999999999999999999999999999999999887654332111  11233332               35899999


Q ss_pred             ccCcccccc--------------HHHHhcCCCCcEEEecCCC
Q psy16115        171 ATGNKNVVT--------------REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       171 ~~~~~~~i~--------------~~~l~~~k~g~~ivnvg~~  198 (258)
                      |.+|+.-.+              ....+.+++|.++|+.+.-
T Consensus        90 ~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV  131 (431)
T 3ojo_A           90 AVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTI  131 (431)
T ss_dssp             CCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCC
T ss_pred             EeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            977664211              2345678999999998865

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.21  E-value=4.7e-06  Score=74.27  Aligned_cols=87  Identities=17%  Similarity=0.192  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHHhC------CCcccCHHHHHHhCCeeeeccCccc-cc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQACMD------GFSVVKLNEVIRTVDIVVTATGNKN-VV  178 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~~~------g~~~~~l~e~~~~aDvvi~~~~~~~-~i  178 (258)
                      ..++++|||+|.+|+.+++.+.. .+. +|.++|+++++.+...+.      .+...++++++ ++|+|++|+.+.. ++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~pv~  202 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKPVV  202 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSCCB
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCcee
Confidence            57899999999999999999876 444 699999999886543321      12245788888 9999999975443 44


Q ss_pred             cHHHHhcCCCCcEEEecCCC
Q psy16115        179 TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .   .+++++|..++++|..
T Consensus       203 ~---~~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          203 K---AEWVEEGTHINAIGAD  219 (322)
T ss_dssp             C---GGGCCTTCEEEECSCC
T ss_pred             c---HHHcCCCeEEEECCCC
Confidence            3   2468999999999866

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.21  E-value=5.4e-06  Score=77.48  Aligned_cols=89  Identities=25%  Similarity=0.272  Sum_probs=62.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CC-----------Cc-ccCHHHHHHhC
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DG-----------FS-VVKLNEVIRTV  165 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g-----------~~-~~~l~e~~~~a  165 (258)
                      -++|+|||+|.||..+|..+...|.+|+++|+++.+++.+.+           .|           .. ..++ +.++++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999999876554322           11           01 1244 457789


Q ss_pred             CeeeeccCccc----cccHHHHhcCCCCcEEEecCCC
Q psy16115        166 DIVVTATGNKN----VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       166 Dvvi~~~~~~~----~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      |+||+|.....    .+-.+..+.++++++++....+
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~  152 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA  152 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC
Confidence            99999974431    1112344567899998863333

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.20  E-value=4.4e-06  Score=65.03  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=63.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHH-----HHhCCeeeeccCccccc-
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEV-----IRTVDIVVTATGNKNVV-  178 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~-----~~~aDvvi~~~~~~~~i-  178 (258)
                      .++++|+|+|.+|+.+++.|+..|.+|+++|+++++...+.+.|+...    +-.+.     +.++|+++.+++....- 
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            468999999999999999999999999999999998877777776432    11222     34789999987654311 


Q ss_pred             -cHHHHhcCCCCcEEEecCC
Q psy16115        179 -TREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       179 -~~~~l~~~k~g~~ivnvg~  197 (258)
                       -...++.+.++..++-...
T Consensus        87 ~~~~~a~~~~~~~~iiar~~  106 (140)
T 3fwz_A           87 EIVASARAKNPDIEIIARAH  106 (140)
T ss_dssp             HHHHHHHHHCSSSEEEEEES
T ss_pred             HHHHHHHHHCCCCeEEEEEC
Confidence             1134455556666654433

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.19  E-value=3.9e-06  Score=71.78  Aligned_cols=91  Identities=11%  Similarity=0.145  Sum_probs=62.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCC----CEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLG----CVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      ..+|+|||+|.||..++..|...|    .+|+++|+++.+      .|+.. .+..+.++++|+|++|+... .+. +.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~~-~~~-~v~   75 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKPD-IAG-SVL   75 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCTT-THH-HHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCHH-HHH-HHH
Confidence            358999999999999999999888    579999998875      46554 36788889999999997532 222 333


Q ss_pred             ----hcCCCCcEEEecCCC-Chhhchhhhc
Q psy16115        184 ----DKMKNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       184 ----~~~k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                          ..++ +..++....+ +.+..-+.+.
T Consensus        76 ~~l~~~l~-~~~vv~~~~gi~~~~l~~~~~  104 (262)
T 2rcy_A           76 NNIKPYLS-SKLLISICGGLNIGKLEEMVG  104 (262)
T ss_dssp             HHSGGGCT-TCEEEECCSSCCHHHHHHHHC
T ss_pred             HHHHHhcC-CCEEEEECCCCCHHHHHHHhC
Confidence                3344 4445444444 5544333443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.19  E-value=2.9e-06  Score=79.62  Aligned_cols=91  Identities=16%  Similarity=0.057  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC-CC-EEEEEeCChh----hHHHHHh---------------------CC-CcccCHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL-GC-VIYITEIDPI----CALQACM---------------------DG-FSVVKLN  159 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~-G~-~Vi~~d~~~~----~~~~a~~---------------------~g-~~~~~l~  159 (258)
                      +-.+|+|||+|.+|..+|..+... |. +|+++|+++.    +.+...+                     .+ ....+..
T Consensus        17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~   96 (478)
T 3g79_A           17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDF   96 (478)
T ss_dssp             SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCG
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcH
Confidence            346899999999999999999999 99 9999999998    6543322                     11 1122225


Q ss_pred             HHHHhCCeeeeccCcccc-----------c---cHHHHhcCCCCcEEEecCCC
Q psy16115        160 EVIRTVDIVVTATGNKNV-----------V---TREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       160 e~~~~aDvvi~~~~~~~~-----------i---~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.++++|+||+|..++.-           +   .....+.+++|.++|+.+.-
T Consensus        97 ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  149 (478)
T 3g79_A           97 SRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTI  149 (478)
T ss_dssp             GGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred             HHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCC
Confidence            667789999999766531           1   12345678999999998865

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.19  E-value=1.9e-06  Score=80.63  Aligned_cols=88  Identities=40%  Similarity=0.688  Sum_probs=79.0

Q ss_pred             eeeeccccccccccCCCcchh------hHHHHHHHHHhCCC-CCCCCceEECChhhhHHHHhcccCccccccccCCHHHH
Q psy16115          9 WTLGFKRRVSPVCIRSNPLII------PQALALIELFNAPA-GRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQA   81 (258)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~l~~~~~-~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~   81 (258)
                      .+++.+|++|.++..++|..+      +|+|++.+++..++ ++|..+|+.+|..+|++||++.+..+++.++.+++.+.
T Consensus       391 ~lLaeGRIVNlsS~~G~p~~vm~~sfa~Q~la~~~l~~~~~~~~~~~gv~~lp~~ld~~vA~l~l~~~g~~l~~lt~~q~  470 (488)
T 3ond_A          391 IILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQA  470 (488)
T ss_dssp             EEEGGGSCHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSSEECCCHHHHHHHHHHHHGGGTCCCCCCCHHHH
T ss_pred             HHHcCCcEEEEecCcccCcccccccHHHHHHHHHHHHhCCCccccCCCceeCCHHHHHHHHHHhchhcCCchhhcCHHHH
Confidence            356789999999999999874      89999999999852 27889999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCCcch
Q psy16115         82 KYMGLNKAGPFKPSY   96 (258)
Q Consensus        82 ~~~~~~~~g~~~~~~   96 (258)
                      +|+..++.||+.+..
T Consensus       471 ~y~~~~~~g~~k~~~  485 (488)
T 3ond_A          471 DYISVPVEGPYKPFH  485 (488)
T ss_dssp             HHTTCCTTSCCSCTT
T ss_pred             HHcCCCCCCCCCccC
Confidence            999999999987654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.18  E-value=3.2e-06  Score=64.99  Aligned_cols=91  Identities=18%  Similarity=0.252  Sum_probs=60.4

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-----cCHHHH----HHhCCeeeeccCcc-c
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VKLNEV----IRTVDIVVTATGNK-N  176 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-----~~l~e~----~~~aDvvi~~~~~~-~  176 (258)
                      +.+++++|+|+|.+|+.+++.|...|.+|+++|+++.+.....+.+...     .+.+.+    +.++|+++.+++.. .
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            4678999999999999999999999999999999987765444444431     122222    45789999998654 2


Q ss_pred             --cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 --VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 --~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                        ..-....+.+.+. .++....+
T Consensus        84 ~~~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           84 ASTLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             HHHHHHHHHHHTTCS-EEEEECCS
T ss_pred             HHHHHHHHHHHcCCC-eEEEEeCC
Confidence              1212344555665 44444443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.16  E-value=1.8e-06  Score=75.11  Aligned_cols=92  Identities=20%  Similarity=0.183  Sum_probs=65.4

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hC----CCcccCHHHHHH-hCCeeeeccCcccc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MD----GFSVVKLNEVIR-TVDIVVTATGNKNV  177 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~----g~~~~~l~e~~~-~aDvvi~~~~~~~~  177 (258)
                      +.++.+++++|+|+|.+|+.++..|...|.+|++++|++++.+... +.    .....+++++.+ ++|+||.+++....
T Consensus       114 ~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~  193 (272)
T 1p77_A          114 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS  193 (272)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCC
Confidence            4467899999999999999999999999999999999987754322 11    122233443323 79999999754332


Q ss_pred             -----ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 -----VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 -----i~~~~l~~~k~g~~ivnvg~~  198 (258)
                           +..+   .++++.+++|+...
T Consensus       194 ~~~~~i~~~---~l~~~~~v~D~~y~  216 (272)
T 1p77_A          194 GGTASVDAE---ILKLGSAFYDMQYA  216 (272)
T ss_dssp             ----CCCHH---HHHHCSCEEESCCC
T ss_pred             CCCCCCCHH---HcCCCCEEEEeeCC
Confidence                 3323   24678899999876

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.15  E-value=6.5e-06  Score=63.75  Aligned_cols=68  Identities=15%  Similarity=0.183  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-----cCHHHH----HHhCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VKLNEV----IRTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-----~~l~e~----~~~aDvvi~~~~~~  175 (258)
                      .+++++|+|+|.+|+.+++.|...|.+|+++|+++.+...+.+.+...     .+.+.+    +.++|+++.+++..
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~   81 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDD   81 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence            467899999999999999999999999999999998877766666542     122222    24689999987643

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.15  E-value=1.2e-06  Score=79.03  Aligned_cols=87  Identities=9%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC--------------Ccc-cCHHHHHHhCCeeeeccCcc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG--------------FSV-VKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g--------------~~~-~~l~e~~~~aDvvi~~~~~~  175 (258)
                      +|+|||+|.||..+|..|...|.+|+++|+++.+.+...+.+              +.. .++.+.++.+|+|++|+...
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~~   96 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ   96 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCChH
Confidence            899999999999999999999999999999987765443322              222 35778888999999997542


Q ss_pred             c---cccHH----HHhcCCC-CcEEEecCCC
Q psy16115        176 N---VVTRE----HMDKMKN-GCVVCNMGHS  198 (258)
Q Consensus       176 ~---~i~~~----~l~~~k~-g~~ivnvg~~  198 (258)
                      .   ++. +    ....+++ +.+++++..+
T Consensus        97 ~~~~v~~-~~~~gl~~~l~~~~~ivv~~~~g  126 (366)
T 1evy_A           97 FLRGFFE-KSGGNLIAYAKEKQVPVLVCTKG  126 (366)
T ss_dssp             HHHHHHH-HHCHHHHHHHHHHTCCEEECCCS
T ss_pred             HHHHHHH-HhHHHHHHhcCccCCEEEEECCc
Confidence            2   221 2    2234567 8889988766

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.14  E-value=9.1e-06  Score=70.07  Aligned_cols=100  Identities=20%  Similarity=0.184  Sum_probs=71.4

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CC-CcccCHHHHHHhCCeeeeccCc-----ccc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DG-FSVVKLNEVIRTVDIVVTATGN-----KNV  177 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g-~~~~~l~e~~~~aDvvi~~~~~-----~~~  177 (258)
                      .+.| +++|+|+|.+|+.++..|...|+ +|++++|++++.+...+ .+ ....++.+.++++|+||.|+..     ...
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~  184 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELP  184 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCS
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCC
Confidence            3578 99999999999999999999998 79999999887543221 12 1234567788899999998631     123


Q ss_pred             ccHHHHhcCCCCcEEEecCCCChhhchh-hhcCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHSNTEIDVN-SLRTP  210 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~~~~~~~~-~l~~~  210 (258)
                      ++.   +.++++.+++|+..+ ...+++ +.+.|
T Consensus       185 i~~---~~l~~~~~V~Divy~-~T~ll~~A~~~G  214 (253)
T 3u62_A          185 VSD---DSLKNLSLVYDVIYF-DTPLVVKARKLG  214 (253)
T ss_dssp             CCH---HHHTTCSEEEECSSS-CCHHHHHHHHHT
T ss_pred             CCH---HHhCcCCEEEEeeCC-CcHHHHHHHHCC
Confidence            443   335789999999877 444443 33333

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.14  E-value=1.5e-05  Score=60.97  Aligned_cols=87  Identities=22%  Similarity=0.321  Sum_probs=59.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc-----cCHHHH----HHhCCeeeeccCcccc-
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-----VKLNEV----IRTVDIVVTATGNKNV-  177 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-----~~l~e~----~~~aDvvi~~~~~~~~-  177 (258)
                      +.+|+|+|+|.+|+.+++.|...|.+|+++|+++.+.....+ .+...     .+.+.+    +.++|+|+.+++.... 
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            468999999999999999999999999999999887654432 35432     122222    4578999999765421 


Q ss_pred             -ccHHHHhcCCCCcEEEec
Q psy16115        178 -VTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       178 -i~~~~l~~~k~g~~ivnv  195 (258)
                       .-.+..+.++++.+++-.
T Consensus        84 ~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             HHHHHHHHHTTCCCEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEEe
Confidence             111344556666555543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.10  E-value=4.2e-06  Score=73.28  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=71.6

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh-CC----CcccCHHHHHHhCCeeeeccCcc--
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM-DG----FSVVKLNEVIRTVDIVVTATGNK--  175 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~-~g----~~~~~l~e~~~~aDvvi~~~~~~--  175 (258)
                      +.++.|++++|+|+|.+|+.++..|...|+ +|++++|++++.+...+ .+    +...+++++..++|+||.|+...  
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~  200 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD  200 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC
Confidence            456799999999999999999999999997 89999999887544222 11    23345555446799999986332  


Q ss_pred             ---ccccHHHHhcCCCCcEEEecCCCC-hhhchhhh
Q psy16115        176 ---NVVTREHMDKMKNGCVVCNMGHSN-TEIDVNSL  207 (258)
Q Consensus       176 ---~~i~~~~l~~~k~g~~ivnvg~~~-~~~~~~~l  207 (258)
                         ..+.   .+.++++.+++|+.-.+ ...++...
T Consensus       201 ~~~~~l~---~~~l~~~~~V~DlvY~P~~T~ll~~A  233 (281)
T 3o8q_A          201 GELPAID---PVIFSSRSVCYDMMYGKGYTVFNQWA  233 (281)
T ss_dssp             ---CSCC---GGGEEEEEEEEESCCCSSCCHHHHHH
T ss_pred             CCCCCCC---HHHhCcCCEEEEecCCCccCHHHHHH
Confidence               1233   24578899999997662 33344433

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=98.09  E-value=1.5e-06  Score=77.80  Aligned_cols=87  Identities=18%  Similarity=0.199  Sum_probs=61.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCcc-----cCHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFSV-----VKLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~~-----~~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|++|+|+|+ |.+|+.+++.++..| .+|+..+ ++.+.+.++ .|++.     .++.+.++     +.|+++.|++..
T Consensus       142 ~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~~~~~~~~~~~~~~~~g~Dvv~d~~g~~  219 (349)
T 4a27_A          142 EGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGD  219 (349)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEETTSCHHHHHHHHCTTCEEEEEEECC--
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEcCCccHHHHHHHhcCCCceEEEECCCch
Confidence            7999999999 999999999999986 5888887 455555554 66642     13333332     479999998876


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..  .+.++.++++++++.+|..
T Consensus       220 ~~--~~~~~~l~~~G~~v~~G~~  240 (349)
T 4a27_A          220 NT--GKGLSLLKPLGTYILYGSS  240 (349)
T ss_dssp             -------CTTEEEEEEEEEEC--
T ss_pred             hH--HHHHHHhhcCCEEEEECCC
Confidence            54  3788999999999999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.08  E-value=6.5e-06  Score=77.28  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHHhCC-------------------Ccc-cCHHHHHHhCCe
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDG-------------------FSV-VKLNEVIRTVDI  167 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~~g-------------------~~~-~~l~e~~~~aDv  167 (258)
                      .+|+|||+|.||..+|..|...  |.+|+++|+++.+.+...+.+                   ... .++.+.++++|+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999887  689999999998765543311                   111 245677889999


Q ss_pred             eeeccCcccc--------------cc---HHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKNV--------------VT---REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~~--------------i~---~~~l~~~k~g~~ivnvg~~  198 (258)
                      |++|..++.-              +.   .+..+.++++.++|+.+..
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  137 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTV  137 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence            9999655421              11   1334568999999997644

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=98.08  E-value=5.6e-06  Score=72.39  Aligned_cols=92  Identities=18%  Similarity=0.148  Sum_probs=66.1

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CC----------CcccCHHHHHHhCCeeeecc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG----------FSVVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g----------~~~~~l~e~~~~aDvvi~~~  172 (258)
                      +.++.|++++|+|.|.||+.++..|...| +|+++++++++.+...+ .+          .+..++.+.+.++|++|.++
T Consensus       123 ~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          123 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT  201 (287)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred             CCCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECC
Confidence            34578999999999999999999999999 99999999876543211 11          11222244456799999997


Q ss_pred             Ccccc-------ccHHHHhcCCCCcEEEecCCC
Q psy16115        173 GNKNV-------VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ~~~~~-------i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +....       +.  ..+.++++.+++|+...
T Consensus       202 g~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          202 PIGMYPNIDVEPIV--KAEKLREDMVVMDLIYN  232 (287)
T ss_dssp             CTTCTTCCSSCCSS--CSTTCCSSSEEEECCCS
T ss_pred             CCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeC
Confidence            54321       20  13567899999999865

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.07  E-value=4.6e-06  Score=74.60  Aligned_cols=89  Identities=11%  Similarity=0.128  Sum_probs=64.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCC-------CEEEEEeCChh-----hHHHHHhC--------------CCc-ccCHHHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLG-------CVIYITEIDPI-----CALQACMD--------------GFS-VVKLNEV  161 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G-------~~Vi~~d~~~~-----~~~~a~~~--------------g~~-~~~l~e~  161 (258)
                      ..+|+|||+|.||..+|..|...|       .+|+++|+++.     +.+...+.              ++. ..++++.
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            358999999999999999998888       78999999887     54433221              112 2357788


Q ss_pred             HHhCCeeeeccCccc---cccHHHHhcCCCCcEEEecCCC
Q psy16115        162 IRTVDIVVTATGNKN---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       162 ~~~aDvvi~~~~~~~---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++++|+|++|+....   ++. +....++++.+++++..+
T Consensus        88 ~~~aD~Vilav~~~~~~~v~~-~i~~~l~~~~ivv~~~~G  126 (354)
T 1x0v_A           88 AEDADILIFVVPHQFIGKICD-QLKGHLKANATGISLIKG  126 (354)
T ss_dssp             HTTCSEEEECCCGGGHHHHHH-HHTTCSCTTCEEEECCCC
T ss_pred             HcCCCEEEEeCCHHHHHHHHH-HHHhhCCCCCEEEEECCc
Confidence            889999999974432   221 333456789999998876

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.06  E-value=1.9e-05  Score=69.15  Aligned_cols=109  Identities=17%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHH-hC-----CCc-----ccCHHHHHHhCCeeeecc
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-MD-----GFS-----VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~-~~-----g~~-----~~~l~e~~~~aDvvi~~~  172 (258)
                      .++.|++++|+|+|.+|+.++..|...|+ +|++++|++++.+... +.     +..     ..++++.+.++|+||.|+
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            45789999999999999999999999999 6999999988765321 11     111     125777888999999986


Q ss_pred             Cc--cc----cccHHHHhcCCCCcEEEecCCCC-hhhch-hhhcCCCceeee
Q psy16115        173 GN--KN----VVTREHMDKMKNGCVVCNMGHSN-TEIDV-NSLRTPDLTWEK  216 (258)
Q Consensus       173 ~~--~~----~i~~~~l~~~k~g~~ivnvg~~~-~~~~~-~~l~~~~i~~~~  216 (258)
                      ..  ..    .+.   .+.++++.+++|+--.+ ...++ .+-+.|.-.+.|
T Consensus       203 p~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P~~T~ll~~A~~~G~~~~~G  251 (283)
T 3jyo_A          203 PMGMPAHPGTAFD---VSCLTKDHWVGDVVYMPIETELLKAARALGCETLDG  251 (283)
T ss_dssp             STTSTTSCSCSSC---GGGCCTTCEEEECCCSSSSCHHHHHHHHHTCCEECT
T ss_pred             CCCCCCCCCCCCC---HHHhCCCCEEEEecCCCCCCHHHHHHHHCcCeEeCc
Confidence            31  11    233   34578899999987663 33333 344444333333

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.05  E-value=7.3e-06  Score=71.41  Aligned_cols=93  Identities=18%  Similarity=0.223  Sum_probs=67.8

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHH-HhCC---CcccCHHHHH-HhCCeeeeccCcc-
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDG---FSVVKLNEVI-RTVDIVVTATGNK-  175 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a-~~~g---~~~~~l~e~~-~~aDvvi~~~~~~-  175 (258)
                      .+.++.|++++|+|+|.+|+.++..|...|+ +|++++|++++.+.. .+.+   +...+++++- .++|+||.|+... 
T Consensus       114 ~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm  193 (272)
T 3pwz_A          114 LGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASL  193 (272)
T ss_dssp             SCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGG
T ss_pred             cCCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCC
Confidence            3556799999999999999999999999996 899999999876542 2222   2333344432 6799999986322 


Q ss_pred             ----ccccHHHHhcCCCCcEEEecCCC
Q psy16115        176 ----NVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ----~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                          ..+.   .+.++++.+++|+.-.
T Consensus       194 ~~~~~~i~---~~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          194 TADLPPLP---ADVLGEAALAYELAYG  217 (272)
T ss_dssp             GTCCCCCC---GGGGTTCSEEEESSCS
T ss_pred             CCCCCCCC---HHHhCcCCEEEEeecC
Confidence                1233   2457899999999766

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.04  E-value=1.6e-05  Score=78.15  Aligned_cols=98  Identities=19%  Similarity=0.233  Sum_probs=66.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-----------HhCCC-------------c-ccCHHHHHH
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-----------CMDGF-------------S-VVKLNEVIR  163 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-----------~~~g~-------------~-~~~l~e~~~  163 (258)
                      =++|+|||+|.||..+|..+...|.+|+++|+++++...+           .+.|.             . ..++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            3689999999999999999999999999999998876543           12231             1 1234 5678


Q ss_pred             hCCeeeeccCcccc----ccHHHHhcCCCCcEEEecCCC-Chhhchhhh
Q psy16115        164 TVDIVVTATGNKNV----VTREHMDKMKNGCVVCNMGHS-NTEIDVNSL  207 (258)
Q Consensus       164 ~aDvvi~~~~~~~~----i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l  207 (258)
                      ++|+||+|.....-    +-.+..+.++++++++..+.+ +.....+.+
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~  441 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKAL  441 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGC
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHh
Confidence            89999999643321    222444567899988744434 444333333

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.03  E-value=3e-06  Score=73.26  Aligned_cols=87  Identities=14%  Similarity=0.104  Sum_probs=62.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---CC----c-ccCHHHHHHhCCeeeeccCcccc---cc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---GF----S-VVKLNEVIRTVDIVVTATGNKNV---VT  179 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---g~----~-~~~l~e~~~~aDvvi~~~~~~~~---i~  179 (258)
                      +|+|||+|.||..+|..|...|.+|+++|+++.+.......   +.    . ..+..+.++.+|+|++|+....+   + 
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~-   80 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV-   80 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH-
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHHH-
Confidence            79999999999999999999999999999987654221111   21    0 12334667889999999755432   2 


Q ss_pred             HHHHhcCCCCcEEEecCCC
Q psy16115        180 REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+....++++.+++++..+
T Consensus        81 ~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           81 KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             HHHHTTSCTTSCEEEECSS
T ss_pred             HHHHhhCCCCCEEEEecCC
Confidence            1334457888899887666

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.01  E-value=3.5e-05  Score=68.48  Aligned_cols=111  Identities=18%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC---hhhHHHHH-h----CCC--ccc---C---HHHHHHhCC
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID---PICALQAC-M----DGF--SVV---K---LNEVIRTVD  166 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~---~~~~~~a~-~----~g~--~~~---~---l~e~~~~aD  166 (258)
                      +.++.|++++|+|+|.+|+.++..|...|+ +|++++|+   .++.+... +    .+.  ...   +   +.+.+.++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            556899999999999999999999999999 89999999   65544321 1    121  111   2   445677899


Q ss_pred             eeeeccCc--cc-----cccHHHHhcCCCCcEEEecCCCC-hhhch-hhhcCCCceeee
Q psy16115        167 IVVTATGN--KN-----VVTREHMDKMKNGCVVCNMGHSN-TEIDV-NSLRTPDLTWEK  216 (258)
Q Consensus       167 vvi~~~~~--~~-----~i~~~~l~~~k~g~~ivnvg~~~-~~~~~-~~l~~~~i~~~~  216 (258)
                      +||.|+..  ..     .+.  ..+.++++.+++|+--.+ +..++ .+-+.|.-.+.|
T Consensus       229 iIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P~~T~ll~~A~~~G~~~~~G  285 (315)
T 3tnl_A          229 IFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNG  285 (315)
T ss_dssp             EEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSSSSCHHHHHHHHTTCEEECS
T ss_pred             EEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCeEeCc
Confidence            99998631  11     121  234578899999987663 33343 344444433333

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.00  E-value=4.6e-06  Score=75.52  Aligned_cols=88  Identities=10%  Similarity=0.089  Sum_probs=63.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC-------CEEEEEeCChh-----hHHHHHhC--------------CCc-ccCHHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG-------CVIYITEIDPI-----CALQACMD--------------GFS-VVKLNEVI  162 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G-------~~Vi~~d~~~~-----~~~~a~~~--------------g~~-~~~l~e~~  162 (258)
                      .+|+|||+|.||..+|..|...|       .+|+++|+++.     +.+...+.              ++. ..++.+.+
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998888       89999999887     54433221              122 23577888


Q ss_pred             HhCCeeeeccCccc---cccHHHHh----cCCCCcEEEecCCC
Q psy16115        163 RTVDIVVTATGNKN---VVTREHMD----KMKNGCVVCNMGHS  198 (258)
Q Consensus       163 ~~aDvvi~~~~~~~---~i~~~~l~----~~k~g~~ivnvg~~  198 (258)
                      +++|+|++|+....   ++. +...    .++++.+++++..+
T Consensus       102 ~~aDvVilav~~~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~G  143 (375)
T 1yj8_A          102 NDADLLIFIVPCQYLESVLA-SIKESESIKIASHAKAISLTKG  143 (375)
T ss_dssp             TTCSEEEECCCHHHHHHHHH-HHTC---CCCCTTCEEEECCCS
T ss_pred             cCCCEEEEcCCHHHHHHHHH-HHhhhhhccCCCCCEEEEeCCc
Confidence            89999999975432   221 2223    56778999998766

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.99  E-value=3.7e-05  Score=68.24  Aligned_cols=113  Identities=13%  Similarity=0.076  Sum_probs=73.3

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC---hhhHHHHHh-----CCC--c---ccCH---HHHHHhCC
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID---PICALQACM-----DGF--S---VVKL---NEVIRTVD  166 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~---~~~~~~a~~-----~g~--~---~~~l---~e~~~~aD  166 (258)
                      +.++.|++++|+|+|.+|+.++..|...|+ +|++++|+   ..+.+...+     .+.  .   ..++   .+.+.++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            456789999999999999999999999998 79999999   555443211     122  1   1233   45678899


Q ss_pred             eeeeccCcc--ccccHH---HHhcCCCCcEEEecCCCC-hhhch-hhhcCCCceeee
Q psy16115        167 IVVTATGNK--NVVTRE---HMDKMKNGCVVCNMGHSN-TEIDV-NSLRTPDLTWEK  216 (258)
Q Consensus       167 vvi~~~~~~--~~i~~~---~l~~~k~g~~ivnvg~~~-~~~~~-~~l~~~~i~~~~  216 (258)
                      +||.|+...  ..-...   ..+.++++.++.|+--.+ +..++ .+-+.|.-.+.|
T Consensus       223 iIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~~G  279 (312)
T 3t4e_A          223 ILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDG  279 (312)
T ss_dssp             EEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHHHTTCEEECH
T ss_pred             EEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCeEECc
Confidence            999986321  100000   124578899999987663 33344 344444433333

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.98  E-value=3.4e-05  Score=71.45  Aligned_cols=108  Identities=15%  Similarity=0.159  Sum_probs=78.8

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEe----CC----hh-h---HH-----HHHhCCC--cccCHHHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITE----ID----PI-C---AL-----QACMDGF--SVVKLNEV  161 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d----~~----~~-~---~~-----~a~~~g~--~~~~l~e~  161 (258)
                      +..+.+++++|+|+|..|+.++..|...|+   +|+++|    |+    .. +   +.     .+.....  ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            456789999999999999999999999998   699999    76    22 1   11     0111111  13467888


Q ss_pred             HHhCCeeeeccCcc-ccccHHHHhcCCCCcEEEecCCCChhhchh-hhcCCC
Q psy16115        162 IRTVDIVVTATGNK-NVVTREHMDKMKNGCVVCNMGHSNTEIDVN-SLRTPD  211 (258)
Q Consensus       162 ~~~aDvvi~~~~~~-~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~-~l~~~~  211 (258)
                      ++++|++|.++... +++.++.++.|+++.++.+++.+..+.+.+ +.+.|.
T Consensus       261 l~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDLynP~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANPVPEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEECCSSSCSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCccCCCChHHHHhcCCCCEEEECCCCCCcchHHHHHHcCC
Confidence            99999999998764 788877888899999999996664455444 333343

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=97.98  E-value=1.5e-05  Score=79.13  Aligned_cols=87  Identities=17%  Similarity=0.255  Sum_probs=66.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|.|+ |.||+..++.+|..|++|++.+.++ +.+ ..+.|.+.      .++.+.+.      +.|+|+.+.+.
T Consensus       345 ~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~-~l~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg  422 (795)
T 3slk_A          345 PGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQ-AVELSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAG  422 (795)
T ss_dssp             TTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGG-GSCSCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCT
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhh-hhhcChhheeecCChhHHHHHHHHcCCCCeEEEEECCCc
Confidence            7999999996 9999999999999999999988655 322 22355432      23444432      48999999865


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       ..+ .+.++.++++++++.+|..
T Consensus       423 -~~~-~~~l~~l~~~Gr~v~iG~~  444 (795)
T 3slk_A          423 -EFA-DASLRMLPRGGRFLELGKT  444 (795)
T ss_dssp             -TTT-HHHHTSCTTCEEEEECCST
T ss_pred             -HHH-HHHHHHhcCCCEEEEeccc
Confidence             455 4899999999999999975

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.97  E-value=3.5e-05  Score=67.46  Aligned_cols=108  Identities=16%  Similarity=0.171  Sum_probs=72.9

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcccCHHHH--HHhCCeeeeccCc--cc--
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVVKLNEV--IRTVDIVVTATGN--KN--  176 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~~l~e~--~~~aDvvi~~~~~--~~--  176 (258)
                      +.++.|++++|+|+|.+|+.++..|...|+ +|++++|++++.+... ..+...+++++  + ++|+||.|+..  ..  
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La-~~~~~~~~~~l~~l-~~DivInaTp~Gm~~~~  194 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIY-GEFKVISYDELSNL-KGDVIINCTPKGMYPKE  194 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHC-TTSEEEEHHHHTTC-CCSEEEECSSTTSTTST
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HhcCcccHHHHHhc-cCCEEEECCccCccCCC
Confidence            456789999999999999999999999998 8999999998764322 22222233222  3 79999998622  11  


Q ss_pred             ---cccHHHHhcCCCCcEEEecCCCC-hhhch-hhhcCCCceeee
Q psy16115        177 ---VVTREHMDKMKNGCVVCNMGHSN-TEIDV-NSLRTPDLTWEK  216 (258)
Q Consensus       177 ---~i~~~~l~~~k~g~~ivnvg~~~-~~~~~-~~l~~~~i~~~~  216 (258)
                         .+..+   .++++.+++|+.-.+ +..++ .+-+.|.-.+.|
T Consensus       195 ~~~pi~~~---~l~~~~~v~DlvY~P~~T~ll~~A~~~G~~~~~G  236 (282)
T 3fbt_A          195 GESPVDKE---VVAKFSSAVDLIYNPVETLFLKYARESGVKAVNG  236 (282)
T ss_dssp             TCCSSCHH---HHTTCSEEEESCCSSSSCHHHHHHHHTTCEEECS
T ss_pred             ccCCCCHH---HcCCCCEEEEEeeCCCCCHHHHHHHHCcCeEeCc
Confidence               24433   457899999997662 33444 344444433444

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.94  E-value=5.6e-06  Score=72.56  Aligned_cols=88  Identities=16%  Similarity=0.109  Sum_probs=63.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-----C-CEEEEEeCChhhHHHHHh-CCCccc--------------CHHHHHHhCCee
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-----G-CVIYITEIDPICALQACM-DGFSVV--------------KLNEVIRTVDIV  168 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-----G-~~Vi~~d~~~~~~~~a~~-~g~~~~--------------~l~e~~~~aDvv  168 (258)
                      .+|+|||+|.||..++..|...     | .+|+++++ +.+.+...+ .|....              +..+.+..+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            3799999999999999999988     8 89999998 666555555 565422              233556789999


Q ss_pred             eeccCcccccc--HHHHhcCCCCcEEEecCCC
Q psy16115        169 VTATGNKNVVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       169 i~~~~~~~~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++|+....+-.  .+....++++.+++.+..+
T Consensus        88 il~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG  119 (317)
T 2qyt_A           88 LFCTKDYDMERGVAEIRPMIGQNTKILPLLNG  119 (317)
T ss_dssp             EECCSSSCHHHHHHHHGGGEEEEEEEEECSCS
T ss_pred             EEecCcccHHHHHHHHHhhcCCCCEEEEccCC
Confidence            99975554311  1222345678888887666

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.94  E-value=3.6e-06  Score=73.12  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=57.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEE-EEEeCChhhHHHHH-hCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcC-C
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVI-YITEIDPICALQAC-MDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKM-K  187 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~V-i~~d~~~~~~~~a~-~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~-k  187 (258)
                      +|+|||+|.||..+++.+... .+| .++|+++.+..... ..+....+++++++++|+|++|+.... + .+.++.+ +
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~-~~v~~~l~~   80 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-I-KTVANHLNL   80 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-H-HHHHTTTCC
T ss_pred             eEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-H-HHHHHHhcc
Confidence            699999999999999999877 788 58999988765543 345423356666778999999975443 3 3555555 5


Q ss_pred             CCcEEEecCCC
Q psy16115        188 NGCVVCNMGHS  198 (258)
Q Consensus       188 ~g~~ivnvg~~  198 (258)
                      ++.++++++.+
T Consensus        81 ~~~ivi~~s~~   91 (276)
T 2i76_A           81 GDAVLVHCSGF   91 (276)
T ss_dssp             SSCCEEECCSS
T ss_pred             CCCEEEECCCC
Confidence            78899998755

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=97.92  E-value=2.1e-05  Score=77.36  Aligned_cols=91  Identities=18%  Similarity=0.249  Sum_probs=63.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCC-------------c-ccCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGF-------------S-VVKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~-------------~-~~~l~e~~~~  164 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|++++..+.+..           .|.             . ..++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            68999999999999999999999999999999887654321           221             1 1234 45788


Q ss_pred             CCeeeeccCcccc----ccHHHHhcCCCCcEEEecCCC-Chh
Q psy16115        165 VDIVVTATGNKNV----VTREHMDKMKNGCVVCNMGHS-NTE  201 (258)
Q Consensus       165 aDvvi~~~~~~~~----i~~~~l~~~k~g~~ivnvg~~-~~~  201 (258)
                      +|+||+|.....-    +-.+..+.++++++++....+ +..
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~  433 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN  433 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH
Confidence            9999999643321    222444568999988544333 443

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.90  E-value=2.1e-05  Score=69.71  Aligned_cols=92  Identities=15%  Similarity=0.242  Sum_probs=64.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------------cCHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------------~~l~e~~~~aDvvi~~~  172 (258)
                      ....+|+|||+|.||..+|..|...|.+|+++ +++++.+...+.|...              .+.++ +..+|+|++|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            46789999999999999999999999999999 8877765554444221              23433 57899999997


Q ss_pred             Ccccccc--HHHHhcCCCCcEEEecCCC-Ch
Q psy16115        173 GNKNVVT--REHMDKMKNGCVVCNMGHS-NT  200 (258)
Q Consensus       173 ~~~~~i~--~~~l~~~k~g~~ivnvg~~-~~  200 (258)
                      ....+-.  ++.-..++++.+++.+..| +.
T Consensus        95 k~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~  125 (318)
T 3hwr_A           95 KSTDTQSAALAMKPALAKSALVLSLQNGVEN  125 (318)
T ss_dssp             CGGGHHHHHHHHTTTSCTTCEEEEECSSSSH
T ss_pred             ccccHHHHHHHHHHhcCCCCEEEEeCCCCCc
Confidence            5543211  1223356788899888777 44

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.90  E-value=2.9e-05  Score=76.42  Aligned_cols=127  Identities=22%  Similarity=0.249  Sum_probs=79.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---------------CC-------cccCHHHHHHhCCe
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD---------------GF-------SVVKLNEVIRTVDI  167 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---------------g~-------~~~~l~e~~~~aDv  167 (258)
                      ++|+|+|+|.||..+|..+...|.+|+++|++++.+..+.+.               ..       ...+..+.++++|+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl  396 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL  396 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence            799999999999999999999999999999998765443221               00       11122334678999


Q ss_pred             eeeccCccccccH----HHHhcCCCCcEEE-ecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        168 VVTATGNKNVVTR----EHMDKMKNGCVVC-NMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       168 vi~~~~~~~~i~~----~~l~~~k~g~~iv-nvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      ||++.--.--+..    +.-+.+++++++. |+|.-+...+.+.+...+ ++.+.+     |..|...+   +.+.+|.+
T Consensus       397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~-r~ig~H-----FfnP~~~m---~LVEvi~g  467 (742)
T 3zwc_A          397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQ-LVIGTH-----FFSPAHVM---RLLEVIPS  467 (742)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGG-GEEEEE-----CCSSTTTC---CEEEEEEC
T ss_pred             EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCcc-cccccc-----ccCCCCCC---ceEEEecC
Confidence            9999532222222    3345679999984 555446655555444322 344443     33333333   45666666


Q ss_pred             CCh
Q psy16115        243 PKS  245 (258)
Q Consensus       243 ~~~  245 (258)
                      ++.
T Consensus       468 ~~T  470 (742)
T 3zwc_A          468 RYS  470 (742)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            653

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.90  E-value=1.8e-05  Score=70.59  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=62.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------------cCHHHHHHhCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------------VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------------~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..+|+|||+|.||..+|..|...|.+|++++++ .+.+...+.|...              .++++ +..+|+|++|+.+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            368999999999999999999999999999985 4444444555421              24554 5789999999755


Q ss_pred             cccccHHHHh----cCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMD----KMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~----~~k~g~~ivnvg~~  198 (258)
                      .. +. +.++    .++++.+++.+..|
T Consensus        81 ~~-~~-~~~~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 PA-LE-SVAAGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             HH-HH-HHHGGGSSSCCTTCEEEECCSS
T ss_pred             hh-HH-HHHHHHHhhCCCCCEEEEECCC
Confidence            42 21 3333    45678888876655

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.89  E-value=1.5e-05  Score=67.48  Aligned_cols=91  Identities=20%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH-HHHhC-CCccc--C-HHHHHHhCCeeeeccCccccccH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL-QACMD-GFSVV--K-LNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~-g~~~~--~-l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      ++.|++|+|+|.|.+|...++.|...|++|++++++..... ...+. ++...  . .++.+.++|+||.+|+.+. +|.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~-~N~  106 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQA-VNK  106 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTH-HHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHH-HHH
Confidence            57999999999999999999999999999999987654322 21122 23211  1 1334668999999987664 454


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+..+ ..+.||+...
T Consensus       107 ~I~~~ak-~gi~VNvvD~  123 (223)
T 3dfz_A          107 FVKQHIK-NDQLVNMASS  123 (223)
T ss_dssp             HHHHHSC-TTCEEEC---
T ss_pred             HHHHHHh-CCCEEEEeCC
Confidence            5555556 6788888643

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.83  E-value=1.7e-05  Score=67.26  Aligned_cols=80  Identities=25%  Similarity=0.297  Sum_probs=60.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEE-EEEeCChhhHHHHHhCCCcccCHHHHH-HhCCeeeeccCccccccHHHHhcCCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVI-YITEIDPICALQACMDGFSVVKLNEVI-RTVDIVVTATGNKNVVTREHMDKMKN  188 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~V-i~~d~~~~~~~~a~~~g~~~~~l~e~~-~~aDvvi~~~~~~~~i~~~~l~~~k~  188 (258)
                      +|+|||+|.||+.+++.+...|.++ .++|+++. ..   .   .+.++++++ .++|+|++|+.+.... +.....++.
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~---~---~~~~~~~l~~~~~DvVv~~~~~~~~~-~~~~~~l~~   73 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HE---K---MVRGIDEFLQREMDVAVEAASQQAVK-DYAEKILKA   73 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CT---T---EESSHHHHTTSCCSEEEECSCHHHHH-HHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hh---h---hcCCHHHHhcCCCCEEEECCCHHHHH-HHHHHHHHC
Confidence            7999999999999999998889986 68998752 21   1   345788888 6899999998655333 244556778


Q ss_pred             CcEEEecCCC
Q psy16115        189 GCVVCNMGHS  198 (258)
Q Consensus       189 g~~ivnvg~~  198 (258)
                      |..+++....
T Consensus        74 G~~vv~~~~~   83 (236)
T 2dc1_A           74 GIDLIVLSTG   83 (236)
T ss_dssp             TCEEEESCGG
T ss_pred             CCcEEEECcc
Confidence            8888877655

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.82  E-value=3.4e-05  Score=68.29  Aligned_cols=99  Identities=10%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc----------------ccCHHHHHHhCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS----------------VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~----------------~~~l~e~~~~aDvvi~~~~  173 (258)
                      .+|+|+|+|.||..+|..|...|.+|+++++++.  +...+.|..                ..+++++.+.+|+|++|+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDY--ETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTH--HHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChH--HHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            5899999999999999999999999999999873  222222221                1234555457999999964


Q ss_pred             cccccc--HHHHhcCCCCcEEEecCCC-C-hhhchhhhcCC
Q psy16115        174 NKNVVT--REHMDKMKNGCVVCNMGHS-N-TEIDVNSLRTP  210 (258)
Q Consensus       174 ~~~~i~--~~~l~~~k~g~~ivnvg~~-~-~~~~~~~l~~~  210 (258)
                      ...+-.  ++.-..++++..++.+.-| + .+.+.+.+...
T Consensus        81 ~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~  121 (320)
T 3i83_A           81 VVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDN  121 (320)
T ss_dssp             CCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTS
T ss_pred             CCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCC
Confidence            443321  1333456788888888777 3 44444444433

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.78  E-value=4.7e-05  Score=67.11  Aligned_cols=87  Identities=14%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHHHHH-hC---------CCc--ccCHHHHHHhCCeeeeccCcc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQAC-MD---------GFS--VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~-~~---------g~~--~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      .+|+|||+|.||..++..|...|  .+|+++|+++.+.+... ..         ...  ..++ +.++++|+|+++.+.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            47999999999999999998888  58999999987654322 11         122  2345 6678999999997654


Q ss_pred             cc-------------------ccHHHHh---cCCCCcEEEecCCC
Q psy16115        176 NV-------------------VTREHMD---KMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~-------------------i~~~~l~---~~k~g~~ivnvg~~  198 (258)
                      ..                   + .+.++   ...+++++++++.+
T Consensus        81 ~~~~~~~g~~r~~l~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp  124 (309)
T 1hyh_A           81 KLQQDNPTGDRFAELKFTSSMV-QSVGTNLKESGFHGVLVVISNP  124 (309)
T ss_dssp             GGTC-------CTTHHHHHHHH-HHHHHHHHHTTCCSEEEECSSS
T ss_pred             ccCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCcEEEEEcCc
Confidence            32                   1 13332   23567888887766

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.76  E-value=5.1e-05  Score=66.90  Aligned_cols=95  Identities=13%  Similarity=0.089  Sum_probs=65.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc---------------cCHHHHHHhCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV---------------VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~---------------~~l~e~~~~aDvvi~~~~~  174 (258)
                      .+|+|||+|.||..++..|...|.+|+++++++.  +...+.|...               .+.+ .+..+|+|++|+..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~--~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~vilavk~   79 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDY--EAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDLVLVGLKT   79 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTH--HHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSEEEECCCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcH--HHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCEEEEecCC
Confidence            4799999999999999999999999999999862  3333444321               1333 36789999999644


Q ss_pred             cc---cccHHHHhcCCCCcEEEecCCC-C-hhhchhhhc
Q psy16115        175 KN---VVTREHMDKMKNGCVVCNMGHS-N-TEIDVNSLR  208 (258)
Q Consensus       175 ~~---~i~~~~l~~~k~g~~ivnvg~~-~-~~~~~~~l~  208 (258)
                      ..   ++. +.-..++++..++.+.-| + .+.+.+.+.
T Consensus        80 ~~~~~~l~-~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~  117 (312)
T 3hn2_A           80 FANSRYEE-LIRPLVEEGTQILTLQNGLGNEEALATLFG  117 (312)
T ss_dssp             GGGGGHHH-HHGGGCCTTCEEEECCSSSSHHHHHHHHTC
T ss_pred             CCcHHHHH-HHHhhcCCCCEEEEecCCCCcHHHHHHHCC
Confidence            43   332 333457788899888777 4 333434443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.76  E-value=6.6e-05  Score=58.97  Aligned_cols=87  Identities=14%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh-hhHHH---HHhCCCcc-----cC---HHHH-HHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP-ICALQ---ACMDGFSV-----VK---LNEV-IRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~-~~~~~---a~~~g~~~-----~~---l~e~-~~~aDvvi~~~~~  174 (258)
                      ..+++.|+|+|.+|+.+++.|...|.+|+++|+++ .+...   ....|...     .+   +.+. +.++|.|+.+++.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            35789999999999999999999999999999974 43222   22334332     12   3333 5679999998755


Q ss_pred             cc--cccHHHHhcCCCCcEEEe
Q psy16115        175 KN--VVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       175 ~~--~i~~~~l~~~k~g~~ivn  194 (258)
                      ..  ..-....+.+.+...++.
T Consensus        82 d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           82 DADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             HHHHHHHHHHHHHHTSSSCEEE
T ss_pred             hHHHHHHHHHHHHHCCCCEEEE
Confidence            42  111233444534444443

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.74  E-value=7.2e-05  Score=66.29  Aligned_cols=65  Identities=23%  Similarity=0.308  Sum_probs=52.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCcccCHHHHHH--hCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFSVVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      .+|+|||+|.||+..+..++.. +.+++ ++|+++.+... +.+.|+.+.++++++.  +.|+|++|+.+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~   73 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPT   73 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCG
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCc
Confidence            4899999999999999999886 67765 69999987654 4456766678999998  78999998643

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.74  E-value=7.2e-05  Score=67.27  Aligned_cols=65  Identities=25%  Similarity=0.281  Sum_probs=53.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHHHHhCCCc-ccCHHHHHH--hCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~a~~~g~~-~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      .+|+|||+|.||+..+..++.. +++++ ++|+++.+...+.+.|+. +.++++++.  +.|+|++|+.+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~   75 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPN   75 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence            5899999999999999999887 67755 679999887666667765 458999998  68999998643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.70  E-value=6.5e-05  Score=69.17  Aligned_cols=90  Identities=14%  Similarity=0.251  Sum_probs=63.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHH---HH-HHhCCeeeeccCcccc--
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLN---EV-IRTVDIVVTATGNKNV--  177 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~---e~-~~~aDvvi~~~~~~~~--  177 (258)
                      +.+|.|+|+|.+|+.+++.|+..|.+|+++|.++.+...+...|+...     +.+   ++ +.++|+|+.+++....  
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            467999999999999999999999999999999999887777776532     222   22 3568999998754321  


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .-....+.+.+...++--.+.
T Consensus        84 ~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           84 QLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             HHHHHHHHHCTTCEEEEEESS
T ss_pred             HHHHHHHHhCCCCeEEEEECC
Confidence            112344555666555444433

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.70  E-value=6.4e-05  Score=68.53  Aligned_cols=85  Identities=12%  Similarity=0.089  Sum_probs=60.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHh-CCCEEEEEe---CChhhHHHHHh-CC---------C-----------cccCHHHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKG-LGCVIYITE---IDPICALQACM-DG---------F-----------SVVKLNEVIRT  164 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~-~G~~Vi~~d---~~~~~~~~a~~-~g---------~-----------~~~~l~e~~~~  164 (258)
                      .+|+|||+|.||..+|..|.. .|.+|+++|   +++++...+.. .+         .           ...++++.++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            379999999999999999977 599999999   76666554222 22         1           11257778889


Q ss_pred             CCeeeeccCccc---cccHHHHhcCCCCcEEEec
Q psy16115        165 VDIVVTATGNKN---VVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       165 aDvvi~~~~~~~---~i~~~~l~~~k~g~~ivnv  195 (258)
                      +|+|++|+.+..   ++ ++.-..++++.+|+..
T Consensus        83 aD~Vilav~~~~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFAHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGGHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHHHHHHH-HHHHhhCCCCcEEEEc
Confidence            999999975543   22 1233346778888874

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.70  E-value=3.7e-05  Score=65.42  Aligned_cols=90  Identities=9%  Similarity=0.073  Sum_probs=58.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHHHhc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHMDK  185 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~l~~  185 (258)
                      ..+|+|||+|.||..+++.|+..|.+|+++|+.                 ++ ++++|  ++|+...   .++ .+....
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-----------------~~-~~~aD--ilavP~~ai~~vl-~~l~~~   64 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-----------------ED-IRDFE--LVVIDAHGVEGYV-EKLSAF   64 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-----------------GG-GGGCS--EEEECSSCHHHHH-HHHHTT
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-----------------HH-hccCC--EEEEcHHHHHHHH-HHHHHh
Confidence            358999999999999999999999999999872                 12 46789  4443222   233 244556


Q ss_pred             CCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccC
Q psy16115        186 MKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       186 ~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      ++++.++++++.. ..++.-..... .....+.+|.
T Consensus        65 l~~g~ivvd~sgs~~~~vl~~~~~~-g~~fvg~HPm   99 (232)
T 3dfu_A           65 ARRGQMFLHTSLTHGITVMDPLETS-GGIVMSAHPI   99 (232)
T ss_dssp             CCTTCEEEECCSSCCGGGGHHHHHT-TCEEEEEEEE
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHhC-CCcEEEeeeC
Confidence            7899999997533 44433332222 3344444443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.66  E-value=0.00014  Score=64.87  Aligned_cols=90  Identities=13%  Similarity=0.069  Sum_probs=63.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHh-------CC----Ccc-cCHHHHHHhCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACM-------DG----FSV-VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~-------~g----~~~-~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..+|+|+|+|.+|..+|..|...|. +|+++|+++++++. +..       .+    +.. .++++.++++|+|+++.++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            4689999999999999999998887 89999999876543 111       11    112 4677789999999998643


Q ss_pred             c---cc-------c---------cHHH---HhcCCCCcEEEecCCC
Q psy16115        175 K---NV-------V---------TREH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~---~~-------i---------~~~~---l~~~k~g~~ivnvg~~  198 (258)
                      +   +.       .         -.+.   +....|++++++++.+
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP  134 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  134 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCc
Confidence            3   11       0         0122   2333588999998766

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.61  E-value=0.00011  Score=65.15  Aligned_cols=87  Identities=17%  Similarity=0.252  Sum_probs=59.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHh---C------C--CcccCHHHHHHhCCeeeeccCcccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM---D------G--FSVVKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~---~------g--~~~~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      +|+|||+|.||..++..+...|.  +|+++|+++.+.+....   .      .  +...+ .+.++++|+|+++.+.+..
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~~   80 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQK   80 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCCC
Confidence            79999999999999999998888  89999999876543211   1      1  11223 3457889999999654321


Q ss_pred             --------------ccHHHHhcC---CCCcEEEecCCC
Q psy16115        178 --------------VTREHMDKM---KNGCVVCNMGHS  198 (258)
Q Consensus       178 --------------i~~~~l~~~---k~g~~ivnvg~~  198 (258)
                                    +-.+.++.+   .+++++++++.+
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp  118 (319)
T 1a5z_A           81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (319)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence                          012333332   578899888766

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.60  E-value=0.00016  Score=67.13  Aligned_cols=91  Identities=18%  Similarity=0.173  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------------------CC-Cc-ccCHHHHHHhCC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------------------DG-FS-VVKLNEVIRTVD  166 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------------------~g-~~-~~~l~e~~~~aD  166 (258)
                      .-.+++|||+|-+|..+|..+...|.+|+++|+++.+.+....                   .| .. ..+.++.++.+|
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            3479999999999999999999999999999999887543211                   11 11 235677788899


Q ss_pred             eeeeccCcccc---------cc---HHHHhcCC---CCcEEEecCCC
Q psy16115        167 IVVTATGNKNV---------VT---REHMDKMK---NGCVVCNMGHS  198 (258)
Q Consensus       167 vvi~~~~~~~~---------i~---~~~l~~~k---~g~~ivnvg~~  198 (258)
                      ++|+|.+|+--         +.   ...-+.++   ++.++|.-|.-
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTV  146 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTV  146 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCC
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            99999765421         11   01122343   57788887764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.59  E-value=9.1e-05  Score=65.54  Aligned_cols=89  Identities=10%  Similarity=0.073  Sum_probs=61.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHH-Hh-----------CCCcc-cCHHHHHHhCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CM-----------DGFSV-VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a-~~-----------~g~~~-~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..+|+|||+|.||..+|..+...|. +|+++|+++++++.. ..           ..+.. .++ +.++++|+|+++.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999998898 999999998765431 10           01222 345 667899999999743


Q ss_pred             ccc--------------ccHHH---HhcCCCCcEEEecCCC
Q psy16115        175 KNV--------------VTREH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~--------------i~~~~---l~~~k~g~~ivnvg~~  198 (258)
                      +..              +-.+.   ++...+++++++++.+
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp  123 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNP  123 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence            210              01122   2233578999998876

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.58  E-value=0.0001  Score=65.70  Aligned_cols=66  Identities=20%  Similarity=0.225  Sum_probs=52.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc-ccCHHHHHH--hCCeeeeccCcc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~-~~~l~e~~~--~aDvvi~~~~~~  175 (258)
                      .+|+|||+|.||+..++.++.. +.+++ ++|+++.+... +.+.|.. +.++++++.  +.|+|++|+.+.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~   76 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTS   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCch
Confidence            4899999999999999999886 67755 78999988654 4445654 458999988  789999986443

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.57  E-value=0.0002  Score=63.86  Aligned_cols=89  Identities=15%  Similarity=0.183  Sum_probs=61.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHH-h----------C-CCcc-cCHHHHHHhCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQAC-M----------D-GFSV-VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~-~----------~-g~~~-~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..+|+|+|+|.+|..+|..+...|. +|+++|+++++++... .          . .+.. .++ +.+++||+|+++.+.
T Consensus        14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~   92 (328)
T 2hjr_A           14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV   92 (328)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence            3689999999999999999999998 9999999987654311 1          0 1122 345 678899999999644


Q ss_pred             cc---c-----------ccHHH---HhcCCCCcEEEecCCC
Q psy16115        175 KN---V-----------VTREH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~---~-----------i~~~~---l~~~k~g~~ivnvg~~  198 (258)
                      +.   .           +-.+.   ++...|++++++++.+
T Consensus        93 p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  133 (328)
T 2hjr_A           93 PRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNP  133 (328)
T ss_dssp             CCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            32   1           01122   2333588999888765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.56  E-value=0.00012  Score=61.00  Aligned_cols=65  Identities=15%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-HhCCCcc-----cC---HHHH-HHhCCeeeeccCcc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSV-----VK---LNEV-IRTVDIVVTATGNK  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-~~~g~~~-----~~---l~e~-~~~aDvvi~~~~~~  175 (258)
                      +|+|+|+|.+|+.+++.|...|.+|+++|+++++.... ...+...     .+   +++. ++++|+++.+++..
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   76 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD   76 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc
Confidence            68999999999999999999999999999999887653 3345432     22   2222 45789999987554

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.56  E-value=0.00015  Score=64.46  Aligned_cols=82  Identities=15%  Similarity=0.194  Sum_probs=58.6

Q ss_pred             CEEEEEcCchHHHHHHHHHH-hC-CCE-EEEEeCChhhHHH-HHhCCC-c-ccCHHHHHH--hCCeeeeccCccccccHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLK-GL-GCV-IYITEIDPICALQ-ACMDGF-S-VVKLNEVIR--TVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~-~~-G~~-Vi~~d~~~~~~~~-a~~~g~-~-~~~l~e~~~--~aDvvi~~~~~~~~i~~~  181 (258)
                      .+|+|||+|.||+..++.++ .. |++ +.++|+++.+.+. +.+.|. . +.++++++.  ++|+|++|+.+..-.. .
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~-~   87 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE-M   87 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH-H
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH-H
Confidence            58999999999999999988 54 677 4578999987654 344566 2 457889887  6899999975543332 3


Q ss_pred             HHhcCCCCcEE
Q psy16115        182 HMDKMKNGCVV  192 (258)
Q Consensus       182 ~l~~~k~g~~i  192 (258)
                      ..+.++.|..+
T Consensus        88 ~~~al~~G~~v   98 (346)
T 3cea_A           88 TIYAMNAGLNV   98 (346)
T ss_dssp             HHHHHHTTCEE
T ss_pred             HHHHHHCCCEE
Confidence            44455666533

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.55  E-value=0.00027  Score=65.31  Aligned_cols=94  Identities=17%  Similarity=0.336  Sum_probs=63.6

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeC----------ChhhHHHHHh-CC-------CcccCHHHHHH
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACM-DG-------FSVVKLNEVIR  163 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~----------~~~~~~~a~~-~g-------~~~~~l~e~~~  163 (258)
                      .+.++.|++|+|.|+|.+|+.+++.|...|++|+ +.|.          +...+...++ .|       .+..+.++++.
T Consensus       229 ~g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~  308 (440)
T 3aog_A          229 IGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG  308 (440)
T ss_dssp             HTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT
T ss_pred             cCCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc
Confidence            3557899999999999999999999999999977 6666          3444333222 22       23334556554


Q ss_pred             -hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        164 -TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       164 -~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       .+|+++.|+ +.+.++.+....++ ..+|+-.+-+
T Consensus       309 ~~~DIlvPcA-~~n~i~~~na~~l~-ak~VvEgAN~  342 (440)
T 3aog_A          309 LPVEFLVPAA-LEKQITEQNAWRIR-ARIVAEGANG  342 (440)
T ss_dssp             CCCSEEEECS-SSSCBCTTTGGGCC-CSEEECCSSS
T ss_pred             CCCcEEEecC-CcCccchhhHHHcC-CcEEEecCcc
Confidence             699999996 45667767777774 2344443333

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.54  E-value=0.00014  Score=65.16  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=51.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC--CCEEE-EEeCChhhHHH-HHhCCCc-ccCHHHHHH--hCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL--GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~--G~~Vi-~~d~~~~~~~~-a~~~g~~-~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      .+|+|||+|.||...+..++..  +.+++ ++|+++.+... +.+.|+. +.++++++.  +.|+|++|+.+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   85 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPS   85 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCc
Confidence            5899999999999999999887  67754 78999988654 3344664 458999987  68999998643

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.53  E-value=0.00017  Score=64.25  Aligned_cols=66  Identities=20%  Similarity=0.336  Sum_probs=51.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCC--cccCHHHHHH--hCCeeeeccCcc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGF--SVVKLNEVIR--TVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~--~~~~l~e~~~--~aDvvi~~~~~~  175 (258)
                      .+|+|||+|.||...+..++.. +.+++ ++|+++.+... +...+.  .+.++++++.  +.|+|++|+.+.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   75 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTN   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCc
Confidence            3799999999999999999875 56755 68999887654 334454  3568999998  799999997444

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.53  E-value=0.00014  Score=65.03  Aligned_cols=65  Identities=9%  Similarity=0.015  Sum_probs=51.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc-ccCHHHHHH--hCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~-~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      .+|+|||+|.||+..+..++.. |.+++ ++|+++.+... +.+.|+. +.++++++.  +.|+|++|+.+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~   76 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPN   76 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCT
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCCh
Confidence            5899999999999999999887 77854 78999987654 3344654 568999994  58999998643

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.52  E-value=0.00022  Score=62.97  Aligned_cols=64  Identities=19%  Similarity=0.274  Sum_probs=49.3

Q ss_pred             EEEEEcCchHHHHH-HHHHHhCCCEEE-EEeCChhhHHH-HHhCCCc--ccCHHHHHH--hCCeeeeccCc
Q psy16115        111 QVVLCGYGEVGKGC-CQSLKGLGCVIY-ITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       111 ~V~IiG~G~IG~~~-a~~l~~~G~~Vi-~~d~~~~~~~~-a~~~g~~--~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      +|+|||+|.||+.. +..++..|.+++ ++|+++.+... +.+.|..  +.+++++++  ++|+|++|+.+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~   72 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTN   72 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCG
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence            69999999999997 777766778754 78999887654 4455653  457889887  48999998643

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.52  E-value=0.00015  Score=63.81  Aligned_cols=89  Identities=18%  Similarity=0.180  Sum_probs=58.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--CCC------ccc-CHHHHHHhCCeeeeccCcccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DGF------SVV-KLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~g~------~~~-~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      .+|+|+|+|.+|..++..+...|.  +|+++|+++.++.. +..  ...      ... +..+.++++|+|+++.+.+..
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~~   80 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQK   80 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC-----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence            379999999999999999999998  89999999876532 221  111      111 223567899999999754321


Q ss_pred             --------------ccHH---HHhcCCCCcEEEecCCC
Q psy16115        178 --------------VTRE---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 --------------i~~~---~l~~~k~g~~ivnvg~~  198 (258)
                                    +-.+   .+....+++++++++.+
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP  118 (304)
T 2v6b_A           81 PGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNP  118 (304)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSS
T ss_pred             CCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence                          0012   23333688999987766

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.52  E-value=0.00019  Score=63.15  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHH-HHH--hCCC------c--ccCHHHHHHhCCeeeeccCcc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QAC--MDGF------S--VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~-~a~--~~g~------~--~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      ..+|+|||+|.||..++..|...|.  +|+++|+++.+.. .+.  ..+.      .  ..+-.+.++++|+|+++++.+
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~~   86 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   86 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCCC
Confidence            4689999999999999999999998  8999999986653 111  1221      1  111234567899999997544


Q ss_pred             ccc---------------c--HHHHhcCCCCcEEEecCCC
Q psy16115        176 NVV---------------T--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~i---------------~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..-               .  .+.++...++++++++..+
T Consensus        87 ~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np  126 (319)
T 1lld_A           87 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP  126 (319)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCc
Confidence            311               0  1223323678899988877

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.51  E-value=9.7e-05  Score=65.07  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=59.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccC----------H-HHHHHhCCeeeeccCccccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK----------L-NEVIRTVDIVVTATGNKNVV  178 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~----------l-~e~~~~aDvvi~~~~~~~~i  178 (258)
                      .+|+|||+|.||..++..|. .|.+|+++++++.+.+...+.|.....          . .+....+|+|++|+....+-
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~~~   81 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQLQ   81 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGGHH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHHHH
Confidence            58999999999999999999 899999999998766554444543211          0 23345789999997544321


Q ss_pred             cHHHHhc---CCCCcEEEecCCC
Q psy16115        179 TREHMDK---MKNGCVVCNMGHS  198 (258)
Q Consensus       179 ~~~~l~~---~k~g~~ivnvg~~  198 (258)
                        +.++.   +.++. ++.+.-|
T Consensus        82 --~~l~~l~~~~~~~-ivs~~nG  101 (307)
T 3ego_A           82 --SVFSSLERIGKTN-ILFLQNG  101 (307)
T ss_dssp             --HHHHHTTSSCCCE-EEECCSS
T ss_pred             --HHHHHhhcCCCCe-EEEecCC
Confidence              33333   34555 7777666

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.51  E-value=8.7e-05  Score=57.96  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             cCCCEEEEEcC----chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcc---ccc
Q psy16115        107 FGGKQVVLCGY----GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATGNK---NVV  178 (258)
Q Consensus       107 l~g~~V~IiG~----G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~---~~i  178 (258)
                      +.-++|+|||+    |.+|..+++.++..|.+|+.+|++..+     -.|... .+++++.+..|+++++....   .++
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~-----i~G~~~~~s~~el~~~vDlvii~vp~~~v~~v~   86 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE-----IEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVA   86 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGSCTTCCEEEECSCHHHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe-----ECCeeecCCHHHhCCCCCEEEEEeCHHHHHHHH
Confidence            36789999999    999999999999999987666655322     146553 46888878899999986433   233


Q ss_pred             cHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceee
Q psy16115        179 TREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWE  215 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~  215 (258)
                      . +..+ ...++++++.+.. .+.+.+..+...+.+.
T Consensus        87 ~-~~~~-~g~~~i~~~~~~~-~~~l~~~a~~~Gi~~i  120 (138)
T 1y81_A           87 K-EAVE-AGFKKLWFQPGAE-SEEIRRFLEKAGVEYS  120 (138)
T ss_dssp             H-HHHH-TTCCEEEECTTSC-CHHHHHHHHHHTCEEE
T ss_pred             H-HHHH-cCCCEEEEcCccH-HHHHHHHHHHCCCEEE
Confidence            2 3333 5566777776543 3333444444444443

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.51  E-value=0.00019  Score=62.82  Aligned_cols=82  Identities=6%  Similarity=0.009  Sum_probs=57.7

Q ss_pred             CCEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHH
Q psy16115        109 GKQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHM  183 (258)
Q Consensus       109 g~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l  183 (258)
                      -.+++|||+|.||.. .+..++.. +.+++ ++|+++.+.+. +.+.|+. +.++++++.+.|+|++|+.+..-.. ...
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~-~~~   84 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYE-IIK   84 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHH-HHH
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHH-HHH
Confidence            468999999999996 88878764 67866 79999987654 3344553 5689999999999999975443221 233


Q ss_pred             hcCCCCcE
Q psy16115        184 DKMKNGCV  191 (258)
Q Consensus       184 ~~~k~g~~  191 (258)
                      +.++.|.-
T Consensus        85 ~al~~gk~   92 (308)
T 3uuw_A           85 ILLNLGVH   92 (308)
T ss_dssp             HHHHTTCE
T ss_pred             HHHHCCCc
Confidence            34444433

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.51  E-value=9.6e-05  Score=62.13  Aligned_cols=86  Identities=15%  Similarity=0.341  Sum_probs=58.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-----cCHH---HH-HHhCCeeeeccCccc--
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VKLN---EV-IRTVDIVVTATGNKN--  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-----~~l~---e~-~~~aDvvi~~~~~~~--  176 (258)
                      ..+++.|+|+|.+|+.+++.|...|. |+++|+++.+...+. .++..     .+.+   +. +.++|.++.+++...  
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   85 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET   85 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH
Confidence            45789999999999999999999999 999999988766555 55432     2222   22 457899999875442  


Q ss_pred             cccHHHHhcCCCC-cEEEec
Q psy16115        177 VVTREHMDKMKNG-CVVCNM  195 (258)
Q Consensus       177 ~i~~~~l~~~k~g-~~ivnv  195 (258)
                      ..-....+.+.++ .+++.+
T Consensus        86 ~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           86 IHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             HHHHHHHHHHCSSSEEEEEC
T ss_pred             HHHHHHHHHHCCCCeEEEEE
Confidence            2222445556666 344444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.49  E-value=0.00028  Score=58.91  Aligned_cols=68  Identities=22%  Similarity=0.271  Sum_probs=52.8

Q ss_pred             ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC-cc------cCHHHHHHhCCeeeeccC
Q psy16115        106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SV------VKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~-~~------~~l~e~~~~aDvvi~~~~  173 (258)
                      .+.|++|+|.|. |.||+.+++.|...|++|++++|++.+.......++ ..      ..+.+.+.+.|+|+.+.+
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            468999999997 889999999999999999999999887765544455 32      234566778999999865

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.48  E-value=0.00022  Score=62.00  Aligned_cols=92  Identities=16%  Similarity=0.261  Sum_probs=64.1

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCC-------cccC---HHHHHH-------hCCe
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGF-------SVVK---LNEVIR-------TVDI  167 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~-------~~~~---l~e~~~-------~aDv  167 (258)
                      |+||+++|-|.+. ||+.+|+.|...|++|++.|++.+++++.. +.+.       +..+   .+++++       .-|+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi  106 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDV  106 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            7999999999888 999999999999999999999988765533 2222       1122   222222       3599


Q ss_pred             eeeccCccc------------------------cccHHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKN------------------------VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~------------------------~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++.+.|...                        .+....+..|++++.+||++..
T Consensus       107 LVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~  161 (273)
T 4fgs_A          107 LFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGST  161 (273)
T ss_dssp             EEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             EEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeeh
Confidence            988643110                        0112345678888999999865

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.47  E-value=0.00015  Score=67.82  Aligned_cols=91  Identities=18%  Similarity=0.140  Sum_probs=59.5

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhC-CCEEEEEeCChhhHHHHHh-CCCc-----cc---CHHHHHHhCCeeeeccCc
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGL-GCVIYITEIDPICALQACM-DGFS-----VV---KLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~~a~~-~g~~-----~~---~l~e~~~~aDvvi~~~~~  174 (258)
                      ..+.+++|+|+|+|.+|+.++..|... |.+|++++|++.+.....+ .++.     ..   ++.++++++|+||.|++.
T Consensus        19 ~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~   98 (467)
T 2axq_A           19 GRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPY   98 (467)
T ss_dssp             ----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCG
T ss_pred             cCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCch
Confidence            346889999999999999999999988 6789999999887654322 2322     11   345667789999999754


Q ss_pred             cccccHH-HHhcCCCCcEEEecCC
Q psy16115        175 KNVVTRE-HMDKMKNGCVVCNMGH  197 (258)
Q Consensus       175 ~~~i~~~-~l~~~k~g~~ivnvg~  197 (258)
                      ..  ... ....++.+..+++++.
T Consensus        99 ~~--~~~v~~a~l~~g~~vvd~~~  120 (467)
T 2axq_A           99 TF--HPNVVKSAIRTKTDVVTSSY  120 (467)
T ss_dssp             GG--HHHHHHHHHHHTCEEEECSC
T ss_pred             hh--hHHHHHHHHhcCCEEEEeec
Confidence            31  111 1122345566666654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.47  E-value=0.0002  Score=79.02  Aligned_cols=89  Identities=13%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCCcc------cCHHHHHH------hCCeeee
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFSV------VKLNEVIR------TVDIVVT  170 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~~~------~~l~e~~~------~aDvvi~  170 (258)
                      +|++|+|.|. |.||+.+++.++..|++|++++.++++...+.+    .|.+.      .++.+.+.      +.|+|+.
T Consensus      1667 ~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld 1746 (2512)
T 2vz8_A         1667 PGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLN 1746 (2512)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEE
T ss_pred             CCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhhHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEE
Confidence            7999999985 999999999999999999999988877666554    45432      12333332      3799999


Q ss_pred             ccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        171 ATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       171 ~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.+ ...+. ..++.++++++++.+|..
T Consensus      1747 ~~g-~~~l~-~~l~~L~~~Gr~V~iG~~ 1772 (2512)
T 2vz8_A         1747 SLA-EEKLQ-ASVRCLAQHGRFLEIGKF 1772 (2512)
T ss_dssp             CCC-HHHHH-HHHTTEEEEEEEEECCCH
T ss_pred             CCC-chHHH-HHHHhcCCCcEEEEeecc
Confidence            875 44554 788999999999999864

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.45  E-value=0.00082  Score=58.36  Aligned_cols=92  Identities=17%  Similarity=0.133  Sum_probs=59.8

Q ss_pred             cccCCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----CCCc-----ccC---HHHHHHhCCeeee
Q psy16115        105 VMFGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----DGFS-----VVK---LNEVIRTVDIVVT  170 (258)
Q Consensus       105 ~~l~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----~g~~-----~~~---l~e~~~~aDvvi~  170 (258)
                      .++.|++++|+| .|.||+.++..|...|++|++++|++.+.+...+     .++.     ..+   +.+.+++.|+++.
T Consensus       115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn  194 (287)
T 1lu9_A          115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT  194 (287)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence            346899999999 9999999999999999999999999876543211     1211     112   3445567899988


Q ss_pred             ccCccc-cccHHHHhcCCCCcEEEecC
Q psy16115        171 ATGNKN-VVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       171 ~~~~~~-~i~~~~l~~~k~g~~ivnvg  196 (258)
                      +++... .........+.+...+.++-
T Consensus       195 ~ag~g~~~~~~~~~~~~~~~~~~~dvn  221 (287)
T 1lu9_A          195 AGAIGLELLPQAAWQNESSIEIVADYN  221 (287)
T ss_dssp             CCCTTCCSBCHHHHTTCTTCCEEEECC
T ss_pred             CCCccccCCChhHcCchHHHHHHHHhh
Confidence            875321 12212233345555565553

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.45  E-value=0.00013  Score=62.52  Aligned_cols=69  Identities=22%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh-------------------hhHHHHHh------CCCc--c---
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP-------------------ICALQACM------DGFS--V---  155 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~-------------------~~~~~a~~------~g~~--~---  155 (258)
                      +.+++|+|+|+|.+|..+++.|...|. +++++|++.                   .+.+.+.+      ....  .   
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            578999999999999999999999998 799999887                   44433211      0111  1   


Q ss_pred             -c---CHHHHHHhCCeeeeccCcc
Q psy16115        156 -V---KLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       156 -~---~l~e~~~~aDvvi~~~~~~  175 (258)
                       .   ++++.++++|+|+.|+.+.
T Consensus       109 ~~~~~~~~~~~~~~DvVi~~~d~~  132 (249)
T 1jw9_B          109 LLDDAELAALIAEHDLVLDCTDNV  132 (249)
T ss_dssp             CCCHHHHHHHHHTSSEEEECCSSH
T ss_pred             cCCHhHHHHHHhCCCEEEEeCCCH
Confidence             1   2456778899999997554

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=97.44  E-value=0.00039  Score=63.94  Aligned_cols=94  Identities=17%  Similarity=0.325  Sum_probs=65.2

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEE-EEEeCC----------hhhHHHHHhC-C------CcccCHHHHHH-
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVI-YITEID----------PICALQACMD-G------FSVVKLNEVIR-  163 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~V-i~~d~~----------~~~~~~a~~~-g------~~~~~l~e~~~-  163 (258)
                      .+.++.|+||.|.|+|.+|+.+|+.|...|++| .+.|.+          ...+...++. |      .+..+.++++. 
T Consensus       215 ~g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~  294 (424)
T 3k92_A          215 KGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEK  294 (424)
T ss_dssp             TTCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHS
T ss_pred             cCCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceec
Confidence            356789999999999999999999999999996 467765          4433332222 2      23445566655 


Q ss_pred             hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        164 TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       164 ~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+||++-|+. .+.|+.+....++- .+|+-.+.+
T Consensus       295 ~~DIliPcA~-~n~I~~~~a~~l~a-k~V~EgAN~  327 (424)
T 3k92_A          295 DCDILVPAAI-SNQITAKNAHNIQA-SIVVERANG  327 (424)
T ss_dssp             CCSEEEECSC-SSCBCTTTGGGCCC-SEEECCSSS
T ss_pred             cccEEeecCc-ccccChhhHhhcCc-eEEEcCCCC
Confidence            6999999973 47788777777742 344443333

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.43  E-value=0.00047  Score=59.34  Aligned_cols=43  Identities=16%  Similarity=0.326  Sum_probs=38.7

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++|+||+++|-|.+. ||+.+|+.|...|++|++.|++++++++
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~   48 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAE   48 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            358999999999888 9999999999999999999999877544

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=97.43  E-value=0.00067  Score=62.32  Aligned_cols=84  Identities=19%  Similarity=0.298  Sum_probs=60.7

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHh-CCCEEE-EEeC----------ChhhHHHHHhC-C-------CcccCHHHHH
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKG-LGCVIY-ITEI----------DPICALQACMD-G-------FSVVKLNEVI  162 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~-~G~~Vi-~~d~----------~~~~~~~a~~~-g-------~~~~~l~e~~  162 (258)
                      .+.++.|++|.|.|+|.+|+.+++.|.. .|++|+ +.|.          ++..+...++. +       .+..+.++++
T Consensus       203 ~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil  282 (415)
T 2tmg_A          203 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL  282 (415)
T ss_dssp             TTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHT
T ss_pred             cCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhh
Confidence            4567899999999999999999999998 999977 5665          44444332221 1       2333456655


Q ss_pred             H-hCCeeeeccCccccccHHHHhcCC
Q psy16115        163 R-TVDIVVTATGNKNVVTREHMDKMK  187 (258)
Q Consensus       163 ~-~aDvvi~~~~~~~~i~~~~l~~~k  187 (258)
                      . .+|+++.|+ ..+.++.+....++
T Consensus       283 ~~~~DIliP~A-~~n~i~~~~a~~l~  307 (415)
T 2tmg_A          283 ELDVDILVPAA-LEGAIHAGNAERIK  307 (415)
T ss_dssp             TCSCSEEEECS-STTSBCHHHHTTCC
T ss_pred             cCCCcEEEecC-CcCccCcccHHHcC
Confidence            4 699999997 45677877777774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.43  E-value=0.0011  Score=56.44  Aligned_cols=42  Identities=19%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             ccCCCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +|+||+++|.|++   -||+.+|+.|...|++|++.++++..+++
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~   47 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKE   47 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            4799999999974   49999999999999999999998776543

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.41  E-value=0.00024  Score=65.81  Aligned_cols=95  Identities=15%  Similarity=0.188  Sum_probs=61.8

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEe-C----------ChhhHHHHH---------------hCCCccc
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE-I----------DPICALQAC---------------MDGFSVV  156 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d-~----------~~~~~~~a~---------------~~g~~~~  156 (258)
                      .+.++.|+||+|-|+|.+|..+|+.|...|++|+.++ .          +.+.+....               +.|....
T Consensus       229 ~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~  308 (450)
T 4fcc_A          229 HGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL  308 (450)
T ss_dssp             TTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE
T ss_pred             cCCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe
Confidence            3567899999999999999999999999999977643 2          122211111               1122222


Q ss_pred             CHHHHHH-hCCeeeeccCccccccHHHHhcCCC-Cc-EEEecCCC
Q psy16115        157 KLNEVIR-TVDIVVTATGNKNVVTREHMDKMKN-GC-VVCNMGHS  198 (258)
Q Consensus       157 ~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k~-g~-~ivnvg~~  198 (258)
                      +.++++. .|||++-|. +.+.|+.+..+.++. ++ .+++-+..
T Consensus       309 ~~~~i~~~~~DI~iPcA-l~~~I~~~~a~~L~a~g~k~IaEgAN~  352 (450)
T 4fcc_A          309 EGQQPWSVPVDIALPCA-TQNELDVDAAHQLIANGVKAVAEGANM  352 (450)
T ss_dssp             ETCCGGGSCCSEEEECS-CTTCBCHHHHHHHHHTTCCEEECCSSS
T ss_pred             cCcccccCCccEEeecc-ccccccHHHHHHHHhcCceEEecCCCC
Confidence            2333332 589999986 456788888887764 33 45554444

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.40  E-value=0.00052  Score=60.55  Aligned_cols=87  Identities=13%  Similarity=0.185  Sum_probs=59.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHH---hCC---------Ccc-cCHHHHHHhCCeeeeccCcc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQAC---MDG---------FSV-VKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~---~~g---------~~~-~~l~e~~~~aDvvi~~~~~~  175 (258)
                      +|+|+|+|.+|..++..+...  |.+|+++|+++.+.+...   ...         +.. .+.++ ++++|+|+++.+++
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~p   80 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGLP   80 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCCC
Confidence            799999999999999999874  779999999987654211   111         112 34555 88999999997543


Q ss_pred             c---c-------cc----HHH---HhcCCCCcEEEecCCC
Q psy16115        176 N---V-------VT----REH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~---~-------i~----~~~---l~~~k~g~~ivnvg~~  198 (258)
                      .   .       .|    .+.   +....+++++++++.+
T Consensus        81 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP  120 (310)
T 1guz_A           81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (310)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            2   1       00    122   2223578898888766

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.40  E-value=0.0002  Score=63.52  Aligned_cols=64  Identities=14%  Similarity=0.053  Sum_probs=51.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCC--cccCHHHHHH--hCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGF--SVVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~--~~~~l~e~~~--~aDvvi~~~~  173 (258)
                      .+|+|||+|.||...++.++.. +.+++ ++|+++.+... +.+.+.  .+.++++++.  +.|+|++|+.
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp   76 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTY   76 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCC
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCC
Confidence            5899999999999999999885 56765 68999887654 445566  2568999998  7899999863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.40  E-value=0.00045  Score=61.38  Aligned_cols=89  Identities=13%  Similarity=0.107  Sum_probs=61.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHH-H--hC-------C--Ccc-cCHHHHHHhCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-C--MD-------G--FSV-VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a-~--~~-------g--~~~-~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..+|+|||+|.+|..++..+...|. +|+++|+++.+++.. .  ..       .  +.. .+. +.+++||+|+++.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            3689999999999999999999897 899999998765421 1  11       1  112 355 678899999999643


Q ss_pred             c---cc----------------ccHHHH---hcCCCCcEEEecCCC
Q psy16115        175 K---NV----------------VTREHM---DKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~---~~----------------i~~~~l---~~~k~g~~ivnvg~~  198 (258)
                      +   +.                +-.+.+   +...|++++++++.+
T Consensus        83 p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP  128 (322)
T 1t2d_A           83 TKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  128 (322)
T ss_dssp             SSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             CCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3   21                111222   223588999988765

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.39  E-value=0.00035  Score=60.68  Aligned_cols=86  Identities=19%  Similarity=0.267  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHhCCCccc-CHHHHHHhCCeeeeccCccc--------
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMDGFSVV-KLNEVIRTVDIVVTATGNKN--------  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~~g~~~~-~l~e~~~~aDvvi~~~~~~~--------  176 (258)
                      .+++++|+|+|.+|+.++..|...|+ +|++++|++++.+. +.+.+.... ++.  +.++|+||.|+....        
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~  195 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMD  195 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCC
Confidence            57899999999999999999999998 69999999877543 223343222 222  357999999863221        


Q ss_pred             -cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 -VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 -~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       .+..+   .++++.+++|+...
T Consensus       196 ~~~~~~---~l~~~~~v~DlvY~  215 (271)
T 1npy_A          196 LAFPKA---FIDNASVAFDVVAM  215 (271)
T ss_dssp             CSSCHH---HHHHCSEEEECCCS
T ss_pred             CCCCHH---HcCCCCEEEEeecC
Confidence             13222   34668899999875

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.39  E-value=0.00025  Score=65.92  Aligned_cols=67  Identities=18%  Similarity=0.145  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CC-C-----ccc---CHHHHHHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG-F-----SVV---KLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g-~-----~~~---~l~e~~~~aDvvi~~~~~  174 (258)
                      .+++|+|+|+|.||+.+++.|...|.+|+++|+++.+.....+ .+ .     +..   ++.++++++|+|+.|++.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~   78 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPY   78 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCcc
Confidence            4789999999999999999999999999999999877644322 11 2     122   344667789999998753

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.38  E-value=0.00016  Score=63.90  Aligned_cols=83  Identities=14%  Similarity=0.159  Sum_probs=55.3

Q ss_pred             EEEEEcCchHHH-HHHHHHHhC-CCEEEEEeCChhhHHH-HHhCCCc--ccCHHHHH-HhCCeeeeccCccccccHHHHh
Q psy16115        111 QVVLCGYGEVGK-GCCQSLKGL-GCVIYITEIDPICALQ-ACMDGFS--VVKLNEVI-RTVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       111 ~V~IiG~G~IG~-~~a~~l~~~-G~~Vi~~d~~~~~~~~-a~~~g~~--~~~l~e~~-~~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      +|+|||+|.||+ ..++.++.. +.+++++|+++.+.+. +.+.|..  +.+..+.+ .++|+|++|+.+..-.. ...+
T Consensus         4 ~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~-~~~~   82 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST-LAAF   82 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH-HHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH-HHHH
Confidence            799999999998 488888765 6786699999987654 3445654  34444555 57899999975443221 2333


Q ss_pred             cCCCCc-EEEe
Q psy16115        185 KMKNGC-VVCN  194 (258)
Q Consensus       185 ~~k~g~-~ivn  194 (258)
                      .++.|. +++.
T Consensus        83 al~~Gk~V~~E   93 (323)
T 1xea_A           83 FLHLGIPTFVD   93 (323)
T ss_dssp             HHHTTCCEEEE
T ss_pred             HHHCCCeEEEe
Confidence            445453 4554

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.36  E-value=0.0002  Score=66.72  Aligned_cols=90  Identities=14%  Similarity=0.254  Sum_probs=60.8

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-h-CCCccc--C-HHHHHHhCCeeeeccCccccccH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-M-DGFSVV--K-LNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~-~g~~~~--~-l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      ++.|++|+|+|.|.+|...++.|...|++|+++|.+........ + .++...  . .++.+.++|+|+.+++.+.. |.
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~~~-n~   87 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTV-NQ   87 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHH-HH
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCHHH-HH
Confidence            46899999999999999999999999999999987643322222 1 233221  1 12335689999998866532 44


Q ss_pred             HHHhcCCCCcEEEecC
Q psy16115        181 EHMDKMKNGCVVCNMG  196 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg  196 (258)
                      ...+..+...+.||+.
T Consensus        88 ~i~~~a~~~~i~vn~~  103 (457)
T 1pjq_A           88 RVSDAAESRRIFCNVV  103 (457)
T ss_dssp             HHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHcCCEEEEC
Confidence            4555455555666654

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.36  E-value=0.00014  Score=63.97  Aligned_cols=81  Identities=17%  Similarity=0.342  Sum_probs=49.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHHHHhCCCcc---cCHHHHHHhCCeeeeccCccccccHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQACMDGFSV---VKLNEVIRTVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~a~~~g~~~---~~l~e~~~~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      .+|+|||+|.||+..++.++.. +++++ ++|+++.+...   .|+.+   .++.+. .++|+|++|+.+..-.. ...+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~-~~~~   84 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVER-TALE   84 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHH-HHHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHH-HHHH
Confidence            5899999999999999999874 67866 68998876543   45432   234443 57899999974433221 3334


Q ss_pred             cCCCCcEEEec
Q psy16115        185 KMKNGCVVCNM  195 (258)
Q Consensus       185 ~~k~g~~ivnv  195 (258)
                      .++.|..+++.
T Consensus        85 al~aG~~Vi~e   95 (304)
T 3bio_A           85 ILKKGICTADS   95 (304)
T ss_dssp             HHTTTCEEEEC
T ss_pred             HHHcCCeEEEC
Confidence            45556555553

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.35  E-value=0.0013  Score=60.77  Aligned_cols=109  Identities=14%  Similarity=0.108  Sum_probs=81.7

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCC---EEEEEeCC----hhh--H----------HHHHhCC-CcccCHHHHH
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGC---VIYITEID----PIC--A----------LQACMDG-FSVVKLNEVI  162 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~---~Vi~~d~~----~~~--~----------~~a~~~g-~~~~~l~e~~  162 (258)
                      .+..+...++++.|+|.-|..+++++...|.   +++++|+.    ..|  +          +.+.... -...++.|++
T Consensus       213 ~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav  292 (487)
T 3nv9_A          213 VKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEAC  292 (487)
T ss_dssp             HTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHH
T ss_pred             hCCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHH
Confidence            4567889999999999999999999999998   59999975    222  1          1122221 1345799999


Q ss_pred             HhCCeeeeccCc-cccccHHHHhcCCCCcEEEecCCCChhhchh-hhcCCC
Q psy16115        163 RTVDIVVTATGN-KNVVTREHMDKMKNGCVVCNMGHSNTEIDVN-SLRTPD  211 (258)
Q Consensus       163 ~~aDvvi~~~~~-~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~-~l~~~~  211 (258)
                      +++|+++-++.. ++.++++.++.|.+..+|.-.+.+..|+..+ +.+.|.
T Consensus       293 ~~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLSNPtpEi~pe~A~~~G~  343 (487)
T 3nv9_A          293 VGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCANPVPEIYPYEAKEAGA  343 (487)
T ss_dssp             TTCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECCSSSCSSCHHHHHHTTC
T ss_pred             hcCCEEEEecccCCCCCCHHHHHhhcCCCEEEECCCCCccCCHHHHHHhCC
Confidence            999999888743 7899999999999999999888884454433 344443

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.35  E-value=0.00042  Score=61.45  Aligned_cols=91  Identities=15%  Similarity=0.109  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh--hhHHH-HHh---------CC--CcccCHHHHHHhCCeeeecc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP--ICALQ-ACM---------DG--FSVVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~--~~~~~-a~~---------~g--~~~~~l~e~~~~aDvvi~~~  172 (258)
                      ..++|+|+|+|.+|..+|..+...|. +|+++|+++  .+... +.+         ..  +...+..+.+++||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            56899999999999999999999998 999999984  32211 111         01  11122246688999999986


Q ss_pred             Cccc--------ccc------HH---HHhcCCCCcEEEecCCC
Q psy16115        173 GNKN--------VVT------RE---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ~~~~--------~i~------~~---~l~~~k~g~~ivnvg~~  198 (258)
                      +.+.        ++.      ++   .+....|++++++++.+
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNP  129 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNP  129 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCCh
Confidence            4332        111      12   22333688999999976

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.33  E-value=0.0002  Score=63.51  Aligned_cols=84  Identities=18%  Similarity=0.180  Sum_probs=58.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHh--CCCE-EEEEeCChhh--HHHHHhCCCc--ccCHHHHHH-----hCCeeeeccCcccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKG--LGCV-IYITEIDPIC--ALQACMDGFS--VVKLNEVIR-----TVDIVVTATGNKNV  177 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~--~G~~-Vi~~d~~~~~--~~~a~~~g~~--~~~l~e~~~-----~aDvvi~~~~~~~~  177 (258)
                      .+|+|||+|.||+.+++.+..  -+++ +.++|+++++  ...+.+.|..  ..+.++++.     +.|+|++|+++..-
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~h   84 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHHH
Confidence            589999999999999999944  4666 5668998776  3345566764  345677754     47999999874432


Q ss_pred             ccHHHHhcCCC--CcEEEe
Q psy16115        178 VTREHMDKMKN--GCVVCN  194 (258)
Q Consensus       178 i~~~~l~~~k~--g~~ivn  194 (258)
                      .. .....++.  |..+++
T Consensus        85 ~~-~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           85 VQ-NEALLRQAKPGIRLID  102 (312)
T ss_dssp             HH-HHHHHHHHCTTCEEEE
T ss_pred             HH-HHHHHHHhCCCCEEEE
Confidence            21 33344455  888877

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.32  E-value=0.00038  Score=62.32  Aligned_cols=66  Identities=15%  Similarity=0.013  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCchHHH-HHHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc-ccCHHHHHH--hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGK-GCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~-~~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~-~~~l~e~~~--~aDvvi~~~~  173 (258)
                      +-.+|+|||+|.||+ ..+..++.. +++++ ++|+++.+... +.+.|+. +.++++++.  +.|+|++|+.
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp   98 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLP   98 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCC
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCC
Confidence            346899999999998 788888877 67755 78999887654 3344664 468999987  5899999853

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.32  E-value=0.00038  Score=61.94  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=50.1

Q ss_pred             CEEEEEcCchHHHHHHHHHH-hC-CCEEE-EEeCChhhHHH-HHhCC--Cc-ccCHHHHHHh--CCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLK-GL-GCVIY-ITEIDPICALQ-ACMDG--FS-VVKLNEVIRT--VDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~-~~-G~~Vi-~~d~~~~~~~~-a~~~g--~~-~~~l~e~~~~--aDvvi~~~~  173 (258)
                      .+|+|||+|.||+..+..++ .. +.+++ ++|+++.+... +.+.|  .. +.+++++++.  .|+|++|+.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp   75 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSW   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSC
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCC
Confidence            37999999999999999998 53 67755 68999887654 44556  33 5689999986  899999863

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.32  E-value=0.00026  Score=58.51  Aligned_cols=90  Identities=8%  Similarity=0.031  Sum_probs=60.6

Q ss_pred             CCEEEEEc-CchHHHHHHHHHH-hCCCEEEEEeCChh-hHHHH--HhCCCc-----cc---CHHHHHHhCCeeeeccCcc
Q psy16115        109 GKQVVLCG-YGEVGKGCCQSLK-GLGCVIYITEIDPI-CALQA--CMDGFS-----VV---KLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       109 g~~V~IiG-~G~IG~~~a~~l~-~~G~~Vi~~d~~~~-~~~~a--~~~g~~-----~~---~l~e~~~~aDvvi~~~~~~  175 (258)
                      .|+|+|.| .|.||+.+++.|. ..|++|+++++++. +....  ...++.     ..   ++.++++++|+++.+.+..
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            36799999 4889999999999 89999999999987 54332  122222     12   3556677899999987643


Q ss_pred             ccccHHHHhcCCC--CcEEEecCCC
Q psy16115        176 NVVTREHMDKMKN--GCVVCNMGHS  198 (258)
Q Consensus       176 ~~i~~~~l~~~k~--g~~ivnvg~~  198 (258)
                      .+-....++.|++  ...||+++..
T Consensus        85 n~~~~~~~~~~~~~~~~~iv~iSs~  109 (221)
T 3r6d_A           85 GSDMASIVKALSRXNIRRVIGVSMA  109 (221)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             ChhHHHHHHHHHhcCCCeEEEEeec
Confidence            2212344454532  2478887754

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=97.31  E-value=0.00035  Score=64.32  Aligned_cols=94  Identities=21%  Similarity=0.313  Sum_probs=57.7

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeCCh---------------hhHHHHHh-CC-------CcccCH
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEIDP---------------ICALQACM-DG-------FSVVKL  158 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~~~---------------~~~~~a~~-~g-------~~~~~l  158 (258)
                      .+.+++|++|+|.|+|.+|+.+++.|...|++|+ +.|.++               ..+...++ .+       .+..+.
T Consensus       206 ~g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~  285 (421)
T 2yfq_A          206 FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITD  285 (421)
T ss_dssp             TTCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC------------
T ss_pred             cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCc
Confidence            3557899999999999999999999999999977 678772               22222211 11       122233


Q ss_pred             HHHHH-hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        159 NEVIR-TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       159 ~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++++. .+||++.|+ +.+.++.+....++ ..+|+-.+-+
T Consensus       286 ~~~~~~~~DIliP~A-~~n~i~~~~A~~l~-ak~VvEgAN~  324 (421)
T 2yfq_A          286 EEFWTKEYDIIVPAA-LENVITGERAKTIN-AKLVCEAANG  324 (421)
T ss_dssp             ---------CEEECS-CSSCSCHHHHTTCC-CSEEECCSSS
T ss_pred             cchhcCCccEEEEcC-CcCcCCcccHHHcC-CeEEEeCCcc
Confidence            34433 689999997 56778888877774 3344444444

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.31  E-value=0.0014  Score=53.81  Aligned_cols=87  Identities=14%  Similarity=0.154  Sum_probs=59.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--CH----HHHHHhCCeeeeccCcc---c----
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KL----NEVIRTVDIVVTATGNK---N----  176 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--~l----~e~~~~aDvvi~~~~~~---~----  176 (258)
                      +|+|.|. |.||+.+++.|...|.+|++++|++.+.......+++..  ++    .+.+.++|+||.+.+..   .    
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~   81 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGYL   81 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTHH
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhhH
Confidence            6899997 899999999999999999999999877654333343321  11    16677899999986542   0    


Q ss_pred             --cccHHHHhcCC-CCcEEEecCC
Q psy16115        177 --VVTREHMDKMK-NGCVVCNMGH  197 (258)
Q Consensus       177 --~i~~~~l~~~k-~g~~ivnvg~  197 (258)
                        ......++.++ .+..+|+++.
T Consensus        82 n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           82 HLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             HHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEec
Confidence              11123455553 3578888864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.31  E-value=0.00063  Score=60.56  Aligned_cols=90  Identities=12%  Similarity=0.109  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHh---------CCC--cc-cCHHHHHHhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACM---------DGF--SV-VKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~---------~g~--~~-~~l~e~~~~aDvvi~~~~  173 (258)
                      ...+|+|+|+|.+|..++..+...|. +|.++|+++.+.+. +.+         ...  .. .+. +.+++||+|+++.+
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag   84 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAG   84 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccC
Confidence            56799999999999999999998888 99999999876431 111         111  11 234 77889999999865


Q ss_pred             ccc---c-----c--cH----H---HHhcCCCCcEEEecCCC
Q psy16115        174 NKN---V-----V--TR----E---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~---~-----i--~~----~---~l~~~k~g~~ivnvg~~  198 (258)
                      .+.   .     +  |.    +   .+....|++++++++.+
T Consensus        85 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNP  126 (324)
T 3gvi_A           85 VPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNP  126 (324)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCC
Confidence            331   1     1  11    1   22333588999999876

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.29  E-value=0.00032  Score=62.08  Aligned_cols=90  Identities=21%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC--CCc--------ccCHHHHHHhCCeeeeccCcc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD--GFS--------VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~--g~~--------~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      ..+|+|||+|.||.+++..++..|.  +|+++|+++.++.. +...  ...        ..+..+.+++||+|+++.+.+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999987774  79999999865432 1111  010        012456688999999985332


Q ss_pred             cc--------------ccHH---HHhcCCCCcEEEecCCC
Q psy16115        176 NV--------------VTRE---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~--------------i~~~---~l~~~k~g~~ivnvg~~  198 (258)
                      ..              +-.+   .++...|++++++++.+
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNP  125 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP  125 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            21              1111   22333588899998765

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.28  E-value=0.00074  Score=59.55  Aligned_cols=88  Identities=17%  Similarity=0.207  Sum_probs=59.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HH--hCC---------Ccc-cCHHHHHHhCCeeeeccCcc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-AC--MDG---------FSV-VKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~--~~g---------~~~-~~l~e~~~~aDvvi~~~~~~  175 (258)
                      .+|+|+|+|.+|..++..+...|. +|+++|+++.+++. +.  ...         +.. .+. +.++++|+|+++.+++
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999999896 89999998866532 11  111         112 345 6688999999996443


Q ss_pred             cc--------------ccHHH---HhcCCCCcEEEecCCC
Q psy16115        176 NV--------------VTREH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~--------------i~~~~---l~~~k~g~~ivnvg~~  198 (258)
                      .-              +-.+.   ++...+++++++++.+
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP  121 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP  121 (309)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCc
Confidence            21              00122   3333588999998665

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.27  E-value=0.00014  Score=64.07  Aligned_cols=83  Identities=19%  Similarity=0.280  Sum_probs=56.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCE-EEEEeCChhhHHHHHhCCCc-ccCHHHHHH--hCCeeeeccCccccccHHHHh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCV-IYITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~-Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~--~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      .+|+|||+|.||+..++.++.. +.+ +.++|+++.+.....+. +. +.+++++++  ++|+|++|+.+..-. ....+
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~-~~~~~   88 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHA-EITLA   88 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHH-HHHHH
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHH-HHHHH
Confidence            4899999999999999999886 566 55899998765433222 32 457888886  799999997544322 13333


Q ss_pred             cCCCCc-EEEe
Q psy16115        185 KMKNGC-VVCN  194 (258)
Q Consensus       185 ~~k~g~-~ivn  194 (258)
                      .++.|. +++.
T Consensus        89 al~~Gk~v~~e   99 (315)
T 3c1a_A           89 AIASGKAVLVE   99 (315)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHCCCcEEEc
Confidence            455554 4444

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.26  E-value=0.0005  Score=61.86  Aligned_cols=86  Identities=17%  Similarity=0.266  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC----Cccc---CHHHHHHhCCeeeeccCccccccH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG----FSVV---KLNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g----~~~~---~l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      +..+|+|+|+|.+|+.+++.|.. ..+|.+.|++..+++.+.+..    ++..   .+.++++++|+|+.|.+..  +..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~--~~~   91 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF--LGF   91 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG--GHH
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc--ccc
Confidence            34579999999999999999975 468999999988876654432    1222   3567788999999985332  222


Q ss_pred             HHHh-cCCCCcEEEecC
Q psy16115        181 EHMD-KMKNGCVVCNMG  196 (258)
Q Consensus       181 ~~l~-~~k~g~~ivnvg  196 (258)
                      ...+ .++.|.-++|++
T Consensus        92 ~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           92 KSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             HHHHHHHHHTCEEEECC
T ss_pred             hHHHHHHhcCcceEeee
Confidence            2222 234555566655

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.26  E-value=0.0009  Score=59.62  Aligned_cols=91  Identities=18%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-H--HhCC-------Cc-ccCHHHHHHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-A--CMDG-------FS-VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a--~~~g-------~~-~~~l~e~~~~aDvvi~~~~~  174 (258)
                      ...+|+|+|+|.||..++..+...|.  +++++|+++.+.+. +  ...+       .. ..+..+.+++||+|+.+.++
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            46799999999999999999988886  79999998876432 1  1111       11 12234668899999998654


Q ss_pred             cc---c-----c--c----H---HHHhcCCCCcEEEecCCC
Q psy16115        175 KN---V-----V--T----R---EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~---~-----i--~----~---~~l~~~k~g~~ivnvg~~  198 (258)
                      +.   .     +  |    .   +.+....|++++++++.+
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP  124 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP  124 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence            32   1     1  1    1   123344688999999976

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.25  E-value=0.00011  Score=57.74  Aligned_cols=100  Identities=16%  Similarity=0.129  Sum_probs=67.0

Q ss_pred             CCEEEEEcC----chHHHHHHHHHHhCCCEEEEEeCCh--hhHHHHHhCCCcc-cCHHHHHHhCCeeeeccCcc---ccc
Q psy16115        109 GKQVVLCGY----GEVGKGCCQSLKGLGCVIYITEIDP--ICALQACMDGFSV-VKLNEVIRTVDIVVTATGNK---NVV  178 (258)
Q Consensus       109 g~~V~IiG~----G~IG~~~a~~l~~~G~~Vi~~d~~~--~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~~~---~~i  178 (258)
                      -++|+|||+    |.+|..+++.++..|.+|+.+|+..  .+     -.|... .++.++....|++++++...   .++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~-----i~G~~~~~sl~el~~~~Dlvii~vp~~~v~~v~   87 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT-----LLGQQGYATLADVPEKVDMVDVFRNSEAAWGVA   87 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE-----ETTEECCSSTTTCSSCCSEEECCSCSTHHHHHH
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc-----cCCeeccCCHHHcCCCCCEEEEEeCHHHHHHHH
Confidence            578999999    8899999999999999877776554  22     145553 36777777899999986432   233


Q ss_pred             cHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeee
Q psy16115        179 TREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEK  216 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~  216 (258)
                      . +..+ ...++++++.|.. .+...+..+...+.+.+
T Consensus        88 ~-~~~~-~g~~~i~i~~~~~-~~~l~~~a~~~Gi~~ig  122 (145)
T 2duw_A           88 Q-EAIA-IGAKTLWLQLGVI-NEQAAVLAREAGLSVVM  122 (145)
T ss_dssp             H-HHHH-HTCCEEECCTTCC-CHHHHHHHHTTTCEEEC
T ss_pred             H-HHHH-cCCCEEEEcCChH-HHHHHHHHHHcCCEEEc
Confidence            2 3333 4556777776543 44455566666666553

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.24  E-value=0.0004  Score=64.43  Aligned_cols=67  Identities=22%  Similarity=0.420  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh----hHHHHHhCCCccc---CHHHHHHh-CCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI----CALQACMDGFSVV---KLNEVIRT-VDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~----~~~~a~~~g~~~~---~l~e~~~~-aDvvi~~~~  173 (258)
                      +.|++|.|+|.|..|+++|+.|+..|++|.++|.++.    ......+.|+...   ..++.+.+ +|+|+.+++
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spg   81 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPG   81 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTT
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCc
Confidence            5899999999999999999999999999999998642    1222334566532   23345566 899998754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.24  E-value=0.00044  Score=60.87  Aligned_cols=88  Identities=17%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC----CC---cc--cCHHHH-HHhCCeeeeccCcc--
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD----GF---SV--VKLNEV-IRTVDIVVTATGNK--  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~----g~---~~--~~l~e~-~~~aDvvi~~~~~~--  175 (258)
                      +|++|+.||+|+.|......++..|++|+++|+++...+.|++.    |.   ++  .+..++ -...|+|+.+....  
T Consensus       122 ~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~~d~  201 (298)
T 3fpf_A          122 RGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAEPK  201 (298)
T ss_dssp             TTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTCSCH
T ss_pred             CcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCccCH
Confidence            79999999999977666556666799999999999887766542    32   11  122222 13579999874332  


Q ss_pred             -ccccHHHHhcCCCCcEEEecC
Q psy16115        176 -NVVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       176 -~~i~~~~l~~~k~g~~ivnvg  196 (258)
                       .++ ++..+.+|||++++-..
T Consensus       202 ~~~l-~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          202 RRVF-RNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             HHHH-HHHHHHCCTTCEEEEEE
T ss_pred             HHHH-HHHHHHcCCCcEEEEEc
Confidence             344 47788899999987544

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.22  E-value=0.0023  Score=55.47  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=34.9

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      ++.||+++|.|.+. ||+.+++.|...|++|++.+++...
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG   83 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            47899999999765 9999999999999999999988654

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.21  E-value=0.00058  Score=60.06  Aligned_cols=84  Identities=12%  Similarity=0.093  Sum_probs=56.4

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHh
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      .+|+|||+|.||+. .+..++.. |++++ ++|+++.+.+. +.+.|+. +.+.+++..+.|+|++|+.+..-. .....
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~-~~~~~   84 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHF-DVVST   84 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHH-HHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHH-HHHHH
Confidence            58999999999996 88887764 67765 89999887654 3334554 346666656799999997544322 13334


Q ss_pred             cCCCCc-EEEe
Q psy16115        185 KMKNGC-VVCN  194 (258)
Q Consensus       185 ~~k~g~-~ivn  194 (258)
                      .++.|. +++.
T Consensus        85 al~~G~~v~~e   95 (319)
T 1tlt_A           85 LLNAGVHVCVD   95 (319)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHcCCeEEEe
Confidence            455564 4554

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.21  E-value=0.00088  Score=59.99  Aligned_cols=87  Identities=21%  Similarity=0.247  Sum_probs=53.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhC-CCEE-EEEeCChhhHH-HHHhCCCccc------------------CHHHHHHhCCeee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPICAL-QACMDGFSVV------------------KLNEVIRTVDIVV  169 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~-G~~V-i~~d~~~~~~~-~a~~~g~~~~------------------~l~e~~~~aDvvi  169 (258)
                      +|+|+|+|.||+.+++.+... ++++ -+.|+++.... .+...|+...                  +.+++..++|+|+
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            799999999999999999875 4674 45677655432 2333343211                  2335556899999


Q ss_pred             eccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        170 TATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       170 ~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +|++...... ..-..++.|+.+++.|..
T Consensus        83 ~aTp~~~s~~-~a~~~~~aG~kvV~~sa~  110 (340)
T 1b7g_O           83 DTTPNGVGAQ-YKPIYLQLQRNAIFQGGE  110 (340)
T ss_dssp             ECCSTTHHHH-HHHHHHHTTCEEEECTTS
T ss_pred             ECCCCchhHH-HHHHHHHcCCeEEEeCCC
Confidence            9976553221 111223556667766654

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.21  E-value=0.00046  Score=61.58  Aligned_cols=90  Identities=13%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--CC--------Cc-ccCHHHHHHhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DG--------FS-VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~g--------~~-~~~l~e~~~~aDvvi~~~~  173 (258)
                      +..+|+|+|+|.||..+|..+...|.  +++.+|+++.+.+. +.+  .+        .. ..+.++ +++||+|+++.|
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999988886  79999998875432 111  11        01 124544 889999999854


Q ss_pred             ccc--------cccH---------HHHhcCCCCcEEEecCCC
Q psy16115        174 NKN--------VVTR---------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~--------~i~~---------~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.        ++..         +.+....|++++++++.+
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP  140 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL  140 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence            331        1211         123344789999999976

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.20  E-value=0.00065  Score=60.91  Aligned_cols=66  Identities=17%  Similarity=0.233  Sum_probs=50.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHH-hC-CCEEE-EEeCChhhHHH-HHhCC--Cc-ccCHHHHHH--hCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLK-GL-GCVIY-ITEIDPICALQ-ACMDG--FS-VVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~-~~-G~~Vi-~~d~~~~~~~~-a~~~g--~~-~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      -.+|+|||+|.||+..+..++ .. |++++ ++|+++.+... +.+.|  .. +.++++++.  +.|+|++|+.+
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   97 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASN   97 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCc
Confidence            458999999999999999998 43 67755 68999887654 33445  33 568999988  48999998633

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.19  E-value=0.00095  Score=59.76  Aligned_cols=82  Identities=9%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEE-EEEeCChhhHHH-HHhCCC----c-ccCHHHHHH--hCCeeeeccCcccccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPICALQ-ACMDGF----S-VVKLNEVIR--TVDIVVTATGNKNVVT  179 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~V-i~~d~~~~~~~~-a~~~g~----~-~~~l~e~~~--~aDvvi~~~~~~~~i~  179 (258)
                      .+|+|||+|.||+..++.++.. +.++ .++|+++.+... +.+.|+    . +.++++++.  +.|+|++|+.+..-. 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-   85 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-   85 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence            4899999999999999988876 5664 578999877543 444553    2 457899987  589999997443222 


Q ss_pred             HHHHhcCCCCcEE
Q psy16115        180 REHMDKMKNGCVV  192 (258)
Q Consensus       180 ~~~l~~~k~g~~i  192 (258)
                      ....+.++.|.-+
T Consensus        86 ~~~~~al~aGk~V   98 (362)
T 1ydw_A           86 EWAIKAAEKGKHI   98 (362)
T ss_dssp             HHHHHHHTTTCEE
T ss_pred             HHHHHHHHCCCeE
Confidence            1333445555433

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.18  E-value=0.00093  Score=56.85  Aligned_cols=42  Identities=17%  Similarity=0.252  Sum_probs=37.2

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~   47 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIAR   47 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            36899999999766 9999999999999999999999877554

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.18  E-value=0.0019  Score=56.19  Aligned_cols=39  Identities=18%  Similarity=0.329  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        106 MFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       106 ~l~g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      .+.||+++|.|.+   -||+.+++.|...|++|++.++++..
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~   68 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETF   68 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            4689999999986   79999999999999999999998754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.17  E-value=0.0024  Score=54.19  Aligned_cols=39  Identities=21%  Similarity=0.341  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEcCc-h--HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        106 MFGGKQVVLCGYG-E--VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       106 ~l~g~~V~IiG~G-~--IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      ++.||+++|.|.+ .  ||+.+|+.|...|++|++.+++...
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~   45 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL   45 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH
Confidence            4689999999975 4  9999999999999999999988654

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.17  E-value=0.00074  Score=59.79  Aligned_cols=64  Identities=14%  Similarity=0.118  Sum_probs=49.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC---CE-EEEEeCChhhHHH-HHhCCCc--ccCHHHHHH--hCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG---CV-IYITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G---~~-Vi~~d~~~~~~~~-a~~~g~~--~~~l~e~~~--~aDvvi~~~~  173 (258)
                      .++||||+|.||+..++.++..+   ++ +-++|+++.+... +.+.|..  +.++++++.  +.|+|++|+.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp   75 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQ   75 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCC
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCC
Confidence            37999999999999999998764   35 5568999887654 3445652  568999998  5899999863

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.15  E-value=3.1e-05  Score=67.73  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=59.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---c-cCHHHHH-HhCCeeeeccCccc---cccHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---V-VKLNEVI-RTVDIVVTATGNKN---VVTRE  181 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~-~~l~e~~-~~aDvvi~~~~~~~---~i~~~  181 (258)
                      .+|+|||+|.||..++..|...|.+|++++++++........|..   . .+..+.+ ..+|+|++|+....   ++. +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~~~l~-~   81 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIP-H   81 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHHHHGG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHHHHHH-H
Confidence            479999999999999999999899999999986553222222321   1 1233333 67899999964432   232 3


Q ss_pred             HHhcCCCCcEEEecCCC
Q psy16115        182 HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~  198 (258)
                      .-..++++..++.+.-|
T Consensus        82 l~~~l~~~~~iv~~~nG   98 (294)
T 3g17_A           82 LTYLAHEDTLIILAQNG   98 (294)
T ss_dssp             HHHHEEEEEEEEECCSS
T ss_pred             HHHhhCCCCEEEEeccC
Confidence            33345677888888777

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.15  E-value=0.00099  Score=58.49  Aligned_cols=87  Identities=13%  Similarity=0.069  Sum_probs=61.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHH-HHHh-------C--CC--cc-cCHHHHHHhCCeeeeccCcc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM-------D--GF--SV-VKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~-~a~~-------~--g~--~~-~~l~e~~~~aDvvi~~~~~~  175 (258)
                      +|+|+|+|.+|..++..+...|.  +|.++|+++.+++ .+.+       .  ..  .. .+ .+.+++||+|+.+.+.+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~~   80 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCCC
Confidence            79999999999999999988887  8999999987653 1111       1  11  11 24 77889999999986433


Q ss_pred             c---c-----c--cH-------HHHhcCCCCcEEEecCCC
Q psy16115        176 N---V-----V--TR-------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~---~-----i--~~-------~~l~~~k~g~~ivnvg~~  198 (258)
                      .   .     +  |.       +.+....|++++++++.+
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNP  120 (294)
T 1oju_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (294)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence            1   1     1  11       124455789999999966

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.15  E-value=0.00097  Score=59.04  Aligned_cols=91  Identities=20%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--C-------CCcc-cCHHHHHHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--D-------GFSV-VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~-------g~~~-~~l~e~~~~aDvvi~~~~~  174 (258)
                      ...+|+|+|+|.+|..++..+...|.  ++.++|+++.+++. +..  .       .... .+..+.+++||+|+.+.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            45699999999999999999987774  79999999865542 111  1       1111 1345668899999998644


Q ss_pred             ccc---------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        175 KNV---------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~---------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.-               +.  .+.+....|++++++++.+
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  125 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP  125 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence            321               11  0123344789999998765

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.15  E-value=0.0023  Score=54.69  Aligned_cols=42  Identities=14%  Similarity=0.313  Sum_probs=36.8

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      +.|++++|.|.+. ||+.+++.|...|++|+++++++.+....
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~   46 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEA   46 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5789999999755 99999999999999999999998776543

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.15  E-value=0.0013  Score=60.43  Aligned_cols=94  Identities=19%  Similarity=0.316  Sum_probs=65.3

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeC----------ChhhHHHHHh-CC-Cc--ccCHHHHHH-hCC
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACM-DG-FS--VVKLNEVIR-TVD  166 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~----------~~~~~~~a~~-~g-~~--~~~l~e~~~-~aD  166 (258)
                      .+.++.|++|+|.|+|.+|+.+++.|...|++|+ +.|.          +...+...++ .+ +.  ..+.++++. .+|
T Consensus       212 ~g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~D  291 (419)
T 3aoe_E          212 RGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAE  291 (419)
T ss_dssp             HTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCS
T ss_pred             cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCce
Confidence            3557899999999999999999999999999977 7787          5554433222 12 11  122233333 689


Q ss_pred             eeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       167 vvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +++.|+ ..+.++.+..+.++- .+|+.-+..
T Consensus       292 VliP~A-~~n~i~~~~A~~l~a-k~V~EgAN~  321 (419)
T 3aoe_E          292 VLVLAA-REGALDGDRARQVQA-QAVVEVANF  321 (419)
T ss_dssp             EEEECS-CTTCBCHHHHTTCCC-SEEEECSTT
T ss_pred             EEEecc-cccccccchHhhCCc-eEEEECCCC
Confidence            999997 567788787777753 355555544

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.13  E-value=0.0022  Score=52.36  Aligned_cols=86  Identities=13%  Similarity=0.134  Sum_probs=58.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--CH----HHHHHhCCeeeeccCcccc------
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--KL----NEVIRTVDIVVTATGNKNV------  177 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--~l----~e~~~~aDvvi~~~~~~~~------  177 (258)
                      +|+|.|. |.||+.+++.|...|.+|++++|++.+..... .+++..  ++    .+.+.++|+||.+.+....      
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~   80 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV   80 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence            6899995 89999999999999999999999987654322 333311  11    1667889999998644210      


Q ss_pred             -ccHHHHhcCCC--CcEEEecCC
Q psy16115        178 -VTREHMDKMKN--GCVVCNMGH  197 (258)
Q Consensus       178 -i~~~~l~~~k~--g~~ivnvg~  197 (258)
                       .....++.+++  ...+|+++.
T Consensus        81 ~~~~~l~~a~~~~~~~~~v~~SS  103 (221)
T 3ew7_A           81 TSLDHLISVLNGTVSPRLLVVGG  103 (221)
T ss_dssp             HHHHHHHHHHCSCCSSEEEEECC
T ss_pred             HHHHHHHHHHHhcCCceEEEEec
Confidence             11234555543  467777765

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.12  E-value=0.00081  Score=59.61  Aligned_cols=88  Identities=13%  Similarity=0.143  Sum_probs=60.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh---------CCCcc--cCHHHHHHhCCeeeeccCccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM---------DGFSV--VKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~---------~g~~~--~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      +|+|+|+|.||..++..+...|.  +++++|+++.+.+- +.+         .....  .+..+.+++||+|+.+.+.+.
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~~   81 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLPR   81 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC--
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCCC
Confidence            79999999999999999988776  89999999876431 111         11111  245677889999999865431


Q ss_pred             ---c-----c--cH-------HHHhcCCCCcEEEecCCC
Q psy16115        177 ---V-----V--TR-------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ---~-----i--~~-------~~l~~~k~g~~ivnvg~~  198 (258)
                         .     +  |.       +.+....|++++++++.+
T Consensus        82 kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP  120 (314)
T 3nep_X           82 SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANP  120 (314)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSS
T ss_pred             CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence               1     1  11       123445688999999976

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.12  E-value=0.00033  Score=62.45  Aligned_cols=91  Identities=19%  Similarity=0.183  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HH--hCCC------c-ccCHHHHHHhCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC--MDGF------S-VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~--~~g~------~-~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      .+.+|+|+|+|.||..++..+...|.  ++.++|+++.+++- +.  ....      . ..+..+.+++||+|+.+.+.+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~   87 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCC
Confidence            67899999999999999999988886  79999998876541 11  1111      1 123356688999999985432


Q ss_pred             c--------ccc------HH---HHhcCCCCcEEEecCCC
Q psy16115        176 N--------VVT------RE---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~--------~i~------~~---~l~~~k~g~~ivnvg~~  198 (258)
                      .        ++.      .+   .+....|++++++++.+
T Consensus        88 ~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP  127 (326)
T 3vku_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP  127 (326)
T ss_dssp             ----------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence            1        111      11   23445689999999866

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.12  E-value=0.00063  Score=61.03  Aligned_cols=65  Identities=20%  Similarity=0.103  Sum_probs=48.9

Q ss_pred             CCEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHHHHhC--CCc-ccCHHHHHHh--CCeeeeccC
Q psy16115        109 GKQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACMD--GFS-VVKLNEVIRT--VDIVVTATG  173 (258)
Q Consensus       109 g~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~a~~~--g~~-~~~l~e~~~~--aDvvi~~~~  173 (258)
                      ..+|+|||+|.||.. .++.++.. +.+++ ++|+++.+.....+.  +.. +.++++++..  .|+|++|+.
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp   77 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP   77 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence            358999999999985 78888876 67755 789999876544332  232 5689999985  499999853

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.12  E-value=0.00084  Score=60.35  Aligned_cols=63  Identities=22%  Similarity=0.352  Sum_probs=47.1

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHHHHhCCCc-ccCHHHHHH--hCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~a~~~g~~-~~~l~e~~~--~aDvvi~~~~  173 (258)
                      .+|+|||+|.||+. .+..++.. +++++ ++|+++.+.. +...+.. +.++++++.  +.|+|++|+.
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~~D~V~i~tp   76 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK-RDLPDVTVIASPEAAVQHPDVDLVVIASP   76 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-HHCTTSEEESCHHHHHTCTTCSEEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-hhCCCCcEECCHHHHhcCCCCCEEEEeCC
Confidence            48999999999996 77777766 67754 6899987654 2222443 468999998  6899999853

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.11  E-value=0.00035  Score=61.91  Aligned_cols=82  Identities=15%  Similarity=0.207  Sum_probs=56.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCE-EEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHhcC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCV-IYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDKM  186 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~-Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~  186 (258)
                      -+|+|+|+|.||+.+++.+... +++ +.++|+++.+ ..+  .|+. +.++++++.++|+|++|+.+..-.. .....+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~-~~~--~gv~~~~d~~~ll~~~DvViiatp~~~h~~-~~~~al   79 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-DTK--TPVFDVADVDKHADDVDVLFLCMGSATDIP-EQAPKF   79 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-SSS--SCEEEGGGGGGTTTTCSEEEECSCTTTHHH-HHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH-hhc--CCCceeCCHHHHhcCCCEEEEcCCcHHHHH-HHHHHH
Confidence            3799999999999999999876 566 5578988654 111  3433 3456776678999999985553332 445566


Q ss_pred             CCCcEEEec
Q psy16115        187 KNGCVVCNM  195 (258)
Q Consensus       187 k~g~~ivnv  195 (258)
                      +.|..++.-
T Consensus        80 ~aG~~Vv~e   88 (320)
T 1f06_A           80 AQFACTVDT   88 (320)
T ss_dssp             TTTSEEECC
T ss_pred             HCCCEEEEC
Confidence            777666553

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.10  E-value=0.00093  Score=59.25  Aligned_cols=90  Identities=17%  Similarity=0.176  Sum_probs=61.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--CC------Ccc-cCHHHHHHhCCeeeeccCccc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DG------FSV-VKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~g------~~~-~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      ..+|+|+|+|.+|..++..+...+.  ++.++|+++.+++. +..  ..      ... .+..+.+++||+|+.+.+.+.
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            4699999999999999999987775  79999998876542 221  11      111 134566889999999854331


Q ss_pred             ---------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 ---------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ---------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                                     ++.  .+.+....|++++++++.+
T Consensus        85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP  123 (318)
T 1ez4_A           85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANP  123 (318)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCc
Confidence                           111  0123334789999998765

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.10  E-value=0.00015  Score=63.06  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=34.2

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      ++.|++|+|+|.|.+|...++.|...|++|++++.+.
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            4789999999999999999999999999999998654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.10  E-value=0.004  Score=53.35  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCC
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      .+.||+++|.|.+. ||+.+|+.|...|++|+++|++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            36899999999766 9999999999999999999987

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.08  E-value=0.00083  Score=59.71  Aligned_cols=91  Identities=14%  Similarity=0.173  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HH--hC-------CCcc--cCHHHHHHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-AC--MD-------GFSV--VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~--~~-------g~~~--~~l~e~~~~aDvvi~~~~~  174 (258)
                      +..+|+|+|+|.||..++..+...|. +|.++|+++.+.+. +.  ..       ....  .+..+.+++||+|+.+.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            45799999999999999999988877 99999999876431 11  11       1111  2234678899999998543


Q ss_pred             cc---c-----c--cH----H---HHhcCCCCcEEEecCCC
Q psy16115        175 KN---V-----V--TR----E---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~---~-----i--~~----~---~l~~~k~g~~ivnvg~~  198 (258)
                      +.   .     +  |.    +   .+....|++++++++.+
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP  124 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNP  124 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence            31   1     1  11    1   22333588999999765

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.07  E-value=0.0031  Score=53.97  Aligned_cols=42  Identities=12%  Similarity=0.195  Sum_probs=37.2

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.++++.++..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~   50 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAG   50 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            46899999999755 9999999999999999999999877654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.07  E-value=0.001  Score=59.13  Aligned_cols=91  Identities=16%  Similarity=0.158  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--CCC------cc-cCHHHHHHhCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DGF------SV-VKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~g~------~~-~~l~e~~~~aDvvi~~~~~~  175 (258)
                      ...+|+|+|+|.+|..++..+...+.  ++.++|+++.+++. +.+  ...      .. .+..+.+++||+|+.+.+.+
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            45799999999999999999987775  79999999876542 221  221      11 13466688999999986433


Q ss_pred             cc---------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        176 NV---------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~---------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      .-               +.  .+.+....|++++++++.+
T Consensus        88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP  127 (326)
T 2zqz_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP  127 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            21               11  0122333689999998765

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.07  E-value=0.00072  Score=59.92  Aligned_cols=90  Identities=17%  Similarity=0.216  Sum_probs=57.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--CCCc------c-cCHHHHHHhCCeeeeccCccc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DGFS------V-VKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~g~~------~-~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      ..+|+|+|+|.+|..++..+...|.  +|.++|+++.+++. +..  .+..      . .+..+.+++||+|+.+.+++.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999998887  89999998765321 221  1211      1 123455889999999865442


Q ss_pred             ccc--------------HH---HHhcCCCCcEEEecCCC
Q psy16115        177 VVT--------------RE---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~--------------~~---~l~~~k~g~~ivnvg~~  198 (258)
                      --.              .+   .+....|++++++++.+
T Consensus        87 k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  125 (318)
T 1y6j_A           87 KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  125 (318)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCc
Confidence            100              11   22333689999998665

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.07  E-value=0.00086  Score=59.82  Aligned_cols=65  Identities=29%  Similarity=0.374  Sum_probs=47.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhC-CCEE-EEEeCChhhHHH-HHhCCCc-------------------ccCHHHHHHhCCee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPICALQ-ACMDGFS-------------------VVKLNEVIRTVDIV  168 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~-G~~V-i~~d~~~~~~~~-a~~~g~~-------------------~~~l~e~~~~aDvv  168 (258)
                      +|+|+|+|.||+.+++.+... ++++ .++|+++.+... +...|+.                   ..++++++.+.|+|
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV   83 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII   83 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence            799999999999999999876 4564 557877655432 3334321                   23678888899999


Q ss_pred             eeccCcc
Q psy16115        169 VTATGNK  175 (258)
Q Consensus       169 i~~~~~~  175 (258)
                      ++|+++.
T Consensus        84 ~~aTp~~   90 (334)
T 2czc_A           84 VDATPGG   90 (334)
T ss_dssp             EECCSTT
T ss_pred             EECCCcc
Confidence            9997544

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.06  E-value=0.00047  Score=60.99  Aligned_cols=64  Identities=13%  Similarity=0.091  Sum_probs=48.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEE-EEEeCChhhHHH-HHhCCCc--ccCHHHHHH--hCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~V-i~~d~~~~~~~~-a~~~g~~--~~~l~e~~~--~aDvvi~~~~  173 (258)
                      .+++|||+|.||...+..++.. +.++ .++|+++.+... +.+.+..  +.++++++.  +.|+|++|+.
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp   76 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATI   76 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSC
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCC
Confidence            5899999999999999988765 4564 468999877543 3344653  568999998  7899999853

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.06  E-value=0.001  Score=53.72  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=48.3

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----cc---CHHHHHHhCCeeeeccC
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----VV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~~---~l~e~~~~aDvvi~~~~  173 (258)
                      +++|+|.|. |.||+.+++.|...|.+|+++++++.+.......++.     ..   ++.++++++|+|+.+.+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~   76 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence            479999998 9999999999999999999999987654211112222     12   34566778999998864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.06  E-value=0.00039  Score=58.23  Aligned_cols=91  Identities=14%  Similarity=0.123  Sum_probs=61.1

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCc-----cc---CHHHHHHhCCeeeeccCcccc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-----VV---KLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~-----~~---~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      ..++|+|.| .|.||+.+++.|...| ++|++++|++.+.......++.     ..   +++++++++|+||.+.+....
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL  101 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence            468999999 5889999999999999 8999999988764321112222     12   355667889999987654321


Q ss_pred             --ccHHHHhcCC--CCcEEEecCCC
Q psy16115        178 --VTREHMDKMK--NGCVVCNMGHS  198 (258)
Q Consensus       178 --i~~~~l~~~k--~g~~ivnvg~~  198 (258)
                        .....++.|+  ....||+++..
T Consensus       102 ~~~~~~~~~~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A          102 DIQANSVIAAMKACDVKRLIFVLSL  126 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             hHHHHHHHHHHHHcCCCEEEEEecc
Confidence              1123444443  23578888874

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=97.05  E-value=0.00086  Score=61.70  Aligned_cols=83  Identities=24%  Similarity=0.308  Sum_probs=57.7

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeC----------ChhhHHHHHhC-CC------------ccc-CH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICALQACMD-GF------------SVV-KL  158 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~----------~~~~~~~a~~~-g~------------~~~-~l  158 (258)
                      +.++.|++|.|.|+|.+|+.+++.|...|++|+ +.|.          ++..+...++. +.            ... +.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            557899999999999999999999999999977 5665          33333222111 11            222 33


Q ss_pred             HHHHH-hCCeeeeccCccccccHHHHhcCC
Q psy16115        159 NEVIR-TVDIVVTATGNKNVVTREHMDKMK  187 (258)
Q Consensus       159 ~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k  187 (258)
                      ++++. .+|+++-|. ..+.|+.+..+.++
T Consensus       285 ~~~~~~~~Dil~P~A-~~~~I~~~~a~~l~  313 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-IENVIRGDNAGLVK  313 (421)
T ss_dssp             TGGGGCCCSEEEECS-CSSCBCTTTTTTCC
T ss_pred             hhhhcCCccEEEecC-cCCccchhhHHHcC
Confidence            44444 689999987 56677767777674

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.05  E-value=0.00077  Score=60.94  Aligned_cols=65  Identities=18%  Similarity=0.235  Sum_probs=46.7

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC---CcccC---HHHHHHhCCeeeec
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---FSVVK---LNEVIRTVDIVVTA  171 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g---~~~~~---l~e~~~~aDvvi~~  171 (258)
                      +.|++|+|+|.|.+|+.+++.++.+|++|+++|.++..........   ..+.+   +.++++.+|+|...
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            5899999999999999999999999999999998764321100000   01222   55667789988543

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.01  E-value=0.00076  Score=61.70  Aligned_cols=65  Identities=15%  Similarity=0.091  Sum_probs=48.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC---CEEEEEeCChhhHHHHHh-C------CCc-----c---cCHHHHHHh--CCeee
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG---CVIYITEIDPICALQACM-D------GFS-----V---VKLNEVIRT--VDIVV  169 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G---~~Vi~~d~~~~~~~~a~~-~------g~~-----~---~~l~e~~~~--aDvvi  169 (258)
                      ++|+|+|+|.||+.+++.|...|   .+|+++|+++.+.....+ .      .+.     .   .++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999888   389999999887654222 1      121     1   235667777  89999


Q ss_pred             eccCc
Q psy16115        170 TATGN  174 (258)
Q Consensus       170 ~~~~~  174 (258)
                      .+++.
T Consensus        82 n~ag~   86 (405)
T 4ina_A           82 NIALP   86 (405)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            98653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.00  E-value=0.0027  Score=54.73  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=36.8

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.||+++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~   68 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADA   68 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            47899999999765 9999999999999999999999877554

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.00  E-value=0.0054  Score=54.07  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=70.6

Q ss_pred             ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      .+.|.+|+++|-|  ++..+.+..+..+|++|.++.+....     ...    +.+.|..   ..++++.++++|+|+.-
T Consensus       145 ~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~  224 (307)
T 2i6u_A          145 ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTD  224 (307)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEec
Confidence            4789999999986  89999999999999999988654221     111    2244533   45799999999999983


Q ss_pred             c----C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        172 T----G------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~----~------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .    +            ....++.+.++.+|++++|..++..
T Consensus       225 ~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~  267 (307)
T 2i6u_A          225 TWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPA  267 (307)
T ss_dssp             CSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCC
T ss_pred             ceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCC
Confidence            1    1            1346788888889999999998864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.99  E-value=0.0034  Score=55.47  Aligned_cols=87  Identities=16%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHh--CC-----Ccc----cCHHHHHHhCCeeeeccCccc
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLG--CVIYITEIDPICALQACM--DG-----FSV----VKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~--~g-----~~~----~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      +|+|+|+ |.+|..++..|...|  .+|.++|+++.+. .+.+  ..     ...    .++++.++++|+|+.+.+.+.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~-~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHH-HHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            7999998 999999999999887  4799999987322 2222  11     111    256778999999999854332


Q ss_pred             cc--------------cHHH---HhcCCCCcEEEecCCC
Q psy16115        177 VV--------------TREH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i--------------~~~~---l~~~k~g~~ivnvg~~  198 (258)
                      .-              -.+.   +....+++++++++.+
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNP  119 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP  119 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCC
Confidence            10              0111   2233588999998766

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.99  E-value=0.0013  Score=58.30  Aligned_cols=64  Identities=16%  Similarity=0.207  Sum_probs=48.5

Q ss_pred             CEEEEEcCchHHH-HHHHHHHhCCCEE-EEEeCChhhHHH-HHhC-CCc-ccCHHHHHH--hCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGK-GCCQSLKGLGCVI-YITEIDPICALQ-ACMD-GFS-VVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~-~~a~~l~~~G~~V-i~~d~~~~~~~~-a~~~-g~~-~~~l~e~~~--~aDvvi~~~~  173 (258)
                      -+|+|||+|.+|. ..+..++..|.++ -++|+++.+.+. +.+. +.. +.++++++.  +.|+|++|+.
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp   75 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVI   75 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSC
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCC
Confidence            5899999999996 5677777678884 678999887654 3344 333 568999987  5899999863

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.98  E-value=0.0041  Score=53.98  Aligned_cols=38  Identities=16%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCc-h--HHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        106 MFGGKQVVLCGYG-E--VGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       106 ~l~g~~V~IiG~G-~--IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+.||+++|.|.+ .  ||+.+|+.|...|++|++.++++.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~   68 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA   68 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4789999999984 4  999999999999999999999864

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.97  E-value=0.0012  Score=56.42  Aligned_cols=36  Identities=25%  Similarity=0.444  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +.+++|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            578999999999999999999999998 699987653

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.97  E-value=0.0024  Score=54.06  Aligned_cols=41  Identities=24%  Similarity=0.379  Sum_probs=35.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.|++++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus         4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~   45 (253)
T 1hxh_A            4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQ   45 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            6899999999754 9999999999999999999998876543

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.97  E-value=0.00093  Score=61.61  Aligned_cols=65  Identities=14%  Similarity=0.112  Sum_probs=49.6

Q ss_pred             CEEEEEcCchHHH-HHHHHHHhC-CCE-EEEEeCChhhHHH-HHhCCCc------ccCHHHHHH--hCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGK-GCCQSLKGL-GCV-IYITEIDPICALQ-ACMDGFS------VVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~-~~a~~l~~~-G~~-Vi~~d~~~~~~~~-a~~~g~~------~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      -+|+|||+|.||+ ..+..++.. +++ +.++|+++.+... +.+.|..      +.++++++.  +.|+|++|+.+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~  160 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  160 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence            4899999999997 888888775 567 4578999887654 3445653      457888887  68999998643

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.97  E-value=0.0012  Score=58.98  Aligned_cols=62  Identities=23%  Similarity=0.287  Sum_probs=46.7

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHHHHhCCCc-ccCHHHHHHh--CCeeeecc
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQACMDGFS-VVKLNEVIRT--VDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~a~~~g~~-~~~l~e~~~~--aDvvi~~~  172 (258)
                      -+|+|||+|.||+. .+..++.. +++++ ++|+++.+.. +...+.. +.++++++..  .|+|++|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~t   75 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPT   75 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeC
Confidence            58999999999996 77777766 67754 6899987654 2222333 4689999985  89999985

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.0015  Score=56.42  Aligned_cols=42  Identities=29%  Similarity=0.359  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+|+.|...|++|++.++++.+...
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   72 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDA   72 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            46899999999765 9999999999999999999999876543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.95  E-value=0.0014  Score=58.56  Aligned_cols=65  Identities=23%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC--------CCE-EEEEeCChhhHHH-HHhCCCc--ccCHHHHHH--hCCeeeecc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL--------GCV-IYITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~--------G~~-Vi~~d~~~~~~~~-a~~~g~~--~~~l~e~~~--~aDvvi~~~  172 (258)
                      +--+|||||+|.||+.-++.++..        +++ |-++|+++++.+. +.+.|..  +.++++++.  +.|+|++|+
T Consensus        24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat  102 (393)
T 4fb5_A           24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT  102 (393)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred             CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence            345899999999999877766542        567 4568999988654 4455653  568999997  479999974

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.94  E-value=0.0055  Score=53.92  Aligned_cols=91  Identities=21%  Similarity=0.281  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccC---------
Q psy16115        106 MFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG---------  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~---------  173 (258)
                      .+.|.+|+++|-|   ++..+.+..+..+|++|.++.+..... .....| ...++++.++++|+|+.-..         
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~  221 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD-EENTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAV  221 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSC-TTCSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSC
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCc-chhhcC-ccCCHHHHhCCCCEEEeccchhhccccch
Confidence            3789999999975   699999999999999999985543322 111223 34589999999999998420         


Q ss_pred             ------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 ------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                            ....++.+.++.+|++++|..++..
T Consensus       222 ~~~~~~~~y~v~~~~l~~a~~~ai~mHclP~  252 (304)
T 3r7f_A          222 SQEGYLNKYGLTVERAERMKRHAIIMHPAPV  252 (304)
T ss_dssp             CSTTHHHHHSBCHHHHTTSCTTCEEECCSCC
T ss_pred             hHHHHhCCCccCHHHHhhcCCCCEEECCCCC
Confidence                  1234777888889999999988754

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.92  E-value=0.0018  Score=57.54  Aligned_cols=63  Identities=16%  Similarity=0.231  Sum_probs=48.0

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc--ccCHHHHHHh--CCeeeecc
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS--VVKLNEVIRT--VDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~--~~~l~e~~~~--aDvvi~~~  172 (258)
                      -++||||+|.||+. .+..++.. +++|+ ++|+++++... +.+.|+.  +.++++++..  .|+|++|+
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~t   94 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPL   94 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECS
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeC
Confidence            48999999999985 46667665 67755 68999988654 4456653  5689999974  79999985

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.92  E-value=0.0012  Score=59.17  Aligned_cols=62  Identities=23%  Similarity=0.189  Sum_probs=46.5

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhC-CCEE-EEEeCChhhHHHHHhC-CCc-ccCHHHHHH--hCCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGL-GCVI-YITEIDPICALQACMD-GFS-VVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~-G~~V-i~~d~~~~~~~~a~~~-g~~-~~~l~e~~~--~aDvvi~~~~  173 (258)
                      -+|||||+|.||+. .+..++.. ++++ -++|+++.+.  +... +.. +.++++++.  +.|+|++|+.
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~--~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp   74 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV--KRDFPDAEVVHELEEITNDPAIELVIVTTP   74 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH--HHHCTTSEEESSTHHHHTCTTCCEEEECSC
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH--HhhCCCCceECCHHHHhcCCCCCEEEEcCC
Confidence            48999999999996 67777766 6775 4689988763  2333 443 468999998  6899999863

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=96.92  E-value=0.0012  Score=61.10  Aligned_cols=84  Identities=18%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCE-EEEEeCChhhHHHHHh-C-C----------------------C-cccCHHHHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCV-IYITEIDPICALQACM-D-G----------------------F-SVVKLNEVI  162 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~-Vi~~d~~~~~~~~a~~-~-g----------------------~-~~~~l~e~~  162 (258)
                      -+|||||+|.||+..+..+... |++ +-++|+++++...+.+ . |                      . .+.++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            5899999999999999888764 667 5568999988665432 1 3                      1 134788888


Q ss_pred             H--hCCeeeeccCccccccHHHHhcCCCCcEEE
Q psy16115        163 R--TVDIVVTATGNKNVVTREHMDKMKNGCVVC  193 (258)
Q Consensus       163 ~--~aDvvi~~~~~~~~i~~~~l~~~k~g~~iv  193 (258)
                      .  +.|+|++|++++..=-.-.++.++.|.-++
T Consensus       104 ~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv  136 (446)
T 3upl_A          104 SNPLIDVIIDATGIPEVGAETGIAAIRNGKHLV  136 (446)
T ss_dssp             TCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEE
Confidence            7  489999998654221123444455555544

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.90  E-value=0.0017  Score=55.48  Aligned_cols=80  Identities=14%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEE-EeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHhcCC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK  187 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k  187 (258)
                      .+|+|+|+|.||+.+++.+...+.+++. +|+++..     ..|+. +.++++++ ++|+++..+......  +.++ ++
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p~a~~--~~~~-l~   74 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNPNLLF--PLLD-ED   74 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCHHHHH--HHHT-SC
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCChHHHH--HHHH-Hh
Confidence            4899999999999999999887657444 7887652     24554 34567767 899998776333322  3444 66


Q ss_pred             CCcEEEecCCC
Q psy16115        188 NGCVVCNMGHS  198 (258)
Q Consensus       188 ~g~~ivnvg~~  198 (258)
                      .|.-+|....|
T Consensus        75 ~g~~vVigTTG   85 (243)
T 3qy9_A           75 FHLPLVVATTG   85 (243)
T ss_dssp             CCCCEEECCCS
T ss_pred             cCCceEeCCCC
Confidence            66555543333

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.88  E-value=0.0018  Score=58.47  Aligned_cols=64  Identities=20%  Similarity=0.303  Sum_probs=46.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC---ccc---CHHHHHHhCCeeee
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF---SVV---KLNEVIRTVDIVVT  170 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~---~~~---~l~e~~~~aDvvi~  170 (258)
                      +.+++|+|+|.|.+|+.+++.++.+|.+|+++|.++...........   .+.   .+.++++.+|+|..
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            58999999999999999999999999999999987653211111111   111   25566678998754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.86  E-value=0.0084  Score=51.97  Aligned_cols=37  Identities=11%  Similarity=0.252  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.+++.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~   83 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPA   83 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999999766 99999999999999999998873

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.86  E-value=0.008  Score=53.38  Aligned_cols=93  Identities=17%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      .+.|.+|+++|-|  ++..+.+..+..+|++|.++.+....     ...    +.+.|..   ..++++.++++|+|+.-
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence            4789999999986  79999999999999999988553221     111    2245643   45799999999999983


Q ss_pred             c----C------------ccccccHHHHhcC-CCCcEEEecCCC
Q psy16115        172 T----G------------NKNVVTREHMDKM-KNGCVVCNMGHS  198 (258)
Q Consensus       172 ~----~------------~~~~i~~~~l~~~-k~g~~ivnvg~~  198 (258)
                      .    +            ....++.+.++.+ |++++|..++..
T Consensus       244 ~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~  287 (325)
T 1vlv_A          244 VWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPA  287 (325)
T ss_dssp             CCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             cccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCC
Confidence            1    1            2356788888999 999999998864

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.86  E-value=0.0048  Score=51.57  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=35.6

Q ss_pred             cCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.|++++|.|.+ .||+.+++.|...|++|++.++++.+...
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~   45 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEK   45 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            588999999965 59999999999999999999998766543

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.86  E-value=0.0019  Score=57.92  Aligned_cols=92  Identities=11%  Similarity=0.206  Sum_probs=61.3

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HH--hC------CCc-ccCHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQ-AC--MD------GFS-VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~--~~------g~~-~~~l~e~~~~aDvvi~~~~  173 (258)
                      +.+++|+|+|+ |.||..+|..+...|.  +|+.+|+++.+++. +.  ..      ... ..+..+.+++||+|+.+.|
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            36789999998 9999999998888884  79999998765432 11  11      111 1357788999999999865


Q ss_pred             ccc---c-----cc------HH---HHhcCCCCcE-EEecCCC
Q psy16115        174 NKN---V-----VT------RE---HMDKMKNGCV-VCNMGHS  198 (258)
Q Consensus       174 ~~~---~-----i~------~~---~l~~~k~g~~-ivnvg~~  198 (258)
                      ++.   .     +.      ++   .+....++++ +++++.+
T Consensus        86 ~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNP  128 (343)
T 3fi9_A           86 APRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNP  128 (343)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCc
Confidence            432   1     11      01   1233357785 8888866

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.86  E-value=0.0075  Score=51.79  Aligned_cols=39  Identities=21%  Similarity=0.434  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.++++.+
T Consensus        26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   65 (283)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            36899999999766 9999999999999999999988654

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.85  E-value=0.0014  Score=57.75  Aligned_cols=86  Identities=19%  Similarity=0.190  Sum_probs=58.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHhC---------C--Ccc-cCHHHHHHhCCeeeeccCccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMD---------G--FSV-VKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~~---------g--~~~-~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      +|+|+|+|.||..++..+...|. +|..+|+++.++.. +.+.         .  +.. .+. +.+++||+|+++.+.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999999887777 69999999876532 1111         1  112 344 56889999999854332


Q ss_pred             ---c------------ccHHH---HhcCCCCcEEEecCCC
Q psy16115        177 ---V------------VTREH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ---~------------i~~~~---l~~~k~g~~ivnvg~~  198 (258)
                         .            + .+.   +....|++++++++.+
T Consensus        80 k~G~~r~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~tNP  118 (308)
T 2d4a_B           80 KPGMTREQLLEANANTM-ADLAEKIKAYAKDAIVVITTNP  118 (308)
T ss_dssp             CSSCCTHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECCSS
T ss_pred             CCCCcHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEeCCc
Confidence               1            1 122   2333589999998665

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.85  E-value=0.0024  Score=56.60  Aligned_cols=64  Identities=17%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             CCEEEEEcCchHHHH-HHHHHHhCCCEEEEEeCChhh--HHHHHhCCCccc---CHHHHH-HhCCeeeecc
Q psy16115        109 GKQVVLCGYGEVGKG-CCQSLKGLGCVIYITEIDPIC--ALQACMDGFSVV---KLNEVI-RTVDIVVTAT  172 (258)
Q Consensus       109 g~~V~IiG~G~IG~~-~a~~l~~~G~~Vi~~d~~~~~--~~~a~~~g~~~~---~l~e~~-~~aDvvi~~~  172 (258)
                      .++|.|+|.|.+|++ +|+.|+..|++|.++|..+..  .....+.|+...   +.+++. .++|+|+..+
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Sp   74 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGN   74 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECT
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECC
Confidence            579999999999996 899999999999999986532  223344566532   334443 4689999874

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.84  E-value=0.0019  Score=55.19  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-----cCHHHHHHhCCeeeeccC
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-----~~l~e~~~~aDvvi~~~~  173 (258)
                      .++|+|.|+|.||+.+++.|...|.+|++.++++.+.......+++.     .+++  +.++|+||.+.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~   72 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTA   72 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCC
Confidence            37899999999999999999999999999999987765444444432     2333  678999998754

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.84  E-value=0.0026  Score=54.46  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=33.7

Q ss_pred             cCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        107 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       107 l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      +.||+++|.|.   |-||+.+++.|...|++|++.++++.
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   43 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57999999998   47999999999999999999999875

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.84  E-value=0.0027  Score=54.15  Aligned_cols=38  Identities=16%  Similarity=0.357  Sum_probs=34.5

Q ss_pred             cCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        107 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       107 l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      +.||+++|.|.   |-||+.+++.|...|++|++.++++.+
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH
Confidence            68999999995   779999999999999999999998765

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.83  E-value=0.005  Score=52.34  Aligned_cols=40  Identities=15%  Similarity=0.309  Sum_probs=35.2

Q ss_pred             cCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        107 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       107 l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      +.|++++|.|.+ -||+.+++.|...|++|+++++++.+..
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   45 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGV   45 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence            578999999975 4999999999999999999999876643

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.83  E-value=0.003  Score=54.34  Aligned_cols=41  Identities=22%  Similarity=0.323  Sum_probs=34.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.+|+++|.|.+. ||+.+++.|...|++|++.+++..++..
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   67 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQE   67 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            5789999999765 9999999999999999999999877654

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.82  E-value=0.0018  Score=60.01  Aligned_cols=108  Identities=12%  Similarity=0.184  Sum_probs=67.3

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeCC----------hhhHHHH---Hh-------------CCCcc
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEID----------PICALQA---CM-------------DGFSV  155 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~~----------~~~~~~a---~~-------------~g~~~  155 (258)
                      .+.++.|+||+|-|+|.+|..+|+.|...|++|+ +.|.+          ...+...   ++             .+.+.
T Consensus       233 ~g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~  312 (456)
T 3r3j_A          233 LNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKY  312 (456)
T ss_dssp             TTCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEE
T ss_pred             cCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceE
Confidence            3567899999999999999999999999999975 67742          3332211   11             12222


Q ss_pred             cCHHHHHH-hCCeeeeccCccccccHHHHhcCC-CCcEEE-ecCCCC--hhhchhhhcCCCc
Q psy16115        156 VKLNEVIR-TVDIVVTATGNKNVVTREHMDKMK-NGCVVC-NMGHSN--TEIDVNSLRTPDL  212 (258)
Q Consensus       156 ~~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k-~g~~iv-nvg~~~--~~~~~~~l~~~~i  212 (258)
                      .+.++++. .|||++-|. ..+.|+.+..+.+. .++.+| --+.+.  .++ .+.|..+.|
T Consensus       313 v~~~~i~~~~~DI~iPcA-~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA-~~iL~~rGI  372 (456)
T 3r3j_A          313 FENQKPWNIPCDIAFPCA-TQNEINENDADLFIQNKCKMIVEGANMPTHIKA-LHKLKQNNI  372 (456)
T ss_dssp             ECSCCGGGSCCSEEEECS-CTTCBCHHHHHHHHHHTCCEEECCSSSCBCTTH-HHHHHTTTC
T ss_pred             eCCccccccCccEEEeCC-CccchhhHHHHHHHhcCCeEEEecCCCCCCHHH-HHHHHHCCC
Confidence            33344433 589999987 46788888777762 234444 333332  222 245555545

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.81  E-value=0.0029  Score=58.07  Aligned_cols=64  Identities=22%  Similarity=0.359  Sum_probs=47.0

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC---cccC---HHHHHHhCCeeee
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF---SVVK---LNEVIRTVDIVVT  170 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~---~~~~---l~e~~~~aDvvi~  170 (258)
                      ++|++|+|+|.|.+|+.+++.++.+|.+|+++|.++...........   .+.+   +.++++++|+|+.
T Consensus        33 ~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           33 LPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            58999999999999999999999999999999987654322211111   1222   4455668898874

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.81  E-value=0.0017  Score=59.15  Aligned_cols=63  Identities=19%  Similarity=0.229  Sum_probs=47.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC---------CCEE-EEEeCChhhHHH-HHhCCCc--ccCHHHHHH--hCCeeeecc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL---------GCVI-YITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~---------G~~V-i~~d~~~~~~~~-a~~~g~~--~~~l~e~~~--~aDvvi~~~  172 (258)
                      -+|||||+|.||+..+..++..         +++| -++|+++++.+. +.+.+..  +.++++++.  +.|+|++|+
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~t  104 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITS  104 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECS
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECC
Confidence            4899999999999888887753         3564 458999988654 4455653  568999997  479999975

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.81  E-value=0.0043  Score=55.06  Aligned_cols=89  Identities=13%  Similarity=0.191  Sum_probs=58.5

Q ss_pred             CCEEEEEc-CchHHHHHHHHHHhCC--CEEEEEeCChhhHHHH--HhC-CC----c----ccCHHHHHHhCCeeeeccCc
Q psy16115        109 GKQVVLCG-YGEVGKGCCQSLKGLG--CVIYITEIDPICALQA--CMD-GF----S----VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG-~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a--~~~-g~----~----~~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..+|+|+| .|.+|..++..|...|  .+|+++|+++.+. .+  ... ..    .    ..++.+.++++|+||.+.+.
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~-~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPG-VTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHH-HHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHh-HHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            35899999 7999999999998888  5799999887521 11  111 11    1    11456778999999998643


Q ss_pred             cccc--------------cHHH---HhcCCCCcEEEecCCC
Q psy16115        175 KNVV--------------TREH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i--------------~~~~---l~~~k~g~~ivnvg~~  198 (258)
                      +..-              -.+.   +....+.+++++++.+
T Consensus        87 ~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNP  127 (326)
T 1smk_A           87 PRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNP  127 (326)
T ss_dssp             CCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCc
Confidence            3210              0112   2223577899988655

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.80  E-value=0.0014  Score=60.98  Aligned_cols=108  Identities=15%  Similarity=0.266  Sum_probs=66.8

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE-EEeC----------ChhhHH---HHHhC-------------CCcc
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY-ITEI----------DPICAL---QACMD-------------GFSV  155 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi-~~d~----------~~~~~~---~a~~~-------------g~~~  155 (258)
                      .+.++.|++|.|.|+|.+|..+|+.|...|++|+ +.|.          +++...   ..+..             +.+.
T Consensus       246 ~G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~  325 (470)
T 2bma_A          246 LNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKY  325 (470)
T ss_dssp             TTCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEE
T ss_pred             ccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEE
Confidence            3567899999999999999999999999999977 6773          333221   11111             1122


Q ss_pred             cCHHHHHH-hCCeeeeccCccccccHHHHhcC-CCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115        156 VKLNEVIR-TVDIVVTATGNKNVVTREHMDKM-KNGCVVCNMGHS---NTEIDVNSLRTPDL  212 (258)
Q Consensus       156 ~~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~-k~g~~ivnvg~~---~~~~~~~~l~~~~i  212 (258)
                      .+.++.+. .|||++-|. +.+.|+.+..+.+ +.++.+|--|-.   ..++ .+.|..+.|
T Consensus       326 v~~~~~~~~~~DI~iPcA-~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA-~~~L~~rGI  385 (470)
T 2bma_A          326 FPNEKPWGVPCTLAFPCA-TQNDVDLDQAKLLQKNGCILVGEGANMPSTVDA-INLFKSNNI  385 (470)
T ss_dssp             CSSCCTTSSCCSEEEECS-STTCBCSHHHHHHHHTTCCEEECCSSSCBCHHH-HHHHHHTTC
T ss_pred             ecCcCeeecCccEEEecc-ccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHH-HHHHHHCCc
Confidence            22123322 689999997 6777877776665 334455444433   2333 344555444

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.79  E-value=0.0029  Score=57.96  Aligned_cols=65  Identities=14%  Similarity=0.076  Sum_probs=49.4

Q ss_pred             CCEEEEEcCch---HHHHHHHHHHhCC-CEEE--EEeCChhhHHH-HHhCCCc----ccCHHHHHHh-------CCeeee
Q psy16115        109 GKQVVLCGYGE---VGKGCCQSLKGLG-CVIY--ITEIDPICALQ-ACMDGFS----VVKLNEVIRT-------VDIVVT  170 (258)
Q Consensus       109 g~~V~IiG~G~---IG~~~a~~l~~~G-~~Vi--~~d~~~~~~~~-a~~~g~~----~~~l~e~~~~-------aDvvi~  170 (258)
                      --+|+|||+|.   ||...+..++..+ .+++  ++|+++++.+. +.+.|+.    +.++++++..       .|+|++
T Consensus        37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I  116 (417)
T 3v5n_A           37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAI  116 (417)
T ss_dssp             CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEE
T ss_pred             cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEE
Confidence            35899999999   9999888888776 5755  57999988654 4445662    4689999876       899999


Q ss_pred             ccC
Q psy16115        171 ATG  173 (258)
Q Consensus       171 ~~~  173 (258)
                      |+.
T Consensus       117 ~tp  119 (417)
T 3v5n_A          117 VTP  119 (417)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            863

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.0095  Score=51.02  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.+++.
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   65 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA   65 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            47899999999766 99999999999999998886654

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.77  E-value=0.0026  Score=58.64  Aligned_cols=64  Identities=14%  Similarity=0.241  Sum_probs=48.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhC-CCEE-EEEeCChhhHHHHH----hCC---Cc-cc----CHHHHHH--hCCeeeecc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGL-GCVI-YITEIDPICALQAC----MDG---FS-VV----KLNEVIR--TVDIVVTAT  172 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~-G~~V-i~~d~~~~~~~~a~----~~g---~~-~~----~l~e~~~--~aDvvi~~~  172 (258)
                      --+|+|||+|.||...+..++.. |+++ .++|+++.+...+.    +.|   .. +.    ++++++.  +.|+|++|+
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999988875 6774 57899998765533    234   22 44    7899987  589999985

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.77  E-value=0.00077  Score=59.43  Aligned_cols=89  Identities=11%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHh---C---CCcc-cCHHHHHHhCCeeeeccCcc---
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACM---D---GFSV-VKLNEVIRTVDIVVTATGNK---  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~---~---g~~~-~~l~e~~~~aDvvi~~~~~~---  175 (258)
                      +.++|+|||+|.+|..++..+...|.  +|..+|+++.....+.+   .   .+.. .++ +.+++||+|+++.+.+   
T Consensus        13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG   91 (303)
T 2i6t_A           13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSS   91 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCC
Confidence            44799999999999999999888787  89999998752111111   1   1122 355 6688999999986332   


Q ss_pred             -----------ccccHHH---HhcCCCCcEEEecCCC
Q psy16115        176 -----------NVVTREH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 -----------~~i~~~~---l~~~k~g~~ivnvg~~  198 (258)
                                 .++ .+.   ++...|++++++++.+
T Consensus        92 ~tR~dl~~~n~~i~-~~i~~~i~~~~p~a~iiv~sNP  127 (303)
T 2i6t_A           92 QSYLDVVQSNVDMF-RALVPALGHYSQHSVLLVASQP  127 (303)
T ss_dssp             CCHHHHHHHHHHHH-HHHHHHHHHHTTTCEEEECSSS
T ss_pred             CCHHHHHHHHHHHH-HHHHHHHHHhCCCeEEEEcCCh
Confidence                       111 122   2233488999998765

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.76  E-value=0.0096  Score=52.67  Aligned_cols=93  Identities=16%  Similarity=0.169  Sum_probs=70.5

Q ss_pred             ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeecc
Q psy16115        106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~~  172 (258)
                      .+.|.+|+++|- +++..+.+..+..+|++|.++.+....     ...    +.+.|..   ..++++.++++|+|+.-.
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence            478999999997 679999999999999999887653221     111    2245543   457999999999999841


Q ss_pred             ----C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 ----G------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ----~------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                          +            ....++.+.++.+|++++|..++..
T Consensus       232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~  273 (315)
T 1pvv_A          232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPA  273 (315)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCC
T ss_pred             eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCC
Confidence                1            1356788888999999999998864

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.76  E-value=0.0021  Score=58.13  Aligned_cols=64  Identities=16%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             CEEEEEcCc-hHHHHHHHHHHhC-CCEE-EEEeCChhhHHH-HHhCCCc-ccCHHHHHHh--CCeeeeccC
Q psy16115        110 KQVVLCGYG-EVGKGCCQSLKGL-GCVI-YITEIDPICALQ-ACMDGFS-VVKLNEVIRT--VDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G-~IG~~~a~~l~~~-G~~V-i~~d~~~~~~~~-a~~~g~~-~~~l~e~~~~--aDvvi~~~~  173 (258)
                      .+|+|||+| .+|...+..++.. +.++ -++|+++.+... +.+.|+. +.++++++..  .|+|++|+.
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp   73 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASP   73 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCC
Confidence            379999999 8999999988876 5674 468999887654 3445664 5689999985  899999864

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.75  E-value=0.0056  Score=52.41  Aligned_cols=35  Identities=17%  Similarity=0.332  Sum_probs=32.3

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeC
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|+++|+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r   43 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDI   43 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEec
Confidence            46899999999866 999999999999999999998

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.74  E-value=0.0018  Score=57.09  Aligned_cols=89  Identities=19%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--CCC------cc-cCHHHHHHhCCeeeeccCcccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DGF------SV-VKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~g~------~~-~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      .+|+|+|+|.+|..++..+...+.  ++..+|+++.+++. +.+  ...      .. .+..+.+++||+|+.+.+.+.-
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            379999999999999999988773  79999999876542 222  111      11 1235668899999998543321


Q ss_pred             ---------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        178 ---------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 ---------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                                     +.  .+.+....|++++++++.+
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP  118 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNP  118 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCc
Confidence                           11  0122333789999998765

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.74  E-value=0.0025  Score=54.13  Aligned_cols=38  Identities=18%  Similarity=0.273  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        106 MFGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       106 ~l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+.||+++|.|.   |-||+.+++.|...|++|++.++++.
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            368999999998   47999999999999999999999874

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.74  E-value=0.0073  Score=51.90  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        107 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       107 l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      +.||+++|.|.   |-||+.+++.|...|++|++.++++.
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~   58 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK   58 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            68999999998   47999999999999999999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.74  E-value=0.0018  Score=60.22  Aligned_cols=66  Identities=23%  Similarity=0.291  Sum_probs=49.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcc-----cC---HHHH-HHhCCeeeeccCcc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSV-----VK---LNEV-IRTVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~-----~~---l~e~-~~~aDvvi~~~~~~  175 (258)
                      .+|.|+|+|.+|..+|+.|...|..|+++|.++.+..... ..++..     .+   ++++ +++||+++.+++..
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D   79 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTD   79 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence            4799999999999999999999999999999998876543 344432     22   2222 45799998876543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.73  E-value=0.0022  Score=58.22  Aligned_cols=64  Identities=19%  Similarity=0.145  Sum_probs=50.4

Q ss_pred             CCEEEEEcCch---HHHHHHHHHHhCC-CEEE--EEeCChhhHHH-HHhCCCc----ccCHHHHHHh-------CCeeee
Q psy16115        109 GKQVVLCGYGE---VGKGCCQSLKGLG-CVIY--ITEIDPICALQ-ACMDGFS----VVKLNEVIRT-------VDIVVT  170 (258)
Q Consensus       109 g~~V~IiG~G~---IG~~~a~~l~~~G-~~Vi--~~d~~~~~~~~-a~~~g~~----~~~l~e~~~~-------aDvvi~  170 (258)
                      --+|||||+|.   ||...+..++..+ ++++  ++|+++.+... +.+.|+.    +.++++++..       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            35899999999   9999988887765 6765  57999987654 4556762    4689999875       899999


Q ss_pred             cc
Q psy16115        171 AT  172 (258)
Q Consensus       171 ~~  172 (258)
                      |+
T Consensus        92 ~t   93 (398)
T 3dty_A           92 AT   93 (398)
T ss_dssp             ES
T ss_pred             CC
Confidence            85

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.72  E-value=0.0027  Score=54.46  Aligned_cols=42  Identities=17%  Similarity=0.221  Sum_probs=38.4

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +|+||+++|-|.+. ||+.+|+.|...|++|+++|++++++++
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~   46 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQ   46 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            58999999999888 9999999999999999999999887654

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.71  E-value=0.0026  Score=56.47  Aligned_cols=65  Identities=23%  Similarity=0.149  Sum_probs=50.1

Q ss_pred             CCEEEEEcCc-hHHHHHHHHHHhC--CCEE-EEEeCChhhHHH-HHhCCC-c-ccCHHHHHH--hCCeeeeccC
Q psy16115        109 GKQVVLCGYG-EVGKGCCQSLKGL--GCVI-YITEIDPICALQ-ACMDGF-S-VVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       109 g~~V~IiG~G-~IG~~~a~~l~~~--G~~V-i~~d~~~~~~~~-a~~~g~-~-~~~l~e~~~--~aDvvi~~~~  173 (258)
                      --+|+|||+| .+|...+..++..  +.++ -++|+++.+.+. +.+.+. . +.++++++.  +.|+|++|+.
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp   91 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLP   91 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCC
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence            3589999999 7999999999876  4564 578999987654 334454 2 568999987  4899999863

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=96.70  E-value=0.0028  Score=52.92  Aligned_cols=100  Identities=11%  Similarity=0.016  Sum_probs=68.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCC----cc--cCHHHHH---HhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGF----SV--VKLNEVI---RTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~----~~--~~l~e~~---~~aDvvi~~~~~  174 (258)
                      .|++|+.+|+| .|......++. +.+|+++|.++.....+.+    .+.    +.  .+..+..   ...|+|+.+...
T Consensus        91 ~~~~vldiG~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  168 (248)
T 2yvl_A           91 KEKRVLEFGTG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVRE  168 (248)
T ss_dssp             TTCEEEEECCT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSSC
T ss_pred             CCCEEEEeCCC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCcC
Confidence            68999999999 58887777777 8899999999987665544    232    11  1222222   247999998766


Q ss_pred             c-ccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCC
Q psy16115        175 K-NVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTP  210 (258)
Q Consensus       175 ~-~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~  210 (258)
                      . ..+ .+..+.+|+|++++-....  ......+.+...
T Consensus       169 ~~~~l-~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  206 (248)
T 2yvl_A          169 PWHYL-EKVHKSLMEGAPVGFLLPTANQVIKLLESIENY  206 (248)
T ss_dssp             GGGGH-HHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT
T ss_pred             HHHHH-HHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh
Confidence            6 455 4788889999998776654  223334455544

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.66  E-value=0.014  Score=51.37  Aligned_cols=92  Identities=14%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             ccCCCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChhh-----HHHHHhCCCc---ccCHHHHHHhCCeeeecc-C
Q psy16115        106 MFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTAT-G  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~~g~~---~~~l~e~~~~aDvvi~~~-~  173 (258)
                      .+.|.+|+++|=|   ++..+.+..+..+|++|.++.+....     ...+.+.|..   ..++++.++++|+|+.-. .
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q  231 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ  231 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence            4789999999984   89999999999999999988653221     2234455654   357999999999999842 0


Q ss_pred             --------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115        174 --------------NKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       174 --------------~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                                    ....++.+.++.+|++++|..++.
T Consensus       232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lP  269 (308)
T 1ml4_A          232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLP  269 (308)
T ss_dssp             GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSC
T ss_pred             ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCC
Confidence                          134566667777778888777664

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.65  E-value=0.0018  Score=57.30  Aligned_cols=83  Identities=16%  Similarity=0.344  Sum_probs=57.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-----cCHH---HH-HHhCCeeeeccCcc--cc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-----VKLN---EV-IRTVDIVVTATGNK--NV  177 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-----~~l~---e~-~~~aDvvi~~~~~~--~~  177 (258)
                      .+++.|+|+|.+|+.+++.|...|. |+++|+++++.+ ..+.+...     .+.+   ++ ++++|.++.+++..  .+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~  192 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI  192 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHH
Confidence            5689999999999999999999999 999999998877 66666542     2222   22 34678888876543  22


Q ss_pred             ccHHHHhcCCCCcEEE
Q psy16115        178 VTREHMDKMKNGCVVC  193 (258)
Q Consensus       178 i~~~~l~~~k~g~~iv  193 (258)
                      .-....+.+.+...++
T Consensus       193 ~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          193 HCILGIRKIDESVRII  208 (336)
T ss_dssp             HHHHHHHTTCTTSEEE
T ss_pred             HHHHHHHHHCCCCeEE
Confidence            2223455566654443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.64  E-value=0.0095  Score=50.81  Aligned_cols=37  Identities=22%  Similarity=0.435  Sum_probs=32.5

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.+++.
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~   52 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANS   52 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            47899999999876 99999999999999999877653

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.64  E-value=0.0016  Score=55.48  Aligned_cols=92  Identities=15%  Similarity=0.280  Sum_probs=62.0

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC-----cccC---HHHHHH---hCCeeeeccCc
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-----SVVK---LNEVIR---TVDIVVTATGN  174 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~-----~~~~---l~e~~~---~aDvvi~~~~~  174 (258)
                      ++||+++|-|.+. ||+.+|+.|...|++|++.|++.+.++......+     +..+   .+++++   +-|+++.+.|.
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            4899999999988 9999999999999999999998876543222221     1222   333333   46999987542


Q ss_pred             ccc----------------------ccHHHHhcCC-CCcEEEecCCC
Q psy16115        175 KNV----------------------VTREHMDKMK-NGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~----------------------i~~~~l~~~k-~g~~ivnvg~~  198 (258)
                      ...                      +.+..+..|+ +++.|||+++.
T Consensus        89 ~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  135 (242)
T 4b79_A           89 SRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASM  135 (242)
T ss_dssp             CCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCG
T ss_pred             CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            211                      1112334553 57899999874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.64  E-value=0.0079  Score=52.25  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=35.7

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      +.||+++|.|.+. ||+.+++.|...|++|++.++++.+..
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~   64 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLE   64 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            6899999999765 999999999999999999999987654

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.63  E-value=0.011  Score=52.05  Aligned_cols=93  Identities=12%  Similarity=-0.011  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHH-H-HhCCCc-ccCHHHHHHhCCeeeecc----C----
Q psy16115        106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQ-A-CMDGFS-VVKLNEVIRTVDIVVTAT----G----  173 (258)
Q Consensus       106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a-~~~g~~-~~~l~e~~~~aDvvi~~~----~----  173 (258)
                      .+.|.+|+++|- +++.++.+..+..+|++|.++.+....... . ....+. ..++++.++++|+|+.-.    +    
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~  230 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE  230 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred             CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence            478999999997 679999999999999999988654322111 0 011233 457999999999999831    1    


Q ss_pred             --------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 --------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 --------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                              ....++.+.++.+|++++|..++..
T Consensus       231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~  263 (301)
T 2ef0_A          231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCLPA  263 (301)
T ss_dssp             -CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCC
T ss_pred             hhHHHHHhhccccCHHHHHhcCCCcEEECCCCC
Confidence                    2356788888889999999998854

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.63  E-value=0.0022  Score=57.28  Aligned_cols=87  Identities=20%  Similarity=0.277  Sum_probs=52.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHH-HHHhCC------------------Ccc-cCHHHHHHhCCee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICAL-QACMDG------------------FSV-VKLNEVIRTVDIV  168 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~-~a~~~g------------------~~~-~~l~e~~~~aDvv  168 (258)
                      +|+|+|+|.||+.+++.+... +++++ +.|+++.... .+.+.+                  ... .+.++++.++|+|
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV   82 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV   82 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence            799999999999999999863 56754 4677654322 122221                  111 1456677889999


Q ss_pred             eeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        169 VTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       169 i~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +.|++...... ..-..++.|..+++-+..
T Consensus        83 ~~atp~~~~~~-~a~~~l~aG~~VId~sp~  111 (337)
T 1cf2_P           83 IDCTPEGIGAK-NLKMYKEKGIKAIFQGGE  111 (337)
T ss_dssp             EECCSTTHHHH-HHHHHHHHTCCEEECTTS
T ss_pred             EECCCchhhHH-HHHHHHHcCCEEEEecCC
Confidence            99976543221 122233445556665543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.63  E-value=0.0027  Score=55.86  Aligned_cols=64  Identities=16%  Similarity=0.163  Sum_probs=47.6

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhC-CCc-ccCHHHHH----------HhCCeeeeccC
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGCV-IYITEIDPICALQACMD-GFS-VVKLNEVI----------RTVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~-g~~-~~~l~e~~----------~~aDvvi~~~~  173 (258)
                      .+++|||+ |.||...+..++..+.+ +.++|+++.+...+... +.. +.++++++          .+.|+|++|+.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP   81 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP   81 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence            58999999 78999999999988887 56689988774322222 232 45778877          35799999863

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.61  E-value=0.0039  Score=53.21  Aligned_cols=38  Identities=16%  Similarity=0.233  Sum_probs=33.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      +.|++++|.|.+. ||+.+++.|...|++|++.++++.+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   44 (264)
T 2dtx_A            6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG   44 (264)
T ss_dssp             GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            6899999999755 9999999999999999999987654

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.60  E-value=0.012  Score=51.64  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=69.8

Q ss_pred             ccCCCEEEEEcC---chHHHHHHHHHHhC-CCEEEEEeCChhhHH--HHHhCCCc---ccCHHHHHHhCCeeeecc-Cc-
Q psy16115        106 MFGGKQVVLCGY---GEVGKGCCQSLKGL-GCVIYITEIDPICAL--QACMDGFS---VVKLNEVIRTVDIVVTAT-GN-  174 (258)
Q Consensus       106 ~l~g~~V~IiG~---G~IG~~~a~~l~~~-G~~Vi~~d~~~~~~~--~a~~~g~~---~~~l~e~~~~aDvvi~~~-~~-  174 (258)
                      .+.|.+|+++|-   |++..+.+..+..+ |++|.++.+......  .+.+.|..   ..++++.++++|+|+.-. .. 
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e  225 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE  225 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence            478999999997   58999999999999 999999865433211  12345543   247899999999999852 11 


Q ss_pred             -------------cccccHHHHhcCCCCcEEEecCC
Q psy16115        175 -------------KNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       175 -------------~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                                   ...++.+.++.+|++++|..++.
T Consensus       226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP  261 (299)
T 1pg5_A          226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  261 (299)
T ss_dssp             TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCC
Confidence                         35677788888899999988875

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=96.60  E-value=0.0042  Score=58.03  Aligned_cols=90  Identities=22%  Similarity=0.393  Sum_probs=58.8

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE-Ee----------CChhhHHHHHh-CC-------CcccCHHHHH-HhC
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TE----------IDPICALQACM-DG-------FSVVKLNEVI-RTV  165 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d----------~~~~~~~~a~~-~g-------~~~~~l~e~~-~~a  165 (258)
                      ++.|+||+|.|+|.+|..+|+.|...|++|+. .|          .+...+...+. .|       .+..+ ++++ ..|
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~  319 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDC  319 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccc
Confidence            47999999999999999999999999999775 33          33433332222 11       11111 1333 268


Q ss_pred             CeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        166 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       166 Dvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ||++-|+ ..+.|+.+..+.++- .+|+-.+.+
T Consensus       320 DIliPcA-~~n~I~~~na~~l~a-kiV~EgAN~  350 (501)
T 3mw9_A          320 DILIPAA-SEKQLTKSNAPRVKA-KIIAEGANG  350 (501)
T ss_dssp             SEEEECS-SSCCBCTTTGGGCCC-SEEECCSSS
T ss_pred             eEEeecc-ccCccCHhHHHHcCc-eEEEeCCCC
Confidence            9999987 447788777777763 344444433

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.59  E-value=0.0076  Score=50.75  Aligned_cols=41  Identities=22%  Similarity=0.434  Sum_probs=36.8

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.||+++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~   45 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKA   45 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            6899999999765 9999999999999999999999877654

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.59  E-value=0.0071  Score=51.60  Aligned_cols=44  Identities=20%  Similarity=0.374  Sum_probs=37.9

Q ss_pred             CCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC
Q psy16115        109 GKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDG  152 (258)
Q Consensus       109 g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g  152 (258)
                      +|+|+|-|.+. ||+.+|+.|...|++|+++|++++++.+..+.+
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~   46 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKER   46 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            48999999887 999999999999999999999988776554443

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.57  E-value=0.015  Score=51.33  Aligned_cols=93  Identities=18%  Similarity=0.213  Sum_probs=67.8

Q ss_pred             ccCCCEEEEEcC---chHHHHHHHHHHhC-CCEEEEEeCChhh-----HHHHHhCCCc---ccCHHHHHHhCCeeeecc-
Q psy16115        106 MFGGKQVVLCGY---GEVGKGCCQSLKGL-GCVIYITEIDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTAT-  172 (258)
Q Consensus       106 ~l~g~~V~IiG~---G~IG~~~a~~l~~~-G~~Vi~~d~~~~~-----~~~a~~~g~~---~~~l~e~~~~aDvvi~~~-  172 (258)
                      .+.|.+|+++|-   |++..+.+..+..+ |++|.++.+....     ...+.+.|..   ..++++.++++|+|+.-. 
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  230 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence            478999999998   48999999999999 9999887553221     2234455654   357899999999998852 


Q ss_pred             --C-----------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 --G-----------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 --~-----------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                        .           ....++.+.++.+|++++|..++..
T Consensus       231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPr  269 (310)
T 3csu_A          231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPR  269 (310)
T ss_dssp             ----------------CCBCGGGGTTCCTTCEEECCSCC
T ss_pred             cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCC
Confidence              1           0345666777777888888777653

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.57  E-value=0.0013  Score=58.85  Aligned_cols=62  Identities=18%  Similarity=0.144  Sum_probs=46.3

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhC-CCEE-EEEeCChhhHHHHHhC-CCc-ccCHHHHHHh--CCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGL-GCVI-YITEIDPICALQACMD-GFS-VVKLNEVIRT--VDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~-G~~V-i~~d~~~~~~~~a~~~-g~~-~~~l~e~~~~--aDvvi~~~~  173 (258)
                      -+|+|||+|.||+. .+..++.. ++++ -++|+++.+.  +.+. +.. +.++++++..  .|+|++|+.
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~--~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp   74 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS--KERYPQASIVRSFKELTEDPEIDLIVVNTP   74 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG--GTTCTTSEEESCSHHHHTCTTCCEEEECSC
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH--HHhCCCCceECCHHHHhcCCCCCEEEEeCC
Confidence            58999999999996 67777766 6775 4689988763  2233 333 4588999976  899999863

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.55  E-value=0.0034  Score=55.34  Aligned_cols=64  Identities=14%  Similarity=0.233  Sum_probs=47.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhC-CCc-ccCHHHHH-----------HhCCeeeeccC
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGCV-IYITEIDPICALQACMD-GFS-VVKLNEVI-----------RTVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~-g~~-~~~l~e~~-----------~~aDvvi~~~~  173 (258)
                      .+++|||+ |.||...+..++..|.+ +-++|+++.+...+... +.. +.++++++           .+.|+|++|+.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP   82 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP   82 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence            58999999 78999999999988887 55689988764333332 232 45788877           35799999863

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.54  E-value=0.0087  Score=51.42  Aligned_cols=42  Identities=14%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.||+++|.|.+. ||+.+++.|...|++|++.++++.+.+.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   71 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQV   71 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            47899999999765 9999999999999999999998876543

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.53  E-value=0.0093  Score=50.49  Aligned_cols=42  Identities=24%  Similarity=0.387  Sum_probs=36.9

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   47 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQ   47 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            36899999999755 9999999999999999999999877554

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.52  E-value=0.011  Score=52.71  Aligned_cols=93  Identities=13%  Similarity=0.126  Sum_probs=71.2

Q ss_pred             ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhh-----HH----HHHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPIC-----AL----QACMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~----~a~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      .+.|.+|+++|-|  +++.+.+..+..+|++|.++.+....     ..    .+.+.|..   ..++++.++++|+|+.-
T Consensus       152 ~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (333)
T 1duv_G          152 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD  231 (333)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeC
Confidence            4789999999986  79999999999999999988653221     11    12256643   45799999999999983


Q ss_pred             c----C-------------ccccccHHHHhcC-CCCcEEEecCCC
Q psy16115        172 T----G-------------NKNVVTREHMDKM-KNGCVVCNMGHS  198 (258)
Q Consensus       172 ~----~-------------~~~~i~~~~l~~~-k~g~~ivnvg~~  198 (258)
                      .    |             .+..++.+.++.+ |++++|..++..
T Consensus       232 ~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~  276 (333)
T 1duv_G          232 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPA  276 (333)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             CccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCCCC
Confidence            1    1             2356888889999 999999998864

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.52  E-value=0.0032  Score=53.09  Aligned_cols=68  Identities=18%  Similarity=0.246  Sum_probs=46.6

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccC---HHHHHH-------hCCeeeeccC
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVIR-------TVDIVVTATG  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~---l~e~~~-------~aDvvi~~~~  173 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.++++.+.........+..+   ++++++       ..|+++.+.+
T Consensus        12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   90 (247)
T 1uzm_A           12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   90 (247)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            36899999999755 99999999999999999999987653221101112222   233333       4699998764

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.51  E-value=0.01  Score=50.06  Aligned_cols=37  Identities=24%  Similarity=0.375  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        107 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       107 l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      +.||+++|.|.+ -||+.+++.|...|++|++.++++.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            578999999974 5999999999999999999998765

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.51  E-value=0.011  Score=49.99  Aligned_cols=67  Identities=19%  Similarity=0.461  Sum_probs=48.8

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC---CC-----cccC---HHHHHH-------hCCe
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMD---GF-----SVVK---LNEVIR-------TVDI  167 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~---g~-----~~~~---l~e~~~-------~aDv  167 (258)
                      +.|++++|.|.+. ||+.+++.|...|++|++.++++.+.....+.   .+     +..+   ++++++       ..|+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~   89 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDL   89 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            6899999999765 99999999999999999999998765443221   22     1222   333343       5799


Q ss_pred             eeeccC
Q psy16115        168 VVTATG  173 (258)
Q Consensus       168 vi~~~~  173 (258)
                      +|.+.+
T Consensus        90 lv~~Ag   95 (263)
T 3ak4_A           90 LCANAG   95 (263)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            998764

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.50  E-value=0.002  Score=59.63  Aligned_cols=94  Identities=21%  Similarity=0.223  Sum_probs=61.0

Q ss_pred             cCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE-EeC-----------ChhhHH---HHHh-C-----------CCcc
Q psy16115        103 TDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEI-----------DPICAL---QACM-D-----------GFSV  155 (258)
Q Consensus       103 ~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d~-----------~~~~~~---~a~~-~-----------g~~~  155 (258)
                      .+.++.|++|.|.|+|.+|..+++.|...|++|+. .|.           +++...   ..++ .           +.+.
T Consensus       224 ~G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~  303 (449)
T 1bgv_A          224 ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQF  303 (449)
T ss_dssp             TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEE
T ss_pred             ccCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEE
Confidence            35678999999999999999999999999999764 662           232211   1111 1           1222


Q ss_pred             cCHHHHHH-hCCeeeeccCccccccHHHHhcCC-CCcEEEecCC
Q psy16115        156 VKLNEVIR-TVDIVVTATGNKNVVTREHMDKMK-NGCVVCNMGH  197 (258)
Q Consensus       156 ~~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k-~g~~ivnvg~  197 (258)
                      .+.++++. .+|+++-|. ..+.|+.+..+.++ .|+.+|--|-
T Consensus       304 i~~~e~~~~~~Dil~P~A-~~~~I~~~na~~l~a~g~kiV~EgA  346 (449)
T 1bgv_A          304 FPGEKPWGQKVDIIMPCA-TQNDVDLEQAKKIVANNVKYYIEVA  346 (449)
T ss_dssp             EETCCGGGSCCSEEECCS-CTTCBCHHHHHHHHHTTCCEEECCS
T ss_pred             eCchhhhcCCcceeeccc-cccccchhhHHHHHhcCCeEEEeCC
Confidence            22222232 689999887 66778877777765 3555554443

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=96.49  E-value=0.0045  Score=50.81  Aligned_cols=105  Identities=10%  Similarity=-0.001  Sum_probs=67.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCCc----c--cCHHHH---HHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS----V--VKLNEV---IRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~~----~--~~l~e~---~~~aDvvi~~~~~  174 (258)
                      .+++|+-+|+|. |......++. +.+|+++|.++.....+++    .|..    .  .+..+.   ....|+|+...+.
T Consensus        55 ~~~~vLDlGcG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           55 RGELLWDIGGGS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             TTCEEEEETCTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCEEEEecCCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            689999999997 7766666665 8899999999987665443    2322    1  133332   2357999876432


Q ss_pred             -cccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceee
Q psy16115        175 -KNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWE  215 (258)
Q Consensus       175 -~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~  215 (258)
                       ..++ .+..+.+|+|++++-....  +.....+.++.....+.
T Consensus       133 ~~~~l-~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~  175 (204)
T 3njr_A          133 SQALY-DRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLL  175 (204)
T ss_dssp             CHHHH-HHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEE
T ss_pred             cHHHH-HHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEE
Confidence             2234 4777889999999876655  33344455544334433

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.49  E-value=0.01  Score=55.02  Aligned_cols=90  Identities=16%  Similarity=0.126  Sum_probs=64.9

Q ss_pred             cccCCCEEEEEcCc----------hHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hC-CCcc-cCHHHHHHhCCeeeec
Q psy16115        105 VMFGGKQVVLCGYG----------EVGKGCCQSLKGLGCVIYITEIDPICALQAC-MD-GFSV-VKLNEVIRTVDIVVTA  171 (258)
Q Consensus       105 ~~l~g~~V~IiG~G----------~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~-g~~~-~~l~e~~~~aDvvi~~  171 (258)
                      ..+.|++|+|+|+.          .-...+++.|...|++|.+||+.-..  .+. .. +... .++++.++++|.++++
T Consensus       318 ~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~ad~vvi~  395 (446)
T 4a7p_A          318 GDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVE--QASKMLTDVEFVENPYAAADGADALVIV  395 (446)
T ss_dssp             SCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHH--HHGGGCSSCCBCSCHHHHHTTBSEEEEC
T ss_pred             ccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCH--hHHHhcCCceEecChhHHhcCCCEEEEe
Confidence            35789999999986          45789999999999999999986532  222 22 4443 3678899999999999


Q ss_pred             cCcccc--ccHHHHh-cCCCCcEEEecCCC
Q psy16115        172 TGNKNV--VTREHMD-KMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~~~~~~--i~~~~l~-~~k~g~~ivnvg~~  198 (258)
                      +..+..  ++-+.+. .|+ +.+|+| +|+
T Consensus       396 t~~~~f~~~d~~~~~~~~~-~~~i~D-~r~  423 (446)
T 4a7p_A          396 TEWDAFRALDLTRIKNSLK-SPVLVD-LRN  423 (446)
T ss_dssp             SCCTTTTSCCHHHHHTTBS-SCBEEC-SSC
T ss_pred             eCCHHhhcCCHHHHHHhcC-CCEEEE-CCC
Confidence            866653  5545454 455 457777 455

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.48  E-value=0.01  Score=50.14  Aligned_cols=41  Identities=15%  Similarity=0.283  Sum_probs=36.2

Q ss_pred             cCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.|++++|.|.+ -||+.+++.|...|++|++.++++.+...
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   44 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAA   44 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            579999999974 59999999999999999999999876554

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.48  E-value=0.0015  Score=58.14  Aligned_cols=64  Identities=20%  Similarity=0.200  Sum_probs=44.7

Q ss_pred             CEEEEEcCchHHHH-HHH-HHHh-CCCEEE-EEeCChhhHHHHHh-CCCc-ccCHHHHHHh--CCeeeeccC
Q psy16115        110 KQVVLCGYGEVGKG-CCQ-SLKG-LGCVIY-ITEIDPICALQACM-DGFS-VVKLNEVIRT--VDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~-~l~~-~G~~Vi-~~d~~~~~~~~a~~-~g~~-~~~l~e~~~~--aDvvi~~~~  173 (258)
                      .+|+|||+|.||+. .+. .++. -+++++ ++|+++.+...+.+ .+.. +.++++++..  .|+|++|+.
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp   74 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTH   74 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSC
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCC
Confidence            37999999999985 555 3343 367755 78998876533222 2443 4688999875  799999863

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.48  E-value=0.0094  Score=50.31  Aligned_cols=38  Identities=24%  Similarity=0.340  Sum_probs=33.3

Q ss_pred             CCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        109 GKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       109 g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      ||+++|.|.+. ||+.+++.|...|++|++.++++.+..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   40 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAK   40 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            68899999654 999999999999999999999887654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.48  E-value=0.0061  Score=56.47  Aligned_cols=84  Identities=24%  Similarity=0.228  Sum_probs=54.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHh----------CCCE-EEEEeCChhhHHHHHhCCC-cccCHHHHHH--hCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKG----------LGCV-IYITEIDPICALQACMDGF-SVVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~----------~G~~-Vi~~d~~~~~~~~a~~~g~-~~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      --+|+|+|+|.||+.+++.+..          .+.+ +-++|+++.+..... .+. .+.++++++.  +.|+|++|++.
T Consensus        10 ~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           10 PIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             CEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCS
T ss_pred             cccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCC
Confidence            3589999999999999887753          3455 445788887654332 233 2457889887  47999999764


Q ss_pred             cccccHHHHhcCCCCcEEE
Q psy16115        175 KNVVTREHMDKMKNGCVVC  193 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~iv  193 (258)
                      ...-..-..+.++.|.-++
T Consensus        89 ~~~h~~~~~~AL~aGKhVv  107 (444)
T 3mtj_A           89 LEPARELVMQAIANGKHVV  107 (444)
T ss_dssp             STTHHHHHHHHHHTTCEEE
T ss_pred             chHHHHHHHHHHHcCCEEE
Confidence            2222112345566665555

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.48  E-value=0.0071  Score=51.33  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             cCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        107 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      +.||+++|.|.   |-||+.+++.|...|++|++.++++
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH
Confidence            57899999998   4799999999999999999999887

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.48  E-value=0.0026  Score=58.63  Aligned_cols=63  Identities=19%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             CEEEEEcC----chHHHHHHHHHHhC--CCEE-EEEeCChhhHHH-HHhCCCc----ccCHHHHHH--hCCeeeecc
Q psy16115        110 KQVVLCGY----GEVGKGCCQSLKGL--GCVI-YITEIDPICALQ-ACMDGFS----VVKLNEVIR--TVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~----G~IG~~~a~~l~~~--G~~V-i~~d~~~~~~~~-a~~~g~~----~~~l~e~~~--~aDvvi~~~  172 (258)
                      .+|+|||+    |.||...+..++..  ++++ .++|+++.+... +.+.|+.    +.++++++.  +.|+|++|+
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~t   97 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAI   97 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECS
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeC
Confidence            58999999    99999999999887  6774 578999887654 4445653    468999987  589999985

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.47  E-value=0.0023  Score=57.20  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=46.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC--------CCE-EEEEeCChhhHHH-HHhCCCc--ccCHHHHHH--hCCeeeecc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL--------GCV-IYITEIDPICALQ-ACMDGFS--VVKLNEVIR--TVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~--------G~~-Vi~~d~~~~~~~~-a~~~g~~--~~~l~e~~~--~aDvvi~~~  172 (258)
                      -+|||||+|.||+..+..++..        +++ +-++|+++++.+. +.+.|..  +.++++++.  +.|+|++|+
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~t   83 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCT   83 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECS
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeC
Confidence            4899999999999877776643        235 4568999988654 4445653  468999986  479999974

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.47  E-value=0.021  Score=49.14  Aligned_cols=38  Identities=13%  Similarity=0.253  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++++++..
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            36899999999766 999999999999999999999875

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.46  E-value=0.0028  Score=56.54  Aligned_cols=91  Identities=16%  Similarity=0.253  Sum_probs=62.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--CCC------c---ccCHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DGF------S---VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~g~------~---~~~l~e~~~~aDvvi~~~  172 (258)
                      ....+|+|+|+|.||..++..+...|.  +++++|+++.+++. +.+  ...      .   ..+.+ .+++||+|+.+.
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~a   95 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITA   95 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEcc
Confidence            367899999999999999999988886  79999998765432 111  110      1   12344 588999999985


Q ss_pred             Ccc--------ccccH---------HHHhcCCCCcEEEecCCC
Q psy16115        173 GNK--------NVVTR---------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ~~~--------~~i~~---------~~l~~~k~g~~ivnvg~~  198 (258)
                      |.+        .++..         +.+....|++++++++.+
T Consensus        96 G~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP  138 (331)
T 4aj2_A           96 GARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP  138 (331)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence            432        12211         123344789999999976

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.45  E-value=0.0044  Score=54.29  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +.+++|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            688999999999999999999999997 799998765

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.45  E-value=0.0057  Score=54.70  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +++++|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            589999999999999999999999998 699998753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.45  E-value=0.0024  Score=51.92  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|+|||+|+.|+.+|..|...|.+|+++|..+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            59999999999999999999999999999765

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.45  E-value=0.011  Score=48.84  Aligned_cols=65  Identities=17%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHHhCCCc-----cc---CHHHHHHhCCeeeeccC
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMDGFS-----VV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~~g~~-----~~---~l~e~~~~aDvvi~~~~  173 (258)
                      .+++|+|.| .|.||+.+++.|...  |++|++.++++.+.... ..++.     ..   ++++++++.|+|+.+.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            578999999 588999999999998  88999999987654322 22222     12   35566778999998754

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=96.44  E-value=0.0027  Score=55.70  Aligned_cols=88  Identities=13%  Similarity=0.058  Sum_probs=58.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHH-HHHhC-------CC--c--ccCHHHHHHhCCeeeeccCcc-
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACMD-------GF--S--VVKLNEVIRTVDIVVTATGNK-  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~-~a~~~-------g~--~--~~~l~e~~~~aDvvi~~~~~~-  175 (258)
                      +|+|||+|.||..+|..++..+.  ++..+|+++.+.+ .+...       +.  .  ..+..+.+++||+|+++.|.+ 
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~pr   81 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLAR   81 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCCC
Confidence            79999999999999999887774  6999999875532 12211       11  1  112235688999999985422 


Q ss_pred             --cc-----c--cH-------HHHhcCCCCcEEEecCCC
Q psy16115        176 --NV-----V--TR-------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 --~~-----i--~~-------~~l~~~k~g~~ivnvg~~  198 (258)
                        ++     +  |.       +.+..-.|+++++.++.+
T Consensus        82 kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNP  120 (294)
T 2x0j_A           82 KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (294)
T ss_dssp             CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence              21     1  11       123444678999999877

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.44  E-value=0.011  Score=52.82  Aligned_cols=93  Identities=18%  Similarity=0.114  Sum_probs=70.9

Q ss_pred             ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      .+.|.+|+++|-|  +++.+.+..+..+|++|.++.+....     ...    +.+.|..   ..++++.++++|+|+.-
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  231 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD  231 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeC
Confidence            4789999999986  79999999999999999988653221     111    2244643   45799999999999983


Q ss_pred             c----C-------------ccccccHHHHhcC-CCCcEEEecCCC
Q psy16115        172 T----G-------------NKNVVTREHMDKM-KNGCVVCNMGHS  198 (258)
Q Consensus       172 ~----~-------------~~~~i~~~~l~~~-k~g~~ivnvg~~  198 (258)
                      .    |             .+..++.+.++.+ |++++|..+...
T Consensus       232 ~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP~  276 (335)
T 1dxh_A          232 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPA  276 (335)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCC
T ss_pred             CccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCCC
Confidence            1    1             2356788889999 999999998864

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.44  E-value=0.0083  Score=50.56  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=37.0

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.||+++|.|.+. ||+.+++.|...|++|+++++++.+.+.
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~   48 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQA   48 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            36899999999765 9999999999999999999999876544

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.43  E-value=0.02  Score=50.84  Aligned_cols=93  Identities=18%  Similarity=0.100  Sum_probs=69.2

Q ss_pred             ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhh-------HHHH----Hh--CCCc---ccCHHHHHHhCCe
Q psy16115        106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPIC-------ALQA----CM--DGFS---VVKLNEVIRTVDI  167 (258)
Q Consensus       106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~-------~~~a----~~--~g~~---~~~l~e~~~~aDv  167 (258)
                      .+.|.+|+++|-|  ++.++.+..+..+|++|.++.+....       ...+    .+  .|..   ..++++.++++|+
T Consensus       158 ~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDv  237 (328)
T 3grf_A          158 GFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV  237 (328)
T ss_dssp             TGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE
T ss_pred             ccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCE
Confidence            4789999999976  69999999999999999888654322       1112    22  4543   3589999999999


Q ss_pred             eeecc----C-------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTAT----G-------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~----~-------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      |+.-+    +             ....++.+.++.+|++++|..++..
T Consensus       238 vytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa  285 (328)
T 3grf_A          238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPA  285 (328)
T ss_dssp             EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCC
T ss_pred             EEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCC
Confidence            98631    1             1245788888999999999998863

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.43  E-value=0.011  Score=52.20  Aligned_cols=93  Identities=16%  Similarity=0.099  Sum_probs=68.1

Q ss_pred             ccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHH---HHhCCCc---ccCHHHHHHhCCeeeecc----C-
Q psy16115        106 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ---ACMDGFS---VVKLNEVIRTVDIVVTAT----G-  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~---a~~~g~~---~~~l~e~~~~aDvvi~~~----~-  173 (258)
                      .+.|.+|+++|=| ++..+.+..+..+|++|.++.+.......   +.+.|..   ..++++.++++|+|+.-.    + 
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~  230 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF  230 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence            4789999999965 49999999999999999888553221111   1122332   358999999999998732    1 


Q ss_pred             -----------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 -----------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 -----------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                                 ....++.+.++.+|++++|..++..
T Consensus       231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~  266 (309)
T 4f2g_A          231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCLPA  266 (309)
T ss_dssp             -------CCSGGGGCBCHHHHTTSCTTCEEEECSSC
T ss_pred             hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCC
Confidence                       1346888888989999999998863

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.42  E-value=0.013  Score=49.54  Aligned_cols=41  Identities=17%  Similarity=0.181  Sum_probs=35.8

Q ss_pred             ccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        106 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       106 ~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      ++.||+++|.|.+ -||+.+++.|...|++|++.++++.+..
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   45 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLH   45 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence            3689999999975 4999999999999999999999987654

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.42  E-value=0.012  Score=49.40  Aligned_cols=42  Identities=21%  Similarity=0.412  Sum_probs=36.8

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|+++++++.+...
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~   48 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEA   48 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            36899999999755 9999999999999999999999876544

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.40  E-value=0.013  Score=49.18  Aligned_cols=67  Identities=19%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCc-----ccC---HHHHHH-------hCCeee
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFS-----VVK---LNEVIR-------TVDIVV  169 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~-----~~~---l~e~~~-------~aDvvi  169 (258)
                      +.|++++|.|.+. ||+.+++.|...|++|++.++++.+.....+ .++.     ..+   ++++++       ..|+++
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999999755 9999999999999999999999876554332 2322     222   233333       379999


Q ss_pred             eccC
Q psy16115        170 TATG  173 (258)
Q Consensus       170 ~~~~  173 (258)
                      .+.+
T Consensus        83 n~Ag   86 (245)
T 1uls_A           83 HYAG   86 (245)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.40  E-value=0.013  Score=48.80  Aligned_cols=67  Identities=18%  Similarity=0.329  Sum_probs=48.5

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh--CCCc-----ccC---HHHHHH---hCCeeeecc
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM--DGFS-----VVK---LNEVIR---TVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~--~g~~-----~~~---l~e~~~---~aDvvi~~~  172 (258)
                      ++|++++|.|. |.||+.+++.|...|++|+++++++.+.....+  .+.+     ..+   ++++++   ..|++|.+.
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A   84 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECC
Confidence            68999999997 569999999999999999999998876543322  1221     222   334443   369999875


Q ss_pred             C
Q psy16115        173 G  173 (258)
Q Consensus       173 ~  173 (258)
                      +
T Consensus        85 g   85 (244)
T 3d3w_A           85 A   85 (244)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.40  E-value=0.012  Score=49.58  Aligned_cols=42  Identities=24%  Similarity=0.391  Sum_probs=37.4

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.|++++|.|.+. ||+.+++.|...|++|+++++++.+...
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~   48 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAER   48 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            46899999999765 9999999999999999999999877654

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.39  E-value=0.011  Score=52.78  Aligned_cols=86  Identities=21%  Similarity=0.283  Sum_probs=51.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc--------------------c-cCHHHHHHhC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS--------------------V-VKLNEVIRTV  165 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~--------------------~-~~l~e~~~~a  165 (258)
                      .+|+|+|+|.||+.+++.+... +++++ +.|.++..... +...|+.                    . .+.++.+.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3799999999999999998776 46754 45655433221 1112110                    0 0233344589


Q ss_pred             CeeeeccCccccccHHH-HhcCCCCcEEEecC
Q psy16115        166 DIVVTATGNKNVVTREH-MDKMKNGCVVCNMG  196 (258)
Q Consensus       166 Dvvi~~~~~~~~i~~~~-l~~~k~g~~ivnvg  196 (258)
                      |+|+.|++...... .. -..++.|..+|.-+
T Consensus        83 DiV~eatg~~~s~~-~a~~~~l~aG~~VI~sa  113 (343)
T 2yyy_A           83 DIVVDGAPKKIGKQ-NLENIYKPHKVKAILQG  113 (343)
T ss_dssp             SEEEECCCTTHHHH-HHHHTTTTTTCEEEECT
T ss_pred             CEEEECCCccccHH-HHHHHHHHCCCEEEECC
Confidence            99999975433221 22 24677787776544

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.39  E-value=0.0036  Score=51.82  Aligned_cols=83  Identities=10%  Similarity=0.146  Sum_probs=56.6

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc---CHHHHHH---hCCeeeeccCccc---
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV---KLNEVIR---TVDIVVTATGNKN---  176 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~---~l~e~~~---~aDvvi~~~~~~~---  176 (258)
                      +.||+++|.|.+. ||+.+++.|...|++|++.++++.         .+..   +.+++++   ..|+++.+.+...   
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---------~D~~~~~~v~~~~~~~g~id~lv~nAg~~~~~~   74 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG---------LDISDEKSVYHYFETIGAFDHLIVTAGSYAPAG   74 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT---------CCTTCHHHHHHHHHHHCSEEEEEECCCCCCCCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc---------cCCCCHHHHHHHHHHhCCCCEEEECCCCCCCCC
Confidence            5789999999865 999999999999999999987653         1222   2333333   4699888754320   


Q ss_pred             c----------------------ccHHHHhcCCCCcEEEecCCC
Q psy16115        177 V----------------------VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~----------------------i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .                      +.+..+..|++++.+|+++..
T Consensus        75 ~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           75 KVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             CTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence            0                      111234566778899999864

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=96.39  E-value=0.0028  Score=58.36  Aligned_cols=66  Identities=20%  Similarity=0.314  Sum_probs=49.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH--HHHHhCCCccc---CHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA--LQACMDGFSVV---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~--~~a~~~g~~~~---~l~e~~~~aDvvi~~~~  173 (258)
                      +.+++|.|+|.|..|++.|+.|+..|++|+++|......  .... .|....   ...+.+.++|.|+..++
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~g   73 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPG   73 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTT
T ss_pred             CCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCC
Confidence            578999999999999999999999999999999865432  1112 455432   12455668999998754

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.39  E-value=0.0089  Score=51.40  Aligned_cols=41  Identities=10%  Similarity=0.214  Sum_probs=36.8

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.||+++|.|.+. ||+.+++.|...|++|++++++..+...
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   44 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRE   44 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHH
Confidence            5899999999766 9999999999999999999999877654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.38  E-value=0.012  Score=49.83  Aligned_cols=41  Identities=15%  Similarity=0.218  Sum_probs=36.0

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.|++++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   46 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKA   46 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            6899999999655 9999999999999999999999876543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.38  E-value=0.018  Score=51.29  Aligned_cols=40  Identities=20%  Similarity=0.189  Sum_probs=35.4

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      ..+.||+++|.|.+. ||+.+++.|...|++|++.+++..+
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            357999999999765 9999999999999999999988763

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.37  E-value=0.0022  Score=53.31  Aligned_cols=68  Identities=13%  Similarity=0.184  Sum_probs=48.9

Q ss_pred             cCCCEEEEEc-CchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCc-----c---cCHHHHHHhCCeeeeccCc
Q psy16115        107 FGGKQVVLCG-YGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFS-----V---VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       107 l~g~~V~IiG-~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~-----~---~~l~e~~~~aDvvi~~~~~  174 (258)
                      +.+++++|.| .|.||+.+++.|...|+  +|+++++++.+.......++.     .   .++++++++.|+|+.+.+.
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            4689999999 58899999999999999  999999987643211111111     1   2345556678999998653

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.37  E-value=0.0045  Score=55.08  Aligned_cols=63  Identities=14%  Similarity=0.236  Sum_probs=44.4

Q ss_pred             CEEEEEcCchHHH-HHHHHHHhC-CCEEE-EEeCChhhHHHHHh---CCCc-ccCHHHHHHh--CCeeeeccC
Q psy16115        110 KQVVLCGYGEVGK-GCCQSLKGL-GCVIY-ITEIDPICALQACM---DGFS-VVKLNEVIRT--VDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~G~IG~-~~a~~l~~~-G~~Vi-~~d~~~~~~~~a~~---~g~~-~~~l~e~~~~--aDvvi~~~~  173 (258)
                      -+|+|||+|.||+ ..+..++.. +++++ ++|++ .....+.+   .+.. +.++++++..  .|+|++|+.
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp   74 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH-VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTP   74 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT-CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSC
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC-HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCC
Confidence            3799999999998 577777665 67754 68887 22222333   3443 4688999875  899999863

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=96.36  E-value=0.0051  Score=55.00  Aligned_cols=31  Identities=16%  Similarity=0.299  Sum_probs=27.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEE-EeC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEI  140 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d~  140 (258)
                      -+|||.|+|+||+.+++.+..+|++|+. .|+
T Consensus         8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp   39 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDP   39 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECT
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCEEEEEeCC
Confidence            5899999999999999999999998766 564

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.35  E-value=0.014  Score=48.38  Aligned_cols=68  Identities=15%  Similarity=0.284  Sum_probs=49.0

Q ss_pred             ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh--CCCc-----ccC---HHHHHH---hCCeeeec
Q psy16115        106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM--DGFS-----VVK---LNEVIR---TVDIVVTA  171 (258)
Q Consensus       106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~--~g~~-----~~~---l~e~~~---~aDvvi~~  171 (258)
                      .+.|++++|.|. |-||+.+++.|...|++|+++++++.+.....+  .+.+     ..+   ++++++   ..|+++.+
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEEC
Confidence            368999999997 569999999999999999999998876543322  1222     222   334444   36999887


Q ss_pred             cC
Q psy16115        172 TG  173 (258)
Q Consensus       172 ~~  173 (258)
                      .+
T Consensus        84 Ag   85 (244)
T 1cyd_A           84 AA   85 (244)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.35  E-value=0.009  Score=50.45  Aligned_cols=42  Identities=12%  Similarity=0.273  Sum_probs=34.6

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.++++.+.+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~   46 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEE   46 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC----
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            36899999999865 9999999999999999999998876543

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.34  E-value=0.0083  Score=53.51  Aligned_cols=88  Identities=15%  Similarity=0.172  Sum_probs=54.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCEEEE-EeC--ChhhHHHHHhC----C-C----------------c-----ccCHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCVIYI-TEI--DPICALQACMD----G-F----------------S-----VVKLN  159 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~Vi~-~d~--~~~~~~~a~~~----g-~----------------~-----~~~l~  159 (258)
                      -+|+|+|+|.||+.+++.+... +.+++. .|+  ++.......+.    | +                .     ..+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            4899999999999999998754 578655 453  44332221110    0 0                0     01344


Q ss_pred             HH-H--HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        160 EV-I--RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       160 e~-~--~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++ .  .++|+|++|++....-. ..-+.++.|+..|+++-+
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~e-~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTME-KAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSHH-HHGGGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhhHH-HHHHHHhCCCeEEEeccC
Confidence            44 2  47899999986554332 344456778777777765

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.34  E-value=0.013  Score=50.32  Aligned_cols=42  Identities=12%  Similarity=0.358  Sum_probs=37.2

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.||+++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~   66 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVR   66 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46899999999765 9999999999999999999999876544

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.33  E-value=0.0066  Score=58.20  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +.+.+|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus       324 L~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          324 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            689999999999999999999999998 799998764

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.32  E-value=0.016  Score=51.11  Aligned_cols=93  Identities=17%  Similarity=0.129  Sum_probs=68.8

Q ss_pred             ccC-CCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh-----HHHH----HhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        106 MFG-GKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC-----ALQA----CMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       106 ~l~-g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a----~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      .+. |.+|+++|=|. +..+.+..+..+|++|.++.+....     ...+    .+.|..   ..++++.++++|+|+.-
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~  221 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD  221 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence            367 99999999654 9999999999999999887553221     1112    234443   35899999999999874


Q ss_pred             c----C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        172 T----G------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       172 ~----~------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .    +            ....++.+.++.+|++++|..++..
T Consensus       222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa  264 (307)
T 3tpf_A          222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPA  264 (307)
T ss_dssp             CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCC
T ss_pred             CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCC
Confidence            3    1            1345788888889999999998863

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.32  E-value=0.014  Score=49.10  Aligned_cols=67  Identities=19%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CC--C-----cccC---HHHHHH-------hCCe
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACM-DG--F-----SVVK---LNEVIR-------TVDI  167 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g--~-----~~~~---l~e~~~-------~aDv  167 (258)
                      +.|++++|.|.+. ||+.+++.|...|++|++.++++.+.....+ .+  +     +..+   ++++++       ..|+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   89 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDV   89 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            6899999999755 9999999999999999999998776543222 11  1     1122   333443       5899


Q ss_pred             eeeccC
Q psy16115        168 VVTATG  173 (258)
Q Consensus       168 vi~~~~  173 (258)
                      +|.+.+
T Consensus        90 li~~Ag   95 (265)
T 2o23_A           90 AVNCAG   95 (265)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            998754

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.31  E-value=0.0048  Score=55.27  Aligned_cols=65  Identities=15%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCchHHH-HHHHHHHhCCCE-EEEEeCChhhHHH-HHhCCC-c-ccCHHHHHHh--CCeeeecc
Q psy16115        108 GGKQVVLCGYGEVGK-GCCQSLKGLGCV-IYITEIDPICALQ-ACMDGF-S-VVKLNEVIRT--VDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~-~~a~~l~~~G~~-Vi~~d~~~~~~~~-a~~~g~-~-~~~l~e~~~~--aDvvi~~~  172 (258)
                      +--+|||||+|.+|. ..+..++.-|++ +-++|+++++... +.+.+. . +.++++++..  .|+|++|+
T Consensus        25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~t   96 (361)
T 3u3x_A           25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAA   96 (361)
T ss_dssp             -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECC
T ss_pred             cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeC
Confidence            346899999999995 566777777888 5568999988654 445553 2 5689999975  89999975

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.31  E-value=0.005  Score=57.49  Aligned_cols=63  Identities=17%  Similarity=0.158  Sum_probs=50.1

Q ss_pred             CEEEEEcC----chHHHHHHHHHHhC--CCEE-EEEeCChhhHHH-HHhCCCc----ccCHHHHHH--hCCeeeecc
Q psy16115        110 KQVVLCGY----GEVGKGCCQSLKGL--GCVI-YITEIDPICALQ-ACMDGFS----VVKLNEVIR--TVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~----G~IG~~~a~~l~~~--G~~V-i~~d~~~~~~~~-a~~~g~~----~~~l~e~~~--~aDvvi~~~  172 (258)
                      -+|+|||+    |.||...+..++..  ++++ -++|+++.+.+. +.+.|+.    +.++++++.  +.|+|++|+
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~t  116 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV  116 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcC
Confidence            58999999    99999999999886  6775 578999887654 4455653    568999986  589999985

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.31  E-value=0.0036  Score=51.44  Aligned_cols=63  Identities=24%  Similarity=0.241  Sum_probs=47.3

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-----c---cCHHHHHHhCCeeeeccC
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-----V---VKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-----~---~~l~e~~~~aDvvi~~~~  173 (258)
                      ++|+|.|. |.||+.+++.|...|.+|+++++++.+.... ..++.     .   .++.++++++|+|+.+.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   76 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-NEHLKVKKADVSSLDEVCEVCKGADAVISAFN   76 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC-CTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc-cCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence            78999995 8899999999999999999999987654211 11221     2   235667788999998854

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.30  E-value=0.023  Score=50.71  Aligned_cols=93  Identities=14%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeecc
Q psy16115        106 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       106 ~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~~  172 (258)
                      .+.|.+|+++|-| ++..+.+..+..+|++|.++.+....     ...    +.+.|..   ..++++.++++|+|+.-.
T Consensus       176 ~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~  255 (340)
T 4ep1_A          176 TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDV  255 (340)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecC
Confidence            3789999999965 49999999999999999887553221     111    2244533   357999999999998842


Q ss_pred             ----C-----------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 ----G-----------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ----~-----------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                          +           ....++.+.++.+|++++|..++..
T Consensus       256 w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa  296 (340)
T 4ep1_A          256 WMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPA  296 (340)
T ss_dssp             C------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCC
T ss_pred             ccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCC
Confidence                1           1346888888889999999998853

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.26  E-value=0.0031  Score=52.58  Aligned_cols=63  Identities=13%  Similarity=0.094  Sum_probs=44.3

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc---cCHHHHHH----hCCeeeeccCc
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV---VKLNEVIR----TVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~---~~l~e~~~----~aDvvi~~~~~  174 (258)
                      |+++|.|. |-||+.+++.|...|++|++.++++.+...  ....+.   .+++++++    +.|+|+.+.+.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA--DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc--cccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            57999997 779999999999999999999998754311  011111   12344454    68999987643

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.26  E-value=0.01  Score=50.25  Aligned_cols=42  Identities=12%  Similarity=0.284  Sum_probs=36.9

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.||+++|.|.+. ||+.+++.|...|++|++.++++.+.+.
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   51 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEA   51 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46899999999766 9999999999999999999999876543

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.26  E-value=0.016  Score=47.89  Aligned_cols=40  Identities=15%  Similarity=0.163  Sum_probs=34.4

Q ss_pred             CCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        108 GGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       108 ~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+++++|.|.+ .||+.+++.|...|++|++.++++.+...
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~   44 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQA   44 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            57899999865 59999999999999999999998876543

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.25  E-value=0.012  Score=50.49  Aligned_cols=65  Identities=18%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhCC-CEEEEEeCChhhHH--HHHhCCCcc-----c---CHHHHHHhCCeeeeccC
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGLG-CVIYITEIDPICAL--QACMDGFSV-----V---KLNEVIRTVDIVVTATG  173 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~--~a~~~g~~~-----~---~l~e~~~~aDvvi~~~~  173 (258)
                      .++|+|.|. |.||+.+++.|...| .+|++.+|++.+..  .....+++.     .   ++.++++++|+|+.+++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            579999997 999999999999888 89999999876532  112234332     2   35566778999998764

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.25  E-value=0.0045  Score=57.46  Aligned_cols=64  Identities=17%  Similarity=0.255  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCchH--HHHHHHHHHh----CCCEEEEEeCChhhHHHHHhC---------CCc-ccCHHHHHHhCCeeeec
Q psy16115        108 GGKQVVLCGYGEV--GKGCCQSLKG----LGCVIYITEIDPICALQACMD---------GFS-VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~G~I--G~~~a~~l~~----~G~~Vi~~d~~~~~~~~a~~~---------g~~-~~~l~e~~~~aDvvi~~  171 (258)
                      +..+|+|||+|.+  |..+++.+..    .| +|+++|+++.+++.....         .+. ..++++++++||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4569999999997  5677776654    46 899999998775432211         111 24788999999999998


Q ss_pred             c
Q psy16115        172 T  172 (258)
Q Consensus       172 ~  172 (258)
                      .
T Consensus        83 i   83 (450)
T 3fef_A           83 I   83 (450)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.24  E-value=0.018  Score=49.19  Aligned_cols=42  Identities=26%  Similarity=0.442  Sum_probs=36.6

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~   48 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRA   48 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            36899999999765 9999999999999999999999876543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.24  E-value=0.016  Score=50.41  Aligned_cols=42  Identities=19%  Similarity=0.362  Sum_probs=37.3

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.|++++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~   70 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQ   70 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            47899999999765 9999999999999999999999877554

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.23  E-value=0.016  Score=52.09  Aligned_cols=93  Identities=20%  Similarity=0.193  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        106 MFGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       106 ~l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      .+.|.+|+++|-|  +++.+.+..+..+|++|.++.+....     ...    +.+.|..   ..++++.++++|+|+.-
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd  252 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTD  252 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEc
Confidence            4789999999986  79999999999999999988553221     111    2244543   45799999999999984


Q ss_pred             c----C-----------ccccccHHHHhcCC---CCcEEEecCCC
Q psy16115        172 T----G-----------NKNVVTREHMDKMK---NGCVVCNMGHS  198 (258)
Q Consensus       172 ~----~-----------~~~~i~~~~l~~~k---~g~~ivnvg~~  198 (258)
                      .    |           ....++.+.++.+|   ++++|..++..
T Consensus       253 ~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcLP~  297 (359)
T 2w37_A          253 VWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPA  297 (359)
T ss_dssp             CSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSCC
T ss_pred             ccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCCCC
Confidence            2    2           23567878888889   89999998864

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.22  E-value=0.018  Score=48.46  Aligned_cols=42  Identities=19%  Similarity=0.382  Sum_probs=36.3

Q ss_pred             ccCCCEEEEEcCc-hHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYG-EVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G-~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.+++++|.|.+ .||+.+++.|...|++|++.++++.+...
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~   46 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQE   46 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            3689999999965 49999999999999999999999876543

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=96.21  E-value=0.0036  Score=48.73  Aligned_cols=103  Identities=15%  Similarity=0.117  Sum_probs=65.3

Q ss_pred             CCCEEEEEcC----chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-cCHHHHHHhCCeeeeccC---cccccc
Q psy16115        108 GGKQVVLCGY----GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-VKLNEVIRTVDIVVTATG---NKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~----G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~~l~e~~~~aDvvi~~~~---~~~~i~  179 (258)
                      .-++|+|||+    |.+|..+++.++..|.+  +|+++|.+... .-.|... .+++++-...|+++++..   ...+++
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~-~i~G~~~~~sl~el~~~vDlavi~vp~~~~~~v~~   88 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGE-ELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLP   88 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTS-EETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccC-cCCCEEecCCHHHCCCCCCEEEEEeCHHHHHHHHH
Confidence            4579999999    79999999999999998  55556653110 1135543 367777678999999853   334453


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeee
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEK  216 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~  216 (258)
                       +..+. ..++++++.|.. ++...+..+...+.+.+
T Consensus        89 -~~~~~-gi~~i~~~~g~~-~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           89 -EVLAL-RPGLVWLQSGIR-HPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             -HHHHH-CCSCEEECTTCC-CHHHHHHHHHTTCCEEE
T ss_pred             -HHHHc-CCCEEEEcCCcC-HHHHHHHHHHcCCEEEc
Confidence             44443 334566665544 34444555555555544

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.20  E-value=0.0039  Score=53.36  Aligned_cols=68  Identities=18%  Similarity=0.237  Sum_probs=46.9

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccC---HHHHH-------HhCCeeeeccC
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVI-------RTVDIVVTATG  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~---l~e~~-------~~aDvvi~~~~  173 (258)
                      .+.||+++|.|.+. ||+.+|+.|...|++|++.+++............+..+   .++++       ...|+++.+++
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg  103 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAG  103 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            46899999999866 99999999999999999999886653222111222222   22222       25799998754

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.20  E-value=0.0092  Score=53.62  Aligned_cols=64  Identities=11%  Similarity=0.143  Sum_probs=47.6

Q ss_pred             CEEEEEc-CchHHHH-HH----HHHHhCC-CEE----------EEEeCChhhHHH-HHhCCCc--ccCHHHHHHh--CCe
Q psy16115        110 KQVVLCG-YGEVGKG-CC----QSLKGLG-CVI----------YITEIDPICALQ-ACMDGFS--VVKLNEVIRT--VDI  167 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~-~a----~~l~~~G-~~V----------i~~d~~~~~~~~-a~~~g~~--~~~l~e~~~~--aDv  167 (258)
                      -+|+||| +|.+|.. .+    ..++..+ ..+          .++|+++++... +.+.|..  +.++++++..  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999997 66    6666554 232          389999988654 4456763  4689999975  799


Q ss_pred             eeeccC
Q psy16115        168 VVTATG  173 (258)
Q Consensus       168 vi~~~~  173 (258)
                      |++|+.
T Consensus        87 V~i~tp   92 (383)
T 3oqb_A           87 FFDAAT   92 (383)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999853

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.20  E-value=0.0032  Score=54.97  Aligned_cols=67  Identities=13%  Similarity=0.150  Sum_probs=47.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHH--hCCeeeeccCccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIR--TVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~--~aDvvi~~~~~~~  176 (258)
                      +..+|+|+|+ |.+|+..++.++..|.++ ++..+|.+.. ....|.. +.+++++.+  ..|++++++....
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~-V~~V~p~~~g-~~~~G~~vy~sl~el~~~~~~D~viI~tP~~~   76 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKM-VGGVTPGKGG-TTHLGLPVFNTVREAVAATGATASVIYVPAPF   76 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTT-CEETTEEEESSHHHHHHHHCCCEEEECCCGGG
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeE-EEEeCCCccc-ceeCCeeccCCHHHHhhcCCCCEEEEecCHHH
Confidence            4578999999 999999999999889883 3344443210 1134554 347888887  7999999975443

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.19  E-value=0.018  Score=49.05  Aligned_cols=41  Identities=22%  Similarity=0.353  Sum_probs=36.2

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|++.++++.+..
T Consensus        18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~   59 (267)
T 1vl8_A           18 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEAS   59 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            47899999999765 999999999999999999999977654

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=96.19  E-value=0.0037  Score=59.05  Aligned_cols=68  Identities=22%  Similarity=0.198  Sum_probs=44.1

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-HhCCCccc---CHHH-HHHhCCeeeeccC
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSVV---KLNE-VIRTVDIVVTATG  173 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-~~~g~~~~---~l~e-~~~~aDvvi~~~~  173 (258)
                      .+.|++++|+|.|.+|+.++..|...|++|++++|++.+.+.. ...+....   ++++ .....|+++.+++
T Consensus       361 ~l~~k~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~ag  433 (523)
T 2o7s_A          361 PLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTS  433 (523)
T ss_dssp             -----CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSS
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCC
Confidence            4678999999999999999999999999999999998775543 23332222   2222 1223688888865

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.19  E-value=0.0094  Score=51.05  Aligned_cols=42  Identities=26%  Similarity=0.462  Sum_probs=37.1

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++.||+++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~   65 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQ   65 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            47899999999765 9999999999999999999999876543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.19  E-value=0.019  Score=48.24  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=36.0

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.||+++|.|.+. ||+.+++.|...|++|++.++++.+...
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~   46 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRA   46 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            5789999999765 9999999999999999999999876543

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.19  E-value=0.0095  Score=51.16  Aligned_cols=67  Identities=21%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCCh-------hhHHHH---HhCCCcc-----c---CHHHHHHhCCeee
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDP-------ICALQA---CMDGFSV-----V---KLNEVIRTVDIVV  169 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~-------~~~~~a---~~~g~~~-----~---~l~e~~~~aDvvi  169 (258)
                      +++|+|.|+ |.||+.+++.|...|.+|++.+|++       .+....   ...+++.     .   ++.++++++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            478999996 9999999999999999999999886       332211   1234432     1   3556677899999


Q ss_pred             eccCcc
Q psy16115        170 TATGNK  175 (258)
Q Consensus       170 ~~~~~~  175 (258)
                      .+.+..
T Consensus        82 ~~a~~~   87 (307)
T 2gas_A           82 CAAGRL   87 (307)
T ss_dssp             ECSSSS
T ss_pred             ECCccc
Confidence            986543

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.18  E-value=0.021  Score=50.67  Aligned_cols=93  Identities=14%  Similarity=0.161  Sum_probs=68.4

Q ss_pred             ccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhh-----HHH----HHhCCCc---ccCHHHHHHhCCeeeecc
Q psy16115        106 MFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPIC-----ALQ----ACMDGFS---VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       106 ~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~----a~~~g~~---~~~l~e~~~~aDvvi~~~  172 (258)
                      .+.|.+|+++|= +++..+.+..+..+|++|.++.+....     ...    +.+.|..   ..++++.++++|+|+.-.
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence            378999999996 459999999999999998887553211     111    1233432   358999999999998842


Q ss_pred             ----C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 ----G------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ----~------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                          +            ....++.+.++.+|++++|..++..
T Consensus       234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa  275 (323)
T 3gd5_A          234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPA  275 (323)
T ss_dssp             CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCC
T ss_pred             eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCC
Confidence                1            1246888889999999999998763

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.18  E-value=0.023  Score=48.68  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=36.0

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|+++++++.+..
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~   67 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACA   67 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            36899999999754 999999999999999999999887654

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.18  E-value=0.0015  Score=55.99  Aligned_cols=81  Identities=20%  Similarity=0.166  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHhc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMDK  185 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~  185 (258)
                      .-.+|+++|+|.||+.+++.  . +.+ +-+++   ++.   .+.|.. ..++++++.+.|+|+.|++.. .+.+...+.
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~---gelgv~a~~d~d~lla~pD~VVe~A~~~-av~e~~~~i   80 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RIS---KDIPGVVRLDEFQVPSDVSTVVECASPE-AVKEYSLQI   80 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSC---CCCSSSEECSSCCCCTTCCEEEECSCHH-HHHHHHHHH
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe---ccc---cccCceeeCCHHHHhhCCCEEEECCCHH-HHHHHHHHH
Confidence            45799999999999999998  4 776 45566   221   122554 346788777899999997544 343345666


Q ss_pred             CCCCcEEEecCCC
Q psy16115        186 MKNGCVVCNMGHS  198 (258)
Q Consensus       186 ~k~g~~ivnvg~~  198 (258)
                      ++.|.-++-++.+
T Consensus        81 L~aG~dvv~~S~g   93 (253)
T 1j5p_A           81 LKNPVNYIIISTS   93 (253)
T ss_dssp             TTSSSEEEECCGG
T ss_pred             HHCCCCEEEcChh
Confidence            7888777777765

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.17  E-value=0.011  Score=52.25  Aligned_cols=67  Identities=21%  Similarity=0.332  Sum_probs=49.5

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhC-CC-EEEEEeCChhhHHHHHh----CCCc-----cc---CHHHHHHhCCeeeec
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGL-GC-VIYITEIDPICALQACM----DGFS-----VV---KLNEVIRTVDIVVTA  171 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~-G~-~Vi~~d~~~~~~~~a~~----~g~~-----~~---~l~e~~~~aDvvi~~  171 (258)
                      +.|++|+|.|. |.||+.+++.|... |. +|+++++++.+......    .++.     ..   .+.+++++.|+||-+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~   98 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA   98 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence            58999999995 88999999999998 98 99999998776433211    1222     12   244556688999987


Q ss_pred             cC
Q psy16115        172 TG  173 (258)
Q Consensus       172 ~~  173 (258)
                      ++
T Consensus        99 Aa  100 (344)
T 2gn4_A           99 AA  100 (344)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.17  E-value=0.021  Score=51.40  Aligned_cols=92  Identities=16%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             cCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhhH-------HH----HHhCCCc---ccCHHHHHHhCCeeee
Q psy16115        107 FGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPICA-------LQ----ACMDGFS---VVKLNEVIRTVDIVVT  170 (258)
Q Consensus       107 l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~~-------~~----a~~~g~~---~~~l~e~~~~aDvvi~  170 (258)
                      +.|.+|+++|=|  +++.+.+..+..+|++|.++.+.....       ..    +.+.|..   ..++++.++++|+|+.
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt  257 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT  257 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence            789999999988  599999999999999999886532221       11    2334533   3579999999999987


Q ss_pred             cc----C-------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        171 AT----G-------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       171 ~~----~-------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      -.    +             .+..++.+.++.+|++++|..++..
T Consensus       258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP~  302 (365)
T 4amu_A          258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLPA  302 (365)
T ss_dssp             CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSCC
T ss_pred             cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCC
Confidence            21    1             1345788888889999999988764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.17  E-value=0.0094  Score=51.80  Aligned_cols=67  Identities=19%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             cCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-------CCCc------c---cCHHHHHHhCCeee
Q psy16115        107 FGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACM-------DGFS------V---VKLNEVIRTVDIVV  169 (258)
Q Consensus       107 l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-------~g~~------~---~~l~e~~~~aDvvi  169 (258)
                      +.|++|+|.|. |.||+.+++.|...|.+|+++++++.+......       .++.      .   ..+++++++.|+||
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            47899999997 889999999999999999999998765432111       1221      1   12445566789998


Q ss_pred             eccC
Q psy16115        170 TATG  173 (258)
Q Consensus       170 ~~~~  173 (258)
                      -+.+
T Consensus        89 h~A~   92 (342)
T 1y1p_A           89 HIAS   92 (342)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            8754

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.17  E-value=0.01  Score=51.15  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=36.9

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|+++++++.++..
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   47 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAE   47 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            36899999999765 9999999999999999999999876544

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.16  E-value=0.016  Score=49.64  Aligned_cols=42  Identities=17%  Similarity=0.236  Sum_probs=34.1

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+.||+++|.|.+. ||+.+++.|...|++|+++++++.+...
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   63 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSA   63 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            35899999999765 9999999999999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1v8ba1	163	c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas	2e-51
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	1e-42
d1v8ba2	313	c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystei	3e-28
d1li4a2	267	c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystei	2e-24
d2fy8a1	129	c.2.1.9 (A:116-244) Potassium channel-related prot	2e-05
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	5e-05
d1id1a_	153	c.2.1.9 (A:) Rck domain from putative potassium ch	2e-04
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	3e-04
d1leha1	230	c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu	5e-04
d1lssa_	132	c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus ja	0.002
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	0.004

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  163 bits (413), Expect = 2e-51
 Identities = 69/132 (52%), Positives = 91/132 (68%), Gaps = 1/132 (0%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            L R+TD +  GK VV+CGYG+VGKGC  S+KGLG  +YITEIDPICA+QA M+GF+VV 
Sbjct: 12  GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVT 71

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEK 216
           L+E++   D  +T TGN +V+  EH+ KMKN  VV N+GH + EI VN L     +  E 
Sbjct: 72  LDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIEN 131

Query: 217 VRSQVDHVIWPD 228
           V+ QVD +  P+
Sbjct: 132 VKPQVDRITLPN 143

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  140 bits (354), Expect = 1e-42
 Identities = 57/131 (43%), Positives = 83/131 (63%)

Query: 98  SLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK 157
            +KR+TDVM  GK  V+ GYG+VGKGC Q+L+G G  + ITEIDPI ALQA M+G+ V  
Sbjct: 13  GIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTT 72

Query: 158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKV 217
           ++E  +  +I VT TG  +++   H ++MK+  +VCN+GH + EIDV  L    +    +
Sbjct: 73  MDEACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNI 132

Query: 218 RSQVDHVIWPD 228
           + QVD     +
Sbjct: 133 KPQVDRYRLKN 143

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  107 bits (269), Expect = 3e-28
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 31  QALALIELF-NAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKA 89
           Q  A ++L+ N    +Y++ VYLLPK +DE VA  HL   +A LTEL D Q +++G+NK+
Sbjct: 244 QTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKS 303

Query: 90  GPFKPSYY 97
           GPFK + Y
Sbjct: 304 GPFKSNEY 311

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (239), Expect = 2e-24
 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)

Query: 31  QALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAG 90
           Q +A IEL+  P  +Y   V+ LPKK+DE VA  HL   +  LT+L+++QA+Y+G++  G
Sbjct: 200 QVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDG 258

Query: 91  PFKPSYY 97
           PFKP +Y
Sbjct: 259 PFKPDHY 265

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 129

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 41.0 bits (95), Expect = 2e-05
 Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 20/128 (15%)

Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---------LNE 160
           + VV+CG+ E    C + L+G    +++   D     +    G + V             
Sbjct: 1   RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKA 58

Query: 161 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 220
            +R    V+    + +      +   K    V  +  +    ++  LR          + 
Sbjct: 59  NVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLR---------MAG 109

Query: 221 VDHVIWPD 228
            D VI P 
Sbjct: 110 ADQVISPF 117

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 19/108 (17%), Positives = 33/108 (30%)

Query: 107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVD 166
             G  V++ G G VG          G  + + + D      A   G + V L +V+ T  
Sbjct: 25  LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPC 84

Query: 167 IVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTW 214
            V        V+T E    +    V     +   +   + +       
Sbjct: 85  DVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGIL 132

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 13/130 (10%), Positives = 34/130 (26%), Gaps = 22/130 (16%)

Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA------------CMDGFSVVKLN 159
            ++CG+  +       L   G  + +    P   ++               D      L 
Sbjct: 6   FIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLK 65

Query: 160 EV-IRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR 218
           +  I     ++  + N        +        V  +   +   ++N ++          
Sbjct: 66  KAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIK---------M 116

Query: 219 SQVDHVIWPD 228
              D ++ P 
Sbjct: 117 VHPDIILSPQ 126

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 18/128 (14%)

Query: 110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---------FSVVKLNE 160
           KQ  + G G  G    + L  +G  +   +I+                         L+ 
Sbjct: 1   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60

Query: 161 VIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQ 220
            IR  + V+ A G     +      +K   +      +        L          +  
Sbjct: 61  GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLE---------KIG 111

Query: 221 VDHVIWPD 228
            D +I P+
Sbjct: 112 ADRIIHPE 119

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 6/105 (5%)

Query: 96  YYSLKRSTDVMFG-----GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM 150
           Y  +K +    FG     G  V + G G V K  C+ L   G  + +T+++      A  
Sbjct: 21  YRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA 80

Query: 151 DGFSVVKLNEVIRTVDI-VVTATGNKNVVTREHMDKMKNGCVVCN 194
           +  +       I  V   +        V+    + ++K   +  +
Sbjct: 81  EEGADAVAPNAIYGVTCDIFAPCALGAVLNDFTIPQLKAKVIAGS 125

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 132

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 18/117 (15%), Positives = 40/117 (34%)

Query: 112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA 171
           +++ G G VG    +SL   G  I + +ID     +A  +  ++V   +  +   +    
Sbjct: 3   IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAG 62

Query: 172 TGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPD 228
             + ++       +  N               +  +   +      R  VD V+ P+
Sbjct: 63  IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE 119

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 156 VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLR 208
                 +   D+V++       +T E + K KN  +    G  +  +D+ S  
Sbjct: 81  SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAI 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.93
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.92
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.91
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.91
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.91
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.9
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.9
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.88
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.88
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.85
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.58
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.57
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.24
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.2
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	99.19
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.15
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.15
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	99.15
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.14
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.13
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.12
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.08
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.08
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	99.07
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.05
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.05
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.03
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.02
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.99
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	98.97
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.9
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.89
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.87
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	98.86
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.86
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.84
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	98.81
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.78
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.75
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.73
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.7
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.65
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	98.65
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.63
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.63
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	98.61
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.61
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.58
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.57
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.56
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.55
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.55
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	98.47
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.45
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.43
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.37
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.33
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.28
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	98.24
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.24
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.23
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	98.22
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.18
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.16
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.11
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.11
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.09
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.06
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.02
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.92
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.91
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.9
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.84
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.82
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.79
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.79
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	97.75
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.75
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.74
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.72
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.72
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.7
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.69
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.67
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.66
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.66
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.65
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.65
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.65
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.61
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.59
d1v8ba2	313	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.56
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.56
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.54
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.54
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.52
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.5
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.49
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.47
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.44
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.4
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.38
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.34
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.33
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.32
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.28
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.28
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.26
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	97.24
d1li4a2	267	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.22
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.21
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.21
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.19
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.18
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.18
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.18
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.16
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.15
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.1
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	97.09
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	97.09
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.08
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.06
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.04
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.97
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.96
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.96
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	96.96
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	96.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.89
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.89
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.88
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.88
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.87
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.87
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.85
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.83
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.79
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.79
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.78
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.76
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.76
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.76
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.74
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.72
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.72
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.71
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.71
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.71
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.7
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.69
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.69
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.68
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.67
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	96.66
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.64
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.64
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.62
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.62
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.62
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	96.61
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.61
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.6
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.6
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.59
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.59
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.57
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.57
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.56
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.54
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.53
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.51
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.51
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.51
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.5
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.46
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.46
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.45
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	96.45
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.42
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.42
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.41
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.41
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.4
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.39
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.37
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.37
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.37
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.36
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.36
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.33
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.3
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.29
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.29
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.25
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.24
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.19
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	96.15
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.1
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.07
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.01
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	96.0
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.97
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.97
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.94
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.93
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.89
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.85
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.83
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.82
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.77
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	95.73
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.71
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.7
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.67
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	95.59
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.58
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.5
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.48
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.48
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.47
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.46
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	95.32
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.3
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.29
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.18
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.17
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.15
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	95.07
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.04
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	94.99
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	94.97
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.96
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.96
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.93
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.92
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	94.82
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	94.81
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.8
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.79
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.73
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	94.7
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.69
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	94.64
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.62
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.6
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.58
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.57
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	94.5
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.46
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.46
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.45
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.45
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.37
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.35
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.23
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	94.2
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.19
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.18
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.17
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	94.15
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.15
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.12
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.11
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	94.1
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.06
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	94.05
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.04
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	94.04
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	94.04
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.0
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.99
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	93.99
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.98
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.98
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	93.95
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	93.92
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	93.91
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.9
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	93.82
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.82
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	93.78
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.65
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	93.63
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.61
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.6
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.59
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	93.57
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	93.53
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.38
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.31
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.24
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.06
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	93.03
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	92.99
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.98
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	92.97
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.97
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	92.9
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.89
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	92.86
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	92.85
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	92.84
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	92.84
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.79
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	92.78
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.76
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.46
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	92.37
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	92.29
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	92.24
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.23
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.14
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	92.13
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.05
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	92.04
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	91.94
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	91.75
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	91.72
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	91.72
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.66
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	91.56
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.51
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	91.4
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	91.3
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	91.13
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.1
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.9
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	90.88
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	90.87
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.86
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	90.6
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	90.56
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.49
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	90.47
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	90.44
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	90.36
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.34
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	90.33
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.19
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	90.15
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	89.89
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.82
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	89.67
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	89.66
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	89.61
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	89.52
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.37
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	89.34
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	89.33
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	89.04
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.77
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	88.39
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	88.25
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	88.16
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	87.63
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	87.54
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.27
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	87.11
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	86.84
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	86.82
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	86.66
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	86.65
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	86.59
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	86.46
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	86.2
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	86.1
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	85.47
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	85.33
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.31
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	84.83
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	84.82
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	84.79
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	84.66
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.62
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.56
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	84.39
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.67
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.19
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	83.12
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	82.53
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	82.45
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.39
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.07
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	82.02
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.9
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	81.86
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	81.62
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	81.18
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	81.02
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	80.98
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	80.55
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	80.44
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	80.44
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	80.1

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.93  E-value=5.4e-26  Score=188.21  Aligned_cols=182  Identities=14%  Similarity=0.170  Sum_probs=138.3

Q ss_pred             HHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhh--ccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE
Q psy16115         59 EYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSL--KRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY  136 (258)
Q Consensus        59 ~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi  136 (258)
                      ++|||+++.+++...|++.....    ..+.|.|.......  ....+.++.|+||||+|+|.||+.+|++++.|||+|+
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~----~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~   76 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQ----ALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVL   76 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHH----HHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHH----HHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeecccccee
Confidence            57999999999888888765432    23456665433211  1123567999999999999999999999999999999


Q ss_pred             EEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---Chhhchhhhc
Q psy16115        137 ITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR  208 (258)
Q Consensus       137 ~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~  208 (258)
                      +||++...... ...++. ..+++++++.||+|++|    ..|.++++++.|+.||+++++||+|||   |+++++++|+
T Consensus        77 ~~d~~~~~~~~-~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  155 (193)
T d1mx3a1          77 FYDPYLSDGVE-RALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALK  155 (193)
T ss_dssp             EECTTSCTTHH-HHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHH
T ss_pred             eccCcccccch-hhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHH
Confidence            99987655332 223443 55899999999999997    368899999999999999999999999   9999999999


Q ss_pred             CCCceeeeeccCcce-eecCCCccCCCceeEEecCCChhH
Q psy16115        209 TPDLTWEKVRSQVDH-VIWPDVNLKNNTVIDLFRKPKSRL  247 (258)
Q Consensus       209 ~~~i~~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~~~  247 (258)
                      ++++...++....++ .+....++.+...+  +.+||++|
T Consensus       156 ~~~i~~a~lDV~~~EP~~~~~~~l~~~~nv--i~TPHiA~  193 (193)
T d1mx3a1         156 EGRIRGAALDVHESEPFSFSQGPLKDAPNL--ICTPHAAW  193 (193)
T ss_dssp             HTSEEEEEESCCSSSSCCTTSSTTTTCSSE--EECSSCTT
T ss_pred             cCCceEEEEEcCCCCCCCCCchhHHcCCCE--EEcCCcCc
Confidence            999977666443322 23334555555443  34799886

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=179.54  Aligned_cols=146  Identities=40%  Similarity=0.690  Sum_probs=131.4

Q ss_pred             cchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccC
Q psy16115         94 PSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus        94 ~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~  173 (258)
                      ..+.+++|..+..+.||+++|+|+|.||+.+|+.++.+|++|+++|++|.+..+|...|+++.++++++..+|++++|||
T Consensus         9 S~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTG   88 (163)
T d1li4a1           9 SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTG   88 (163)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSS
T ss_pred             hHHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCC
Confidence            44566777777889999999999999999999999999999999999999998999999999999999999999999999


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      ++++|+.+.|+.||+|+++.|+|..|.|+++++|.+........++++++|.+|++     .-+.|++.++
T Consensus        89 n~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~l~dG-----~~i~lLaeGr  154 (163)
T d1li4a1          89 CIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYRLKNG-----RRIILLAEGR  154 (163)
T ss_dssp             CSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEECTTS-----CEEEEEGGGS
T ss_pred             CccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEEeCCC-----CEEEEEeCCC
Confidence            99999999999999999999999999999999998766677788999999997664     5577777554

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=2.4e-24  Score=177.01  Aligned_cols=167  Identities=16%  Similarity=0.195  Sum_probs=132.2

Q ss_pred             hHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE
Q psy16115         58 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI  137 (258)
Q Consensus        58 ~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~  137 (258)
                      ..+|||+++++++...|++.....    ..+.|.|....     ..+.++.|++++|+|+|.||+.++++++.||++|++
T Consensus         2 ~~sVAE~~~~liL~~~R~i~~~~~----~~~~~~W~~~~-----~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~   72 (184)
T d1ygya1           2 IHSAAEHALALLLAASRQIPAADA----SLREHTWKRSS-----FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVA   72 (184)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCGGG-----CCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             chHHHHHHHHHHHHHHcCHHHHHH----HHHhCCCCccc-----cccccccceeeeeccccchhHHHHHHhhhccceEEe
Confidence            457999999999989998876443    23456664321     124568999999999999999999999999999999


Q ss_pred             EeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115        138 TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP  210 (258)
Q Consensus       138 ~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~  210 (258)
                      ||++..+. .....++...++++++++||+|++|    ..|.++++++.|+.||+++++||+|||   |+++++++|+++
T Consensus        73 ~d~~~~~~-~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~  151 (184)
T d1ygya1          73 YDPYVSPA-RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG  151 (184)
T ss_dssp             ECTTSCHH-HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred             ecCCCChh-HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcC
Confidence            99876543 3344567778999999999999998    478899999999999999999999999   999999999999


Q ss_pred             CceeeeeccCcceeecCCCccCCCc
Q psy16115        211 DLTWEKVRSQVDHVIWPDVNLKNNT  235 (258)
Q Consensus       211 ~i~~~~~~~~~~~~~~~~~~l~~~~  235 (258)
                      ++...++..+..+ +++++++-+..
T Consensus       152 ~i~~a~lDV~~~E-P~~~~~l~~~~  175 (184)
T d1ygya1         152 HVRAAGLDVFATE-PCTDSPLFELA  175 (184)
T ss_dssp             SEEEEEESSCSSS-SCSCCGGGGCT
T ss_pred             cEeEEEEeCCCCC-CCCCchHhcCC
Confidence            9987766443322 33444444333

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.91  E-value=3.2e-24  Score=177.16  Aligned_cols=181  Identities=9%  Similarity=0.124  Sum_probs=134.0

Q ss_pred             hhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEE
Q psy16115         57 MDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIY  136 (258)
Q Consensus        57 ~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi  136 (258)
                      ++.++||+++.+++...|++......    .+.|.|.....  ....+.++.|+++||+|+|.||+.++++++.||++|+
T Consensus         1 ~t~AvAE~ai~liL~~~R~i~~~~~~----~r~g~w~~~~~--~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~   74 (191)
T d1gdha1           1 VTVATAEIAMLLLLGSARRAGEGEKM----IRTRSWPGWEP--LELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDID   74 (191)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHH----HHTTCCCCCCT--TTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCHHHHHHH----HHcCCCCcCCc--cccccceecccceEEeecccchHHHHHHHHhhccccc
Confidence            36789999999999999988764432    23444532111  1112456899999999999999999999999999999


Q ss_pred             EEeCChhhHHHH-HhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---Chhhchhhhc
Q psy16115        137 ITEIDPICALQA-CMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLR  208 (258)
Q Consensus       137 ~~d~~~~~~~~a-~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~  208 (258)
                      +||++....... ...+....+++++++.||+|++|    ..|.++|+++.|+.||+|+++||+|||   |+++++++|+
T Consensus        75 ~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~  154 (191)
T d1gdha1          75 YFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALE  154 (191)
T ss_dssp             EECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHH
T ss_pred             cccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHH
Confidence            999876543332 23344567899999999999997    378899999999999999999999999   9999999999


Q ss_pred             CCCceeeeeccCcceeecCCCccCCCceeEEecCCChh
Q psy16115        209 TPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSR  246 (258)
Q Consensus       209 ~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  246 (258)
                      +|++...+...+..+ +.+.+.+-....+  +-+||.+
T Consensus       155 ~g~i~~a~lDV~~~E-P~~~~~l~~~~nv--i~TPHia  189 (191)
T d1gdha1         155 AGRLAYAGFDVFAGE-PNINEGYYDLPNT--FLFPHIG  189 (191)
T ss_dssp             HTSEEEEEESCCTTT-TSCCTTGGGCTTE--EECSSCT
T ss_pred             cCCceEEEEECCCCC-CCCCchHHcCCCE--EECCccc
Confidence            999976665433222 2233333333322  2357753

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.91  E-value=1.7e-24  Score=179.64  Aligned_cols=150  Identities=16%  Similarity=0.198  Sum_probs=119.8

Q ss_pred             hHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE
Q psy16115         58 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI  137 (258)
Q Consensus        58 ~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~  137 (258)
                      +.+|||+++.+++..+|++......    .+.|.|..  .   ...+.++.|+||||+|+|.||+.+|+++++||++|++
T Consensus         1 p~aVAE~~l~~~l~l~r~~~~~~~~----~~~~~~~w--~---~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~   71 (197)
T d1j4aa1           1 PNAIAEHAAIQAARILRQDKAMDEK----VARHDLRW--A---PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVIT   71 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHH----HHTTBCCC--T---TCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCcHHHHHH----HHhCCCCc--C---CCcCccccCCeEEEecccccchhHHHhHhhhcccccc
Confidence            4578999888888787876543322    12233321  1   1125678999999999999999999999999999999


Q ss_pred             EeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115        138 TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP  210 (258)
Q Consensus       138 ~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~  210 (258)
                      ||+.....  ....++...++++++++||+|++|    ..|.++++++.|+.||+++++||+|||   |+++++++|++|
T Consensus        72 ~d~~~~~~--~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  149 (197)
T d1j4aa1          72 YDIFRNPE--LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG  149 (197)
T ss_dssp             ECSSCCHH--HHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             cCcccccc--cccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcc
Confidence            99876543  234466677899999999999998    368899999999999999999999999   999999999999


Q ss_pred             Cceeeeec
Q psy16115        211 DLTWEKVR  218 (258)
Q Consensus       211 ~i~~~~~~  218 (258)
                      ++...++.
T Consensus       150 ~i~~a~lD  157 (197)
T d1j4aa1         150 KIFGYAMD  157 (197)
T ss_dssp             SEEEEEES
T ss_pred             cchheeee
Confidence            99766553

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.90  E-value=2.8e-24  Score=171.12  Aligned_cols=146  Identities=48%  Similarity=0.812  Sum_probs=130.2

Q ss_pred             cchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccC
Q psy16115         94 PSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus        94 ~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~  173 (258)
                      +.+.+++|.++..+.||+++|+|+|.+|+.+|+.++.+|++|++++++|-+..+|..+|+++.+++++++.+|+++++||
T Consensus         8 S~~d~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG   87 (163)
T d1v8ba1           8 SLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG   87 (163)
T ss_dssp             HHHHHHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS
T ss_pred             hHHHHHHHHhCceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC
Confidence            34566777777778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCCChhhchhhhcC-CCceeeeeccCcceeecCCCccCCCceeEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRT-PDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPK  244 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~  244 (258)
                      +.++|+.+.|+.||+|+++.|+|..|.|+++++|.+ ........++++++|.+|++     .-+.|++.++
T Consensus        88 n~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~~~~~~~~~vrp~V~~y~lpdG-----~~i~lLaeGr  154 (163)
T d1v8ba1          88 NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRITLPNG-----NKIIVLARGR  154 (163)
T ss_dssp             SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEETTEEEEECTTS-----CEEEEEGGGS
T ss_pred             CCccccHHHHHHhhCCeEEEeccccchhhhhHHHHhCcCcceeeecCCceEEEeCCC-----CEEEEEECCc
Confidence            999999999999999999999999999999998865 35677888999999996654     5566776543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.90  E-value=6.5e-25  Score=182.58  Aligned_cols=150  Identities=19%  Similarity=0.302  Sum_probs=122.1

Q ss_pred             hHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE
Q psy16115         58 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI  137 (258)
Q Consensus        58 ~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~  137 (258)
                      +.+|||+++..++...|++.....    ..+.|.|....    ...+.++.|+||||+|+|.||+.+|+++++||++|++
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~----~~~~g~w~~~~----~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~   73 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQA----QLQAGDYEKAG----TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIA   73 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHH----HHHTTCHHHHT----CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHH----HHHhCCCCccc----Ccccccccceeeeeeecccccccccccccccceeeec
Confidence            468999999999888888765433    23455553211    1124578999999999999999999999999999999


Q ss_pred             EeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115        138 TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP  210 (258)
Q Consensus       138 ~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~  210 (258)
                      ||+++...   ........+++++++.||+|++|    ..|.++++++.|+.||+++++||+|||   |+++++++|++|
T Consensus        74 ~d~~~~~~---~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g  150 (199)
T d1dxya1          74 YDPYPMKG---DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG  150 (199)
T ss_dssp             ECSSCCSS---CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred             cCCccchh---hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcC
Confidence            99876542   22345567899999999999997    368889999999999999999999999   899999999999


Q ss_pred             Cceeeeec
Q psy16115        211 DLTWEKVR  218 (258)
Q Consensus       211 ~i~~~~~~  218 (258)
                      ++...+..
T Consensus       151 ~i~ga~lD  158 (199)
T d1dxya1         151 KLAGVGID  158 (199)
T ss_dssp             SEEEEEES
T ss_pred             CcceEecc
Confidence            99776654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.88  E-value=3.8e-23  Score=170.32  Aligned_cols=152  Identities=11%  Similarity=0.096  Sum_probs=122.4

Q ss_pred             HHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEe
Q psy16115         60 YVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE  139 (258)
Q Consensus        60 ~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d  139 (258)
                      +|||+++.+++...|++.....    ..+.|.|......   ..+.++.|++++|+|+|.||+.++++++.||++|.++|
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~----~~~~g~w~~~~~~---~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d   74 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHE----WARKGGWNIADCV---SHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTD   74 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHH----HHHTTCCCHHHHH---TTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEEC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHH----HHHhCCCCCcccC---CcceeccccceeeccccccchhhhhhhhccCceEEEEe
Confidence            6899999988888888764332    2345667422111   12456899999999999999999999999999999999


Q ss_pred             CChhhHHHHHhCCC-cccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCC
Q psy16115        140 IDPICALQACMDGF-SVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPD  211 (258)
Q Consensus       140 ~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~  211 (258)
                      +...........+. ...++++++++||+|++|    ..|.++++++.|+.||+|+++||+|||   |+++++++|++|+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~  154 (188)
T d2naca1          75 RHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGR  154 (188)
T ss_dssp             SSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTS
T ss_pred             eccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCC
Confidence            87654433333343 466899999999999997    378899999999999999999999999   9999999999999


Q ss_pred             ceeeeec
Q psy16115        212 LTWEKVR  218 (258)
Q Consensus       212 i~~~~~~  218 (258)
                      +....+.
T Consensus       155 i~ga~lD  161 (188)
T d2naca1         155 LAGYAGD  161 (188)
T ss_dssp             EEEEEES
T ss_pred             ceeEEEe
Confidence            9876654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.88  E-value=2.4e-23  Score=170.52  Aligned_cols=147  Identities=20%  Similarity=0.212  Sum_probs=119.6

Q ss_pred             HHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEE
Q psy16115         59 EYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYIT  138 (258)
Q Consensus        59 ~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~  138 (258)
                      ++|||+++.+++...|++......    .+.|.|.....      ...+.|++|||+|+|.||+.+++.++.||++|+++
T Consensus         2 ~aVAE~~~~liL~~~R~i~~~~~~----~~~~~w~~~~~------~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~   71 (181)
T d1qp8a1           2 DAVAEFALALLLAPYKRIIQYGEK----MKRGDYGRDVE------IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGF   71 (181)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHH----HHTTCCCCCSC------CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEE
T ss_pred             chHHHHHHHHHHHHHhCHHHHHHH----HHcCCCCCCCC------CCcccCceEEEeccccccccceeeeeccccccccc
Confidence            679999999999888888654332    33455643221      12479999999999999999999999999999999


Q ss_pred             eCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCC
Q psy16115        139 EIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPD  211 (258)
Q Consensus       139 d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~  211 (258)
                      |+++...     ......+++++++.||+|++|    ..|.++++++.|+.||+++++||+||+   |+++++++|++++
T Consensus        72 d~~~~~~-----~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~  146 (181)
T d1qp8a1          72 SRTPKEG-----PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERP  146 (181)
T ss_dssp             CSSCCCS-----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCT
T ss_pred             ccccccc-----ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCc
Confidence            9886531     112345799999999999997    378899999999999999999999999   9999999999999


Q ss_pred             ceeeeeccC
Q psy16115        212 LTWEKVRSQ  220 (258)
Q Consensus       212 i~~~~~~~~  220 (258)
                      +.......+
T Consensus       147 i~~aalDV~  155 (181)
T d1qp8a1         147 QFIFASDVW  155 (181)
T ss_dssp             TCEEEESCC
T ss_pred             EEEEEEecC
Confidence            987666544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.6e-21  Score=160.50  Aligned_cols=148  Identities=20%  Similarity=0.283  Sum_probs=118.1

Q ss_pred             hHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE
Q psy16115         58 DEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI  137 (258)
Q Consensus        58 ~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~  137 (258)
                      +.+|||+++..++...|++......    .+.|.|.....     .+.++.|++|||+|+|.||+.+|++++.||++|++
T Consensus         2 a~aVAE~~l~~il~l~R~~~~~~~~----~~~~~w~~~~~-----~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~   72 (188)
T d1sc6a1           2 TRSVAELVIGELLLLLRGVPEANAK----AHRGVGNKLAA-----GSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYF   72 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHH----HHHTCCC----------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHHHHHHhChHHHHHH----HHhCCCccccc-----ccccccceEEEEeecccchhhhhhhcccccceEee
Confidence            5789999999888888887654332    23444532211     13468999999999999999999999999999999


Q ss_pred             EeCChhhHHHHHhCCCcccCHHHHHHhCCeeeec----cCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115        138 TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTA----TGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP  210 (258)
Q Consensus       138 ~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~----~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~  210 (258)
                      ||++.....   .......+++++++.||+|++|    ..|.++++++.|+.||+++++||+|||   |+++++++|+++
T Consensus        73 ~d~~~~~~~---~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~  149 (188)
T d1sc6a1          73 YDIENKLPL---GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASK  149 (188)
T ss_dssp             ECSSCCCCC---TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred             ccccccchh---hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcC
Confidence            998654321   1223456899999999999997    367799999999999999999999999   999999999999


Q ss_pred             Cceeeee
Q psy16115        211 DLTWEKV  217 (258)
Q Consensus       211 ~i~~~~~  217 (258)
                      ++....+
T Consensus       150 ~~~~a~l  156 (188)
T d1sc6a1         150 HLAGAAI  156 (188)
T ss_dssp             SEEEEEE
T ss_pred             CceEEEE
Confidence            9976655

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.2e-16  Score=124.13  Aligned_cols=124  Identities=16%  Similarity=0.222  Sum_probs=101.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHHHH--------hCCeeeecc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEVIR--------TVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~--------~aDvvi~~~  172 (258)
                      +|++|+|+|+|+||...++.++.+|+ +|+++|+++.+++.+++.|++.      .+..+..+        ++|++++|+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            78999999999999999999999999 7999999999999999998753      13333322        479999999


Q ss_pred             CccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCcceeecCCCccC
Q psy16115        173 GNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLK  232 (258)
Q Consensus       173 ~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~  232 (258)
                      +....++ ..++.++++++++.+|..  +...+...+..+++++.++..+.+.|.-..++++
T Consensus       106 G~~~~~~-~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~~~~~~~al~li~  166 (171)
T d1pl8a2         106 GAEASIQ-AGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLA  166 (171)
T ss_dssp             CCHHHHH-HHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCHHHHHHHHH
T ss_pred             CCchhHH-HHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCCHhHHHHHHHHHH
Confidence            9998886 899999999999999987  3455666666789999999877767773333333

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.57  E-value=1.3e-15  Score=121.79  Aligned_cols=117  Identities=17%  Similarity=0.216  Sum_probs=98.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--------CHHH---HHH-----hCCeeeec
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--------KLNE---VIR-----TVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--------~l~e---~~~-----~aDvvi~~  171 (258)
                      +|++|+|+|.|+||...++.++.+|++|+++|+++.+++.+++.|++..        +..+   .++     ++|+++.|
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            7999999999999999999999999999999999999998988886421        1222   222     37999999


Q ss_pred             cCccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCcceee
Q psy16115        172 TGNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQVDHVI  225 (258)
Q Consensus       172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~~~~~  225 (258)
                      ++.+..++ +.++.++++++++.+|.+  +...+...+..+++++.++..+.++|.
T Consensus       106 ~g~~~~~~-~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~~~~~~  160 (170)
T d1e3ja2         106 SGNEKCIT-IGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYP  160 (170)
T ss_dssp             SCCHHHHH-HHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCHH
T ss_pred             CCChHHHH-HHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECCHHHHH
Confidence            99998886 889999999999999988  344566678889999999877776776

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.24  E-value=1.7e-11  Score=96.99  Aligned_cols=134  Identities=15%  Similarity=0.188  Sum_probs=95.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcccccc------HHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------REHM  183 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~------~~~l  183 (258)
                      +|||||+|.||..+|+.|...|.+|++||+++.+.+...+.+.. ..++.+.++++|+|++|..+...+.      ...+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~   81 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGII   81 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchh
Confidence            69999999999999999999999999999999988777777765 4578999999999999965443332      1356


Q ss_pred             hcCCCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        184 DKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      ..+++|.+++|.+....+   ...+.+..+.++..+......     ...-.+++...++.+++..|.+
T Consensus        82 ~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg-----~~~a~~g~l~~~~gG~~~~~~~  145 (161)
T d1vpda2          82 EGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGG-----EPKAIDGTLSVMVGGDKAIFDK  145 (161)
T ss_dssp             HHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESH-----HHHHHHTCEEEEEESCHHHHHH
T ss_pred             hccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCC-----hhHHhcCCeEEEEcCCHHHHHH
Confidence            678999999999988332   234466666666554311110     1111234555667767666543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=2.9e-12  Score=103.30  Aligned_cols=117  Identities=21%  Similarity=0.267  Sum_probs=92.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHHH---H-H-----hCCeeeec
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNEV---I-R-----TVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~---~-~-----~aDvvi~~  171 (258)
                      +|++|+|+|+|+||..+++.++.+|+ +|+++|+++.+.+.+++.|++.      .+..+.   + +     +.|+|+.|
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~  107 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  107 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeec
Confidence            79999999999999999999999998 7999999999999999998752      123222   2 1     37999999


Q ss_pred             cCccccccHHHHhcCCCCcEEEecCCC--Chhhc---hhhhcCCCceeeeeccCc-ceee
Q psy16115        172 TGNKNVVTREHMDKMKNGCVVCNMGHS--NTEID---VNSLRTPDLTWEKVRSQV-DHVI  225 (258)
Q Consensus       172 ~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~---~~~l~~~~i~~~~~~~~~-~~~~  225 (258)
                      ++.+..+. +.++.++++++++.+|.+  +.+..   ...+..+++++.++..+. ++|.
T Consensus       108 vG~~~~~~-~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~~~~~~  166 (182)
T d1vj0a2         108 TGDSRALL-EGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFV  166 (182)
T ss_dssp             SSCTTHHH-HHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCCHHHHH
T ss_pred             CCchhHHH-HHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCCHHHHH
Confidence            99988885 889999999999999865  22222   345667889999886653 3455

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=2e-12  Score=103.09  Aligned_cols=111  Identities=15%  Similarity=0.160  Sum_probs=87.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc-c---CHHHHH----HhCCeeeeccCccc--c
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV-V---KLNEVI----RTVDIVVTATGNKN--V  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~-~---~l~e~~----~~aDvvi~~~~~~~--~  177 (258)
                      +|++|+|+|.|.+|...++.++.+|++|+++|+++.+++.+++.|++. .   +..+..    ...|+++.|.+...  .
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~  106 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID  106 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccch
Confidence            899999999999999999999999999999999999999999988752 1   111222    24699999865543  4


Q ss_pred             ccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeecc
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~  219 (258)
                      ++ ..++.++++++++.+|..  +.+.....+..+++++.++.-
T Consensus       107 ~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~  149 (168)
T d1piwa2         107 FN-IMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSAL  149 (168)
T ss_dssp             TT-TGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCC
T ss_pred             HH-HHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEee
Confidence            54 788899999999999987  444555666777888887754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=99.19  E-value=6.4e-11  Score=93.94  Aligned_cols=92  Identities=18%  Similarity=0.260  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC---Cc-----ccCHHHHHHhCCeeeecc-----C
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG---FS-----VVKLNEVIRTVDIVVTAT-----G  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g---~~-----~~~l~e~~~~aDvvi~~~-----~  173 (258)
                      .+..+|+|+|.|..|+..++.++.+|+.|.++|.++.+++......   .+     ...+++.++++|+||.+.     .
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            4678999999999999999999999999999999998876543321   11     124678889999999983     5


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ++.+|.++.++.||+|+++||++..
T Consensus       110 aP~lIt~~mv~~Mk~GSVIVDvaid  134 (168)
T d1pjca1         110 APILVPASLVEQMRTGSVIVDVAVD  134 (168)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             cCeeecHHHHhhcCCCcEEEEeecC
Confidence            6789999999999999999999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.15  E-value=8.5e-12  Score=99.62  Aligned_cols=113  Identities=15%  Similarity=0.135  Sum_probs=92.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|++|+|+|+|.+|...++.++.+|+ +|+++|+++.+++.+++.|.+..      +.++..+     ..|+++.+++..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            79999999999999999999999997 68889999999988888887521      1333333     379999999998


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCc
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                      ..++ +.++.++++++++.+|.+ +.+.+...+-.+++++.++..+.
T Consensus       112 ~~~~-~a~~~l~~~G~iv~~G~~~~~~~~~~~l~~k~~~i~Gs~~~~  157 (172)
T d1h2ba2         112 ATVD-YTPYLLGRMGRLIIVGYGGELRFPTIRVISSEVSFEGSLVGN  157 (172)
T ss_dssp             HHHH-HGGGGEEEEEEEEECCCSSCCCCCHHHHHHTTCEEEECCSCC
T ss_pred             hHHH-HHHHHHhCCCEEEEEeCcccccCCHHHHHhCCcEEEEEEecC
Confidence            8886 889999999999999987 55555666667889999885543

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.15  E-value=8.1e-12  Score=98.96  Aligned_cols=113  Identities=16%  Similarity=0.162  Sum_probs=90.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHHHH----hCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEVIR----TVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~----~aDvvi~~~~~~~~  177 (258)
                      +|++|+|+|+|+||...++.+|.+|++|+++|+++.+++.+++.|++..      +..+.+.    +.|.++.+++....
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~  106 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSA  106 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccchH
Confidence            7999999999999999999999999999999999999988999987521      2333222    35777778777777


Q ss_pred             ccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV  221 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~  221 (258)
                      ++ +.++.++++++++.+|..  +.+.+...+..+++++.++..+.
T Consensus       107 ~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~~~  151 (166)
T d1llua2         107 FG-QAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGT  151 (166)
T ss_dssp             HH-HHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             HH-HHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEeecC
Confidence            75 889999999999999976  44455566667889998876544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.15  E-value=1.8e-10  Score=92.54  Aligned_cols=92  Identities=23%  Similarity=0.313  Sum_probs=76.4

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------------------------------
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------------------------------  156 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------------------------------  156 (258)
                      ++..+|+|+|.|..|+..++.++.+|+.|.++|.++.+++.....+..+.                              
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            46789999999999999999999999999999999998877666653221                              


Q ss_pred             CHHHHHHhCCeeeecc-----CccccccHHHHhcCCCCcEEEecCCC
Q psy16115        157 KLNEVIRTVDIVVTAT-----GNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       157 ~l~e~~~~aDvvi~~~-----~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.+.++++|+||.+.     .++.+++++.++.||+|+++||++..
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaid  153 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVE  153 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeec
Confidence            1334467899999973     46679999999999999999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=4.1e-11  Score=95.16  Aligned_cols=112  Identities=14%  Similarity=0.162  Sum_probs=89.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHH---HHhCCeeeeccCccccccH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEV---IRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~---~~~aDvvi~~~~~~~~i~~  180 (258)
                      +|++|+|+|+|.||...++.+|.+|+++++++.++++.+.+++.|++..    +.+..   .+..|+++.+++....++ 
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~-  108 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLD-  108 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHH-
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHH-
Confidence            8999999999999999999999999999899999998888888887532    22222   235899999999888886 


Q ss_pred             HHHhcCCCCcEEEecCCC-C--hhhchhhhcCCCceeeeeccC
Q psy16115        181 EHMDKMKNGCVVCNMGHS-N--TEIDVNSLRTPDLTWEKVRSQ  220 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~-~--~~~~~~~l~~~~i~~~~~~~~  220 (258)
                      ..++.++++++++.+|.. +  .......+..+++++.++...
T Consensus       109 ~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~  151 (168)
T d1uufa2         109 DFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG  151 (168)
T ss_dssp             HHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSC
T ss_pred             HHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeec
Confidence            889999999999999976 2  333555666788888887543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.13  E-value=1.2e-11  Score=99.27  Aligned_cols=90  Identities=26%  Similarity=0.354  Sum_probs=77.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc-c-----CHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV-V-----KLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~-~-----~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+|+|.||...++.++.+|+ +|+++|+++.|++.+++.|++. .     ++.+.+.      +.|++|+|++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            79999999999999999999999998 6999999999998899888642 1     2333332      27999999999


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...++ +.++.++++++++.+|..
T Consensus       107 ~~~~~-~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2         107 SETLS-QAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             TTHHH-HHHHHEEEEEEEEECCCC
T ss_pred             HHHHH-HHHHHHhcCCEEEEEeec
Confidence            98886 889999999999999976

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.12  E-value=1.9e-10  Score=90.84  Aligned_cols=87  Identities=11%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--ccCHHHHHHhCCeeeeccC---ccccccHHHHhc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VVKLNEVIRTVDIVVTATG---NKNVVTREHMDK  185 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~~l~e~~~~aDvvi~~~~---~~~~i~~~~l~~  185 (258)
                      +|+|||+|.||..+|+.|+..|.+|++||+++++.+.+.+.+..  ..+..+.++++|+|++|+.   ...+++ +....
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~-~l~~~   80 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLE-KLIPH   80 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHH-HHGGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhh-hhhhh
Confidence            69999999999999999999999999999999888888888753  3345567889999999863   234554 66677


Q ss_pred             CCCCcEEEecCCC
Q psy16115        186 MKNGCVVCNMGHS  198 (258)
Q Consensus       186 ~k~g~~ivnvg~~  198 (258)
                      ++++.++++++..
T Consensus        81 l~~~~iv~~~~s~   93 (165)
T d2f1ka2          81 LSPTAIVTDVASV   93 (165)
T ss_dssp             SCTTCEEEECCSC
T ss_pred             cccccceeecccc
Confidence            8999999999876

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.08  E-value=7.8e-11  Score=94.14  Aligned_cols=110  Identities=21%  Similarity=0.180  Sum_probs=89.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhhHHHHHhCCCcc------cCHHHHHH-----hCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPICALQACMDGFSV------VKLNEVIR-----TVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~-----~aDvvi~~~~~~  175 (258)
                      +|++|+|+|+|.||..+++.++.+|++ |++.|+++.+++.+++.|+..      .++.+.++     +.|++++|+++.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~  107 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  107 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence            899999999999999999999999985 778899999998888888742      13444333     269999999999


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC----ChhhchhhhcCCCceeeeec
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS----NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~----~~~~~~~~l~~~~i~~~~~~  218 (258)
                      ..+. +.++.++++++++.+|.+    +.+.+...+..+++++.++.
T Consensus       108 ~~~~-~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~  153 (174)
T d1f8fa2         108 EILK-QGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVV  153 (174)
T ss_dssp             HHHH-HHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECS
T ss_pred             HHHH-HHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEE
Confidence            8886 889999999999999875    23445556667888888874

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.08  E-value=2.5e-10  Score=90.15  Aligned_cols=133  Identities=14%  Similarity=0.159  Sum_probs=92.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcccccc------HHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVT------REH  182 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~------~~~  182 (258)
                      ++||+||+|.||..+|+.|...|.+|.+||+++.+.+.....+.. ..++.+.+..+|+++.|......+.      ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            589999999999999999999999999999999988777777765 4578999999999999864333222      124


Q ss_pred             HhcCCCCcEEEecCCCChhh---chhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhH
Q psy16115        183 MDKMKNGCVVCNMGHSNTEI---DVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRL  247 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~~~~~---~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~  247 (258)
                      +..+++|.+++|.+..+.+.   ..+.+....+...+. +...    ....-.++....++.+++..|
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~da-pv~G----g~~~a~~G~l~~~~gG~~~~~  144 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDA-PVSG----GTAGAAAGTLTFMVGGDAEAL  144 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEES----CHHHHHHTCEEEEEESCHHHH
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEec-cccc----CccccccCCeEEEecCCHHHH
Confidence            56688999999999884332   334555555555443 1110    011122345555666555554

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-10  Score=92.86  Aligned_cols=136  Identities=19%  Similarity=0.211  Sum_probs=92.5

Q ss_pred             CCCCcchhhh---ccCcCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhC
Q psy16115         90 GPFKPSYYSL---KRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTV  165 (258)
Q Consensus        90 g~~~~~~~~~---~~~~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~a  165 (258)
                      +..+|...++   .+.++.++.||+|+|||.|. +|+.++.+|...|++|+.++.+..             ++.+.++++
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~-------------~l~~~~~~a   83 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA-------------HLDEEVNKG   83 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS-------------SHHHHHTTC
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccc-------------cHHHHHhhc
Confidence            3445555443   34567889999999999999 999999999999999999976432             456778899


Q ss_pred             CeeeeccCccccccHHHHhcCCCCcEEEecCCCCh---hhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEec
Q psy16115        166 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNT---EIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFR  241 (258)
Q Consensus       166 Dvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~---~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~  241 (258)
                      |+++.+.|.++++..+   ++|+|++++|+|....   +..-..---|.++..........+...++.+.+-|+-+|+.
T Consensus        84 Divi~a~G~~~~i~~~---~vk~g~iviDvgi~~~~~~~~~~~~~~~gdvd~~~v~~~a~~~TPvPGGVGp~Tva~L~~  159 (170)
T d1a4ia1          84 DILVVATGQPEMVKGE---WIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQ  159 (170)
T ss_dssp             SEEEECCCCTTCBCGG---GSCTTCEEEECCCBC----------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHH
T ss_pred             cchhhccccccccccc---cccCCCeEeccCcccccccccCCCCEEecccchHhhhhhceEeCCCCCchhHHHHHHHHH
Confidence            9999999999999855   5799999999997621   11111111122233333333333555556666555555554

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.05  E-value=5.4e-10  Score=89.39  Aligned_cols=90  Identities=21%  Similarity=0.216  Sum_probs=76.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-C-------HHHHH-----HhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-K-------LNEVI-----RTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-~-------l~e~~-----~~aDvvi~~~~  173 (258)
                      +|++|+|+|+|.||...++.++.+|+ +|++.|++++|++.+++.|++.. +       ..+..     .++|++++|+|
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            89999999999999999999999998 68899999999999999987521 1       22222     14799999999


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCC
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~  198 (258)
                      .+..++ +.++.++++ ++++.+|..
T Consensus       108 ~~~~~~-~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2         108 TAQTLK-AAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             CHHHHH-HHHHTBCTTTCEEEECCCS
T ss_pred             cchHHH-HHHHHhhcCCeEEEecCCC
Confidence            999886 899999996 899999987

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.05  E-value=3.5e-11  Score=95.07  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=91.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc------CHHHH----HHhCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV------KLNEV----IRTVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~----~~~aDvvi~~~~~~~~  177 (258)
                      +|++|+|.|+|+||..+++.++..|++|++++.+++++..+++.|++..      ++.+.    ..+.|.++++++....
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  106 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  106 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCCHHH
Confidence            7999999999999999999999999999999999999998999987532      23333    2345667777777777


Q ss_pred             ccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc-ceee
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV-DHVI  225 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~-~~~~  225 (258)
                      ++ ..++.++++++++.+|..  +.......+..+++++.++..+. ++|+
T Consensus       107 ~~-~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~  156 (168)
T d1rjwa2         107 FQ-SAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQ  156 (168)
T ss_dssp             HH-HHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHH
T ss_pred             HH-HHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEEeeCCHHHHH
Confidence            75 899999999999999987  33344445556778888876443 3455

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.03  E-value=1.1e-09  Score=86.28  Aligned_cols=103  Identities=21%  Similarity=0.312  Sum_probs=79.4

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHH-HHHhCCCcc---cCHHHHHHhCCeeeeccCccc-ccc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICAL-QACMDGFSV---VKLNEVIRTVDIVVTATGNKN-VVT  179 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~-~a~~~g~~~---~~l~e~~~~aDvvi~~~~~~~-~i~  179 (258)
                      ++.+++|+|||+|.||+.+++.|...|+ ++++++|+..+.+ .+.+.+...   .++.+.+.++|+||.|++.+. +++
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~~ii~  100 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIH  100 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCCcccc
Confidence            4689999999999999999999999998 6999999987754 344556543   456677889999999987664 777


Q ss_pred             HHHHhcC------CCCcEEEecCCC-Chhhchhhhc
Q psy16115        180 REHMDKM------KNGCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       180 ~~~l~~~------k~g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      ++.++..      ++..+++|.|.+ +.+..+..+.
T Consensus       101 ~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~  136 (159)
T d1gpja2         101 VDDVREALRKRDRRSPILIIDIANPRDVEEGVENIE  136 (159)
T ss_dssp             HHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGST
T ss_pred             HhhhHHHHHhcccCCCeEEEeecCCCCcChhhhccC
Confidence            7776532      244599999988 6665555544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.02  E-value=5.2e-11  Score=94.53  Aligned_cols=117  Identities=12%  Similarity=0.109  Sum_probs=92.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCcc------cCHHH-HHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSV------VKLNE-VIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~------~~l~e-~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|+ |.+|...++.++..|. +|++.++++.+.+.+++.|++.      .++.+ ..+     ..|++++|++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g  106 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNN  106 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccc
Confidence            7999999995 9999999999999996 7999999999998888888642      12333 332     3799999999


Q ss_pred             ccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceeeeeccCc-ceee
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWEKVRSQV-DHVI  225 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~~~~~-~~~~  225 (258)
                      ....++ ..++.++++++++.+|..  +.+.+...+..+++++.++..+. .+|.
T Consensus       107 ~~~~~~-~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~~~~d~~  160 (170)
T d1jvba2         107 SEKTLS-VYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFL  160 (170)
T ss_dssp             CHHHHT-TGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSCCHHHHH
T ss_pred             cchHHH-hhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEecCCHHHHH
Confidence            888887 789999999999999976  45555666666788888876543 3344

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.3e-09  Score=86.11  Aligned_cols=137  Identities=17%  Similarity=0.219  Sum_probs=94.3

Q ss_pred             ccCCCCCcchhhh---ccCcCcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHH
Q psy16115         87 NKAGPFKPSYYSL---KRSTDVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVI  162 (258)
Q Consensus        87 ~~~g~~~~~~~~~---~~~~~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~  162 (258)
                      .+.+..+|...++   .+.++.++.||+|+|||.+. +|+.++.+|...|++|++++...             .++.+.+
T Consensus        12 ~~~~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t-------------~~l~~~~   78 (166)
T d1b0aa1          12 RAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHHV   78 (166)
T ss_dssp             TCCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHHH
T ss_pred             CCCCCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc-------------chhHHHH
Confidence            3445555555553   33467789999999999999 99999999999999999986533             2567788


Q ss_pred             HhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecC
Q psy16115        163 RTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRK  242 (258)
Q Consensus       163 ~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~  242 (258)
                      +++|+++.+.|.++++..+   ++|+|+++||+|....+.  ..+ -|.++.........-+...+|.+.+-|+-.|+.+
T Consensus        79 ~~ADivI~a~G~p~~i~~~---~vk~g~vvIDvGi~~~~~--~~~-~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L~~N  152 (166)
T d1b0aa1          79 ENADLLIVAVGKPGFIPGD---WIKEGAIVIDVGINRLEN--GKV-VGDVVFEDAAKRASYITPVPGGVGPMTVATLIEN  152 (166)
T ss_dssp             HHCSEEEECSCCTTCBCTT---TSCTTCEEEECCCEECTT--SCE-ECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHH
T ss_pred             hhhhHhhhhccCccccccc---ccCCCcEEEecCceecCC--CCE-EeccccHhHHhheeEeCCCCCcccHHHHHHHHHH
Confidence            9999999999999999855   579999999999751110  000 0222222222223335556666666566655553

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=98.97  E-value=5.4e-10  Score=89.29  Aligned_cols=109  Identities=19%  Similarity=0.181  Sum_probs=83.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------C--HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------K--LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~--l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|+|.+|...++.++..|+ +|++.|++++|++.+++.|++..      +  .++..+     +.|+++++++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g  106 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  106 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC
Confidence            89999999999999999999999997 69999999999999999997632      1  233332     4799999999


Q ss_pred             ccccccHHHHhcCCC-CcEEEecCCC--Chhhchh--hhcCCCceeeeec
Q psy16115        174 NKNVVTREHMDKMKN-GCVVCNMGHS--NTEIDVN--SLRTPDLTWEKVR  218 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~-g~~ivnvg~~--~~~~~~~--~l~~~~i~~~~~~  218 (258)
                      ....+. +.+..+++ ++.++-+|.+  +.+..++  .+. +++++.++.
T Consensus       107 ~~~~~~-~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~  154 (174)
T d1p0fa2         107 RIETMM-NALQSTYCGSGVTVVLGLASPNERLPLDPLLLL-TGRSLKGSV  154 (174)
T ss_dssp             CHHHHH-HHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH-TTCEEEECS
T ss_pred             CchHHH-HHHHHHHHhcCceEEEEEecCccccccCHHHHh-CCCEEEEEE
Confidence            988886 66766655 5888888876  3333333  232 345676664

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.90  E-value=4.2e-09  Score=82.17  Aligned_cols=96  Identities=10%  Similarity=0.122  Sum_probs=77.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH-HhCCCcc-cCHHHHHHhCCeeeeccCccccccHHHHhcCCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA-CMDGFSV-VKLNEVIRTVDIVVTATGNKNVVTREHMDKMKN  188 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a-~~~g~~~-~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~  188 (258)
                      +++|||+|.||.++++.+...|.+++++++++++.... .+.|... .+.+++++.+|+|++|. .+..+. +.++.+++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilav-kp~~~~-~vl~~l~~   79 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGI-KPQLFE-TVLKPLHF   79 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECS-CGGGHH-HHHTTSCC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeec-chHhHH-HHhhhccc
Confidence            69999999999999999999999999999998876553 4456654 57899999999999997 355554 78888999


Q ss_pred             CcEEEecCCC-Chhhchhhhc
Q psy16115        189 GCVVCNMGHS-NTEIDVNSLR  208 (258)
Q Consensus       189 g~~ivnvg~~-~~~~~~~~l~  208 (258)
                      +..++++..+ ..+.+-+.+.
T Consensus        80 ~~~iis~~agi~~~~l~~~l~  100 (152)
T d2ahra2          80 KQPIISMAAGISLQRLATFVG  100 (152)
T ss_dssp             CSCEEECCTTCCHHHHHHHHC
T ss_pred             ceeEecccccccHHHHHhhhc
Confidence            9999999887 5444444443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=1e-09  Score=87.27  Aligned_cols=107  Identities=18%  Similarity=0.225  Sum_probs=81.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHH---HH---HhCCeeeeccCcccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNE---VI---RTVDIVVTATGNKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e---~~---~~aDvvi~~~~~~~~i~  179 (258)
                      +|++|+|.|. |.+|+..++.++.+|++|++.++++++.+.+++.|++.. +..+   ..   +++|+|+.++|  ..++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~~~~  104 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KEVE  104 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--TTHH
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--hhHH
Confidence            8999999995 999999999999999999999999988888889998632 2222   22   24799999887  3454


Q ss_pred             HHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        180 REHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                       +.++.++++++++.+|..   ..+.+...+..+++++.+.
T Consensus       105 -~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~  144 (171)
T d1iz0a2         105 -ESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGF  144 (171)
T ss_dssp             -HHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEEC
T ss_pred             -HHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEE
Confidence             889999999999999865   2344455555667777765

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.87  E-value=4.6e-09  Score=85.82  Aligned_cols=105  Identities=20%  Similarity=0.309  Sum_probs=82.5

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHH-hCCeeeeccCccccccHHHHh
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIR-TVDIVVTATGNKNVVTREHMD  184 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~-~aDvvi~~~~~~~~i~~~~l~  184 (258)
                      +|.|+||+|.|+|.+|..+|+.|...|++|+++|.++.+...+...+.+..+.++++. .+||++-|. ..+.|+.+..+
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-~~~~I~~~~a~  102 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-MGGVITTEVAR  102 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-CSCCBCHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-ccccccHHHHh
Confidence            4899999999999999999999999999999999999988888888888888888877 689999885 66789989999


Q ss_pred             cCCCCcEEEecCCCC--hhhchhhhcCCCc
Q psy16115        185 KMKNGCVVCNMGHSN--TEIDVNSLRTPDL  212 (258)
Q Consensus       185 ~~k~g~~ivnvg~~~--~~~~~~~l~~~~i  212 (258)
                      .++-. +++-.+.++  .+..-+.|.++.|
T Consensus       103 ~i~ak-~i~e~AN~p~~~~~~~~~L~~rgI  131 (201)
T d1c1da1         103 TLDCS-VVAGAANNVIADEAASDILHARGI  131 (201)
T ss_dssp             HCCCS-EECCSCTTCBCSHHHHHHHHHTTC
T ss_pred             hhhhh-eeeccCCCCcchhhHHHHhcccce
Confidence            88743 333333331  2222335555545

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.8e-09  Score=84.66  Aligned_cols=109  Identities=21%  Similarity=0.280  Sum_probs=86.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|.|+ |.||+...+.++.+|++|++.+.++++.+.+++.|++.      .++.+.++      ..|+++.|.+.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g~  107 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  107 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeecccH
Confidence            7999999995 99999999999999999999998888888888888752      23444432      37999999875


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeec
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~  218 (258)
                       ..++ +.++.++++++++.+|.. +.+.....+..+++++.+..
T Consensus       108 -~~~~-~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~k~~~i~g~~  150 (174)
T d1yb5a2         108 -VNLS-KDLSLLSHGGRVIVVGSRGTIEINPRDTMAKESSIIGVT  150 (174)
T ss_dssp             -HHHH-HHHHHEEEEEEEEECCCCSCEEECTHHHHTTTCEEEECC
T ss_pred             -HHHH-HHHhccCCCCEEEEEecCCCCCCCHHHHHHCCCEEEEEE
Confidence             3554 788999999999999876 44445555666778887763

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.86  E-value=6.5e-09  Score=82.99  Aligned_cols=90  Identities=19%  Similarity=0.228  Sum_probs=73.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-C-------HHHHH-----HhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-K-------LNEVI-----RTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-~-------l~e~~-----~~aDvvi~~~~  173 (258)
                      +|++|+|+|+|.+|...++.++.+|+ +|+++|+++++++.|++.|++.. +       .++..     .+.|+++++++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g  108 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIG  108 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCC
Confidence            79999999999999999999999996 79999999999999999988631 1       22222     14899999998


Q ss_pred             ccccccHHHHhcCC-CCcEEEecCCC
Q psy16115        174 NKNVVTREHMDKMK-NGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~i~~~~l~~~k-~g~~ivnvg~~  198 (258)
                      ....+. +.+..+. .+++++.+|..
T Consensus       109 ~~~~~~-~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2         109 HLETMI-DALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             CHHHHH-HHHTTSCTTTCEEEECSCC
T ss_pred             chHHHH-HHHHHhhcCCeEEEEEEcc
Confidence            887775 5666664 45899999987

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.84  E-value=7e-09  Score=81.75  Aligned_cols=88  Identities=20%  Similarity=0.286  Sum_probs=69.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCcc---cCHHHH-HHhCCeeeeccCcc---ccccH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFSV---VKLNEV-IRTVDIVVTATGNK---NVVTR  180 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~~---~~l~e~-~~~aDvvi~~~~~~---~~i~~  180 (258)
                      ++|+|||+|.||.++|+.|+..|.  +|++||++++..+.+.+.+...   .+.++. ...+|+|++|+...   .+++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~-   80 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK-   80 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh-
Confidence            579999999999999999999985  7999999999888888887632   233332 34689999996432   3443 


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      +....++++.++++++..
T Consensus        81 ~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             hhhccccccccccccccc
Confidence            556678999999999987

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=98.81  E-value=2.4e-09  Score=85.43  Aligned_cols=106  Identities=9%  Similarity=0.132  Sum_probs=76.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc------cc---CHHHHHHhCCeeeeccCcc----c
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS------VV---KLNEVIRTVDIVVTATGNK----N  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~------~~---~l~e~~~~aDvvi~~~~~~----~  176 (258)
                      ++|||||+|.||..+|+.|...|.+|++||+++++.+...+.+..      ..   ++.+.+..+|+++.+....    .
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            679999999999999999999999999999999987766555432      12   3444455689998874332    2


Q ss_pred             cccHHHHhcCCCCcEEEecCCCChhh---chhhhcCCCceeee
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHSNTEI---DVNSLRTPDLTWEK  216 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~~~~~---~~~~l~~~~i~~~~  216 (258)
                      ++ ...+..+++|.++||++..+.+.   ..+.+....+.+.+
T Consensus        83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ld  124 (176)
T d2pgda2          83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVG  124 (176)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceec
Confidence            33 35677889999999999873322   23455555555443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.78  E-value=9.9e-09  Score=81.33  Aligned_cols=88  Identities=13%  Similarity=0.150  Sum_probs=68.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc----------------ccCHHHHHHhCCeeeecc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS----------------VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~----------------~~~l~e~~~~aDvvi~~~  172 (258)
                      .||++|||+|.+|..+|..|...|.+|++||+++++.+.....+..                ..++.+.++++|++++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            4899999999999999999999999999999999887655443210                235789999999999996


Q ss_pred             Ccc---ccccHHHHhcCCCCcEEEecCC
Q psy16115        173 GNK---NVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       173 ~~~---~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      .+.   .++. +.-..++++.+++....
T Consensus        81 ~~~~~~~~~~-~i~~~l~~~~~iv~~~g  107 (184)
T d1bg6a2          81 PAIHHASIAA-NIASYISEGQLIILNPG  107 (184)
T ss_dssp             CGGGHHHHHH-HHGGGCCTTCEEEESSC
T ss_pred             chhHHHHHHH-HhhhccCCCCEEEEeCC
Confidence            444   3332 45557888988876543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.75  E-value=1e-08  Score=83.27  Aligned_cols=90  Identities=28%  Similarity=0.390  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc------CHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV------KLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~------~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|+|+|+||...++.++.+|+ +|+++|.++.|++.+++.|++..      ++.+.+.      ++|+++.+.|.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG~  104 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  104 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECccc
Confidence            89999999999999999999999998 79999999999999999987632      2322221      37999998763


Q ss_pred             ---------------cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 ---------------KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ---------------~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                                     ...++ +.++.++++++++.+|.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~l~-~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2         105 EARGHGHEGAKHEAPATVLN-SLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             TCBCSSTTGGGSBCTTHHHH-HHHHHEEEEEEEEECSCC
T ss_pred             cccCCcccceeecCcHHHHH-HHHHHHhcCCEEEEeeec
Confidence                           23554 788889999999999986

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.73  E-value=3.9e-08  Score=76.11  Aligned_cols=81  Identities=15%  Similarity=0.320  Sum_probs=64.9

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcc---ccccHHHH
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNK---NVVTREHM  183 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~---~~i~~~~l  183 (258)
                      .-++|+||| +|.||+.+|+.|+..|.+|.++|+++...            .++.+..+|+++.++...   ..+ .+..
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~v~-~~~~   74 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV------------AESILANADVVIVSVPINLTLETI-ERLK   74 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG------------HHHHHTTCSEEEECSCGGGHHHHH-HHHG
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc------------cchhhhhccccccccchhhheeee-eccc
Confidence            458999999 99999999999999999999999976542            345677899999985333   233 3667


Q ss_pred             hcCCCCcEEEecCCCChh
Q psy16115        184 DKMKNGCVVCNMGHSNTE  201 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~~~~  201 (258)
                      ..++++++++|++....+
T Consensus        75 ~~~~~~~iiiD~~Svk~~   92 (152)
T d2pv7a2          75 PYLTENMLLADLTSVKRE   92 (152)
T ss_dssp             GGCCTTSEEEECCSCCHH
T ss_pred             ccccCCceEEEecccCHH
Confidence            788999999999977433

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.70  E-value=1.6e-08  Score=78.48  Aligned_cols=87  Identities=11%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCccccccHHHHh-cCCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNKNVVTREHMD-KMKN  188 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~-~~k~  188 (258)
                      +|+|||+|.||+.+|+.|+..|.+|+++|+++.+.......+.. ..+.+++++++|+|++|........ ...+ .-..
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~-~~~~~~~~~   80 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALG-AARRAGRHV   80 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHH-HHHHHHTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHH-HHHhhcccC
Confidence            69999999999999999999999999998877665443333332 3468899999999999975444332 1111 1234


Q ss_pred             CcEEEecCCC
Q psy16115        189 GCVVCNMGHS  198 (258)
Q Consensus       189 g~~ivnvg~~  198 (258)
                      +..+++++..
T Consensus        81 ~~~~id~st~   90 (152)
T d1i36a2          81 RGIYVDINNI   90 (152)
T ss_dssp             CSEEEECSCC
T ss_pred             CceeeccCcC
Confidence            6789998876

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.65  E-value=3.7e-08  Score=77.76  Aligned_cols=88  Identities=23%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc--------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV--------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~--------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|+|.+|...++.++.+|+ +|++.|+++++.+.++++|++..        +..+.++     .+|+++++++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G  107 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence            89999999999999999999999997 68889999999988999887521        1233332     4799999999


Q ss_pred             ccccccHHHHhcCCCCcEEEecC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg  196 (258)
                      ....+. ..+..+++|..++.++
T Consensus       108 ~~~~~~-~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         108 NVKVMR-AALEACHKGWGVSVVV  129 (176)
T ss_dssp             CHHHHH-HHHHTBCTTTCEEEEC
T ss_pred             CHHHHH-HHHHhhcCCceeEEEE
Confidence            888875 7888888886665543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=98.65  E-value=8.4e-08  Score=75.87  Aligned_cols=109  Identities=19%  Similarity=0.243  Sum_probs=80.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc--------CHHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV--------KLNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~--------~l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|+|.+|...++.++.+|+ +|++.|+++.+.+.+++.|++..        ...+..+     +.|+++++++
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G  107 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  107 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCC
Confidence            89999999999999999999999996 79999999999999999887521        1233322     4799999999


Q ss_pred             ccccccHHHHhcCCCC-cEEEecCCC-Chh-h-chhhhcCCCceeeee
Q psy16115        174 NKNVVTREHMDKMKNG-CVVCNMGHS-NTE-I-DVNSLRTPDLTWEKV  217 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g-~~ivnvg~~-~~~-~-~~~~l~~~~i~~~~~  217 (258)
                      ....+. +.+..++++ .+++..+.. +.. . ....+..+++++.++
T Consensus       108 ~~~~~~-~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs  154 (176)
T d2jhfa2         108 RLDTMV-TALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGA  154 (176)
T ss_dssp             CHHHHH-HHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEEC
T ss_pred             chhHHH-HHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEE
Confidence            998885 777888775 555555554 221 2 112233356677665

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.63  E-value=2e-08  Score=74.28  Aligned_cols=90  Identities=14%  Similarity=0.243  Sum_probs=67.2

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH--hCCCccc---CHHHHHHhCCeeeeccCccccccH
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC--MDGFSVV---KLNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~--~~g~~~~---~l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      +++|++|+|+|.|.+|..-++.|..+|++|++++..........  ..+++..   --++.+.++++|+.+++.+ .++.
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~-~~n~   87 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD-TVNQ   87 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH-HHHH
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCH-HHHH
Confidence            57999999999999999999999999999999987765543322  2222211   1233466789998887544 5566


Q ss_pred             HHHhcCCCCcEEEecC
Q psy16115        181 EHMDKMKNGCVVCNMG  196 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg  196 (258)
                      +..+.+|+.+++||+.
T Consensus        88 ~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          88 RVSDAAESRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHcCCEEEeC
Confidence            7778888889999986

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.1e-07  Score=76.69  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=81.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----------CCCc-------------------ccCHH
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----------DGFS-------------------VVKLN  159 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----------~g~~-------------------~~~l~  159 (258)
                      ++|+|||+|.||..+|..+...|.+|+++|++++.+..+.+           .+..                   ..++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            79999999999999999999999999999999876543322           1210                   12456


Q ss_pred             HHHHhCCeeeeccCccccccH----HHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCC
Q psy16115        160 EVIRTVDIVVTATGNKNVVTR----EHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNN  234 (258)
Q Consensus       160 e~~~~aDvvi~~~~~~~~i~~----~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~  234 (258)
                      +.++++|+|++|..-.--+..    +.-+.+++++++..-..+ ....+...+...+ +..+.+     |..|...   -
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~-r~ig~H-----ffnP~~~---~  155 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQD-RFAGLH-----FFNPVPV---M  155 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGG-GEEEEE-----ECSSTTT---C
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHh-HEEeec-----cccccCc---c
Confidence            677889999999532222222    333456888888644444 6555555554332 333443     3322221   1


Q ss_pred             ceeEEecCCChh
Q psy16115        235 TVIDLFRKPKSR  246 (258)
Q Consensus       235 ~~~~l~~~~~~~  246 (258)
                      +.+.++.+++.+
T Consensus       156 ~lVEIv~g~~T~  167 (192)
T d1f0ya2         156 KLVEVIKTPMTS  167 (192)
T ss_dssp             CEEEEECCTTCC
T ss_pred             cEEEEcCCCCCC
Confidence            577788877654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=98.61  E-value=1.4e-07  Score=74.43  Aligned_cols=109  Identities=18%  Similarity=0.255  Sum_probs=79.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCCCccc-C-------HHHHHH-----hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDGFSVV-K-------LNEVIR-----TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g~~~~-~-------l~e~~~-----~aDvvi~~~~  173 (258)
                      +|++|+|+|.|.+|...++.++..|+ +|++.|++++|++.++++|++.. +       .++..+     +.|+++++++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G  107 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  107 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecC
Confidence            89999999999999999999999987 69999999999999999997521 1       122222     4899999999


Q ss_pred             ccccccHHHHhcCCC-CcEEEecCCC--ChhhchhhhcCCCceeeee
Q psy16115        174 NKNVVTREHMDKMKN-GCVVCNMGHS--NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~-g~~ivnvg~~--~~~~~~~~l~~~~i~~~~~  217 (258)
                      ....+. ..+...++ +.+++-.|..  ........+..+++++.++
T Consensus       108 ~~~~~~-~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs  153 (175)
T d1cdoa2         108 NVGVMR-NALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGS  153 (175)
T ss_dssp             CHHHHH-HHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEEC
T ss_pred             CHHHHH-HHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEE
Confidence            888775 66666555 4666667765  2222223333345667665

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=2.3e-08  Score=78.02  Aligned_cols=134  Identities=13%  Similarity=0.081  Sum_probs=84.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCcccc---ccHHHHhcC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNV---VTREHMDKM  186 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~---i~~~~l~~~  186 (258)
                      .+||+||+|.||..+|+.|...|..+ ++++++.+.....+.+....+..+.+.++|+++.+......   .....+..+
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~   79 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL   79 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence            36999999999999999999888766 56666665544333333333444556678999887432221   123567788


Q ss_pred             CCCcEEEecCCCChh---hchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEecCCChhHHH
Q psy16115        187 KNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLFRKPKSRLYL  249 (258)
Q Consensus       187 k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  249 (258)
                      +++.+++|.+..+.+   ...+.+.+..+.+.+. +....    ...-.+++...++.+++..|.+
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~lda-pVsGg----~~~A~~G~L~~~vgG~~~~~~~  140 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVTYLDA-PVSGG----TSGAEAGTLTVMLGGPEEAVER  140 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEEC-CEESH----HHHHHHTCEEEEEESCHHHHHH
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCeEEec-cccCc----hhhhccCCEEEEEeCCHHHHHH
Confidence            999999999988332   2345666666665544 22111    0112345667777777666654

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.58  E-value=4e-08  Score=78.99  Aligned_cols=128  Identities=19%  Similarity=0.255  Sum_probs=80.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-----------CC-cc------------cCHHHHHHhC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-----------GF-SV------------VKLNEVIRTV  165 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-----------g~-~~------------~~l~e~~~~a  165 (258)
                      ++|+|||+|.||+.+|..+...|.+|+++|++++.++.+.+.           +. ..            .+..+.+.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            689999999999999999999999999999998765543221           10 00            1111225679


Q ss_pred             CeeeeccCcccc----ccHHHHhcCCCCcEEEecCCC-ChhhchhhhcCCCceeeeeccCcceeecCCCccCCCceeEEe
Q psy16115        166 DIVVTATGNKNV----VTREHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDLTWEKVRSQVDHVIWPDVNLKNNTVIDLF  240 (258)
Q Consensus       166 Dvvi~~~~~~~~----i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~l~  240 (258)
                      |+|++|....--    +-++.-+.+++++++...+.+ ....+.+.+...+ +..+.+.+.     |...+   +.+.++
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~-r~~g~Hf~n-----P~~~~---~lVEiv  155 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPE-NFVGMHFFN-----PVHMM---PLVEVI  155 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGG-GEEEEECCS-----STTTC---CEEEEE
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCch-heEeecccc-----CcccC---CeEEEC
Confidence            999998532222    222444567889888665555 6666666665432 333443322     22222   467777


Q ss_pred             cCCChh
Q psy16115        241 RKPKSR  246 (258)
Q Consensus       241 ~~~~~~  246 (258)
                      .+++.+
T Consensus       156 ~~~~T~  161 (186)
T d1wdka3         156 RGEKSS  161 (186)
T ss_dssp             ECSSCC
T ss_pred             CCCCCC
Confidence            776653

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.57  E-value=3.6e-08  Score=77.92  Aligned_cols=91  Identities=22%  Similarity=0.338  Sum_probs=74.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh-hHHHHHhCCCcccCHHHHHHhCCeeeecc---CccccccHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI-CALQACMDGFSVVKLNEVIRTVDIVVTAT---GNKNVVTREH  182 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~-~~~~a~~~g~~~~~l~e~~~~aDvvi~~~---~~~~~i~~~~  182 (258)
                      +++|+|+|||+|.-|++-|+.||..|.+|++--+... ...+|.+.|+++.+++|+++.+|+|+...   ....+..++.
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD~~q~~vy~~~I   93 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEEI   93 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHHT
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecchHHHHHHHHHhh
Confidence            5899999999999999999999999999877555443 45678889999999999999999999974   2334565567


Q ss_pred             HhcCCCCcEEEecCCC
Q psy16115        183 MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       183 l~~~k~g~~ivnvg~~  198 (258)
                      ...||+|..+.. +.|
T Consensus        94 ~p~lk~g~~L~F-aHG  108 (182)
T d1np3a2          94 EPNLKKGATLAF-AHG  108 (182)
T ss_dssp             GGGCCTTCEEEE-SCC
T ss_pred             hhhcCCCcEEEE-ecc
Confidence            778999998875 344

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=1.9e-07  Score=73.98  Aligned_cols=91  Identities=21%  Similarity=0.309  Sum_probs=68.7

Q ss_pred             CcccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-------------ccCHHHHHHhCCeee
Q psy16115        104 DVMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-------------VVKLNEVIRTVDIVV  169 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-------------~~~l~e~~~~aDvvi  169 (258)
                      +.++.||+++|||.+. +|+++|.+|...|++|+.++.+...... ......             ...+.+....+|+++
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-RGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-SCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-cccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            4578999999999998 7999999999999999998765322100 000000             012566777899999


Q ss_pred             eccCcccc-ccHHHHhcCCCCcEEEecCCC
Q psy16115        170 TATGNKNV-VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       170 ~~~~~~~~-i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.|.++. +..+   +.|+|++++|+|..
T Consensus       103 savG~p~~~i~~d---~ik~GavvIDvGi~  129 (171)
T d1edza1         103 TGVPSENYKFPTE---YIKEGAVCINFACT  129 (171)
T ss_dssp             ECCCCTTCCBCTT---TSCTTEEEEECSSS
T ss_pred             EccCCCccccChh---hcccCceEeecccc
Confidence            99999886 7644   57999999999987

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.55  E-value=8e-08  Score=74.47  Aligned_cols=95  Identities=16%  Similarity=0.172  Sum_probs=68.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC-CEEEEEeCChhhHHHH-HhCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCC-
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG-CVIYITEIDPICALQA-CMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK-  187 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a-~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k-  187 (258)
                      ++++||+|.||.++++.|...| .+|.++|+++++.+.. .+.++...+-.+.+.++|+||+|.. +..+. +.++.++ 
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~~-~v~~~l~~   79 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDME-AACKNIRT   79 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHHH-HHHTTCCC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHHH-HhHHHHhh
Confidence            6999999999999999887666 6899999999887654 3467765544444678999999974 33443 5555554 


Q ss_pred             CCcEEEecCCC-Chhhchhhh
Q psy16115        188 NGCVVCNMGHS-NTEIDVNSL  207 (258)
Q Consensus       188 ~g~~ivnvg~~-~~~~~~~~l  207 (258)
                      .+..++.+..+ +.+.+-+.+
T Consensus        80 ~~~~viS~~ag~~~~~l~~~l  100 (152)
T d1yqga2          80 NGALVLSVAAGLSVGTLSRYL  100 (152)
T ss_dssp             TTCEEEECCTTCCHHHHHHHT
T ss_pred             cccEEeecccCCCHHHHHHHh
Confidence            46788887777 444444444

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=1.4e-08  Score=78.57  Aligned_cols=85  Identities=13%  Similarity=0.067  Sum_probs=61.2

Q ss_pred             EEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCC-CC
Q psy16115        112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK-NG  189 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k-~g  189 (258)
                      +++||+|.||+.+++.|+..+..+.+++|++++.+...+ .+....+..++++++|+|++|.. +..+. +.++.++ ++
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~-d~~i~-~v~~~l~~~~   79 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVP-DRYIK-TVANHLNLGD   79 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSC-TTTHH-HHHTTTCCSS
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEecc-chhhh-HHHhhhcccc
Confidence            689999999999999997744445689999998765444 44556678888999999999974 34453 6677774 78


Q ss_pred             cEEEecCCC
Q psy16115        190 CVVCNMGHS  198 (258)
Q Consensus       190 ~~ivnvg~~  198 (258)
                      .++++++.+
T Consensus        80 ~ivi~~s~~   88 (153)
T d2i76a2          80 AVLVHCSGF   88 (153)
T ss_dssp             CCEEECCSS
T ss_pred             eeeeecccc
Confidence            899999877

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=1.2e-07  Score=75.15  Aligned_cols=89  Identities=20%  Similarity=0.283  Sum_probs=72.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|.|. |.+|+..++.++.+|++|++...++++.+.+++.|++.      .++.+.+.      +.|+++.+.+.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~  104 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  104 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence            7899999995 99999999999999999999888888888888888753      13434332      37999999875


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                       ..++ +.++.++++++++.+|..
T Consensus       105 -~~~~-~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_         105 -EAIQ-RGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             -HHHH-HHHHTEEEEEEEEECSCG
T ss_pred             -hHHH-HHHHHhcCCCEEEEEccC
Confidence             3554 789999999999999865

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=1.4e-07  Score=67.17  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=50.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHH-HHhCCCcc--c-CHHHHHHhCCeeeeccCcc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQ-ACMDGFSV--V-KLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~-a~~~g~~~--~-~l~e~~~~aDvvi~~~~~~  175 (258)
                      +++||+|+|+|+|..|+++|+.|...|++|+++|.++..... ....+...  . .-++.+.+.|+++..+|-+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIA   75 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTSC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCCC
Confidence            468999999999999999999999999999999986543211 11122221  1 1255677899999987654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.43  E-value=3e-07  Score=72.73  Aligned_cols=107  Identities=9%  Similarity=0.112  Sum_probs=73.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc---------cCHHHHHH---hCCeeeeccCccccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV---------VKLNEVIR---TVDIVVTATGNKNVV  178 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~---------~~l~e~~~---~aDvvi~~~~~~~~i  178 (258)
                      +|||||+|.||..+|+.|...|.+|++||+++++.+...+.+...         .+.++.+.   .++.++.+......+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT   82 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchh
Confidence            699999999999999999999999999999999876655544321         23344433   456666664333322


Q ss_pred             c---HHHHhcCCCCcEEEecCCCChh---hchhhhcCCCceeeee
Q psy16115        179 T---REHMDKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEKV  217 (258)
Q Consensus       179 ~---~~~l~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~~  217 (258)
                      .   ......++++.+++|.+..+.+   ...+.+....+.....
T Consensus        83 ~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~lda  127 (178)
T d1pgja2          83 DSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGM  127 (178)
T ss_dssp             HHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEE
T ss_pred             hhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecc
Confidence            1   2566778999999999988333   2344555665655443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.37  E-value=3.9e-07  Score=75.49  Aligned_cols=90  Identities=22%  Similarity=0.344  Sum_probs=71.6

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHH-hCCCcccCHHHHHH-hCCeeeeccCccccccHHH
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQAC-MDGFSVVKLNEVIR-TVDIVVTATGNKNVVTREH  182 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~-~~g~~~~~l~e~~~-~aDvvi~~~~~~~~i~~~~  182 (258)
                      .++.|+||+|-|+|.+|..+|+.|...|++|++.|.++....... ..|....+.++.+. .|||++-|. ..+.|+.+.
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA-~~~~I~~~~  113 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-LGAVLNDFT  113 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-CSCCBSTTH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccc-cccccChHH
Confidence            458999999999999999999999999999999999987765433 35666667777765 699999997 577888888


Q ss_pred             HhcCCCCcEEEecC
Q psy16115        183 MDKMKNGCVVCNMG  196 (258)
Q Consensus       183 l~~~k~g~~ivnvg  196 (258)
                      ...++-. +|+-.+
T Consensus       114 ~~~l~ak-~Ive~A  126 (230)
T d1leha1         114 IPQLKAK-VIAGSA  126 (230)
T ss_dssp             HHHCCCS-EECCSC
T ss_pred             hhccCcc-EEEecc
Confidence            8888743 444333

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.33  E-value=4.4e-07  Score=72.06  Aligned_cols=108  Identities=21%  Similarity=0.220  Sum_probs=82.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cC-HHHHHH-----hCCeeeeccCc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VK-LNEVIR-----TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~-l~e~~~-----~aDvvi~~~~~  174 (258)
                      +|++|+|.|. |.+|+..++.++..|++|++..+++++.+.+++.|++.      .+ .++..+     +.|+|+.+.+.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG~  108 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  108 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecCc
Confidence            7999999998 55999999999999999999999998888888888752      12 233332     47999999874


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC---------ChhhchhhhcCCCceeeee
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS---------NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~---------~~~~~~~~l~~~~i~~~~~  217 (258)
                       ..++ +.++.+++++.++.+|..         ........+..+++++.+.
T Consensus       109 -~~~~-~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~  158 (182)
T d1v3va2         109 -EFLN-TVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGF  158 (182)
T ss_dssp             -HHHH-HHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEEC
T ss_pred             -hhhh-hhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEE
Confidence             4554 889999999999999863         1122334555666777664

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.28  E-value=1.1e-06  Score=71.45  Aligned_cols=88  Identities=24%  Similarity=0.300  Sum_probs=68.7

Q ss_pred             cCC-CEEEEEcCchHHHHHHHHHHh------CCCEEEE-EeCChhhHHHHHhCCCc-----ccCHHHHHHhCCeeeecc-
Q psy16115        107 FGG-KQVVLCGYGEVGKGCCQSLKG------LGCVIYI-TEIDPICALQACMDGFS-----VVKLNEVIRTVDIVVTAT-  172 (258)
Q Consensus       107 l~g-~~V~IiG~G~IG~~~a~~l~~------~G~~Vi~-~d~~~~~~~~a~~~g~~-----~~~l~e~~~~aDvvi~~~-  172 (258)
                      ++| |+|+|||+|.-|++-|..||.      .|.+|++ .........+|.+.|+.     ..+.+|+++.+|+|+..+ 
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlP  120 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS  120 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSC
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecc
Confidence            478 999999999999999999999      4566655 44444556678888986     457899999999999974 


Q ss_pred             --CccccccHHHHhcCCCCcEEEec
Q psy16115        173 --GNKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       173 --~~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                        ....+.+ +....||+|..+...
T Consensus       121 De~Q~~vy~-~I~p~Lk~G~~L~Fa  144 (226)
T d1qmga2         121 DSAQADNYE-KVFSHMKPNSILGLS  144 (226)
T ss_dssp             HHHHHHHHH-HHHHHSCTTCEEEES
T ss_pred             hHHHHHHHH-HHHHhcCCCceeeec
Confidence              2334554 677889999998763

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.24  E-value=5.6e-07  Score=71.56  Aligned_cols=108  Identities=18%  Similarity=0.188  Sum_probs=83.4

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-----CHHHHHH-----hCCeeeeccCccc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-----KLNEVIR-----TVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-----~l~e~~~-----~aDvvi~~~~~~~  176 (258)
                      +|++|+|.| .|-+|....+.++..|++|+....++.+.+.+++.|++..     ..++..+     +.|+|+.+.+.. 
T Consensus        31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~-  109 (176)
T d1xa0a2          31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR-  109 (176)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT-
T ss_pred             CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCch-
Confidence            689999999 5789999999999999999999999999888888887632     1222222     469999998644 


Q ss_pred             cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      .++ +.++.++++++++.+|..   +.+.++..+..+.+++.++
T Consensus       110 ~~~-~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2         110 TLA-TVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             THH-HHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             hHH-HHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence            453 889999999999999975   4455566666677888875

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.24  E-value=1e-06  Score=68.54  Aligned_cols=90  Identities=16%  Similarity=0.094  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-CCc---------ccCHHHHHHhCCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-GFS---------VVKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-g~~---------~~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      ++|+|+|+|+|.||+.+|+.|...|.+|+++||+..+.....+. +..         ....++.+...|+++.++.....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            36999999999999999999999999999999999987654332 211         11345556778888877533322


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .. ......+.+..+++.+..
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~  100 (182)
T d1e5qa1          81 AT-VIKSAIRQKKHVVTTSYV  100 (182)
T ss_dssp             HH-HHHHHHHHTCEEECSSCC
T ss_pred             hH-HHHHHHhhccceeecccC
Confidence            21 223344667788887765

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.23  E-value=1e-06  Score=66.21  Aligned_cols=65  Identities=23%  Similarity=0.333  Sum_probs=52.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc--------CHHHH-HHhCCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV--------KLNEV-IRTVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~--------~l~e~-~~~aDvvi~~~~~  174 (258)
                      |++.|+|+|.+|+.+++.|...|.+|+++|.++++.+.+...+....        .++++ +.++|.++.+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCc
Confidence            57899999999999999999999999999999999887766665321        23333 5679988887643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=8.1e-07  Score=69.98  Aligned_cols=89  Identities=22%  Similarity=0.238  Sum_probs=71.3

Q ss_pred             CCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc------cCHHHHHH------hCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV------VKLNEVIR------TVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~------~~l~e~~~------~aDvvi~~~~~  174 (258)
                      +|++|+|.|.|. +|+.+++.++..|++|++.++++++.+.+++.|++.      .++.+.++      ..|+++.+.+.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g~  107 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGR  107 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCG
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCccH
Confidence            799999996555 999999999999999999999999988888888752      23444332      25999998864


Q ss_pred             cccccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      . .+. +.+..+++++.++..+..
T Consensus       108 ~-~~~-~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         108 D-TWE-RSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             G-GHH-HHHHTEEEEEEEEECCCT
T ss_pred             H-HHH-HHHHHHhcCCeeeecccc
Confidence            4 453 788999999999888765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.18  E-value=5.2e-06  Score=66.26  Aligned_cols=92  Identities=17%  Similarity=0.149  Sum_probs=65.3

Q ss_pred             CcccCCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC-----CC-----cc---cCHHHHHHhCCeee
Q psy16115        104 DVMFGGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMD-----GF-----SV---VKLNEVIRTVDIVV  169 (258)
Q Consensus       104 ~~~l~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~-----g~-----~~---~~l~e~~~~aDvvi  169 (258)
                      +.+|+||+++|.|. |-||+.+++.+...|++|++++|++++.....+.     ..     +.   .++++.+.+.|++|
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili   97 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF   97 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence            56789999999995 6699999999999999999999998876543221     11     11   13455567889999


Q ss_pred             eccCc-cccccHHHHhcCCCCcEEEec
Q psy16115        170 TATGN-KNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       170 ~~~~~-~~~i~~~~l~~~k~g~~ivnv  195 (258)
                      .+++. ...++.+.++.+..--++.++
T Consensus        98 n~Ag~g~~~~~~e~~~~~~~~nv~~~~  124 (191)
T d1luaa1          98 TAGAIGLELLPQAAWQNESSIEIVADY  124 (191)
T ss_dssp             ECCCTTCCCBCHHHHHTCTTCCEEEEC
T ss_pred             ecCccccccCCHHHHHhhhcceeehhH
Confidence            88653 345666777666554444443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.16  E-value=2.9e-06  Score=68.47  Aligned_cols=88  Identities=13%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC---------------------cccCHHHHHHhCCeee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF---------------------SVVKLNEVIRTVDIVV  169 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~---------------------~~~~l~e~~~~aDvvi  169 (258)
                      +|+|||+|.+|..+|..+...|.+|+++|.++.+.........                     ...++.+.++.+|+++
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i~   81 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSF   81 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEEE
Confidence            6999999999999999999999999999999876543221110                     1235678888999999


Q ss_pred             eccCccc-------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        170 TATGNKN-------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       170 ~~~~~~~-------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      +|.+|+.             .++  .+.++..+++..++.-+.-
T Consensus        82 i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv  125 (202)
T d1mv8a2          82 ICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTV  125 (202)
T ss_dssp             ECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCC
T ss_pred             EecCccccccccccchhhhhhhhhhhheeecccCCcceeecccc
Confidence            9976642             111  0223445678888877664

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.1e-05  Score=63.86  Aligned_cols=106  Identities=15%  Similarity=0.108  Sum_probs=71.5

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHh----C----CC--c---c---cCHHHHHHhCC
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACM----D----GF--S---V---VKLNEVIRTVD  166 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~----~----g~--~---~---~~l~e~~~~aD  166 (258)
                      +.+++|++|+|+|+|-.|++++..+...|+ ++++++|++++...+..    .    ..  .   .   ..+.+.+..+|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            456899999999999999999999999998 69999999876543221    1    11  1   1   12445567899


Q ss_pred             eeeeccC--ccccccH---HHHhcCCCCcEEEecCCC-ChhhchhhhcC
Q psy16115        167 IVVTATG--NKNVVTR---EHMDKMKNGCVVCNMGHS-NTEIDVNSLRT  209 (258)
Q Consensus       167 vvi~~~~--~~~~i~~---~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~  209 (258)
                      +||.|+.  ....-+.   ..+..++++.+++|+--. .+..++...++
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~ll~~a~~  141 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQ  141 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHHT
T ss_pred             eeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHHHHHHHH
Confidence            9999963  2211110   124568999999999765 33444444443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=1.3e-06  Score=67.56  Aligned_cols=88  Identities=10%  Similarity=0.054  Sum_probs=62.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--------ccCHHHHHHhCCeeeeccCcccccc--H
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--------VVKLNEVIRTVDIVVTATGNKNVVT--R  180 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--------~~~l~e~~~~aDvvi~~~~~~~~i~--~  180 (258)
                      +|+|+|+|.||..++..|...|.+|.++++++.+.......+..        ..+..+....+|++++++.....-+  +
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~~   81 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVK   81 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHHHH
Confidence            79999999999999999999999999999987653221111111        1245667788999999975544321  1


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      .....++++..++.+..+
T Consensus        82 ~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          82 SLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             HHHTTSCTTSCEEEECSS
T ss_pred             hhccccCcccEEeeccCc
Confidence            333456778888877655

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=1.3e-06  Score=68.67  Aligned_cols=109  Identities=18%  Similarity=0.150  Sum_probs=85.4

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHHHH---------HhCCeeeeccCccc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNEVI---------RTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e~~---------~~aDvvi~~~~~~~  176 (258)
                      .|++|+|-| .|.+|...++.+|.+|++|+...+++++.+.+++.|++.. +.++..         +..|+++.+.+-. 
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg~-  101 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK-  101 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTH-
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcHH-
Confidence            577899999 5889999999999999999999999888888888887643 333221         1368999887644 


Q ss_pred             cccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeeec
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~~  218 (258)
                      .+. +.++.++++++++.+|..   +.+.++..+..+.+++.+..
T Consensus       102 ~~~-~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~  145 (167)
T d1tt7a2         102 QLA-SLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGID  145 (167)
T ss_dssp             HHH-HHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECC
T ss_pred             HHH-HHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEe
Confidence            443 789999999999999876   45556667777888888853

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=4.5e-06  Score=65.52  Aligned_cols=114  Identities=16%  Similarity=0.191  Sum_probs=74.8

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-C----CCcccCHHHH-HHhCCeeeecc--Ccc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-D----GFSVVKLNEV-IRTVDIVVTAT--GNK  175 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~----g~~~~~l~e~-~~~aDvvi~~~--~~~  175 (258)
                      +.++.||+|+|+|+|-.+++++..|...|++|.+++|++++.+...+ .    .....++++. ...+|+||.|+  |..
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~   92 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS   92 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc
Confidence            45579999999999999999999999999999999999988654322 1    1122233332 34689999986  222


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC-Chhhchh-hhcCCC-ceeeee
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS-NTEIDVN-SLRTPD-LTWEKV  217 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~-~l~~~~-i~~~~~  217 (258)
                      +-....-++.++++.+++|+--. .+..++. +-..|. ..+.|.
T Consensus        93 ~~~~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~i~Gl  137 (170)
T d1nyta1          93 GDIPAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGL  137 (170)
T ss_dssp             TCCCCCCGGGCCTTCEEEESCCCSSCCHHHHHHHHTTCCEEECTH
T ss_pred             cCCCCCcHHHhccCcEEEEeecCCCCCHHHHHHHHcCCCcccCCH
Confidence            21111224568899999998766 2334444 444443 234443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.02  E-value=4.4e-06  Score=66.53  Aligned_cols=108  Identities=19%  Similarity=0.130  Sum_probs=74.7

Q ss_pred             CCCEEEEE--cCchHHHHHHHHHHhCCCEEEEEeCChhh----HHHHHhCCCccc-C--------H----HHHHH----h
Q psy16115        108 GGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPIC----ALQACMDGFSVV-K--------L----NEVIR----T  164 (258)
Q Consensus       108 ~g~~V~Ii--G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~----~~~a~~~g~~~~-~--------l----~e~~~----~  164 (258)
                      +|++|+|+  |.|.+|+...+.+|.+|++|+++-+++..    ....++.|++.. +        +    .+...    .
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            78999998  67889999999999999998876554433    223456676432 1        1    11111    3


Q ss_pred             CCeeeeccCccccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        165 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       165 aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                      .|+++.+.+.+. + .+.++.|+++++++.+|..   +.+.....+..+.+++.+.
T Consensus       108 vdvv~D~vg~~~-~-~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~G~  161 (189)
T d1gu7a2         108 AKLALNCVGGKS-S-TGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGF  161 (189)
T ss_dssp             EEEEEESSCHHH-H-HHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEEC
T ss_pred             ceEEEECCCcch-h-hhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEEEE
Confidence            799999987443 3 4788999999999999854   3444555555566776664

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=4.7e-06  Score=66.32  Aligned_cols=88  Identities=20%  Similarity=0.273  Sum_probs=65.7

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCE-EEEEeCChhhHH-HHHhCCCcc------cCHHHHHHh-----CCeeeeccC
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCV-IYITEIDPICAL-QACMDGFSV------VKLNEVIRT-----VDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~~~-~a~~~g~~~------~~l~e~~~~-----aDvvi~~~~  173 (258)
                      .+++|+|.| .|.+|+.+++.+|.+|++ |++++.++++.. .+.+.|++.      .++.+.++.     +|+++.+.+
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            348999999 599999999999999995 666666665544 345677653      245555553     899999997


Q ss_pred             ccccccHHHHhcCCCCcEEEecCC
Q psy16115        174 NKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      .. .+. ..++.++++++++.+|.
T Consensus       110 g~-~~~-~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         110 GD-ISN-TVISQMNENSHIILCGQ  131 (187)
T ss_dssp             HH-HHH-HHHTTEEEEEEEEEC--
T ss_pred             ch-hHH-HHhhhccccccEEEecc
Confidence            53 454 78999999999999986

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.91  E-value=2.3e-05  Score=58.53  Aligned_cols=83  Identities=22%  Similarity=0.314  Sum_probs=56.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CCCcc-----cCHH---HH-HHhCCeeeeccCcc--ccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DGFSV-----VKLN---EV-IRTVDIVVTATGNK--NVV  178 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g~~~-----~~l~---e~-~~~aDvvi~~~~~~--~~i  178 (258)
                      +|.|+|+|.+|+.+++.|...|.+|+++|.++++...+.+ .+...     .+.+   ++ ++++|.++.++...  .++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~N~~   81 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNLM   81 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHHHHH
Confidence            7999999999999999999999999999999988765543 35432     1222   21 34688888876543  223


Q ss_pred             cHHHHhcCCCCcEEE
Q psy16115        179 TREHMDKMKNGCVVC  193 (258)
Q Consensus       179 ~~~~l~~~k~g~~iv  193 (258)
                      -....+.+.+..+++
T Consensus        82 ~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          82 SSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHTTCCCEEE
T ss_pred             HHHHHHHcCCceEEE
Confidence            223444555555554

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.90  E-value=9.4e-06  Score=64.92  Aligned_cols=89  Identities=10%  Similarity=0.081  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--------CCc-------ccCHHHHHHhCCeeeecc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--------GFS-------VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--------g~~-------~~~l~e~~~~aDvvi~~~  172 (258)
                      .-++|+|+|+|..|.++|..|...|.+|++|+++++......+.        ++.       ..+++++++++|+|+.+.
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiav   85 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   85 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECS
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcC
Confidence            34689999999999999999999999999999988765432221        111       236899999999999996


Q ss_pred             CccccccHHHHhc---------CCCCcEEEecCCC
Q psy16115        173 GNKNVVTREHMDK---------MKNGCVVCNMGHS  198 (258)
Q Consensus       173 ~~~~~i~~~~l~~---------~k~g~~ivnvg~~  198 (258)
                      .+..+-  +.++.         .+++..++.++-|
T Consensus        86 Ps~~~~--~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          86 PTQFLR--GFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             CHHHHH--HHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             cHHHHH--HHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            444221  23322         2456678888777

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.84  E-value=2.5e-05  Score=60.38  Aligned_cols=91  Identities=14%  Similarity=0.103  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHh-------CCCc-----ccCHHHHHHhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACM-------DGFS-----VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~-------~g~~-----~~~l~e~~~~aDvvi~~~~  173 (258)
                      +.+||+|||+|.+|..+|..+...|. +++++|.++.+... +..       .+..     ..+.++.++++|+|+.+.+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            56899999999999999988887775 79999998865432 111       1111     1246778899999999854


Q ss_pred             cccc-------------cc------HH---HHhcCCCCcEEEecCCC
Q psy16115        174 NKNV-------------VT------RE---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~~-------------i~------~~---~l~~~k~g~~ivnvg~~  198 (258)
                      ....             +.      .+   .+....+.+++++++.+
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            3211             10      01   13334688999998765

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.82  E-value=4e-05  Score=66.61  Aligned_cols=102  Identities=24%  Similarity=0.433  Sum_probs=74.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHH-hCCC-EEEEEeCChhhHHHHHh-----CCCc---ccCHHHHHHhCCeeeeccCcc--
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLK-GLGC-VIYITEIDPICALQACM-----DGFS---VVKLNEVIRTVDIVVTATGNK--  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~-~~G~-~Vi~~d~~~~~~~~a~~-----~g~~---~~~l~e~~~~aDvvi~~~~~~--  175 (258)
                      ..++++|||+|..++..++.+. .++. +|.+|++++.+.++..+     .|..   ..++++++++||+|++||.++  
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s~  206 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAY  206 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSE
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCCC
Confidence            3589999999999998888774 4676 69999999877543221     2443   347999999999999987443  


Q ss_pred             -ccccHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCc
Q psy16115        176 -NVVTREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDL  212 (258)
Q Consensus       176 -~~i~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i  212 (258)
                       .+++.   +++|+|..|..+|..   ..|.+.+.+...++
T Consensus       207 ~Pv~~~---~~l~pG~hI~aiGs~~p~~~Eld~~~l~~a~v  244 (340)
T d1x7da_         207 ATIITP---DMLEPGMHLNAVGGDCPGKTELHADVLRNARV  244 (340)
T ss_dssp             EEEECG---GGCCTTCEEEECSCCBTTBEEECHHHHHTSEE
T ss_pred             Ccccch---hhcCCCCEEeecccchhhhhccCHHHHhcCcE
Confidence             46663   468999999999986   34444455555444

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.79  E-value=3.8e-05  Score=66.21  Aligned_cols=100  Identities=21%  Similarity=0.264  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCC-EEEEEeCChhhHHHHH----hCCCc-ccCHHHHHHhCCeeeeccC-cccccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGC-VIYITEIDPICALQAC----MDGFS-VVKLNEVIRTVDIVVTATG-NKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~-~Vi~~d~~~~~~~~a~----~~g~~-~~~l~e~~~~aDvvi~~~~-~~~~i~  179 (258)
                      .-++++|||.|..++..++.+.. +.. +|.+|++++++.+...    ..+.. ..+.++.+.+||+|++||. +..+++
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~~~  203 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPVVK  203 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCCBC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcccccc
Confidence            34899999999999999988875 555 6999999988754322    23333 3467788899999999974 445665


Q ss_pred             HHHHhcCCCCcEEEecCCC---ChhhchhhhcCC
Q psy16115        180 REHMDKMKNGCVVCNMGHS---NTEIDVNSLRTP  210 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~  210 (258)
                      .   +++++|+.+..+|..   ..|.+.+.+...
T Consensus       204 ~---~~l~~G~hv~~iGs~~p~~~Eld~~~~~~a  234 (320)
T d1omoa_         204 A---EWVEEGTHINAIGADGPGKQELDVEILKKA  234 (320)
T ss_dssp             G---GGCCTTCEEEECSCCSTTCCCBCHHHHHTE
T ss_pred             h---hhcCCCCeEeecCCccccccccCHHHhhcC
Confidence            3   468999999999986   234444444443

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=6.1e-05  Score=62.08  Aligned_cols=106  Identities=18%  Similarity=0.234  Sum_probs=69.5

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHH-HhCCCEEEEEe-C----------ChhhHHHHHh-C-------CCcccCHHHHHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSL-KGLGCVIYITE-I----------DPICALQACM-D-------GFSVVKLNEVIR  163 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l-~~~G~~Vi~~d-~----------~~~~~~~a~~-~-------g~~~~~l~e~~~  163 (258)
                      +.++.|++|.|-|+|.+|+.+|+.| +..|++|+.++ .          +...+...++ .       +.+..+.++.+.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            4568999999999999999999999 56899977653 2          2222222111 1       223346677776


Q ss_pred             -hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCc
Q psy16115        164 -TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDL  212 (258)
Q Consensus       164 -~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i  212 (258)
                       .+||++-|. ..+.|+.+..+.++.. +|+-.+-+  ..++. +.|..+.|
T Consensus       106 ~~~DI~~PcA-~~~~I~~~~a~~l~~~-~I~e~AN~p~t~~a~-~~L~~rgI  154 (234)
T d1b26a1         106 LDVDILVPAA-LEGAIHAGNAERIKAK-AVVEGANGPTTPEAD-EILSRRGI  154 (234)
T ss_dssp             SCCSEEEECS-CTTCBCHHHHTTCCCS-EEECCSSSCBCHHHH-HHHHHTTC
T ss_pred             cccceeecch-hcccccHHHHHHhhhc-eEeecCCCCCCHHHH-HHHHHCCe
Confidence             799999995 6678998999988864 44433333  23332 34554544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=5.6e-06  Score=65.62  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=77.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc-CHHH-----HHH--hCCeeeeccCccccc
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV-KLNE-----VIR--TVDIVVTATGNKNVV  178 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~-~l~e-----~~~--~aDvvi~~~~~~~~i  178 (258)
                      .+++|+|.|. |.+|....+.+|.+|++|+++.+++++.+.+++.|++.+ +.++     .+.  ..|.++.+.+.. .+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~-~~  109 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDK-VL  109 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCHH-HH
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcchH-HH
Confidence            4568888775 789999999999999999999999998887888887632 2111     111  248888887544 34


Q ss_pred             cHHHHhcCCCCcEEEecCCC---ChhhchhhhcCCCceeeee
Q psy16115        179 TREHMDKMKNGCVVCNMGHS---NTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       179 ~~~~l~~~k~g~~ivnvg~~---~~~~~~~~l~~~~i~~~~~  217 (258)
                       .+.++.++++++++.+|..   +.+.++..+..+++++.+.
T Consensus       110 -~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~  150 (177)
T d1o89a2         110 -AKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGV  150 (177)
T ss_dssp             -HHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEEC
T ss_pred             -HHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEE
Confidence             3789999999999999875   3333444444455666664

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.75  E-value=5e-05  Score=60.38  Aligned_cols=63  Identities=22%  Similarity=0.311  Sum_probs=46.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--------------------ccCHHHHHHhCCeeee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--------------------VVKLNEVIRTVDIVVT  170 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--------------------~~~l~e~~~~aDvvi~  170 (258)
                      +|+|||+|.+|..+|..+ +.|.+|+++|.++.+..... .|..                    ..+......++|++++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~-~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKIN-NGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHH-TTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHh-hcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            699999999999999877 46999999999998764332 2221                    1134445678999999


Q ss_pred             ccCcc
Q psy16115        171 ATGNK  175 (258)
Q Consensus       171 ~~~~~  175 (258)
                      |+.++
T Consensus        80 ~vpt~   84 (196)
T d1dlja2          80 ATPTN   84 (196)
T ss_dssp             CCCCC
T ss_pred             cCCcc
Confidence            86443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=2.9e-05  Score=59.53  Aligned_cols=91  Identities=22%  Similarity=0.211  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC-------C--Cc-ccCHHHHHHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD-------G--FS-VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~-------g--~~-~~~l~e~~~~aDvvi~~~~~  174 (258)
                      .+++|+|||+|.||..+|..+...|.  ++..+|+++.+.+. +.+.       .  .. .....+.+++||+|+.+.+.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~   84 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence            67899999999999999999988774  69999999876431 1111       1  11 11234667889999997432


Q ss_pred             cc--------cccH---------HHHhcCCCCcEEEecCCC
Q psy16115        175 KN--------VVTR---------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~--------~i~~---------~~l~~~k~g~~ivnvg~~  198 (258)
                      +.        .+..         +.+....|.+++++++.+
T Consensus        85 ~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNP  125 (148)
T d1ldna1          85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP  125 (148)
T ss_dssp             CCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence            21        1110         123344678999998765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.72  E-value=3.9e-05  Score=58.99  Aligned_cols=90  Identities=13%  Similarity=0.114  Sum_probs=60.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHhC-------CCc----ccCHHHHHHhCCeeeeccCcc
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMD-------GFS----VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~~-------g~~----~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      ..+|+|||+|.+|..+|..+...+. ++..+|+++.+... +...       +..    ..+..+.++++|+|+.+.+.+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            5699999999999999998888776 79999998866432 1111       111    123456678999999985422


Q ss_pred             cc-------------c--cH----HH---HhcCCCCcEEEecCCC
Q psy16115        176 NV-------------V--TR----EH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~~-------------i--~~----~~---l~~~k~g~~ivnvg~~  198 (258)
                      ..             +  +.    +.   +....|++++++++.+
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11             1  11    11   3334589999998866

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.72  E-value=4.3e-05  Score=58.04  Aligned_cols=88  Identities=13%  Similarity=0.121  Sum_probs=59.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHHH-Hh--C-------CC--cccCHHHHHHhCCeeeeccCccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQA-CM--D-------GF--SVVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a-~~--~-------g~--~~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      +|+|||+|.+|..++..+...|.  ++..+|+++.+.+.. ..  .       ..  ...+..+.++++|+++.+.|.+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~~   81 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLPR   81 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecCC
Confidence            79999999999999999998884  799999998764321 11  1       11  11244566889999999854321


Q ss_pred             c---------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 V---------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~---------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      .               +.  .+.+....|++++++++.+
T Consensus        82 ~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1guza1          82 KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (142)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence            1               10  0123334588999998765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.70  E-value=2.4e-05  Score=61.55  Aligned_cols=107  Identities=16%  Similarity=0.126  Sum_probs=70.5

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-C----C------CcccCHHHHHHhCCeeeeccC
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-D----G------FSVVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~----g------~~~~~l~e~~~~aDvvi~~~~  173 (258)
                      .+++||+|+|+|.|-.+++++..|...| +|.+++|++++.+.... .    .      ....+++.....+|+++.|+.
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            4579999999999999999999998777 99999999887653211 0    1      112234444567899999863


Q ss_pred             cc--ccccH---HHHhcCCCCcEEEecCCC-ChhhchhhhcCCCc
Q psy16115        174 NK--NVVTR---EHMDKMKNGCVVCNMGHS-NTEIDVNSLRTPDL  212 (258)
Q Consensus       174 ~~--~~i~~---~~l~~~k~g~~ivnvg~~-~~~~~~~~l~~~~i  212 (258)
                      ..  ...+.   -.+..++++.++.|+.-. .+..++...++...
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~~~a~~~G~  137 (177)
T d1nvta1          93 IGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNA  137 (177)
T ss_dssp             TTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHHHHHHTTTC
T ss_pred             ccccccccccchhhhhccCcccceeeecCCcHhHHHHHHHHHCCC
Confidence            21  11110   124456788999998876 44555555544333

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.69  E-value=4.7e-05  Score=60.00  Aligned_cols=86  Identities=13%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh--HHHHHhCC------C--------cccCHHHHHHhCCeeeeccCc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC--ALQACMDG------F--------SVVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~--~~~a~~~g------~--------~~~~l~e~~~~aDvvi~~~~~  174 (258)
                      +|+|||+|.+|..+|..|...|.+|.+|.|+.+.  ........      .        ...++++.++++|+|+.++.+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avps   81 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST   81 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccch
Confidence            7999999999999999999999999999874332  22211111      0        024678889999999999644


Q ss_pred             cc---cccHHHHhcCCCCcEEEecCCC
Q psy16115        175 KN---VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~---~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ..   ++. +....+++. .++.+..+
T Consensus        82 ~~~~~~~~-~l~~~l~~~-~ii~~tkg  106 (180)
T d1txga2          82 DGVLPVMS-RILPYLKDQ-YIVLISKG  106 (180)
T ss_dssp             GGHHHHHH-HHTTTCCSC-EEEECCCS
T ss_pred             hhhHHHHH-hhccccccc-eecccccC
Confidence            43   332 334455655 44445555

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.67  E-value=5.7e-05  Score=62.57  Aligned_cols=106  Identities=22%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEe-CC----------hhhHHH-------------HHhCCCccc-CHH
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE-ID----------PICALQ-------------ACMDGFSVV-KLN  159 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d-~~----------~~~~~~-------------a~~~g~~~~-~l~  159 (258)
                      .++.|+||.|-|+|.+|..+|+.|...|++|+.++ .+          .+.+..             ....+.... +.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            35899999999999999999999999999987654 21          111111             111222222 334


Q ss_pred             HHHH-hCCeeeeccCccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCce
Q psy16115        160 EVIR-TVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLT  213 (258)
Q Consensus       160 e~~~-~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~  213 (258)
                      +++. .+||++-|. ..+.|+.+..+.++.. +|+-.+.+  ..+++ +.|..+.|.
T Consensus       107 ~i~~~~~DIliPcA-~~~~I~~~~a~~i~ak-~IvegAN~p~t~~a~-~~L~~rgI~  160 (242)
T d1v9la1         107 AIFKLDVDIFVPAA-IENVIRGDNAGLVKAR-LVVEGANGPTTPEAE-RILYERGVV  160 (242)
T ss_dssp             GGGGCCCSEEEECS-CSSCBCTTTTTTCCCS-EEECCSSSCBCHHHH-HHHHTTTCE
T ss_pred             hhccccccEEeecc-hhccccHHHHHhcccC-EEEecCCCCCChhHH-HHHHhCCeE
Confidence            4444 699999997 5567887888877653 44433333  33332 556666553

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.66  E-value=7.2e-05  Score=63.50  Aligned_cols=105  Identities=17%  Similarity=0.300  Sum_probs=66.7

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEe-----------CChhhHHHHHhCCC-------cccCHHHHHH-hC
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITE-----------IDPICALQACMDGF-------SVVKLNEVIR-TV  165 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d-----------~~~~~~~~a~~~g~-------~~~~l~e~~~-~a  165 (258)
                      .++.|+||+|-|+|.+|..+|+.|...|++|+.++           .+...+.......-       ...+.++++. .|
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDC  111 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCc
Confidence            35799999999999999999999999999977653           23333333222111       1122334443 69


Q ss_pred             CeeeeccCccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCc
Q psy16115        166 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDL  212 (258)
Q Consensus       166 Dvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i  212 (258)
                      ||++-|+ ..+.|+.+..+.++.. +|+-.+.+  ..+++ +.|..+.+
T Consensus       112 DIliPaA-~~~~I~~~~a~~l~ak-~I~EgAN~P~t~eA~-~~L~~~gI  157 (293)
T d1hwxa1         112 DILIPAA-SEKQLTKSNAPRVKAK-IIAEGANGPTTPQAD-KIFLERNI  157 (293)
T ss_dssp             SEEEECS-SSSCBCTTTGGGCCCS-EEECCSSSCBCHHHH-HHHHHTTC
T ss_pred             cEEeecc-ccccccHHHHHHHhhC-EEeccCCCCCCcchH-HHHHHCCC
Confidence            9999996 6677887878877654 44444444  22332 34544444

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.66  E-value=4.4e-05  Score=58.05  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=57.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHH-HHhC-------C----CcccCHHHHHHhCCeeeeccCccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQ-ACMD-------G----FSVVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~-a~~~-------g----~~~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      ++|+|||+|.+|..+|..+...+. +++.+|+++.+... +...       +    +...+-.+.++++|+|+.+.+.+.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~   81 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR   81 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC
Confidence            689999999999999988887775 89999998876432 2111       1    111122344688999999864321


Q ss_pred             --------ccc------HH---HHhcCCCCcEEEecCCC
Q psy16115        177 --------VVT------RE---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 --------~i~------~~---~l~~~k~g~~ivnvg~~  198 (258)
                              .+.      ++   .+....|.++++.++.+
T Consensus        82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNP  120 (142)
T d1uxja1          82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP  120 (142)
T ss_dssp             --------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSS
T ss_pred             CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCc
Confidence                    111      11   23344678899998766

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=1.3e-05  Score=61.36  Aligned_cols=36  Identities=31%  Similarity=0.454  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      .+.||+|+|||.|.+|..-++.|..+|++|+++++.
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            479999999999999999999999999999998654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.65  E-value=8.2e-05  Score=58.40  Aligned_cols=88  Identities=27%  Similarity=0.278  Sum_probs=60.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC-CE-EEEEeCChhhH-HHHHhCCCcc-------------------cCHHHHHHhCCe
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG-CV-IYITEIDPICA-LQACMDGFSV-------------------VKLNEVIRTVDI  167 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G-~~-Vi~~d~~~~~~-~~a~~~g~~~-------------------~~l~e~~~~aDv  167 (258)
                      .+|+|.|+|+||+.+++.+.... .+ |.+.|+++... ..+.+.++..                   .++.++..++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            48999999999999999997654 56 44567765432 2233433221                   135566678999


Q ss_pred             eeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      |++|||...... +.-..++.|+..|-+|..
T Consensus        83 ViEcTG~f~~~~-~~~~hl~~G~k~Vi~s~~  112 (172)
T d2czca2          83 IVDATPGGIGAK-NKPLYEKAGVKAIFQGGE  112 (172)
T ss_dssp             EEECCSTTHHHH-HHHHHHHHTCEEEECTTS
T ss_pred             EEECCCCCCCHH-HHHHHHHcCCCEEEECCC
Confidence            999998765543 334456778888888765

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.65  E-value=0.0001  Score=58.17  Aligned_cols=87  Identities=21%  Similarity=0.202  Sum_probs=55.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC-CEEEE-EeCChhhHHH-HHhCCC-----------------c-ccCHHHHHHhCCeee
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG-CVIYI-TEIDPICALQ-ACMDGF-----------------S-VVKLNEVIRTVDIVV  169 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G-~~Vi~-~d~~~~~~~~-a~~~g~-----------------~-~~~l~e~~~~aDvvi  169 (258)
                      +|+|.|+|+||+.+++.+.... .+++. .|+.+..... ....+.                 . ...+.+...++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            7999999999999999998764 57555 5665543222 222211                 1 114667778899999


Q ss_pred             eccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        170 TATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       170 ~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      +||+...... ..-..++.|..+|-.|..
T Consensus        83 ecTG~f~~~e-~a~~hl~~G~KvIi~~~~  110 (178)
T d1b7go1          83 DTTPNGVGAQ-YKPIYLQLQRNAIFQGGE  110 (178)
T ss_dssp             ECCSTTHHHH-HHHHHHHTTCEEEECTTS
T ss_pred             ECCCCcCCHH-HHHHHHHcCCEEEEECCC
Confidence            9998643332 233345666677766654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=4.9e-05  Score=60.60  Aligned_cols=67  Identities=15%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcc--------cCHHHHHHhCCeeeeccCc
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSV--------VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~--------~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..|+|+|+| .|.||+.+++.|...|.+|+++.|++.+.......+++.        .++.+.++++|+|+.+.+.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 699999999999999999999999988753322233331        2356778899999988643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=6.8e-05  Score=56.82  Aligned_cols=88  Identities=19%  Similarity=0.259  Sum_probs=58.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHhC--C--C----c-ccCHHHHHHhCCeeeeccCccc--
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACMD--G--F----S-VVKLNEVIRTVDIVVTATGNKN--  176 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~~--g--~----~-~~~l~e~~~~aDvvi~~~~~~~--  176 (258)
                      +|+|||+|.+|..+|..+...|.  ++..+|+++.+... +...  .  +    . .....+.+++||+|+.+.+.+.  
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~~   81 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQKP   81 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccCC
Confidence            79999999999999988877664  79999999876542 1111  0  0    0 1223455889999999853321  


Q ss_pred             -c------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 -V------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 -~------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                       .            +.  .+.+....|++++++++.+
T Consensus        82 g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          82 GETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence             1            11  0223445788999998865

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.56  E-value=5.8e-05  Score=64.34  Aligned_cols=73  Identities=42%  Similarity=0.803  Sum_probs=64.1

Q ss_pred             CCcchh------hHHHHHHHHHhC-CCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcch
Q psy16115         24 SNPLII------PQALALIELFNA-PAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSY   96 (258)
Q Consensus        24 ~~~~~~------~~~l~~~~l~~~-~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   96 (258)
                      +||.++      +|+|++.+++.. .++++..+|+.+|.++|++||.+.+..+++.++.+++.+.+|+..+..||+.+-.
T Consensus       231 ~~P~~vMd~SFanQ~La~~~l~~~~~~~~~~~~Vy~lP~~lDe~vA~l~L~~~g~~id~Lt~~Q~~Yl~~~~~gp~k~~~  310 (313)
T d1v8ba2         231 DHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNE  310 (313)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHTTTSSSCCSSEECCCHHHHHHHHHHHHGGGTCCCCCCCHHHHHHHTCCTTSCCSCTT
T ss_pred             CCcHHHHHHHHHhHHHHHHHHHhcCcccccCCcEEECChHHHHHHHHHHHHhcCCEeccCCHHHHHHCCCCCCCCCCCCC
Confidence            478774      899999999865 2246889999999999999999999999999999999999999999999987643

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.56  E-value=1.5e-05  Score=62.56  Aligned_cols=105  Identities=15%  Similarity=0.134  Sum_probs=65.7

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-CC----CcccCHHH-HHHhCCeeeeccC--cc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-DG----FSVVKLNE-VIRTVDIVVTATG--NK  175 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-~g----~~~~~l~e-~~~~aDvvi~~~~--~~  175 (258)
                      +.+++|++|+|+|+|-.+++++..|...+.+|++++|+.++.+...+ .+    ......++ .+..+|++|.|+.  ..
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~   92 (171)
T d1p77a1          13 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS   92 (171)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccc
Confidence            34579999999999999999999998877789999999987654322 11    11122222 2457899999963  22


Q ss_pred             ccccHHHHhcCCCCcEEEecCCC-C-hhhchhhhc
Q psy16115        176 NVVTREHMDKMKNGCVVCNMGHS-N-TEIDVNSLR  208 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivnvg~~-~-~~~~~~~l~  208 (258)
                      +-........++++..++|+--. + +..++..-+
T Consensus        93 ~~~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~  127 (171)
T d1p77a1          93 GGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCK  127 (171)
T ss_dssp             ----CCCHHHHHHCSCEEESCCCTTSCCHHHHHHH
T ss_pred             ccccchhhhhhcccceeeeeeccCcccHHHHHHHH
Confidence            21111123345677888888764 2 334444333

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.54  E-value=4e-05  Score=58.65  Aligned_cols=90  Identities=16%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh-------CCCc--c-cCHHHHHHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM-------DGFS--V-VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~-------~g~~--~-~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..++|+|||+|.+|..+|..|...|.  +++++|+++.+... +.+       .+..  . .+. +.+++||+|+.+.+.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEeccc
Confidence            46799999999999999999988773  79999999866431 211       1111  1 133 346889999998543


Q ss_pred             ccc---------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        175 KNV---------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~~~---------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      +..               +.  .+.+....+.+++++++.+
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNP  123 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANP  123 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCc
Confidence            321               11  0123445678888888765

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.54  E-value=0.00019  Score=59.13  Aligned_cols=104  Identities=19%  Similarity=0.330  Sum_probs=66.7

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHH-hCCCEEEEE-eCC----------hhhHHHHHh--------CCCcccCHHHHHH-h
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLK-GLGCVIYIT-EID----------PICALQACM--------DGFSVVKLNEVIR-T  164 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~-~~G~~Vi~~-d~~----------~~~~~~a~~--------~g~~~~~l~e~~~-~  164 (258)
                      .+.|+||+|-|+|.+|..+|+.|. ..|++|+.+ |.+          ...+...+.        .+.+..+.++++. .
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            379999999999999999999885 579996654 432          122211111        1234456677765 6


Q ss_pred             CCeeeeccCccccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCc
Q psy16115        165 VDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDL  212 (258)
Q Consensus       165 aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i  212 (258)
                      +||++-|+ ..+.|+.+..+.++-. +|+-.+-+  ..++ .+.|..+.|
T Consensus       109 ~DIl~PcA-~~~~I~~~~a~~i~ak-~I~e~AN~p~t~ea-~~~L~~rgI  155 (239)
T d1gtma1         109 VDVLAPAA-IEEVITKKNADNIKAK-IVAEVANGPVTPEA-DEILFEKGI  155 (239)
T ss_dssp             CSEEEECS-CSCCBCTTGGGGCCCS-EEECCSSSCBCHHH-HHHHHHTTC
T ss_pred             ccEEeecc-ccccccHHHHHhcccc-EEEecCCCCCCHHH-HHHHHHCCC
Confidence            99999997 5678887888877654 44443333  2233 244555545

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.52  E-value=5.6e-05  Score=57.78  Aligned_cols=89  Identities=13%  Similarity=0.196  Sum_probs=58.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh-------CCCc---ccCHHHHHHhCCeeeeccCccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM-------DGFS---VVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~-------~g~~---~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      |+|+|||+|.+|..+|..+...|.  ++..+|+++.+... +.+       ....   ...-.+.+++||+|+.+.|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999998887774  79999999876432 111       1111   1122345789999999865321


Q ss_pred             ------------ccc--H----H---HHhcCCCCcEEEecCCC
Q psy16115        177 ------------VVT--R----E---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ------------~i~--~----~---~l~~~k~g~~ivnvg~~  198 (258)
                                  ++.  .    +   .+....|++++++++-+
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence                        111  0    1   23444678888888765

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.50  E-value=7.1e-05  Score=62.46  Aligned_cols=109  Identities=21%  Similarity=0.266  Sum_probs=66.2

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCCEEEE-EeCC----------hhhHHHHH----------------hCCCccc
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYI-TEID----------PICALQAC----------------MDGFSVV  156 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~-~d~~----------~~~~~~a~----------------~~g~~~~  156 (258)
                      +.++.|+||.|-|+|.+|+.+|+.|...|++|+. .|.+          ...+....                ..+.+..
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  110 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence            4568999999999999999999999999999765 3422          22111110                0111222


Q ss_pred             CHHHHHH-hCCeeeeccCccccccHHHHhcCC-CCcEE-EecCCCC--hhhchhhhcCCCce
Q psy16115        157 KLNEVIR-TVDIVVTATGNKNVVTREHMDKMK-NGCVV-CNMGHSN--TEIDVNSLRTPDLT  213 (258)
Q Consensus       157 ~l~e~~~-~aDvvi~~~~~~~~i~~~~l~~~k-~g~~i-vnvg~~~--~~~~~~~l~~~~i~  213 (258)
                      +.++.+. .|||++-|. ..+.|+.+..+.++ +++.+ +--+.++  .+++-..++.+.|.
T Consensus       111 ~~~~~~~~~~DiliPcA-~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~ll~~~gI~  171 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPCA-TQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMV  171 (255)
T ss_dssp             ETCCGGGSCCSEEECCS-CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHCTTCE
T ss_pred             chhhcccccccEEeecc-ccccccHHHHHhhhhcCceEEecCCCCCcchHHHHHHHHhcCCE
Confidence            2333333 589998886 66778877777775 34544 4333332  33332235555553

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.49  E-value=0.0002  Score=56.05  Aligned_cols=88  Identities=19%  Similarity=0.292  Sum_probs=58.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC-CEEE-EEeCChhhH-HHHHhCCCcc-------------------cCHHHHHHhCCe
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG-CVIY-ITEIDPICA-LQACMDGFSV-------------------VKLNEVIRTVDI  167 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G-~~Vi-~~d~~~~~~-~~a~~~g~~~-------------------~~l~e~~~~aDv  167 (258)
                      ++|+|-|+|+||+.+.+.+...+ .+++ +.|+++... ..+...++..                   -+..++.+++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            58999999999999999987776 5644 456665332 2233333221                   135566778999


Q ss_pred             eeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        168 VVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       168 vi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      |++|||...... +.-..++.|..+|-.|..
T Consensus        82 ViEcTG~f~~~~-~~~~hl~~G~K~vi~~~~  111 (171)
T d1cf2o1          82 VIDCTPEGIGAK-NLKMYKEKGIKAIFQGGE  111 (171)
T ss_dssp             EEECCSTTHHHH-HHHHHHHTTCEEEECTTS
T ss_pred             EEEccCCCCCHH-HHHHHHHcCCCEEEECCC
Confidence            999998754432 333446677788777655

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.47  E-value=8.8e-05  Score=57.56  Aligned_cols=92  Identities=20%  Similarity=0.303  Sum_probs=61.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHH-HHHhC--CC-----c---ccCHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACMD--GF-----S---VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~-~a~~~--g~-----~---~~~l~e~~~~aDvvi~~~~  173 (258)
                      ++..+|+|||+|.+|..+|..+...|.  ++..+|+++.+.. ++...  ..     .   .....+.+++||+|+.+.|
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg   97 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAG   97 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecC
Confidence            467899999999999999999999885  6999999876643 12111  11     0   1123455788999999743


Q ss_pred             ccc--------cccH---------HHHhcCCCCcEEEecCCC
Q psy16115        174 NKN--------VVTR---------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~~--------~i~~---------~~l~~~k~g~~ivnvg~~  198 (258)
                      .+.        .+..         ..+....+++++++++.+
T Consensus        98 ~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          98 VRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             CCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            221        1110         123334678899998866

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.44  E-value=0.00029  Score=53.55  Aligned_cols=88  Identities=16%  Similarity=0.241  Sum_probs=59.7

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhC-CCc----------ccCHHHHHHhCCeeeeccCcc
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQACMD-GFS----------VVKLNEVIRTVDIVVTATGNK  175 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~-g~~----------~~~l~e~~~~aDvvi~~~~~~  175 (258)
                      .+|+|||+ |.+|..+|..+...|.  ++..+|.++.+.+ +... ...          ..+..+.+++||+|+.+.+.+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~-a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV-AADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH-HHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh-hHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            37999995 9999999999998886  5999999876543 2221 111          124567789999999975421


Q ss_pred             c--------ccc------HH---HHhcCCCCcEEEecCCC
Q psy16115        176 N--------VVT------RE---HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 ~--------~i~------~~---~l~~~k~g~~ivnvg~~  198 (258)
                      .        ++.      ++   .+....|.++++.++.+
T Consensus        80 ~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP  119 (144)
T d1mlda1          80 RKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP  119 (144)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            1        111      11   23334678999999876

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.40  E-value=8.1e-05  Score=56.56  Aligned_cols=89  Identities=16%  Similarity=0.233  Sum_probs=55.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHH-HHHh--CCCc-------ccCHHHHHHhCCeeeeccCccc-
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACM--DGFS-------VVKLNEVIRTVDIVVTATGNKN-  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~-~a~~--~g~~-------~~~l~e~~~~aDvvi~~~~~~~-  176 (258)
                      ++|+|||+|.+|..+|..+...|.  ++.++|+++.+.. .+.+  ....       .....+.++++|+|+.+.+.+. 
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            589999999999999999988875  7999999886532 2222  1111       1123445778999999843221 


Q ss_pred             --------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 --------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 --------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                                    ++.  .+.+....|.+++++++.+
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence                          111  0123344678999998765

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.38  E-value=0.00032  Score=58.03  Aligned_cols=42  Identities=24%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|++++++++.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~   46 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQL   46 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            7999999999877 99999999999999999999998876543

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.34  E-value=0.00016  Score=55.76  Aligned_cols=37  Identities=32%  Similarity=0.369  Sum_probs=33.9

Q ss_pred             EEEEE-cCchHHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        111 QVVLC-GYGEVGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       111 ~V~Ii-G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ||+|+ |.|.||+.+|+.|...|++|++++|++++...
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~   39 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEA   39 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            68999 78999999999999999999999999987654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.33  E-value=0.00026  Score=53.64  Aligned_cols=88  Identities=13%  Similarity=0.060  Sum_probs=58.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh-------CCC----cccCHHHHHHhCCeeeeccCccc
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM-------DGF----SVVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~-------~g~----~~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      +|+|||+|.+|..+|..+...|.  ++..+|+++.+.+. +..       ...    ....-.+.++++|+|+.+.+.+.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~~   81 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLAR   81 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEeccccC
Confidence            79999999999999999987774  69999999876432 111       111    11122467889999999754211


Q ss_pred             ---------------ccc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 ---------------VVT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ---------------~i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                                     ++.  .+.+....|.+++++++.+
T Consensus        82 ~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1ojua1          82 KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (142)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence                           111  0123445678999999876

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.32  E-value=0.00015  Score=55.14  Aligned_cols=89  Identities=18%  Similarity=0.214  Sum_probs=58.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHHH-HHh--CC-----C-c--ccCHHHHHHhCCeeeeccCccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICALQ-ACM--DG-----F-S--VVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~-a~~--~g-----~-~--~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      .+|+|||+|.+|..+|..+...|.  ++..+|+++.+.+. +..  ..     . .  ..+-.+.++++|+|+.+.|.+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~   81 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ   81 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccccc
Confidence            479999999999999999988775  69999999876431 111  11     0 1  1122345788999999854321


Q ss_pred             c---------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        177 V---------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~---------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      .               +.  ...+....++++++.++.+
T Consensus        82 ~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  120 (143)
T d1llda1          82 KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP  120 (143)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence            1               10  0123344678899888765

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.28  E-value=0.00047  Score=57.06  Aligned_cols=44  Identities=14%  Similarity=0.258  Sum_probs=39.5

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQAC  149 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~  149 (258)
                      +|+||+++|.|.+. ||+.+|+.|...|++|+++|+++++++...
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~   46 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATA   46 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            47999999999988 999999999999999999999988766543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.28  E-value=0.00048  Score=52.99  Aligned_cols=89  Identities=19%  Similarity=0.312  Sum_probs=60.6

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhCCC-EE-EEEeCChhh--HHHHHhCCCccc--CHHHHHH-----hCCeeeeccCcc-c
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGLGC-VI-YITEIDPIC--ALQACMDGFSVV--KLNEVIR-----TVDIVVTATGNK-N  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~G~-~V-i~~d~~~~~--~~~a~~~g~~~~--~l~e~~~-----~aDvvi~~~~~~-~  176 (258)
                      -+++|+|+|.||+. +.+.++.+.. ++ .++++++..  ...+.+.|....  ..+++++     +.|+|+.|+... +
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            48999999999985 6678887654 54 456877653  234666776532  3555543     579999987543 3


Q ss_pred             cccHHHHhcCCCCcEEEecCCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .-.+..++..+.|..++|-+..
T Consensus        85 ~~~~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          85 VQNEALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             HHHHHHHHHHCTTCEEEECSTT
T ss_pred             HHhHHHHHHHHcCCEEEEcccc
Confidence            3333456678999999998753

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.26  E-value=0.0005  Score=53.70  Aligned_cols=81  Identities=9%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc-----ccCHHHHHH--hCCeeeeccCccccccH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS-----VVKLNEVIR--TVDIVVTATGNKNVVTR  180 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~-----~~~l~e~~~--~aDvvi~~~~~~~~i~~  180 (258)
                      ++||||+|.+|+..++.++.. +.+++ ++|+++++... +.+.+..     +.+++++++  +.|+|++|+.+..-.. 
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~-   81 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE-   81 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH-
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc-
Confidence            799999999999999999877 56765 57999877543 3444431     458899886  4799999875443332 


Q ss_pred             HHHhcCCCCcEE
Q psy16115        181 EHMDKMKNGCVV  192 (258)
Q Consensus       181 ~~l~~~k~g~~i  192 (258)
                      -....++.|.-+
T Consensus        82 ~~~~~l~~g~~v   93 (184)
T d1ydwa1          82 WAIKAAEKGKHI   93 (184)
T ss_dssp             HHHHHHTTTCEE
T ss_pred             hhhhhhhcccee
Confidence            334445555443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00012  Score=49.90  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      |||||+|.|..|++++..++.+|.+++++|.++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            69999999999999999999999999999987654

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00018  Score=59.66  Aligned_cols=66  Identities=45%  Similarity=0.802  Sum_probs=61.5

Q ss_pred             hhHHHHHHHHHhCCCCCCCCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcc
Q psy16115         29 IPQALALIELFNAPAGRYKSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPS   95 (258)
Q Consensus        29 ~~~~l~~~~l~~~~~~~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   95 (258)
                      ++|++++.+++.+. .++...|+.+|..+|+++|.+.+..+++.++.+++.+.+|+..+..||+.+.
T Consensus       198 ~~q~la~~~L~~~~-~~~~~~Vy~lP~~lDe~VArl~L~~lgv~id~Lt~~Q~~Ylgv~~~Gp~k~~  263 (267)
T d1li4a2         198 TNQVMAQIELWTHP-DKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPD  263 (267)
T ss_dssp             HHHHHHHHHHHHCG-GGCCSEEECCCHHHHHHHHHHHHTTTTCCCCCCCHHHHHHHTSCTTSCCSCT
T ss_pred             HHHHHHHHHHHhCc-cccCCcEEECChHHHHHHHHHHHHhCCcEeccCCHHHHHhCCCCCCCCCCCC
Confidence            48999999999994 7889999999999999999999999999999999999999999999998754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.0005  Score=56.43  Aligned_cols=42  Identities=17%  Similarity=0.344  Sum_probs=37.8

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +|+||+++|.|.+. ||+.+|+.|...|++|++++++++++.+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   44 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVS   44 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            47999999999877 9999999999999999999999877654

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00026  Score=51.38  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICA  145 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~  145 (258)
                      .+.||||+|.|..|++++..++.+|.+++++|.++...
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            45789999999999999999999999999999987653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.00022  Score=55.20  Aligned_cols=92  Identities=16%  Similarity=0.236  Sum_probs=59.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCChhhHH-HHHhC-------CCc---ccCHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDPICAL-QACMD-------GFS---VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~-~a~~~-------g~~---~~~l~e~~~~aDvvi~~~~  173 (258)
                      ++..+|+|||+|.+|..+|..+...|.  ++.++|+++.++. .+...       +..   ...-.+.++++|+|+.+.|
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvitag   96 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITAG   96 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECCS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEecc
Confidence            456799999999999999999998885  6999999876543 11111       111   1122344578999998743


Q ss_pred             cc--------ccccH------HH---HhcCCCCcEEEecCCC
Q psy16115        174 NK--------NVVTR------EH---MDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 ~~--------~~i~~------~~---l~~~k~g~~ivnvg~~  198 (258)
                      .+        ..+..      +.   +....+++++++++.+
T Consensus        97 ~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP  138 (159)
T d2ldxa1          97 ARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP  138 (159)
T ss_dssp             CCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence            21        12211      11   2234678888888765

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=8.5e-05  Score=57.81  Aligned_cols=105  Identities=15%  Similarity=0.154  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHH-HhCCCcccCHHHHHHhCCeeeeccC--ccc-------
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQA-CMDGFSVVKLNEVIRTVDIVVTATG--NKN-------  176 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a-~~~g~~~~~l~e~~~~aDvvi~~~~--~~~-------  176 (258)
                      ++++|+|+|+|-.|++++..|+..|+ +|.+++|++++.+.. ...+....+.. ...++|+||.||.  ..+       
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~-~~~~~DliINaTpiGm~~~~~~~~l   94 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL-ENQQADILVNVTSIGMKGGKEEMDL   94 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC-TTCCCSEEEECSSTTCTTSTTTTSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc-cccchhhheeccccCCccccccccc
Confidence            68999999999999999999999998 699999999876542 22333222110 1246899999862  211       


Q ss_pred             cccHHHHhcCCCCcEEEecCCC-Chhhchhhh-cCCCceeee
Q psy16115        177 VVTREHMDKMKNGCVVCNMGHS-NTEIDVNSL-RTPDLTWEK  216 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~~-~~~~~~~~l-~~~~i~~~~  216 (258)
                      .++.   ..++++.+++|+--. .+..++... ..|.-.+.|
T Consensus        95 ~~~~---~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~G  133 (167)
T d1npya1          95 AFPK---AFIDNASVAFDVVAMPVETPFIRYAQARGKQTISG  133 (167)
T ss_dssp             SSCH---HHHHHCSEEEECCCSSSSCHHHHHHHHTTCEEECH
T ss_pred             cccH---hhcCCcceEEEEeeccCCCHHHHHHHHCCCeEEEC
Confidence            1222   224567899998665 333344433 333333333

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00064  Score=55.77  Aligned_cols=43  Identities=21%  Similarity=0.415  Sum_probs=38.6

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      .|+||+++|.|.+. ||+.+|+.|...|++|+++|+++.++.+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~   47 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSL   47 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence            47999999999888 99999999999999999999998876543

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.18  E-value=0.00015  Score=56.48  Aligned_cols=82  Identities=15%  Similarity=0.222  Sum_probs=54.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhC-CCE-EEEEeCChhhHHHHHhCCC-cccCHHHHHHhCCeeeeccCccccccHHHHhcC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGL-GCV-IYITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTATGNKNVVTREHMDKM  186 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~-G~~-Vi~~d~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~  186 (258)
                      -+|+|+|+|.||+..++.++.. +.+ |-++|+++....   ..+. ...+.++...+.|+|++|+.+..-. .-..+.+
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-~~a~~aL   79 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDI-PEQAPKF   79 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHH-HHHHHHH
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccH-HHHHHHH
Confidence            4799999999999999999886 566 445787765421   1122 2335566667899999987544322 2444556


Q ss_pred             CCCcEEEec
Q psy16115        187 KNGCVVCNM  195 (258)
Q Consensus       187 k~g~~ivnv  195 (258)
                      +.|.-+|.+
T Consensus        80 ~aG~~vv~~   88 (170)
T d1f06a1          80 AQFACTVDT   88 (170)
T ss_dssp             TTTSEEECC
T ss_pred             HCCCcEEEe
Confidence            777665543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00043  Score=53.14  Aligned_cols=64  Identities=13%  Similarity=0.087  Sum_probs=47.0

Q ss_pred             EEEEEcCchHHHH-HHHHHHhC-CCEE-EEEeCChhhHHH-HHhCCCc-ccCHHHHHHhCCeeeeccCc
Q psy16115        111 QVVLCGYGEVGKG-CCQSLKGL-GCVI-YITEIDPICALQ-ACMDGFS-VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       111 ~V~IiG~G~IG~~-~a~~l~~~-G~~V-i~~d~~~~~~~~-a~~~g~~-~~~l~e~~~~aDvvi~~~~~  174 (258)
                      +|||||+|.+|+. ....++.. +.++ -++|+++.+... +...++. +.+.+++..+.|+|++|+.+
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~   71 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSST   71 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCT
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccc
Confidence            7999999999976 56677665 5674 468998887654 3344554 34678888899999998643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.15  E-value=0.00015  Score=56.46  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCChhh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDPIC  144 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~~~  144 (258)
                      .+|+|+|||.|+.|+.+|..|+..|++ |+++++.+.-
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            479999999999999999999999995 9999987643

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00062  Score=56.05  Aligned_cols=46  Identities=24%  Similarity=0.416  Sum_probs=39.5

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDG  152 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g  152 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|++++..+.+.+.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~   49 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAIG   49 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHT
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC
Confidence            6899999999777 999999999999999999999987765544433

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=97.09  E-value=0.00025  Score=57.40  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=31.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      ||+|+|||.|+-|..+|..|+..|.+|+++|.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            6999999999999999999999999999998754

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.09  E-value=0.0016  Score=50.09  Aligned_cols=92  Identities=16%  Similarity=0.179  Sum_probs=67.2

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh-----HHHHHh----CCC--c-ccCHHHHHHhCCeeeecc-
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC-----ALQACM----DGF--S-VVKLNEVIRTVDIVVTAT-  172 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~----~g~--~-~~~l~e~~~~aDvvi~~~-  172 (258)
                      +.|++|+++|-|. +..+.+..+..+|+++.++.+....     ...+.+    .+.  . ..++++.++++|+|+.-. 
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~~   81 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVW   81 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecce
Confidence            6899999999877 9999999999999999988553211     111211    121  1 347899999999998741 


Q ss_pred             ---C------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 ---G------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ---~------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                         +            ....++.+.++.+|++++|...+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~  122 (163)
T d1pvva2          82 ASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPA  122 (163)
T ss_dssp             CCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCC
T ss_pred             eecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCcc
Confidence               0            2245777888999999999998863

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.08  E-value=0.001  Score=54.47  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=39.1

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHh
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACM  150 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~  150 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|+++.++++..+
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~   47 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE   47 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            6899999999877 9999999999999999999999888765443

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00083  Score=55.36  Aligned_cols=45  Identities=24%  Similarity=0.375  Sum_probs=39.4

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHh
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACM  150 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~  150 (258)
                      .|+||+++|.|.+. ||+.+|+.|...|++|++.|+++++++...+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   48 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQ   48 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            37999999999877 9999999999999999999999887665433

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.04  E-value=0.00055  Score=56.71  Aligned_cols=44  Identities=18%  Similarity=0.308  Sum_probs=39.0

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      ++|+||+++|.|... ||+.+|+.|...|++|++.++++.+++++
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~   46 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDEC   46 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            458999999999776 99999999999999999999998776543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.97  E-value=0.00075  Score=55.82  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      ++|+||+++|.|.+. ||+.+|+.|...|++|++.|++++++++.
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~   48 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDC   48 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            468999999999987 99999999999999999999998876543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00048  Score=54.17  Aligned_cols=37  Identities=14%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      ..+|+|+|||.|+.|+..|..|...|.+|+++|.++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            3689999999999999999999999999999998764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.00068  Score=55.88  Aligned_cols=42  Identities=21%  Similarity=0.358  Sum_probs=38.1

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +|+||+++|.|.+. ||+.+|+.|...|++|+++|++.+++.+
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~   44 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASE   44 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            57999999999887 9999999999999999999999877543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.0007  Score=52.21  Aligned_cols=63  Identities=11%  Similarity=-0.017  Sum_probs=43.2

Q ss_pred             EEEEEcCchHHHHHHHH--HHh---C-CCEEEEEeCChhhHHHHHhC-------CCc---ccCHHHHHHhCCeeeeccC
Q psy16115        111 QVVLCGYGEVGKGCCQS--LKG---L-GCVIYITEIDPICALQACMD-------GFS---VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~--l~~---~-G~~Vi~~d~~~~~~~~a~~~-------g~~---~~~l~e~~~~aDvvi~~~~  173 (258)
                      +|.|||+|.+|...+-.  ++.   + +-++..+|+++.+...+...       ...   ..+.++.+++||+|+.+.+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            69999999888655532  222   2 34799999999886543221       111   2467888999999999854

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00092  Score=54.91  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=39.1

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .++.||+++|.|.+. ||+.+|+.+...|++|+++|++++++++
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~   46 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEE   46 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            358999999999998 9999999999999999999999987654

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.00037  Score=57.08  Aligned_cols=67  Identities=16%  Similarity=0.213  Sum_probs=47.8

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccC---HHHHH-------HhCCeeeecc
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVK---LNEVI-------RTVDIVVTAT  172 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~---l~e~~-------~~aDvvi~~~  172 (258)
                      .|+||+++|.|.+. ||+.+|+.|...|++|++.+++...........++..+   .++++       ..-|+++.++
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA   81 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNA   81 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEEC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeee
Confidence            37999999999887 99999999999999999999987654332222222222   22222       2469998864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00085  Score=54.73  Aligned_cols=43  Identities=16%  Similarity=0.222  Sum_probs=38.8

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      +|+||+++|.|.+. ||+.+|+.|...|++|++.+++.++++..
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   45 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQ   45 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHH
Confidence            47999999999888 99999999999999999999998776543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.88  E-value=0.0008  Score=51.68  Aligned_cols=65  Identities=14%  Similarity=0.227  Sum_probs=46.6

Q ss_pred             EEEEEcCchHHHH-HHHHHHhC-CCEEEEEeCChhhHHHH-HhCCCc--ccCHHHHHH-hCCeeeeccCcc
Q psy16115        111 QVVLCGYGEVGKG-CCQSLKGL-GCVIYITEIDPICALQA-CMDGFS--VVKLNEVIR-TVDIVVTATGNK  175 (258)
Q Consensus       111 ~V~IiG~G~IG~~-~a~~l~~~-G~~Vi~~d~~~~~~~~a-~~~g~~--~~~l~e~~~-~aDvvi~~~~~~  175 (258)
                      +|||||+|.+|+. ....++.. +..+.++|+++.+.... ...+..  +.+.+++++ +.|+|++|+.+.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~   73 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD   73 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccc
Confidence            7999999999976 56677666 45788899998876543 344543  456677665 579999986433

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.87  E-value=0.00067  Score=56.19  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=39.5

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      ++|+||+++|.|.+. ||+.+|+.|...|++|+++++++.++.+.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~   48 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNEC   48 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            468999999999888 99999999999999999999998876543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.002  Score=49.97  Aligned_cols=63  Identities=22%  Similarity=0.278  Sum_probs=43.5

Q ss_pred             CCEEEEEcCchHHHHHH---HHHH--hC-CCEEEEEeCChhhHHHHH--------hCCCc-----ccCHHHHHHhCCeee
Q psy16115        109 GKQVVLCGYGEVGKGCC---QSLK--GL-GCVIYITEIDPICALQAC--------MDGFS-----VVKLNEVIRTVDIVV  169 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a---~~l~--~~-G~~Vi~~d~~~~~~~~a~--------~~g~~-----~~~l~e~~~~aDvvi  169 (258)
                      +-+++|||+|.+|...+   ..++  .+ +-+++.+|+++++++...        ..+..     ..+.++.+++||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            46899999999996532   2332  22 348999999988764311        12221     247899999999999


Q ss_pred             ec
Q psy16115        170 TA  171 (258)
Q Consensus       170 ~~  171 (258)
                      .+
T Consensus        82 ~~   83 (171)
T d1obba1          82 NT   83 (171)
T ss_dssp             EC
T ss_pred             ee
Confidence            86

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.00071  Score=48.96  Aligned_cols=35  Identities=23%  Similarity=0.225  Sum_probs=32.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .++++|||.|.||..+|..+..+|.+|+++++.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            48999999999999999999999999999988764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.83  E-value=0.00067  Score=49.72  Aligned_cols=35  Identities=23%  Similarity=0.380  Sum_probs=32.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      -++++|||.|.||..+|..+..+|.+|+++++.+.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            37999999999999999999999999999988664

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00082  Score=55.08  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=38.4

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      +|+||++.|.|.+. ||+.+|+.|...|++|++++++++++++.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~   44 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAI   44 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            37899999999887 99999999999999999999998876543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00076  Score=48.87  Aligned_cols=35  Identities=23%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      -++++|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            37899999999999999999999999999988764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0014  Score=49.62  Aligned_cols=88  Identities=17%  Similarity=0.244  Sum_probs=55.8

Q ss_pred             EEEEEc-CchHHHHHHHHHH-hC--CCEEEEEeCChhhHHHHHhC--CC-c-------ccCHHHHHHhCCeeeeccCcc-
Q psy16115        111 QVVLCG-YGEVGKGCCQSLK-GL--GCVIYITEIDPICALQACMD--GF-S-------VVKLNEVIRTVDIVVTATGNK-  175 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~-~~--G~~Vi~~d~~~~~~~~a~~~--g~-~-------~~~l~e~~~~aDvvi~~~~~~-  175 (258)
                      +|+||| .|.+|..+|..++ ..  +-++..+|..+...-.+...  .. .       ..+..+.+++||+|+.+.|.+ 
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~~   81 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVRR   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCccC
Confidence            799999 5999999998775 33  45799999876432222221  11 0       122355688999999985432 


Q ss_pred             -------cccc--H-------HHHhcCCCCcEEEecCCC
Q psy16115        176 -------NVVT--R-------EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       176 -------~~i~--~-------~~l~~~k~g~~ivnvg~~  198 (258)
                             .++.  .       +.+....|+++++.++.+
T Consensus        82 k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          82 KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence                   1111  0       223444678899998876

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.76  E-value=0.0008  Score=48.97  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .++|+|+|.|.||..+|..+..+|.+|+++++.+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            48999999999999999999999999999987653

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.76  E-value=0.00098  Score=53.83  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             CCEEEEEcCchHHHH-HHHHHHhC-CCEEE-EEeCChhhHHH-HHhCCCc------ccCHHHHHH--hCCeeeeccCc
Q psy16115        109 GKQVVLCGYGEVGKG-CCQSLKGL-GCVIY-ITEIDPICALQ-ACMDGFS------VVKLNEVIR--TVDIVVTATGN  174 (258)
Q Consensus       109 g~~V~IiG~G~IG~~-~a~~l~~~-G~~Vi-~~d~~~~~~~~-a~~~g~~------~~~l~e~~~--~aDvvi~~~~~  174 (258)
                      --+|+|||+|.+|+. .+..++.. +.+|+ ++|+++++... +.+.++.      +.++++++.  +.|+|++++.+
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~  110 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  110 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch
Confidence            358999999999974 55666665 66755 68999988654 3444542      357888886  47889888643

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0013  Score=54.18  Aligned_cols=41  Identities=10%  Similarity=0.097  Sum_probs=37.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ++||+++|.|.+. ||+.+|+.|...|++|+++++++.++++
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~   49 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEE   49 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            7999999999888 9999999999999999999999887654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.74  E-value=0.0012  Score=55.13  Aligned_cols=43  Identities=28%  Similarity=0.328  Sum_probs=37.9

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .+|+||+++|.|.+. ||+.+|+.|...|++|++.|++..++.+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~   64 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKA   64 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            358999999999665 9999999999999999999999876543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.72  E-value=0.0012  Score=54.59  Aligned_cols=42  Identities=14%  Similarity=0.257  Sum_probs=38.3

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|+++.++++.
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~   46 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKV   46 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            7999999999887 99999999999999999999998876554

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.72  E-value=0.008  Score=48.49  Aligned_cols=95  Identities=17%  Similarity=0.212  Sum_probs=71.6

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC--------hh-----hHHHHHhCC--CcccCHHHHHHhCCe
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID--------PI-----CALQACMDG--FSVVKLNEVIRTVDI  167 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~--------~~-----~~~~a~~~g--~~~~~l~e~~~~aDv  167 (258)
                      +..+...+++++|+|.-|..+++++...|. +++.+|+.        ..     +...+....  ....++.+.++.+|+
T Consensus        21 g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~  100 (222)
T d1vl6a1          21 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADF  100 (222)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSE
T ss_pred             CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcce
Confidence            456899999999999999999999999987 59999975        11     111111111  123467888999998


Q ss_pred             eeeccCccccccHHHHhcCCCCcEEEecCCCC
Q psy16115        168 VVTATGNKNVVTREHMDKMKNGCVVCNMGHSN  199 (258)
Q Consensus       168 vi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~  199 (258)
                      ++... +.+++.++.+..|.+..+|.=.+.+.
T Consensus       101 ~~g~~-~~~~~~~e~m~~~~~rPIIFpLSNPt  131 (222)
T d1vl6a1         101 FIGVS-RGNILKPEWIKKMSRKPVIFALANPV  131 (222)
T ss_dssp             EEECS-CSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             ecccc-ccccccHHHHhhcCCCCEEEecCCCc
Confidence            76655 68888888899999999998888873

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.71  E-value=0.0011  Score=50.18  Aligned_cols=63  Identities=16%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCCC--EEEEEeCChhh--HH-HHHh-------CCC--cc----cCHHHHHHhCCeeeec
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPIC--AL-QACM-------DGF--SV----VKLNEVIRTVDIVVTA  171 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G~--~Vi~~d~~~~~--~~-~a~~-------~g~--~~----~~l~e~~~~aDvvi~~  171 (258)
                      +|+|||+ |.+|..+|..+...|.  ++..+|+++..  .+ .+.+       ...  ..    .+..+.+++||+|+.+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVit   81 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIIT   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEe
Confidence            6999995 9999999999998884  79999987632  11 1111       011  10    1133567789999998


Q ss_pred             cC
Q psy16115        172 TG  173 (258)
Q Consensus       172 ~~  173 (258)
                      .|
T Consensus        82 AG   83 (145)
T d1hyea1          82 SG   83 (145)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.71  E-value=0.0013  Score=54.32  Aligned_cols=42  Identities=24%  Similarity=0.390  Sum_probs=38.0

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|+++|++++++++.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~   45 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKA   45 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            6899999999887 99999999999999999999998776543

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00096  Score=55.32  Aligned_cols=42  Identities=19%  Similarity=0.370  Sum_probs=38.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++++|+.+++++.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~   54 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKV   54 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            7999999999988 99999999999999999999999887654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.70  E-value=0.0012  Score=48.32  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+++|+|+|.|.+|..+|..+...|.+|+++++.+.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            578999999999999999999999999999988764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.69  E-value=0.00078  Score=51.04  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCCh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEIDP  142 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~~  142 (258)
                      +||+|+|||.|.+|..+|..|+..|.  +|+++++++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            48999999999999999999998874  799998765

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.69  E-value=0.00095  Score=55.09  Aligned_cols=42  Identities=14%  Similarity=0.262  Sum_probs=38.0

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +++||+++|.|.+. ||+.+|+.|...|++|++.+++..++.+
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~   48 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVE   48 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            57999999999888 9999999999999999999999876543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0014  Score=54.42  Aligned_cols=91  Identities=21%  Similarity=0.253  Sum_probs=58.8

Q ss_pred             CCCEEEEE-cCch-HHHHHHHHHHh-CCCEEEEEeCChhhHHHHHh----CCC-------cccCHH---HHH-------H
Q psy16115        108 GGKQVVLC-GYGE-VGKGCCQSLKG-LGCVIYITEIDPICALQACM----DGF-------SVVKLN---EVI-------R  163 (258)
Q Consensus       108 ~g~~V~Ii-G~G~-IG~~~a~~l~~-~G~~Vi~~d~~~~~~~~a~~----~g~-------~~~~l~---e~~-------~  163 (258)
                      .||+|+|| |.+. ||+.+|+.|.. .|++|++++|++++++.+.+    .+.       +..+.+   +++       .
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            47888655 6555 99999999876 58999999999988665432    222       122222   221       2


Q ss_pred             hCCeeeeccCccc------------------------cccHHHHhcCCCCcEEEecCCC
Q psy16115        164 TVDIVVTATGNKN------------------------VVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       164 ~aDvvi~~~~~~~------------------------~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      .-|++|.+.|...                        .+....+..|++++.+||++..
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~  139 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  139 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence            4699998743210                        1122346778889999999873

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.67  E-value=0.0013  Score=48.05  Aligned_cols=36  Identities=17%  Similarity=0.341  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+++++|||.|.+|..+|..++..|.+|+++++.+.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            579999999999999999999999999999998765

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.001  Score=44.95  Aligned_cols=45  Identities=20%  Similarity=0.170  Sum_probs=39.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCC
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDG  152 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g  152 (258)
                      +|++|+|.|. |-+|....+.++.+|++|+++..++++.+..++.|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            7899999886 88999999999999999999998888876665554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.64  E-value=0.0013  Score=47.62  Aligned_cols=36  Identities=14%  Similarity=0.046  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      ++++++|+|.|.||..+|..++.+|.+|.++++.+.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            689999999999999999999999999999988654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.64  E-value=0.001  Score=53.76  Aligned_cols=36  Identities=17%  Similarity=0.221  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      ..++|+|||.|+.|..+|..|+..|.+|+++|+++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            468999999999999999999999999999998654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.62  E-value=0.0018  Score=52.91  Aligned_cols=43  Identities=14%  Similarity=0.306  Sum_probs=38.8

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQAC  149 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~  149 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.+++.+++.+..
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   46 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAV   46 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            6899999999988 999999999999999999999988765443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.62  E-value=0.0011  Score=52.98  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .-++|+|||.|..|.++|..|...|.+|+++|+++
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999999753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.62  E-value=0.0017  Score=53.65  Aligned_cols=41  Identities=17%  Similarity=0.345  Sum_probs=37.5

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|+++++++.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~   43 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEA   43 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            6899999999888 9999999999999999999999877554

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.61  E-value=0.01  Score=44.77  Aligned_cols=65  Identities=17%  Similarity=0.287  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChhh-----HHHHHhCCCc---ccCHHHHHHhCCeeeec
Q psy16115        107 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPIC-----ALQACMDGFS---VVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       107 l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a~~~g~~---~~~l~e~~~~aDvvi~~  171 (258)
                      +.|.+|+++|=   +++.++.+..+..+|++++++.+....     ...+.+.+..   ..++++.++++|+|...
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~   77 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVT   77 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEEC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEee
Confidence            57999999997   689999999999999998887553222     2223334432   35789999999998875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.61  E-value=0.0017  Score=53.18  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=38.2

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|+++++++..
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~   46 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAM   46 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            6999999999877 99999999999999999999999876543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.60  E-value=0.0012  Score=54.88  Aligned_cols=41  Identities=20%  Similarity=0.278  Sum_probs=37.7

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.+++++++++
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~   44 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEE   44 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            6899999999887 9999999999999999999999887654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.60  E-value=0.00093  Score=48.94  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=30.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      -++++|||.|.||..+|..++.+|.+|+++.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            368999999999999999999999999998765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0036  Score=47.08  Aligned_cols=84  Identities=14%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHH----HHHhCCCccc----CHHHH-----HHhCCeeeeccCccc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICAL----QACMDGFSVV----KLNEV-----IRTVDIVVTATGNKN  176 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~----~a~~~g~~~~----~l~e~-----~~~aDvvi~~~~~~~  176 (258)
                      ..+.|+|+|++|+.+++.|...|.+|+++|.++++..    .....|+.+.    +-.+.     +.++|.++.+++...
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~   83 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence            4699999999999999999999999999998876422    2333455422    12223     346899988865432


Q ss_pred             --cccHHHHhcCCCCcEEE
Q psy16115        177 --VVTREHMDKMKNGCVVC  193 (258)
Q Consensus       177 --~i~~~~l~~~k~g~~iv  193 (258)
                        +.-....+.+.+...++
T Consensus        84 ~n~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          84 DNAFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             HHHHHHHHHHHHTSSSCEE
T ss_pred             HHHHHHHHHHHhCCCCceE
Confidence              22223344455554443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.0026  Score=49.42  Aligned_cols=65  Identities=23%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             CEEEEEcCchHHHH-HHHHHHhCC--CEEE-EEeCChhhHHH-HHhCCCc--ccCHHHHHHh--CCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKG-CCQSLKGLG--CVIY-ITEIDPICALQ-ACMDGFS--VVKLNEVIRT--VDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~-~a~~l~~~G--~~Vi-~~d~~~~~~~~-a~~~g~~--~~~l~e~~~~--aDvvi~~~~~  174 (258)
                      -++||||+|.+|+. .+..++..+  .+++ ++|+++.+... +...+..  +.+++++++.  .|+|++|+.+
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~   77 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV   77 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence            37999999999986 577787754  3655 68999887654 3334443  4689999874  6889988643

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.59  E-value=0.012  Score=44.50  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=62.7

Q ss_pred             cCCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChhh---HHHHHhCCCc---ccCHHHHHHhCCeeeecc-----
Q psy16115        107 FGGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPIC---ALQACMDGFS---VVKLNEVIRTVDIVVTAT-----  172 (258)
Q Consensus       107 l~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~~---~~~a~~~g~~---~~~l~e~~~~aDvvi~~~-----  172 (258)
                      |.|.+|+++|=   |++.++.+..+..+|++++++-..+..   .......+..   ..++++.++++|+|....     
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            46899999995   569999999999999986544322211   1122233433   347889999999998631     


Q ss_pred             ----------CccccccHHHHhcCCCCcEEEecCC
Q psy16115        173 ----------GNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       173 ----------~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                                -....++.+.++.++++++|..++.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LP  115 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLP  115 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSC
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCC
Confidence                      1223467777888888988888765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.57  E-value=0.0015  Score=47.53  Aligned_cols=36  Identities=17%  Similarity=0.126  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      ..++++|||.|.||..+|..++.+|.+|+++.+.+.
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            348899999999999999999999999999987654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.0013  Score=48.24  Aligned_cols=35  Identities=17%  Similarity=0.154  Sum_probs=32.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      -++++|+|.|.||..+|..++.+|.+|+++++.+.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            37999999999999999999999999999988754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0018  Score=54.59  Aligned_cols=41  Identities=20%  Similarity=0.272  Sum_probs=37.7

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.+++++++..
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~   51 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKS   51 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            7999999999888 9999999999999999999999877654

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.54  E-value=0.002  Score=52.86  Aligned_cols=43  Identities=12%  Similarity=0.064  Sum_probs=38.3

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      +.+.||+++|.|.+. ||+.+|+.|...|++|+++++++++++.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~   49 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDS   49 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHH
Confidence            457899999999876 9999999999999999999999887654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.53  E-value=0.002  Score=53.64  Aligned_cols=41  Identities=12%  Similarity=0.262  Sum_probs=37.6

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|+++|++++++.+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~   44 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAE   44 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            6899999999876 9999999999999999999999887654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0012  Score=54.19  Aligned_cols=44  Identities=16%  Similarity=0.283  Sum_probs=38.7

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHh
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACM  150 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~  150 (258)
                      |.||+++|.|.+. ||+.+|+.|...|++|++.|+++.++++..+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~   48 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEK   48 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            7999999999877 9999999999999999999999877654333

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.51  E-value=0.0015  Score=53.80  Aligned_cols=42  Identities=19%  Similarity=0.376  Sum_probs=37.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |+||++.|.|.+. ||+.+|+.|...|++|++.|++.++++..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~   45 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARAT   45 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            6899999999877 99999999999999999999998876543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.51  E-value=0.0015  Score=54.32  Aligned_cols=41  Identities=22%  Similarity=0.358  Sum_probs=37.6

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      |+||++.|.|.+. ||+.+|+.|...|++|++.|++++++++
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   43 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEE   43 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            6899999999887 9999999999999999999999877654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.50  E-value=0.002  Score=52.24  Aligned_cols=63  Identities=21%  Similarity=0.304  Sum_probs=47.6

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc--cc----CHHHHHH---hCCeeeecc
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS--VV----KLNEVIR---TVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~--~~----~l~e~~~---~aDvvi~~~  172 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|++++.+++   .+.+  ..    ..+++++   +.|+++.++
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~---~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnA   74 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR---SGHRYVVCDLRKDLDLLFEKVKEVDILVLNA   74 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH---TCSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh---cCCcEEEcchHHHHHHHHHHhCCCcEEEecc
Confidence            5899999999877 9999999999999999999999876543   2222  11    2344443   479998864

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.46  E-value=0.016  Score=43.89  Aligned_cols=92  Identities=16%  Similarity=0.086  Sum_probs=61.2

Q ss_pred             cCCCEEEEEcC--chHHHHHHHHHHhCCCEEEEEeCChhh-----HH----HHHhCCCc---ccCHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGY--GEVGKGCCQSLKGLGCVIYITEIDPIC-----AL----QACMDGFS---VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~--G~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~----~a~~~g~~---~~~l~e~~~~aDvvi~~~  172 (258)
                      |.|++|+++|=  .++-.+.+..+..+|+++.++.+....     ..    .+.+.+..   ..++++.++++|+|+.-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            47999999994  479999999999999998887553221     11    12222322   347899999999998842


Q ss_pred             -------C----------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 -------G----------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 -------~----------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                             +          .....+.......|+++++..++..
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~  123 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPA  123 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCc
Confidence                   0          1112232233346788898888764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0017  Score=53.46  Aligned_cols=42  Identities=21%  Similarity=0.429  Sum_probs=37.9

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .|+||+++|.|.+. ||+.+|+.|...|++|++.+++++++++
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~   50 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH   50 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            37999999999887 9999999999999999999999877654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.45  E-value=0.0017  Score=53.27  Aligned_cols=42  Identities=19%  Similarity=0.233  Sum_probs=38.0

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|+++++++++++..
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~   46 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKA   46 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            7999999999877 99999999999999999999998876543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.45  E-value=0.0029  Score=48.94  Aligned_cols=65  Identities=14%  Similarity=0.046  Sum_probs=43.3

Q ss_pred             CCEEEEEcCchHHHH--HHHHHHh-CC---CEEEEEeCChhhHHHHHh--------CCCc-----ccCHHHHHHhCCeee
Q psy16115        109 GKQVVLCGYGEVGKG--CCQSLKG-LG---CVIYITEIDPICALQACM--------DGFS-----VVKLNEVIRTVDIVV  169 (258)
Q Consensus       109 g~~V~IiG~G~IG~~--~a~~l~~-~G---~~Vi~~d~~~~~~~~a~~--------~g~~-----~~~l~e~~~~aDvvi  169 (258)
                      .-+|+|||+|.+|..  +...++. ..   -+++.+|+++++++....        .+..     ..+..+.+++||+|+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            458999999988754  3333332 22   369999999988652111        1221     246889999999999


Q ss_pred             eccC
Q psy16115        170 TATG  173 (258)
Q Consensus       170 ~~~~  173 (258)
                      .+.+
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9854

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.42  E-value=0.0018  Score=53.43  Aligned_cols=42  Identities=17%  Similarity=0.248  Sum_probs=37.8

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.+++.+++++.
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~   45 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEET   45 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            6899999999877 99999999999999999999998876543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=0.003  Score=51.63  Aligned_cols=42  Identities=19%  Similarity=0.238  Sum_probs=36.2

Q ss_pred             cccCCCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        105 VMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       105 ~~l~g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      .+|+||+++|.|++   -||+.+|+.|...|++|++.++++....
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~   48 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRP   48 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence            45899999999975   3999999999999999999998865543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.41  E-value=0.0023  Score=46.84  Aligned_cols=82  Identities=17%  Similarity=0.318  Sum_probs=53.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCccc----CHHHHH-----HhCCeeeeccCccc--cc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVV----KLNEVI-----RTVDIVVTATGNKN--VV  178 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~----~l~e~~-----~~aDvvi~~~~~~~--~i  178 (258)
                      |.+.|+|+|.+|+.+++.|+..  .|.++|.++.+.+.....|+.+.    +-.+.+     .+++.++.++....  +.
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~   78 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH   78 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence            4689999999999999999744  57788989888777777776532    123333     35788888764332  22


Q ss_pred             cHHHHhcCCCCcEEE
Q psy16115        179 TREHMDKMKNGCVVC  193 (258)
Q Consensus       179 ~~~~l~~~k~g~~iv  193 (258)
                      -....+.+.|...++
T Consensus        79 ~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          79 CILGIRKIDESVRII   93 (129)
T ss_dssp             HHHHHHHHCSSSCEE
T ss_pred             HHHHHHHHCCCceEE
Confidence            223444555554433

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.41  E-value=0.001  Score=48.73  Aligned_cols=37  Identities=19%  Similarity=0.235  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      ..++++|||.|.||..+|..+..+|.+|+++++++.-
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            3589999999999999999999999999999887653

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.40  E-value=0.0024  Score=52.24  Aligned_cols=41  Identities=17%  Similarity=0.374  Sum_probs=36.1

Q ss_pred             cCCCEEEEEcC-ch--HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        107 FGGKQVVLCGY-GE--VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       107 l~g~~V~IiG~-G~--IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      |+||+++|.|+ |.  ||+.+|+.|...|++|++.+++..+..+
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~   47 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ   47 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH
Confidence            68999999995 54  9999999999999999999998877543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.39  E-value=0.0013  Score=54.05  Aligned_cols=35  Identities=29%  Similarity=0.417  Sum_probs=32.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      ..|+|+|||.|..|..+|..|...|.+|+++|.++
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45899999999999999999999999999998754

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0029  Score=51.87  Aligned_cols=40  Identities=18%  Similarity=0.351  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        108 GGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       108 ~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      .||+++|.|.+. ||+.+|+.|...|++|++.|++++++++
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~   42 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQ   42 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            699999999877 9999999999999999999999887654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.37  E-value=0.0032  Score=44.09  Aligned_cols=65  Identities=20%  Similarity=0.234  Sum_probs=45.9

Q ss_pred             CCCEEEEEcCchHHHHH-HHHHHhCCCEEEEEeCChhh-HHHHHhCCCccc--CHHHHHHhCCeeeecc
Q psy16115        108 GGKQVVLCGYGEVGKGC-CQSLKGLGCVIYITEIDPIC-ALQACMDGFSVV--KLNEVIRTVDIVVTAT  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~-a~~l~~~G~~Vi~~d~~~~~-~~~a~~~g~~~~--~l~e~~~~aDvvi~~~  172 (258)
                      ..+++-+||.|-+|++. |+.|+..|.+|.++|..... .....+.|+...  .-.+.+.+.|+|+..+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~   75 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS   75 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence            67899999999999765 99999999999999986443 223345565432  1223346677776654

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.37  E-value=0.007  Score=44.77  Aligned_cols=87  Identities=21%  Similarity=0.252  Sum_probs=61.9

Q ss_pred             cCCCEEEEEcC----------chHHHHHHHHHHhCCCEEEEEeCChhhH-------HHHHhC-----CCcccCHHHHHHh
Q psy16115        107 FGGKQVVLCGY----------GEVGKGCCQSLKGLGCVIYITEIDPICA-------LQACMD-----GFSVVKLNEVIRT  164 (258)
Q Consensus       107 l~g~~V~IiG~----------G~IG~~~a~~l~~~G~~Vi~~d~~~~~~-------~~a~~~-----g~~~~~l~e~~~~  164 (258)
                      +.+++|+|+|+          +.-...+++.|...|++|.+||+.-...       ......     .....++++++.+
T Consensus        11 ~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~   90 (136)
T d1mv8a3          11 HDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVAS   90 (136)
T ss_dssp             SSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHH
T ss_pred             cCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhh
Confidence            47899999994          4567889999999999999998632211       000000     1123578999999


Q ss_pred             CCeeeeccCccccccHHHHhcCCCCcEEEec
Q psy16115        165 VDIVVTATGNKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       165 aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                      +|++++++..+...  +....++++.+|+|+
T Consensus        91 ~D~ivi~t~h~~f~--~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          91 SDVLVLGNGDELFV--DLVNKTPSGKKLVDL  119 (136)
T ss_dssp             CSEEEECSCCGGGH--HHHHSCCTTCEEEES
T ss_pred             ceEEEEEeCCHHHH--HHHHHhcCCCEEEEC
Confidence            99999998766543  455567778899996

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.36  E-value=0.0019  Score=47.00  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=32.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+++++|+|.|.+|..+|..|..+|.+|+++++.+.
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            458999999999999999999999999999988764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.36  E-value=0.0023  Score=47.39  Aligned_cols=37  Identities=11%  Similarity=0.166  Sum_probs=34.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      .+++++|||.|.+|..+|..++..|.+|+++++.+.-
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            5799999999999999999999999999999987653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.33  E-value=0.0021  Score=51.79  Aligned_cols=36  Identities=19%  Similarity=0.336  Sum_probs=33.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+++|+|||.|+.|...|..|+..|.+|++++.++.
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            789999999999999999999999999999987653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.30  E-value=0.0018  Score=46.58  Aligned_cols=35  Identities=20%  Similarity=0.308  Sum_probs=32.3

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+++.|+|.|.+|..+|..++.+|.+|+++++.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            48999999999999999999999999999988654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.29  E-value=0.0044  Score=47.85  Aligned_cols=63  Identities=13%  Similarity=0.106  Sum_probs=40.8

Q ss_pred             EEEEEcCchHH--HHHHHHHHhC---C-CEEEEEeCChhhHH-HHH---------hCCCc-----ccCHHHHHHhCCeee
Q psy16115        111 QVVLCGYGEVG--KGCCQSLKGL---G-CVIYITEIDPICAL-QAC---------MDGFS-----VVKLNEVIRTVDIVV  169 (258)
Q Consensus       111 ~V~IiG~G~IG--~~~a~~l~~~---G-~~Vi~~d~~~~~~~-~a~---------~~g~~-----~~~l~e~~~~aDvvi  169 (258)
                      +|.|||+|.+|  ..++..++..   . .++..+|+++.+.. ++.         ..+..     ..+..+.+++||+|+
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvVv   82 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVT   82 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEEE
Confidence            79999999765  4444454432   2 37999999875421 111         12222     246788899999999


Q ss_pred             eccC
Q psy16115        170 TATG  173 (258)
Q Consensus       170 ~~~~  173 (258)
                      .+.+
T Consensus        83 ~ta~   86 (169)
T d1s6ya1          83 TQFR   86 (169)
T ss_dssp             ECCC
T ss_pred             Eccc
Confidence            9864

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.25  E-value=0.00021  Score=58.96  Aligned_cols=109  Identities=17%  Similarity=0.239  Sum_probs=73.2

Q ss_pred             CEEEEEcCch--HHHHHHHH------HHhCCCEEEEEeCChhhHHHHHhCC-----------------------------
Q psy16115        110 KQVVLCGYGE--VGKGCCQS------LKGLGCVIYITEIDPICALQACMDG-----------------------------  152 (258)
Q Consensus       110 ~~V~IiG~G~--IG~~~a~~------l~~~G~~Vi~~d~~~~~~~~a~~~g-----------------------------  152 (258)
                      +++.++|+|.  +|..+++.      +...|..|+..|.++++..++...|                             
T Consensus        41 ~~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          41 HSSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             CHHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            4566888886  66667663      5677888999999876532222211                             


Q ss_pred             --------Cc-ccCHHHHHHhCCeeeeccCc----cccccHHHHhcCCCCcEEEecCCCChh---hchhhhcCCCceeee
Q psy16115        153 --------FS-VVKLNEVIRTVDIVVTATGN----KNVVTREHMDKMKNGCVVCNMGHSNTE---IDVNSLRTPDLTWEK  216 (258)
Q Consensus       153 --------~~-~~~l~e~~~~aDvvi~~~~~----~~~i~~~~l~~~k~g~~ivnvg~~~~~---~~~~~l~~~~i~~~~  216 (258)
                              +. ..+..|.++++|+||+|...    ..++ .+..+.++++++++|++..+..   ...+.+..+.+++.+
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~  199 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITS  199 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEE
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEEC
Confidence                    11 13567889999999999633    2355 3677889999999999987332   234566666777776


Q ss_pred             ecc
Q psy16115        217 VRS  219 (258)
Q Consensus       217 ~~~  219 (258)
                      .++
T Consensus       200 ~hp  202 (242)
T d2b0ja2         200 YHP  202 (242)
T ss_dssp             CBC
T ss_pred             CCc
Confidence            654

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.019  Score=43.86  Aligned_cols=92  Identities=13%  Similarity=0.024  Sum_probs=65.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh-----HH----HHHhCCCc---ccCHHHHHHhCCeeeecc-
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC-----AL----QACMDGFS---VVKLNEVIRTVDIVVTAT-  172 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~----~a~~~g~~---~~~l~e~~~~aDvvi~~~-  172 (258)
                      +.|++|+++|-|. +-.+.+..+..+|+++.++.+....     ..    .+.+.|..   ..++++.++.+|+++... 
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~~   81 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTW   81 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCS
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeece
Confidence            6899999999876 8888899999999998887653221     11    12222332   357899999999998752 


Q ss_pred             ---------------CccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 ---------------GNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ---------------~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                                     .....++.+.++.++++++|...+..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHplP~  122 (170)
T d1otha2          82 ISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPR  122 (170)
T ss_dssp             SCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCC
T ss_pred             ecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCCCc
Confidence                           12234666778888999999888765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.19  E-value=0.0022  Score=47.11  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=32.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      ..++++|+|.|.||..+|..++.+|.+|+++++.+.
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            358999999999999999999999999999987654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=96.15  E-value=0.0044  Score=47.03  Aligned_cols=61  Identities=20%  Similarity=0.321  Sum_probs=46.6

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC-cccCHHHHHHhCCeeeec
Q psy16115        108 GGKQVVLCGY---GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG~---G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~  171 (258)
                      .|.+|+++|=   |++..+.+..+..+|+++.++.+......   +... ...++++.++++|+|...
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeee
Confidence            6899999995   68999999999999999888755433221   1222 245788999999999874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0052  Score=42.42  Aligned_cols=63  Identities=14%  Similarity=0.181  Sum_probs=42.4

Q ss_pred             CEEEEEcCchHHH-HHHHHHHhCCCEEEEEeCChhhHH-HHHhCCCccc--CHHHHHHhCCeeeecc
Q psy16115        110 KQVVLCGYGEVGK-GCCQSLKGLGCVIYITEIDPICAL-QACMDGFSVV--KLNEVIRTVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG~-~~a~~l~~~G~~Vi~~d~~~~~~~-~a~~~g~~~~--~l~e~~~~aDvvi~~~  172 (258)
                      .++=++|.|-+|+ ++|+.|+..|+.|.++|+.+.... ...+.|+...  .-.+.+.++|+|+..+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            4688999999998 679999999999999998864422 2334555421  1112234567766653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.07  E-value=0.0035  Score=51.73  Aligned_cols=39  Identities=18%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      +|+||+++|.|.+. ||+.+|+.|...|++|++.+++.+.
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~   43 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKED   43 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHH
Confidence            58999999999877 9999999999999999999987543

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.01  E-value=0.0063  Score=45.68  Aligned_cols=89  Identities=17%  Similarity=0.212  Sum_probs=54.7

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCC--EEEEEeCChhh--HH-HHHhC----CC----cc-cCHHHHHHhCCeeeeccCc
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGC--VIYITEIDPIC--AL-QACMD----GF----SV-VKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~--~~-~a~~~----g~----~~-~~l~e~~~~aDvvi~~~~~  174 (258)
                      .+|+|+| .|.+|..+|..+...|.  ++..+|++...  .+ .+.+.    .+    .. ..-.+.+++||+|+.+.|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence            3799999 69999999999998885  69999975322  11 11111    01    10 1122346789999997432


Q ss_pred             c---cc------------cc--HHHHhcCCCCcEEEecCCC
Q psy16115        175 K---NV------------VT--REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       175 ~---~~------------i~--~~~l~~~k~g~~ivnvg~~  198 (258)
                      +   +.            +.  .+.+....++++++.++.+
T Consensus        81 ~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNP  121 (142)
T d1o6za1          81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP  121 (142)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred             ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecCh
Confidence            1   11            11  0124455678888888765

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.00  E-value=8e-06  Score=60.73  Aligned_cols=50  Identities=6%  Similarity=-0.086  Sum_probs=36.6

Q ss_pred             CCceEECChhhhHHHHhcccCccccccccCCHHHHHhhhcccCCCCCcchhhhccCcCcccCCCEEEEEcCchHHHHHHH
Q psy16115         47 KSDVYLLPKKMDEYVASLHLPTFDAHLTELSDEQAKYMGLNKAGPFKPSYYSLKRSTDVMFGGKQVVLCGYGEVGKGCCQ  126 (258)
Q Consensus        47 ~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~g~~V~IiG~G~IG~~~a~  126 (258)
                      ++.|++.|+..+.++||+++..++..                                    -++++|+|+|.||+.+|+
T Consensus        72 ~i~v~n~~g~~~~~vae~~~~~il~~------------------------------------~r~l~i~G~G~iG~~iA~  115 (121)
T d1qp8a2          72 HVTVAGNAGSNGYGNERVWRQMVMEA------------------------------------VRNLITYATGGRPRNIAK  115 (121)
T ss_dssp             TSCEECCCSSSSSSCHHHHHHHHHHH------------------------------------HHHHHHHHTTSCCSCBCC
T ss_pred             CeEEEECCCCChHHHHHHHHHHHHHh------------------------------------cCCEEEEcCCHHHHHHHH
Confidence            66777777777777777754433211                                    146789999999999999


Q ss_pred             HHHhCC
Q psy16115        127 SLKGLG  132 (258)
Q Consensus       127 ~l~~~G  132 (258)
                      ++++||
T Consensus       116 r~~a~G  121 (121)
T d1qp8a2         116 REDYIG  121 (121)
T ss_dssp             GGGTC-
T ss_pred             HHHhcC
Confidence            999987

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.97  E-value=0.0088  Score=46.21  Aligned_cols=87  Identities=13%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEE-eCCh--hhHHHHHhC----CC-----cc-----------------cCHHHH
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYIT-EIDP--ICALQACMD----GF-----SV-----------------VKLNEV  161 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~-d~~~--~~~~~a~~~----g~-----~~-----------------~~l~e~  161 (258)
                      +|||-|+|+||+.+.+.+...+.+|+.+ |...  +......+.    |.     ..                 .+++++
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~i   81 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPENI   81 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGGC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHHC
Confidence            6899999999999999998888876665 4332  222222221    10     00                 112322


Q ss_pred             ---HHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCC
Q psy16115        162 ---IRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       162 ---~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                         -.++|+|++|+|...... ..-..++.|+.=|-++-+
T Consensus        82 ~W~~~gvD~ViEcTG~f~~~~-~~~~hl~~gakkViisaP  120 (169)
T d1dssg1          82 PWSKAGAEYIVESTGVFTTIE-KASAHFKGGAKKVIISAP  120 (169)
T ss_dssp             CHHHHTCCEEEECSSSCCSHH-HHGGGGTTTCSEEEESSC
T ss_pred             CccccCCCEEEecCceEcCHH-HHHHHHhcCCceEeecCC
Confidence               236899999998775553 444456666655555544

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.97  E-value=0.0041  Score=52.56  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=32.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .|+|+|||+|.-|..+|..|...|.+|++++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            68999999999999999999999999999987654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.94  E-value=0.0058  Score=49.82  Aligned_cols=38  Identities=21%  Similarity=0.340  Sum_probs=35.0

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|+++.+
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            6899999999887 9999999999999999999998754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.93  E-value=0.0065  Score=49.77  Aligned_cols=37  Identities=22%  Similarity=0.337  Sum_probs=33.5

Q ss_pred             cCCCEEEEEcC-c--hHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        107 FGGKQVVLCGY-G--EVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       107 l~g~~V~IiG~-G--~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      |+||+++|.|. |  -||..+|+.|...|++|++.++++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            68999999996 4  3999999999999999999999864

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.89  E-value=0.0057  Score=49.64  Aligned_cols=40  Identities=18%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             cCCCEEEEEcCch---HHHHHHHHHHhCCCEEEEEeCChhhHH
Q psy16115        107 FGGKQVVLCGYGE---VGKGCCQSLKGLGCVIYITEIDPICAL  146 (258)
Q Consensus       107 l~g~~V~IiG~G~---IG~~~a~~l~~~G~~Vi~~d~~~~~~~  146 (258)
                      |+||+++|.|.+.   ||..+|+.|...|++|++.++++....
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~   45 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKG   45 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            6899999999864   999999999999999999999865443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.85  E-value=0.0031  Score=49.20  Aligned_cols=32  Identities=25%  Similarity=0.390  Sum_probs=29.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +|+|||.|+.|..+|..|+..|. +|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            59999999999999999999997 599998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.83  E-value=0.0053  Score=50.65  Aligned_cols=40  Identities=20%  Similarity=0.424  Sum_probs=35.0

Q ss_pred             cccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        105 VMFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      ..|+||+++|.|.+. ||+.+|+.|...|++|++.+++...
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~   54 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   54 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchH
Confidence            347999999999766 9999999999999999999887543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.82  E-value=0.0031  Score=50.61  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      +|+|||.|.-|..+|..|...|.+|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            69999999999999999999999999998754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.77  E-value=0.0055  Score=50.24  Aligned_cols=40  Identities=10%  Similarity=0.010  Sum_probs=34.0

Q ss_pred             ccCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhH
Q psy16115        106 MFGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICA  145 (258)
Q Consensus       106 ~l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~  145 (258)
                      +|+||+|.|.|.+. ||+.+|+.+...|++|++..++.++.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~   42 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP   42 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH
Confidence            47999999999887 99999999999999977775555443

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.73  E-value=0.0066  Score=50.20  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        105 VMFGGKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       105 ~~l~g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+|+||+++|.|++   -||+.+|+.|...|++|++.++++.
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            45899999999986   4999999999999999999887654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.71  E-value=0.0057  Score=50.15  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.++++.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~   39 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            6899999999888 999999999999999999998743

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.70  E-value=0.0027  Score=52.15  Aligned_cols=33  Identities=30%  Similarity=0.183  Sum_probs=31.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      +|+|||+|+.|..+|..|+..|.+|+++|+++.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            699999999999999999999999999998764

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0061  Score=49.32  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      +..+|+|||.|.-|+.+|..|...|.+|++++.++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            45789999999999999999999999999998654

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=95.59  E-value=0.011  Score=48.56  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=60.0

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCC-cccCHHHHHHhCCeeeecc--CccccccHHHH
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGF-SVVKLNEVIRTVDIVVTAT--GNKNVVTREHM  183 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~-~~~~l~e~~~~aDvvi~~~--~~~~~i~~~~l  183 (258)
                      ..|++|++||+-+    ....++..|+++.++|++|..       |. ....-++++.+||+|+.+.  =..+.++ ..+
T Consensus       120 ~~g~kV~vIG~~P----~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTGsTlvN~Tl~-~LL  187 (251)
T d2h1qa1         120 VKGKKVGVVGHFP----HLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITCASVVDKTLP-RLL  187 (251)
T ss_dssp             TTTSEEEEESCCT----THHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEETHHHHHTCHH-HHH
T ss_pred             cCCCEEEEEecch----hHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEechhhcCCHH-HHH
Confidence            3799999999865    456677788999999998752       22 2334678889999998863  2335665 778


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                      +..|+...++-+|-.
T Consensus       188 ~~~~~a~~vvl~GPS  202 (251)
T d2h1qa1         188 ELSRNARRITLVGPG  202 (251)
T ss_dssp             HHTTTSSEEEEESTT
T ss_pred             HhCCcCCEEEEECCC
Confidence            888888888888866

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.58  E-value=0.0067  Score=48.75  Aligned_cols=33  Identities=21%  Similarity=0.399  Sum_probs=30.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPI  143 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~  143 (258)
                      +|+|||.|+.|..+|..|+..|. +|+++++++.
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            79999999999999999999996 8999998764

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.50  E-value=0.0049  Score=46.89  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      ++++|+|||.|.+|..+|..|+.+|.++.++.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence            578999999999999999999999987555433

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.004  Score=52.56  Aligned_cols=37  Identities=19%  Similarity=0.505  Sum_probs=34.4

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      |+||+++|.|.+. ||+.+|+.|...|++|++.|++..
T Consensus         5 l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           5 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            7899999999998 999999999999999999988754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.48  E-value=0.012  Score=48.08  Aligned_cols=39  Identities=10%  Similarity=0.141  Sum_probs=35.1

Q ss_pred             CCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        109 GKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       109 g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      ||.++|-|.+. ||+.+|+.|...|++|++++++++++++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~   41 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRT   41 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            78889999887 9999999999999999999999877654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.0035  Score=48.54  Aligned_cols=36  Identities=8%  Similarity=-0.018  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      ++++|+|||.|+.|...|..+..+|++|+++++.+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            567999999999999999999999999999986543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.46  E-value=0.0096  Score=43.80  Aligned_cols=46  Identities=15%  Similarity=0.397  Sum_probs=34.7

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCCCEEEE-EeCChhhHHHHHhCCCcccCHHHHHHhCCeeeecc
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLGCVIYI-TEIDPICALQACMDGFSVVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G~~Vi~-~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~  172 (258)
                      +|+|+|+ |+||+.+++.+...|.+++. +|.+...                .+..+|++|.-+
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~----------------~~~~~DVvIDFS   49 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVE----------------ELDSPDVVIDFS   49 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEE----------------ECSCCSEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHH----------------HhccCCEEEEec
Confidence            6999996 99999999999999998554 5654321                124578888876

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.066  Score=40.27  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=59.2

Q ss_pred             cCCCEEEEEcC---chHHHHHHHHHHhCCC-EEEEEeCChh-----hHHHHHhCCCc---ccCHHHHHHhCCeeeeccC-
Q psy16115        107 FGGKQVVLCGY---GEVGKGCCQSLKGLGC-VIYITEIDPI-----CALQACMDGFS---VVKLNEVIRTVDIVVTATG-  173 (258)
Q Consensus       107 l~g~~V~IiG~---G~IG~~~a~~l~~~G~-~Vi~~d~~~~-----~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~-  173 (258)
                      +.|.+|+++|=   |++..+.+..+..+|. .++++.+...     ....+...|..   ..++++.++++|+|..... 
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            57999999996   6699999999999975 5666643221     12234444543   3478899999999987521 


Q ss_pred             -------------ccccccHHHHhcCCCCcEEEecCC
Q psy16115        174 -------------NKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       174 -------------~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                                   ....++.+.++.+++++++..+..
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcLP  118 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLP  118 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCSC
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCCC
Confidence                         112334455556666666666543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.30  E-value=0.0067  Score=48.15  Aligned_cols=34  Identities=24%  Similarity=0.213  Sum_probs=29.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHh--CCCEEEEEeCChh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKG--LGCVIYITEIDPI  143 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~--~G~~Vi~~d~~~~  143 (258)
                      .+|+|||.|+-|..+|..|+.  +|++|+++|..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            489999999999999998864  5789999998754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.29  E-value=0.0045  Score=49.49  Aligned_cols=85  Identities=18%  Similarity=0.159  Sum_probs=58.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHh----CCCc---c--cCHHHHH---HhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACM----DGFS---V--VKLNEVI---RTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~----~g~~---~--~~l~e~~---~~aDvvi~~~~  173 (258)
                      +|++|+-+|+|. |...+..++..|  .+|+.+|+++...+.+++    .+..   .  .+..+..   ...|+|++...
T Consensus        75 ~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~  153 (213)
T d1dl5a1          75 KGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG  153 (213)
T ss_dssp             TTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             ccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence            799999999998 777666666555  479999999887665543    2222   1  1222211   13599888765


Q ss_pred             ccccccHHHHhcCCCCcEEEe
Q psy16115        174 NKNVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       174 ~~~~i~~~~l~~~k~g~~ivn  194 (258)
                      ..++. .+.++.+|+|+++|-
T Consensus       154 ~~~~p-~~l~~~LkpGG~lv~  173 (213)
T d1dl5a1         154 VDEVP-ETWFTQLKEGGRVIV  173 (213)
T ss_dssp             BSCCC-HHHHHHEEEEEEEEE
T ss_pred             HHHhH-HHHHHhcCCCcEEEE
Confidence            55555 478899999999875

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.18  E-value=0.012  Score=48.08  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEe-CChhh
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITE-IDPIC  144 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d-~~~~~  144 (258)
                      |.||+++|.|.+. ||+.+|+.|...|++|++.+ ++...
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~   43 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKA   43 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHH
Confidence            7999999999887 99999999999999988754 44443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.17  E-value=0.0097  Score=50.11  Aligned_cols=34  Identities=15%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPI  143 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~  143 (258)
                      |+|+|||+|+-|..+|..|+..|  .+|++++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            79999999999999999987765  48999988753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.15  E-value=0.0084  Score=46.38  Aligned_cols=32  Identities=16%  Similarity=0.041  Sum_probs=30.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|.|||.|..|..+|..|...|.+|+++|.++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            48999999999999999999999999999875

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.011  Score=46.34  Aligned_cols=31  Identities=16%  Similarity=0.118  Sum_probs=29.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      .|+|||.|+.|..+|..+..+|.+|.+++.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999999875

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.04  E-value=0.014  Score=46.97  Aligned_cols=37  Identities=14%  Similarity=0.262  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        108 GGKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       108 ~g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      .||+|+|.|.+. ||+.+|+.+...|++|+++|+++..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            489999999876 9999999999999999999887643

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.024  Score=48.00  Aligned_cols=86  Identities=21%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhC-----------C-----Ccc-------cCHHHHHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMD-----------G-----FSV-------VKLNEVIR  163 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~-----------g-----~~~-------~~l~e~~~  163 (258)
                      ++++|.=+|+|. |..+...++..|+ +++++|.++.....|.+.           |     ++.       ....+...
T Consensus       151 ~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~  229 (328)
T d1nw3a_         151 DDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  229 (328)
T ss_dssp             TTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence            689999999996 7777778888887 699999998765443221           1     111       12345566


Q ss_pred             hCCeeeeccC-----ccccccHHHHhcCCCCcEEEec
Q psy16115        164 TVDIVVTATG-----NKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       164 ~aDvvi~~~~-----~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                      ++|+|+...-     ....+ .+.++.||||+++|..
T Consensus       230 ~advi~~~~~~f~~~~~~~l-~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         230 NTSVIFVNNFAFGPEVDHQL-KERFANMKEGGRIVSS  265 (328)
T ss_dssp             HCSEEEECCTTTCHHHHHHH-HHHHTTCCTTCEEEES
T ss_pred             cceEEEEcceecchHHHHHH-HHHHHhCCCCcEEEEe
Confidence            7999987531     11234 3677889999999864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.014  Score=48.92  Aligned_cols=95  Identities=9%  Similarity=0.113  Sum_probs=67.1

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhCCC-----------EEEEEeCCh----hhH---HH----HHhCCCc--ccCHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGLGC-----------VIYITEIDP----ICA---LQ----ACMDGFS--VVKLN  159 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~G~-----------~Vi~~d~~~----~~~---~~----a~~~g~~--~~~l~  159 (258)
                      +..+...++++.|+|.-|..+++.+...+.           +++++|++-    .+.   ..    ......+  ..++.
T Consensus        20 gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~   99 (294)
T d1pj3a1          20 SKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFE   99 (294)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHH
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHH
Confidence            445788999999999999999988765532           399998742    110   00    0001111  23688


Q ss_pred             HHHH--hCCeeeeccCccccccHHHHhcC---CCCcEEEecCCC
Q psy16115        160 EVIR--TVDIVVTATGNKNVVTREHMDKM---KNGCVVCNMGHS  198 (258)
Q Consensus       160 e~~~--~aDvvi~~~~~~~~i~~~~l~~~---k~g~~ivnvg~~  198 (258)
                      ++++  +.|+++-+++..++++++.++.|   .+..+|.-.+.+
T Consensus       100 e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNP  143 (294)
T d1pj3a1         100 DAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNP  143 (294)
T ss_dssp             HHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             HHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCC
Confidence            8876  78999999988899998888654   588899888887

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.96  E-value=0.011  Score=47.91  Aligned_cols=32  Identities=19%  Similarity=0.142  Sum_probs=30.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|+|||.|.+|.++|..|...|.+|+++|+++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.96  E-value=0.031  Score=43.25  Aligned_cols=62  Identities=16%  Similarity=0.088  Sum_probs=43.6

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCE--EEEEeCChhhHHHHHhCCCc-----c---cCHHHHHHhCCeeeecc
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCV--IYITEIDPICALQACMDGFS-----V---VKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~--Vi~~d~~~~~~~~a~~~g~~-----~---~~l~e~~~~aDvvi~~~  172 (258)
                      +||+|.| .|.||+.+++.|...|.+  |+...|++.+.... ..+.+     .   .++.+.++++|.|+.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a   76 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILT   76 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-cCCcEEEEeeeccccccccccccceeeEEEE
Confidence            7999999 699999999999999965  55566777654321 22222     1   23456677899998763

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.92  E-value=0.02  Score=46.54  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=32.5

Q ss_pred             CEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHH
Q psy16115        110 KQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQ  147 (258)
Q Consensus       110 ~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~  147 (258)
                      |.++|.|.+. ||+.+|+.|...|++|++.|++++++++
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~   40 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKA   40 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence            3457779877 9999999999999999999999887654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=94.82  E-value=0.011  Score=47.09  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=30.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .|+|||.|+.|..+|..|...|.+|+++|+++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            489999999999999999999999999997653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.014  Score=44.34  Aligned_cols=31  Identities=16%  Similarity=0.168  Sum_probs=28.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      .|.|||.|++|...|..+..+|.+|+++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4899999999999999999999999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.80  E-value=0.01  Score=46.45  Aligned_cols=32  Identities=25%  Similarity=0.170  Sum_probs=29.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|+|||.|+.|..+|..+..+|.+|+++|..+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            58999999999999999999999999998753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.79  E-value=0.024  Score=42.28  Aligned_cols=38  Identities=18%  Similarity=0.086  Sum_probs=33.7

Q ss_pred             cCCCEEEEE--cCchHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        107 FGGKQVVLC--GYGEVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       107 l~g~~V~Ii--G~G~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      ..++.+.|+  |.|.||..+|..|..+|.+|+++++.+.-
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            478888888  88999999999999999999999987643

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.73  E-value=0.016  Score=47.20  Aligned_cols=42  Identities=21%  Similarity=0.289  Sum_probs=35.9

Q ss_pred             cCCCEEEEEcCch-HHHHHHHHHHh---CCCEEEEEeCChhhHHHH
Q psy16115        107 FGGKQVVLCGYGE-VGKGCCQSLKG---LGCVIYITEIDPICALQA  148 (258)
Q Consensus       107 l~g~~V~IiG~G~-IG~~~a~~l~~---~G~~Vi~~d~~~~~~~~a  148 (258)
                      |.||.++|-|.+. ||+.+|+.|..   .|++|++++|++.+++..
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~   49 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQL   49 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHH
Confidence            6899999999987 99999999864   689999999998876543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.70  E-value=0.013  Score=49.09  Aligned_cols=36  Identities=22%  Similarity=0.208  Sum_probs=31.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      ..-.|+|||+|..|..+|..|+..|.+|+++|..+.
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            345799999999999999999999999999987643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.69  E-value=0.0081  Score=48.71  Aligned_cols=35  Identities=23%  Similarity=0.463  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      |.+++|+|+|+|.+|..++..|...|. +++++|.+
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            688999999999999999999999998 69999865

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.64  E-value=0.011  Score=45.79  Aligned_cols=35  Identities=9%  Similarity=-0.045  Sum_probs=31.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      ..++|.|||.|+.|...|..+..+|.+++++|..+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            45799999999999999999999999999988543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.62  E-value=0.019  Score=40.97  Aligned_cols=35  Identities=11%  Similarity=0.118  Sum_probs=29.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHh---CCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKG---LGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~---~G~~Vi~~d~~~~  143 (258)
                      .++++|||.|.+|..+|..+..   .|.+|+++++.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            4899999999999999987654   4889999987654

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.037  Score=42.37  Aligned_cols=29  Identities=17%  Similarity=0.321  Sum_probs=24.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC-CEEEEEe
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG-CVIYITE  139 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d  139 (258)
                      +|||-|+|+|||.+.+.+.... .+|+.++
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaIN   32 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIN   32 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEe
Confidence            6999999999999999998774 5766665

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.58  E-value=0.0098  Score=46.93  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=29.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC-------CEEEEEeCChh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG-------CVIYITEIDPI  143 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G-------~~Vi~~d~~~~  143 (258)
                      .+|+|||.|+-|+.+|..|...|       ++|+++|..+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999998876       57999998753

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.57  E-value=0.0036  Score=48.09  Aligned_cols=64  Identities=17%  Similarity=0.290  Sum_probs=41.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCC-C-EEEEEeCChhhHHHHHhCCCcccCHHHHHHh--CCeeeeccCc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLG-C-VIYITEIDPICALQACMDGFSVVKLNEVIRT--VDIVVTATGN  174 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G-~-~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~--aDvvi~~~~~  174 (258)
                      -+|+|||+|.+|+..++.++... . .+.+++....+. .+...+....++++++..  .|+|++|+.+
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~   75 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-LGSLDEVRQISLEDALRSQEIDVAYICSES   75 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-CCEETTEEBCCHHHHHHCSSEEEEEECSCG
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHH-HHHhhccCcCCHHHHHhCCCcchhhhcccc
Confidence            38999999999999888887643 1 244444322221 122234456688999874  5889888643

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.50  E-value=0.06  Score=43.30  Aligned_cols=43  Identities=26%  Similarity=0.130  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCch-HHHHHHHHHHhCCC--EEEEEeCChhhHHHHHh
Q psy16115        108 GGKQVVLCGYGE-VGKGCCQSLKGLGC--VIYITEIDPICALQACM  150 (258)
Q Consensus       108 ~g~~V~IiG~G~-IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~  150 (258)
                      ..|+|+|.|.+. ||+.+|+.|...|+  +|+...|+.+++++..+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~   47 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH
Confidence            458999999888 99999999999996  68888999887765444

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.46  E-value=0.019  Score=45.03  Aligned_cols=32  Identities=25%  Similarity=0.203  Sum_probs=29.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|.|||.|+.|..+|..+...|.+|.++|..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            58999999999999999999999999998653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.46  E-value=0.017  Score=45.91  Aligned_cols=36  Identities=14%  Similarity=0.314  Sum_probs=32.1

Q ss_pred             CCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        109 GKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       109 g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      +|+++|.|.+. ||+.+|+.|...|++|++.|++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            47889999866 9999999999999999999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.016  Score=47.55  Aligned_cols=31  Identities=26%  Similarity=0.338  Sum_probs=28.8

Q ss_pred             EEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        112 VVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      |+|||.|..|..+|..|+..|.+|++++.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7999999999999999999999999998644

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.45  E-value=0.021  Score=43.02  Aligned_cols=64  Identities=13%  Similarity=0.287  Sum_probs=42.0

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCC-------EEEEEeCChhhHH-HHHh-----CCCc-------ccCHHHHHHhCCee
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGC-------VIYITEIDPICAL-QACM-----DGFS-------VVKLNEVIRTVDIV  168 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~-------~Vi~~d~~~~~~~-~a~~-----~g~~-------~~~l~e~~~~aDvv  168 (258)
                      .+|.|+|+ |.+|..++..|...+.       .+..+|.+..... ++..     ....       ..+..+.++++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            38999995 9999999998875332       3666777654321 1111     1111       12567889999999


Q ss_pred             eeccC
Q psy16115        169 VTATG  173 (258)
Q Consensus       169 i~~~~  173 (258)
                      +.+.|
T Consensus        84 Vitag   88 (154)
T d5mdha1          84 ILVGS   88 (154)
T ss_dssp             EECCS
T ss_pred             EEecc
Confidence            99854

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.37  E-value=0.051  Score=45.52  Aligned_cols=64  Identities=20%  Similarity=0.126  Sum_probs=46.1

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh-----C--CC---------cccCHHHHHHhCCeeee
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQACM-----D--GF---------SVVKLNEVIRTVDIVVT  170 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~-----~--g~---------~~~~l~e~~~~aDvvi~  170 (258)
                      +||+|+|.| .|-||..+++.|...|.+|++..|+..+......     .  ..         +..++++++.++|.++.
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            799999999 5669999999999999999998887655332111     0  00         11235566778898887


Q ss_pred             c
Q psy16115        171 A  171 (258)
Q Consensus       171 ~  171 (258)
                      +
T Consensus        90 ~   90 (342)
T d1y1pa1          90 I   90 (342)
T ss_dssp             C
T ss_pred             h
Confidence            5

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.0099  Score=43.25  Aligned_cols=76  Identities=17%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCch--HHH---------HHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccc
Q psy16115        108 GGKQVVLCGYGE--VGK---------GCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~G~--IG~---------~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      ..++|+|+|.|+  ||+         .+++.||..|.++++++.+|+....         +    ..-+|-+..-+=+..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVst---------d----~d~aD~lYfeplt~e   69 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVST---------D----YDTSDRLYFEPVTLE   69 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTT---------S----TTSSSEEECCCCSHH
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhc---------C----hhhcCceEEccCCHH
Confidence            358999999998  665         5678888999999999999875321         0    112455554443333


Q ss_pred             cccHHHHhcCCCCcEEEecCC
Q psy16115        177 VVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      .+. +.++.-+|.++++-+|.
T Consensus        70 ~v~-~Ii~~E~p~~ii~~~GG   89 (121)
T d1a9xa4          70 DVL-EIVRIEKPKGVIVQYGG   89 (121)
T ss_dssp             HHH-HHHHHHCCSEEECSSST
T ss_pred             HHH-HHHHHhCCCEEEeehhh
Confidence            332 44555566666665553

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.017  Score=48.03  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=30.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .++|||+|..|..+|..|...|.+|++++.++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            689999999999999999999999999987653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.20  E-value=0.025  Score=49.56  Aligned_cols=86  Identities=20%  Similarity=0.349  Sum_probs=61.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhC-----------CCc-----------c---cCHHHH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMD-----------GFS-----------V---VKLNEV  161 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~-----------g~~-----------~---~~l~e~  161 (258)
                      +|++++=+|+|. |..+.++++.+|+ +|+++|.++.....|.+.           +..           .   ...++.
T Consensus       216 pgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         216 KGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            789999999995 8888899988887 799999998765544321           100           0   124556


Q ss_pred             HHhCCeeeecc-----CccccccHHHHhcCCCCcEEEec
Q psy16115        162 IRTVDIVVTAT-----GNKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       162 ~~~aDvvi~~~-----~~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                      +..+|+++...     .....+. +.++.||||++||-.
T Consensus       295 ~~~adVV~inn~~f~~~l~~~L~-ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         295 IPQCDVILVNNFLFDEDLNKKVE-KILQTAKVGCKIISL  332 (406)
T ss_dssp             GGGCSEEEECCTTCCHHHHHHHH-HHHTTCCTTCEEEES
T ss_pred             cccceEEEEecccCchHHHHHHH-HHHHhcCCCcEEEEe
Confidence            67899998752     2233453 778899999999863

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.017  Score=46.10  Aligned_cols=67  Identities=13%  Similarity=0.183  Sum_probs=46.3

Q ss_pred             cCCCEEEEEc-CchHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCC-----cc---cCHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCG-YGEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGF-----SV---VKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG-~G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~-----~~---~~l~e~~~~aDvvi~~~~  173 (258)
                      +.+++|+|.| .|-||+.+++.|...|.  +|++++|++.....-.....     +.   .++.+.++++|+++.|.+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccc
Confidence            4789999999 78899999999988884  79999987654221111111     11   234455677999998754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.18  E-value=0.022  Score=45.05  Aligned_cols=32  Identities=25%  Similarity=0.206  Sum_probs=29.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|.|||.|+.|+..|..+..+|.+|.+++..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999998754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.17  E-value=0.017  Score=47.92  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.2

Q ss_pred             EEEEEcCchHHHHHHHHHH-----hCCCEEEEEeCChh
Q psy16115        111 QVVLCGYGEVGKGCCQSLK-----GLGCVIYITEIDPI  143 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~-----~~G~~Vi~~d~~~~  143 (258)
                      .|+|||.|+.|..+|..|.     ..|.+|+++|+.+.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            6999999999999999994     57999999998654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.15  E-value=0.025  Score=46.95  Aligned_cols=86  Identities=10%  Similarity=0.092  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCCc------ccCHHHHHHhCCeeeec-----c
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS------VVKLNEVIRTVDIVVTA-----T  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~~------~~~l~e~~~~aDvvi~~-----~  172 (258)
                      +|++|+=||+|. |......++..|++|+++|.++.....+.+    .|..      ..+..+.-...|.|+..     .
T Consensus        52 ~g~~VLDiGCG~-G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh~  130 (280)
T d2fk8a1          52 PGMTLLDIGCGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEHF  130 (280)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred             CCCEEEEecCCc-hHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHHh
Confidence            799999999997 545555667779999999999887654433    2321      11333333456888764     2


Q ss_pred             Ccc--ccccHHHHhcCCCCcEEEe
Q psy16115        173 GNK--NVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       173 ~~~--~~i~~~~l~~~k~g~~ivn  194 (258)
                      +.+  ..+-++.-+.||||++++-
T Consensus       131 ~~~~~~~~f~~i~~~LkpgG~~~i  154 (280)
T d2fk8a1         131 GHENYDDFFKRCFNIMPADGRMTV  154 (280)
T ss_dssp             CGGGHHHHHHHHHHHSCTTCEEEE
T ss_pred             hhhhHHHHHHHHHhccCCCceEEE
Confidence            222  1222356678999999864

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.15  E-value=0.025  Score=43.66  Aligned_cols=29  Identities=24%  Similarity=0.426  Sum_probs=22.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC----CEEEEEe
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG----CVIYITE  139 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G----~~Vi~~d  139 (258)
                      +|||-|+|+||+.+.+.+...+    .+|+..+
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaIN   35 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAIN   35 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEc
Confidence            7999999999999999886532    3555554

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.013  Score=43.01  Aligned_cols=75  Identities=20%  Similarity=0.352  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCch--HHH---------HHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccc
Q psy16115        108 GGKQVVLCGYGE--VGK---------GCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKN  176 (258)
Q Consensus       108 ~g~~V~IiG~G~--IG~---------~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~  176 (258)
                      .-++|+|+|.|+  ||+         .+++.||..|.+++.++.+|+....         +    ...+|-++.-+=+..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVst---------d----~d~aD~lYfePlt~e   72 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMT---------D----PEMADATYIEPIHWE   72 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGG---------C----GGGSSEEECSCCCHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhc---------C----hhhcceeeeecCCHH
Confidence            458999999998  665         5677888889999999999875321         1    123455555544444


Q ss_pred             cccHHHHhcCCCCcEEEecC
Q psy16115        177 VVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       177 ~i~~~~l~~~k~g~~ivnvg  196 (258)
                      .+. +.++.-+|.+++.-+|
T Consensus        73 ~v~-~Ii~~E~pd~il~~~G   91 (127)
T d1a9xa3          73 VVR-KIIEKERPDAVLPTMG   91 (127)
T ss_dssp             HHH-HHHHHHCCSEEECSSS
T ss_pred             HHH-HHHHHhCcCCeEEEee
Confidence            442 4555556666665444

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.11  E-value=0.049  Score=42.22  Aligned_cols=92  Identities=16%  Similarity=0.088  Sum_probs=62.1

Q ss_pred             cCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhh-----HHHH----HhCCCc---ccCHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPIC-----ALQA----CMDGFS---VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~~a----~~~g~~---~~~l~e~~~~aDvvi~~~  172 (258)
                      |.|.+|+++|=|  ++..+.+..+..+|+++.++.+....     ...+    ...|..   ..++++.++++|+|..-.
T Consensus         3 l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~   82 (185)
T d1dxha2           3 LHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV   82 (185)
T ss_dssp             GGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeeh
Confidence            578999999954  69999999999999999998653221     1111    122322   347899999999998842


Q ss_pred             ----C-------------ccccccHH-HHhcCCCCcEEEecCCC
Q psy16115        173 ----G-------------NKNVVTRE-HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ----~-------------~~~~i~~~-~l~~~k~g~~ivnvg~~  198 (258)
                          +             ....++.+ .....++++++..+...
T Consensus        83 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~LPa  126 (185)
T d1dxha2          83 WVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPA  126 (185)
T ss_dssp             CSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCC
T ss_pred             hhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCCch
Confidence                0             01123223 33456889999888753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.023  Score=44.30  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=29.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+.|||.|+.|..+|..+..+|.+|.++|..+
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            38899999999999999999999999998653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.06  E-value=0.017  Score=45.44  Aligned_cols=32  Identities=19%  Similarity=0.173  Sum_probs=29.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      ..+.|||.|+.|..+|..++.+|.+|.+++..
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899999999999999999999999999865

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=94.05  E-value=0.014  Score=47.97  Aligned_cols=106  Identities=17%  Similarity=0.154  Sum_probs=66.5

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCCc----ccCHHHHHH--hCCeeeeccCc--
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS----VVKLNEVIR--TVDIVVTATGN--  174 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~~----~~~l~e~~~--~aDvvi~~~~~--  174 (258)
                      .+|++|+=+|+|. |... ..+...|++|+++|.++...+.|++    .+..    ..+..+.+.  ..|+|+.+-..  
T Consensus       119 ~~g~~VLDiGcGs-G~l~-i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~~  196 (254)
T d2nxca1         119 RPGDKVLDLGTGS-GVLA-IAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CTTCEEEEETCTT-SHHH-HHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred             CccCEEEEcccch-hHHH-HHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcccccc
Confidence            4899999999997 6543 3555679999999999988765543    3432    124555443  46888765211  


Q ss_pred             -cccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCceee
Q psy16115        175 -KNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDLTWE  215 (258)
Q Consensus       175 -~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i~~~  215 (258)
                       ..++ .+..+.+|||++++-.|..  +.+...+.++...+.+.
T Consensus       197 l~~l~-~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~Gf~~~  239 (254)
T d2nxca1         197 HAALA-PRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPL  239 (254)
T ss_dssp             HHHHH-HHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEE
T ss_pred             HHHHH-HHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCCCEEE
Confidence             1222 2455678999999876544  33334445554444443

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.04  E-value=0.021  Score=45.94  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      ..|.|||.|+.|..+|..|...|.+|+++|..+..
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            46899999999999999999999999999987653

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=94.04  E-value=0.023  Score=47.78  Aligned_cols=96  Identities=17%  Similarity=0.256  Sum_probs=66.5

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhC----CC-------EEEEEeCChh----h-------HHHHHhCCCcccCHHHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGL----GC-------VIYITEIDPI----C-------ALQACMDGFSVVKLNEV  161 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~----G~-------~Vi~~d~~~~----~-------~~~a~~~g~~~~~l~e~  161 (258)
                      +..+...+++|+|+|.-|..+++.+...    |.       +++++|+.-.    |       ...+.. -....++.++
T Consensus        20 gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~-~~~~~~l~~~   98 (308)
T d1o0sa1          20 KKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKD-MPETTSILEV   98 (308)
T ss_dssp             CCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBS-SCCCCCHHHH
T ss_pred             CCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHh-cccCCcHHHH
Confidence            4457889999999999999988887644    32       3899986421    1       111100 0112357777


Q ss_pred             HHh--CCeeeeccCccccccHHHHhcCC---CCcEEEecCCCCh
Q psy16115        162 IRT--VDIVVTATGNKNVVTREHMDKMK---NGCVVCNMGHSNT  200 (258)
Q Consensus       162 ~~~--aDvvi~~~~~~~~i~~~~l~~~k---~g~~ivnvg~~~~  200 (258)
                      ++.  -++++-+++..++++++.++.|.   +..+|.=.+.+..
T Consensus        99 i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1          99 IRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             HHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             HhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCC
Confidence            775  47888898889999998887764   7889888888743

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.04  E-value=0.019  Score=41.26  Aligned_cols=97  Identities=16%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             CEEEEEcC----chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcc---ccccHH
Q psy16115        110 KQVVLCGY----GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNK---NVVTRE  181 (258)
Q Consensus       110 ~~V~IiG~----G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~---~~i~~~  181 (258)
                      |+|+|+|+    |..|..+.+.|+..|.+|+.+++....     -.|.. +.++.++-...|+++++....   ..+. +
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~-----i~G~~~y~sl~~lp~~~D~vvi~vp~~~~~~~l~-~   75 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE-----IEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAK-E   75 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGSCTTCCEEEECSCHHHHHHHHH-H
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc-----ccCccccccchhccccceEEEEEeCHHHHHHHHH-H
Confidence            68999995    568999999999999998888654332     13544 346777666789999986433   3443 3


Q ss_pred             HHhcCCCCcEEEecCCCChhhchhhhcCCCcee
Q psy16115        182 HMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTW  214 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~  214 (258)
                      ..+ +....+++..|..+ +...+.++...+.+
T Consensus        76 ~~~-~g~k~v~~~~g~~~-~~~~~~a~~~gi~v  106 (116)
T d1y81a1          76 AVE-AGFKKLWFQPGAES-EEIRRFLEKAGVEY  106 (116)
T ss_dssp             HHH-TTCCEEEECTTSCC-HHHHHHHHHHTCEE
T ss_pred             HHh-cCCceEEeccchhh-HHHHHHHHHcCCEE
Confidence            333 34446666655433 33444454444443

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.00  E-value=0.071  Score=42.67  Aligned_cols=64  Identities=17%  Similarity=0.159  Sum_probs=43.8

Q ss_pred             CCEEEEEcCch----HHHHHHHHHHhC--CCEEE-EEeCChhhHHH-HHhCCCc----ccCHHHHHHh--CCeeeecc
Q psy16115        109 GKQVVLCGYGE----VGKGCCQSLKGL--GCVIY-ITEIDPICALQ-ACMDGFS----VVKLNEVIRT--VDIVVTAT  172 (258)
Q Consensus       109 g~~V~IiG~G~----IG~~~a~~l~~~--G~~Vi-~~d~~~~~~~~-a~~~g~~----~~~l~e~~~~--aDvvi~~~  172 (258)
                      --+|||||+|.    +++.....++..  +.+++ ++|+++.+... +.+.+..    +.++++++..  .|+|++|+
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~t   93 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSV   93 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECS
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccC
Confidence            35899999987    555555566654  46755 68999877654 3444442    4588998864  67888874

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.99  E-value=0.033  Score=46.60  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             cCCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        107 FGGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       107 l~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      .+||+|+|.| .|-||..+++.|...|.+|++++++..+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            3899999999 6789999999999999999999987653

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.99  E-value=0.011  Score=47.31  Aligned_cols=85  Identities=15%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCCcc-----cCHHHH-H--HhCCeeeeccCcc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFSV-----VKLNEV-I--RTVDIVVTATGNK  175 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~~~-----~~l~e~-~--~~aDvvi~~~~~~  175 (258)
                      +|.+|+-||.|. |-..|.+++-.|.+|+.+|+++.-...+.+    .|..-     .+..+. .  ...|.|++..+..
T Consensus        78 ~g~~VLeIGsGs-GY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~~  156 (215)
T d1jg1a_          78 PGMNILEVGTGS-GWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAP  156 (215)
T ss_dssp             TTCCEEEECCTT-SHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred             ccceEEEecCCC-ChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeecccc
Confidence            799999999996 666666665557789999999876544432    34321     111111 1  2359888876555


Q ss_pred             ccccHHHHhcCCCCcEEEe
Q psy16115        176 NVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       176 ~~i~~~~l~~~k~g~~ivn  194 (258)
                      .+- ...++++|+|+++|-
T Consensus       157 ~ip-~~l~~qL~~gGrLv~  174 (215)
T d1jg1a_         157 KIP-EPLIEQLKIGGKLII  174 (215)
T ss_dssp             SCC-HHHHHTEEEEEEEEE
T ss_pred             cCC-HHHHHhcCCCCEEEE
Confidence            544 478999999999975

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.98  E-value=0.02  Score=47.01  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      +|+|||.|.+|.++|..|...|. +|+++|+++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            69999999999999999999997 599999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.98  E-value=0.026  Score=43.91  Aligned_cols=32  Identities=22%  Similarity=0.235  Sum_probs=29.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|.|||.|+.|..+|..+...|.+|.+++...
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            58999999999999999999999999998653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=93.95  E-value=0.027  Score=45.21  Aligned_cols=85  Identities=15%  Similarity=0.047  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhC--CC---cc--cCHHHH-HHh--CCeeeeccCcccc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMD--GF---SV--VKLNEV-IRT--VDIVVTATGNKNV  177 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~--g~---~~--~~l~e~-~~~--aDvvi~~~~~~~~  177 (258)
                      +|.+|+-||+|. |...+.++ ..+.+|+.+|+++.....|.+.  ..   ..  .+.... ...  .|.|++....+.+
T Consensus        70 ~g~~VLdIG~Gs-Gy~ta~La-~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~~i  147 (224)
T d1vbfa_          70 KGQKVLEIGTGI-GYYTALIA-EIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATAPTL  147 (224)
T ss_dssp             TTCEEEEECCTT-SHHHHHHH-HHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBBSSC
T ss_pred             ccceEEEecCCC-CHHHHHHH-HHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcchhhh
Confidence            799999999995 66655444 4567999999998876655432  11   11  121111 112  5988887666665


Q ss_pred             ccHHHHhcCCCCcEEEec
Q psy16115        178 VTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnv  195 (258)
                      . ...++++|+|+++|-.
T Consensus       148 p-~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         148 L-CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             C-HHHHHTEEEEEEEEEE
T ss_pred             h-HHHHHhcCCCCEEEEE
Confidence            5 4788999999998764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.92  E-value=0.029  Score=46.68  Aligned_cols=86  Identities=12%  Similarity=0.061  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCCc------ccCHHHHHHhCCeeeec-----c
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS------VVKLNEVIRTVDIVVTA-----T  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~~------~~~l~e~~~~aDvvi~~-----~  172 (258)
                      +|.+|+=||+|. |......++.+|++|++++.++...+.+.+    .|..      ..+..+.-...|.|+.-     .
T Consensus        62 ~G~~VLDiGCG~-G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh~  140 (285)
T d1kpga_          62 PGMTLLDVGCGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEHF  140 (285)
T ss_dssp             TTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGGT
T ss_pred             CCCEEEEecCcc-hHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhhc
Confidence            899999999997 666667788889999999999887654432    2221      12333332346766653     2


Q ss_pred             Ccc--ccccHHHHhcCCCCcEEEe
Q psy16115        173 GNK--NVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       173 ~~~--~~i~~~~l~~~k~g~~ivn  194 (258)
                      +..  ..+-++.-..||||++++-
T Consensus       141 ~~~~~~~~~~~~~r~LkpgG~~~l  164 (285)
T d1kpga_         141 GHERYDAFFSLAHRLLPADGVMLL  164 (285)
T ss_dssp             CTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred             CchhHHHHHHHHHhhcCCCCcEEE
Confidence            222  2222356678999998864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.91  E-value=0.024  Score=44.71  Aligned_cols=31  Identities=10%  Similarity=0.235  Sum_probs=28.8

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      .|.|||.|+.|...|..+..+|.+|.++|..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            5899999999999999999999999999854

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.90  E-value=0.023  Score=42.82  Aligned_cols=64  Identities=13%  Similarity=0.098  Sum_probs=39.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCC----E---EEEEeCChhh--HHHH-H--hCCC----c----ccCHHHHHHhCCee
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGC----V---IYITEIDPIC--ALQA-C--MDGF----S----VVKLNEVIRTVDIV  168 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~----~---Vi~~d~~~~~--~~~a-~--~~g~----~----~~~l~e~~~~aDvv  168 (258)
                      .+|.|+|+ |.||..++..+...+.    .   ...++.+...  .... .  ....    .    ..+..+.++++|+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            48999997 9999999999986542    1   2334333222  2111 1  1111    1    12467889999999


Q ss_pred             eeccC
Q psy16115        169 VTATG  173 (258)
Q Consensus       169 i~~~~  173 (258)
                      +.+.|
T Consensus        85 iitaG   89 (154)
T d1y7ta1          85 LLVGA   89 (154)
T ss_dssp             EECCC
T ss_pred             EeecC
Confidence            99853

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=93.82  E-value=0.089  Score=43.92  Aligned_cols=94  Identities=11%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CcccCCCEEEEEcCchHHHHHHHHHHhC----C------C-EEEEEeCCh----hh-------HHHHHhCCCcccCHHHH
Q psy16115        104 DVMFGGKQVVLCGYGEVGKGCCQSLKGL----G------C-VIYITEIDP----IC-------ALQACMDGFSVVKLNEV  161 (258)
Q Consensus       104 ~~~l~g~~V~IiG~G~IG~~~a~~l~~~----G------~-~Vi~~d~~~----~~-------~~~a~~~g~~~~~l~e~  161 (258)
                      +..|...+++|+|+|.-|..+++.+...    |      . +++++|+..    .|       ...+ .......+++++
T Consensus        20 gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a-~~~~~~~~l~~~   98 (298)
T d1gq2a1          20 KNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFA-HEHCEMKNLEDI   98 (298)
T ss_dssp             TSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGC-BSCCCCCCHHHH
T ss_pred             CCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHH-HHhhhhhhhHHH
Confidence            4567889999999999999988888643    3      2 589998742    11       0000 011123367777


Q ss_pred             HHh--CCeeeeccCccccccHHHHh---cCCCCcEEEecCCC
Q psy16115        162 IRT--VDIVVTATGNKNVVTREHMD---KMKNGCVVCNMGHS  198 (258)
Q Consensus       162 ~~~--aDvvi~~~~~~~~i~~~~l~---~~k~g~~ivnvg~~  198 (258)
                      ++.  .++++-+++..+.++++.++   .|.+..+|.=.+.+
T Consensus        99 i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNP  140 (298)
T d1gq2a1          99 VKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNP  140 (298)
T ss_dssp             HHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSS
T ss_pred             hhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCC
Confidence            764  78998998888999988777   44688899888877

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.82  E-value=0.03  Score=45.03  Aligned_cols=55  Identities=18%  Similarity=0.429  Sum_probs=40.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHH--hCCeeeecc
Q psy16115        111 QVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIR--TVDIVVTAT  172 (258)
Q Consensus       111 ~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~--~aDvvi~~~  172 (258)
                      +|+|.|. |-||+.+++.|+..|.+|+..|++....       .+...+++.++  +.|+|+-+.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~-------~d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDI-------TNVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT-------TCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccC-------CCHHHHHHHHHHcCCCEEEeec
Confidence            5899997 9999999999999999999998764211       01223455665  458887764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=93.78  E-value=0.026  Score=46.51  Aligned_cols=103  Identities=16%  Similarity=0.224  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHh----CCCc-c-----cCHHHHH--HhCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACM----DGFS-V-----VKLNEVI--RTVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~----~g~~-~-----~~l~e~~--~~aDvvi~~~~  173 (258)
                      +|++|+=+|+|. |...+..++..|  .+|+.+|.++...+.|++    .+.. .     .+..+..  ..+|.|+....
T Consensus       103 pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~p  181 (266)
T d1o54a_         103 EGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP  181 (266)
T ss_dssp             TTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred             CCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecCC
Confidence            899999999998 555555566554  589999999988766544    2321 1     1221111  23677877755


Q ss_pred             ccc-cccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCCCc
Q psy16115        174 NKN-VVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTPDL  212 (258)
Q Consensus       174 ~~~-~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~~i  212 (258)
                      .+. .+ ++..+.||||++++-....  ..+..+++|+....
T Consensus       182 ~p~~~l-~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF  222 (266)
T d1o54a_         182 DPWNYI-DKCWEALKGGGRFATVCPTTNQVQETLKKLQELPF  222 (266)
T ss_dssp             CGGGTH-HHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSE
T ss_pred             CHHHHH-HHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCc
Confidence            554 55 4888899999999865544  23344566665444

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.65  E-value=0.03  Score=45.34  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|+|||.|.+|.++|..|...|.+|+++|+..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999998753

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.63  E-value=0.091  Score=40.74  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=66.1

Q ss_pred             HHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhh
Q psy16115        123 GCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEI  202 (258)
Q Consensus       123 ~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~  202 (258)
                      .+.+.|+..|.+++.+.-...          ....+++.+.++|+++..+-....++++.++..++--.++..|.|-..+
T Consensus        58 glr~~Le~~GhelV~~sd~~~----------~~~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~V  127 (186)
T d2naca2          58 GLRKYLESNGHTLVVTSDKDG----------PDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHV  127 (186)
T ss_dssp             GCHHHHHHTTCEEEEESCCSS----------TTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTB
T ss_pred             hHHHHHHHCCCEEEEecCCCC----------ChHHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccc
Confidence            446789999999877643221          1224677788999999876445678889999998888999999996668


Q ss_pred             chhhhcCCCceeeeec
Q psy16115        203 DVNSLRTPDLTWEKVR  218 (258)
Q Consensus       203 ~~~~l~~~~i~~~~~~  218 (258)
                      ++++..++.|.+....
T Consensus       128 Dl~aa~e~gI~V~n~p  143 (186)
T d2naca2         128 DLQSAIDRNVTVAEVT  143 (186)
T ss_dssp             CHHHHHHTTCEEEECT
T ss_pred             cHHHHHhCCCEEEECC
Confidence            8888888889887664

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.61  E-value=0.031  Score=39.81  Aligned_cols=36  Identities=8%  Similarity=0.070  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC---CEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG---CVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G---~~Vi~~d~~~~  143 (258)
                      ..++++|+|.|.+|..+|..+..+|   .+|+++++.+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            3589999999999999998777665   46999987654

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=93.60  E-value=0.049  Score=41.90  Aligned_cols=29  Identities=14%  Similarity=0.320  Sum_probs=23.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhC-CCEEEEEe
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL-GCVIYITE  139 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d  139 (258)
                      +|||=|+|+||+.+.+.+... ..+++.++
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaIN   32 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVN   32 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEc
Confidence            789999999999999988765 35666654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.59  E-value=0.094  Score=42.30  Aligned_cols=62  Identities=23%  Similarity=0.343  Sum_probs=42.8

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhh-----HH---HHHhCCCcc-----c---CHHHHHHhCCeeeec
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPIC-----AL---QACMDGFSV-----V---KLNEVIRTVDIVVTA  171 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~---~a~~~g~~~-----~---~l~e~~~~aDvvi~~  171 (258)
                      +||+|+| .|.||+.+++.|...|.+|++..|++..     ..   .....+++.     .   .+.+.+.+++.++.+
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~   82 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   82 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence            5699999 5999999999999999999999876432     11   112233332     1   244556678888775

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.57  E-value=0.031  Score=44.65  Aligned_cols=36  Identities=14%  Similarity=0.204  Sum_probs=31.8

Q ss_pred             CCEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhh
Q psy16115        109 GKQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPIC  144 (258)
Q Consensus       109 g~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~  144 (258)
                      +.+|+|.|.+. ||+.+|+.|...|++|+++|+++..
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchh
Confidence            45789999877 9999999999999999999998654

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.53  E-value=0.026  Score=45.79  Aligned_cols=38  Identities=11%  Similarity=0.052  Sum_probs=33.3

Q ss_pred             EEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhHHHH
Q psy16115        111 QVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICALQA  148 (258)
Q Consensus       111 ~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a  148 (258)
                      |++|-|.+. ||+.+|+.|...|++|++.|++.+++++.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~   40 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL   40 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            788999888 99999999999999999999987776543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.041  Score=40.34  Aligned_cols=36  Identities=19%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHH----HhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSL----KGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l----~~~G~~Vi~~d~~~~  143 (258)
                      .+++++|||.|.+|..+|..+    +..|.+|+++++.+.
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            478999999999999888777    467999999987654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.31  E-value=0.044  Score=40.74  Aligned_cols=32  Identities=22%  Similarity=0.382  Sum_probs=27.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+|+|||.|.+|..+|..|+. +.+|+++++.+
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            379999999999999999975 67999987654

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.24  E-value=0.11  Score=39.62  Aligned_cols=29  Identities=14%  Similarity=0.323  Sum_probs=23.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhC-CCEEEEEe
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL-GCVIYITE  139 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~-G~~Vi~~d  139 (258)
                      +|||=|+|+||+.+.+.+... ..+|+.++
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~IN   31 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAIN   31 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEEC
Confidence            799999999999999999865 45766654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.06  E-value=0.069  Score=40.02  Aligned_cols=35  Identities=17%  Similarity=0.269  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCE-EEEEeCCh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCV-IYITEIDP  142 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~-Vi~~d~~~  142 (258)
                      .+++|+|||.|.+|.-+|..+..+|++ |+++.+.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            467899999999999999999999985 77775543

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=93.03  E-value=0.41  Score=36.46  Aligned_cols=92  Identities=12%  Similarity=0.089  Sum_probs=62.3

Q ss_pred             cCCCEEEEEcCc--hHHHHHHHHHHhCCCEEEEEeCChhh-----HH----HHHhCCCc---ccCHHHHHHhCCeeeecc
Q psy16115        107 FGGKQVVLCGYG--EVGKGCCQSLKGLGCVIYITEIDPIC-----AL----QACMDGFS---VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       107 l~g~~V~IiG~G--~IG~~~a~~l~~~G~~Vi~~d~~~~~-----~~----~a~~~g~~---~~~l~e~~~~aDvvi~~~  172 (258)
                      +.|.+|+++|=|  ++..+.+..+..+|+++.++.+....     ..    .+...|..   ..++++.++++|+|....
T Consensus         3 ~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~   82 (183)
T d1duvg2           3 FNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDV   82 (183)
T ss_dssp             GGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEe
Confidence            578999999966  59999999999999999988653221     11    12233433   347899999999998842


Q ss_pred             ----C--------------ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        173 ----G--------------NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       173 ----~--------------~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                          +              ....++.......+++++|...+..
T Consensus        83 w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~LPa  126 (183)
T d1duvg2          83 WVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPA  126 (183)
T ss_dssp             SSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             hhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccCcc
Confidence                0              1123333333456788888888754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.99  E-value=0.057  Score=43.18  Aligned_cols=89  Identities=11%  Similarity=0.118  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCch--HHHHHHHHHHhCCC----EEEEEeCChhhHHHHHhC------------CCcc--cCHHHH---HHh
Q psy16115        108 GGKQVVLCGYGE--VGKGCCQSLKGLGC----VIYITEIDPICALQACMD------------GFSV--VKLNEV---IRT  164 (258)
Q Consensus       108 ~g~~V~IiG~G~--IG~~~a~~l~~~G~----~Vi~~d~~~~~~~~a~~~------------g~~~--~~l~e~---~~~  164 (258)
                      +|++|+.||+|.  ....+++.+...|.    +|+.+|++++-...+.+.            .+..  .+..+.   -..
T Consensus        80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~~~  159 (223)
T d1r18a_          80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNAP  159 (223)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGCS
T ss_pred             CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccccc
Confidence            789999999886  55566777777664    799999988765444321            1111  111111   113


Q ss_pred             CCeeeeccCccccccHHHHhcCCCCcEEEe-cCC
Q psy16115        165 VDIVVTATGNKNVVTREHMDKMKNGCVVCN-MGH  197 (258)
Q Consensus       165 aDvvi~~~~~~~~i~~~~l~~~k~g~~ivn-vg~  197 (258)
                      .|.|++......+- ...++++|+|+++|- ++.
T Consensus       160 fD~Iiv~~a~~~~p-~~l~~~Lk~gG~lV~pvg~  192 (223)
T d1r18a_         160 YNAIHVGAAAPDTP-TELINQLASGGRLIVPVGP  192 (223)
T ss_dssp             EEEEEECSCBSSCC-HHHHHTEEEEEEEEEEESC
T ss_pred             eeeEEEEeechhch-HHHHHhcCCCcEEEEEEec
Confidence            58888866555444 478889999999875 443

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.98  E-value=0.19  Score=38.40  Aligned_cols=66  Identities=15%  Similarity=0.152  Sum_probs=43.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHh---CCC----EEEEEeCChhhHH-H--HH--hCCC--------cccCHHHHHHhCC
Q psy16115        108 GGKQVVLCGY-GEVGKGCCQSLKG---LGC----VIYITEIDPICAL-Q--AC--MDGF--------SVVKLNEVIRTVD  166 (258)
Q Consensus       108 ~g~~V~IiG~-G~IG~~~a~~l~~---~G~----~Vi~~d~~~~~~~-~--a~--~~g~--------~~~~l~e~~~~aD  166 (258)
                      +-.+|.|+|+ |.||..++..|..   ||.    .+..+|....... +  +.  ....        ...+..+.++++|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            4468999996 9999999998875   453    3555676654321 1  11  1111        1235788899999


Q ss_pred             eeeeccC
Q psy16115        167 IVVTATG  173 (258)
Q Consensus       167 vvi~~~~  173 (258)
                      +|+...+
T Consensus       103 vVvi~ag  109 (175)
T d7mdha1         103 WALLIGA  109 (175)
T ss_dssp             EEEECCC
T ss_pred             eEEEeec
Confidence            9999743

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=92.97  E-value=0.036  Score=44.53  Aligned_cols=35  Identities=17%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      -|+|+|+|+ |.||+.+++.|...|.+|++++|++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            478999996 89999999999999999999988654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.97  E-value=0.055  Score=43.23  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=30.0

Q ss_pred             CEEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        110 KQVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       110 ~~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      |.|+|.|.+. ||+.+|+.|...|++|++.|++..
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            5678889766 999999999999999999998754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=92.90  E-value=0.042  Score=41.54  Aligned_cols=41  Identities=17%  Similarity=0.197  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM  150 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~  150 (258)
                      +|++|+.+|+|. |+.+.. |...|.+|+++|.++.-...+++
T Consensus        20 ~~~rvLd~GCG~-G~~a~~-la~~G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          20 PGARVLVPLCGK-SQDMSW-LSGQGYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             TTCEEEETTTCC-SHHHHH-HHHHCCEEEEEEECHHHHHHHHH
T ss_pred             CCCEEEEecCcC-CHHHHH-HHHcCCceEeecccHHHHHHHHH
Confidence            799999999997 765554 44569999999999887766554

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.89  E-value=0.043  Score=38.43  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      +++||+|+|||.|.-|.-+|..+...+.+++...+.
T Consensus        29 ~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          29 LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            479999999999999999999998877776555443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=92.86  E-value=0.049  Score=44.33  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh-CCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG-LGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~-~G~~Vi~~d~~~~  143 (258)
                      ....|.|||+|+-|..+|..|.. .|.+|.++|..+.
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            56779999999999999998855 6999999998753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.86  E-value=0.04  Score=42.68  Aligned_cols=31  Identities=23%  Similarity=0.192  Sum_probs=28.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      .|.|||.|+-|...|..+..+|.+|.++|..
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            3899999999999999999999999999864

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=0.019  Score=46.13  Aligned_cols=87  Identities=15%  Similarity=0.158  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCC----cc--cCHHHHH--HhCCeeeecc---
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGF----SV--VKLNEVI--RTVDIVVTAT---  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~----~~--~~l~e~~--~~aDvvi~~~---  172 (258)
                      +|++|+=||+|. |.....+++..|++|+++|.++.-.+.+++    .|.    +.  .+..+..  ...|+|+..-   
T Consensus        33 pg~~VLDiGCG~-G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  111 (245)
T d1nkva_          33 PGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATW  111 (245)
T ss_dssp             TTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEEcCCC-CHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEehhh
Confidence            799999999997 555555667789999999999876554333    332    11  1333322  2368887642   


Q ss_pred             --CccccccHHHHhcCCCCcEEEec
Q psy16115        173 --GNKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       173 --~~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                        .....+-++..+.+|||++++-.
T Consensus       112 ~~~d~~~~l~~~~r~LkPGG~l~i~  136 (245)
T d1nkva_         112 IAGGFAGAEELLAQSLKPGGIMLIG  136 (245)
T ss_dssp             GTSSSHHHHHHHTTSEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHcCcCcEEEEE
Confidence              22222223567778999998653

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=92.84  E-value=0.018  Score=45.54  Aligned_cols=84  Identities=14%  Similarity=0.113  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc---ccCHHHH-H--HhCCeeeecc-------Cc
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS---VVKLNEV-I--RTVDIVVTAT-------GN  174 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~---~~~l~e~-~--~~aDvvi~~~-------~~  174 (258)
                      .+++|+=+|+|. |..+- .+...|.+|+++|.++.....|.+.+..   ..+.+++ .  ...|+|+...       ..
T Consensus        42 ~~~~vLDiGcG~-G~~~~-~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          42 NPCRVLDLGGGT-GKWSL-FLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             SCCEEEEETCTT-CHHHH-HHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             CCCEEEEECCCC-chhcc-cccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            678999999995 66555 4455799999999999887777664432   1122222 1  2458887642       12


Q ss_pred             cccccHHHHhcCCCCcEEEe
Q psy16115        175 KNVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       175 ~~~i~~~~l~~~k~g~~ivn  194 (258)
                      ..++ ++..+.+|||++++-
T Consensus       120 ~~~l-~~i~r~Lk~gG~~ii  138 (246)
T d2avna1         120 DKAF-SEIRRVLVPDGLLIA  138 (246)
T ss_dssp             HHHH-HHHHHHEEEEEEEEE
T ss_pred             HHHH-HHHHhhcCcCcEEEE
Confidence            2233 356678899998864

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.4  Score=39.90  Aligned_cols=91  Identities=18%  Similarity=0.183  Sum_probs=59.7

Q ss_pred             ccCCCEEEEEcC---chHHHHHHHHHHhCC-CEEEEEeCChh-----hHHHHHhCCCc---ccCHHHHHHhCCeeeeccC
Q psy16115        106 MFGGKQVVLCGY---GEVGKGCCQSLKGLG-CVIYITEIDPI-----CALQACMDGFS---VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       106 ~l~g~~V~IiG~---G~IG~~~a~~l~~~G-~~Vi~~d~~~~-----~~~~a~~~g~~---~~~l~e~~~~aDvvi~~~~  173 (258)
                      .+.|.+|+++|-   +++..+.+..+..+| +++.++.+...     -...+.+.+..   ..++++.++++|+|....-
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~  230 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV  230 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCC
T ss_pred             CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeeccc
Confidence            479999999997   778899999888885 67888754322     12233444433   3478899999999986421


Q ss_pred             --------------ccccccHHHHhcCCCCcEEEecC
Q psy16115        174 --------------NKNVVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       174 --------------~~~~i~~~~l~~~k~g~~ivnvg  196 (258)
                                    ....++.+.++.+++++++..+.
T Consensus       231 ~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcL  267 (310)
T d1tuga1         231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL  267 (310)
T ss_dssp             CGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCS
T ss_pred             chhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCC
Confidence                          11234445555556666665544

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.79  E-value=0.33  Score=35.45  Aligned_cols=48  Identities=17%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             EEEEEc-CchHHHHHHHHHHhC-CCEEEE-EeCChhhHHHHHhCCCcccCHHHHH-HhCCeeeecc
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGL-GCVIYI-TEIDPICALQACMDGFSVVKLNEVI-RTVDIVVTAT  172 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~-G~~Vi~-~d~~~~~~~~a~~~g~~~~~l~e~~-~~aDvvi~~~  172 (258)
                      +|+|+| .|+||+.+++.+... ++++.. +|+...              +.... ..+|++|.-+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~--------------~~~~~~~~~DvvIDFS   52 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP--------------LSLLTDGNTEVVIDFT   52 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC--------------THHHHTTTCSEEEECC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc--------------hhhhccccCCEEEEcc
Confidence            689999 599999999987654 677544 664321              11222 3689999876

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.053  Score=43.27  Aligned_cols=85  Identities=12%  Similarity=0.022  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHhC----CCc--------c--cCHHHH-H--HhCCee
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACMD----GFS--------V--VKLNEV-I--RTVDIV  168 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~----g~~--------~--~~l~e~-~--~~aDvv  168 (258)
                      +|++|+-||+|. |...+.+++..|  .+|+.+|+++.-.+.+.+.    +..        .  .+..+. .  ...|+|
T Consensus        76 ~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I  154 (224)
T d1i1na_          76 EGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  154 (224)
T ss_dssp             TTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhh
Confidence            789999999997 666555555443  5899999998766554321    110        0  011111 1  135898


Q ss_pred             eeccCccccccHHHHhcCCCCcEEEe
Q psy16115        169 VTATGNKNVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       169 i~~~~~~~~i~~~~l~~~k~g~~ivn  194 (258)
                      +++....++. ...++.||+|+++|-
T Consensus       155 ~~~~~~~~ip-~~l~~~LkpGG~LV~  179 (224)
T d1i1na_         155 HVGAAAPVVP-QALIDQLKPGGRLIL  179 (224)
T ss_dssp             EECSBBSSCC-HHHHHTEEEEEEEEE
T ss_pred             hhhcchhhcC-HHHHhhcCCCcEEEE
Confidence            8876666655 478999999999975

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.76  E-value=0.044  Score=44.98  Aligned_cols=32  Identities=28%  Similarity=0.457  Sum_probs=29.8

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|+|||.|..|..+|..|...|++|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            59999999999999999999999999998754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.46  E-value=0.06  Score=41.37  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=28.0

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC--CEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~  142 (258)
                      +|+|||.|.+|..+|..|+..+  .+|+++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            7999999999999999998875  4799998754

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.096  Score=39.01  Aligned_cols=89  Identities=15%  Similarity=0.067  Sum_probs=48.6

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhC---C-CEEEEEeCChhhHHH--HHhCCCccc--CHHHHHHhCCeeeeccCcccccc-
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGL---G-CVIYITEIDPICALQ--ACMDGFSVV--KLNEVIRTVDIVVTATGNKNVVT-  179 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~---G-~~Vi~~d~~~~~~~~--a~~~g~~~~--~l~e~~~~aDvvi~~~~~~~~i~-  179 (258)
                      |+|+|+|+ |.+|+.+.+.|...   - .++..+..+......  .........  .-.+.++++|++|.|++....-. 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~   81 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI   81 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence            58999996 99999999765432   2 356666544322100  000111111  12235788999999975443211 


Q ss_pred             HHHHhcCCCCcEEEecCCC
Q psy16115        180 REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+.....+.+++|.+..
T Consensus        82 ~~~~~~~g~~~~VID~Ss~  100 (146)
T d1t4ba1          82 YPKLRESGWQGYWIDAASS  100 (146)
T ss_dssp             HHHHHHTTCCCEEEECSST
T ss_pred             hHHHHhcCCCeecccCCcc
Confidence            1222222334678888876

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=92.29  E-value=0.34  Score=36.42  Aligned_cols=78  Identities=8%  Similarity=-0.010  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeecc---------------CccccccHHHH
Q psy16115        120 VGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTAT---------------GNKNVVTREHM  183 (258)
Q Consensus       120 IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~---------------~~~~~i~~~~l  183 (258)
                      +.++.+..+..+|+++.++.+...........++. ..++++.++++|+|+.-.               .....++ +.+
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~w~s~~~~~~~~~~~~~~~~~~~-~~l   99 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVG-DRQ   99 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBC-HHH
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeehhhhhcchhHHHHHHHhhhhhhh-HHH
Confidence            88999999999999999986654432222233444 347899999999998731               1112233 344


Q ss_pred             hcCCCCcEEEecCCC
Q psy16115        184 DKMKNGCVVCNMGHS  198 (258)
Q Consensus       184 ~~~k~g~~ivnvg~~  198 (258)
                      ..++++++|..++-.
T Consensus       100 ~~~~~dai~MHclPa  114 (161)
T d1js1x2         100 MAVTNNAYFMHCLPV  114 (161)
T ss_dssp             HTTSSSCEEECCSCC
T ss_pred             hhcCCceEEcCCCcc
Confidence            456677888877764

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.24  E-value=0.065  Score=43.14  Aligned_cols=30  Identities=13%  Similarity=0.225  Sum_probs=28.5

Q ss_pred             EEEEcCchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        112 VVLCGYGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       112 V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      +.|||.|+.|..+|..+..+|.+|.++|.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            789999999999999999999999999975

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.23  E-value=0.056  Score=41.37  Aligned_cols=29  Identities=21%  Similarity=0.496  Sum_probs=25.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEe
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITE  139 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d  139 (258)
                      +|||=|+|+||+.+.+.+...+.+|+.++
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~IN   30 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALIN   30 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence            69999999999999999988888866654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.13  Score=43.34  Aligned_cols=33  Identities=18%  Similarity=0.148  Sum_probs=28.8

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      |.|+|.| .|-||..+++.|...|.+|+++|+.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6788999 88899999999999999999999854

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.13  E-value=0.18  Score=39.92  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=31.6

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHHh--------------------CCC-EEEEEeCCh
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLKG--------------------LGC-VIYITEIDP  142 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~~--------------------~G~-~Vi~~d~~~  142 (258)
                      .++.|++|+|||.|.++.-+|+.|..                    .|+ +|.++.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            34689999999999999999999976                    577 588877654

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.05  E-value=0.12  Score=40.33  Aligned_cols=21  Identities=29%  Similarity=0.471  Sum_probs=18.5

Q ss_pred             EEEEEcCchHHHHHHHHHHhC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL  131 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~  131 (258)
                      +|||=|+|+||+.+.+.+...
T Consensus         4 kigINGFGRIGR~vlR~~~~~   24 (190)
T d1k3ta1           4 KVGINGFGRIGRMVFQALCED   24 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT
T ss_pred             EEEEECCChHHHHHHHHHHHc
Confidence            799999999999999987543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=92.04  E-value=0.025  Score=46.37  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCC----cc--cCHHHH-H--HhCCeeeecc--
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGF----SV--VKLNEV-I--RTVDIVVTAT--  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~----~~--~~l~e~-~--~~aDvvi~~~--  172 (258)
                      +|.+|+=||+|. |......++.+|++|+++|.++.....+.+    .|.    +.  .+..++ +  ...|+|+...  
T Consensus        67 ~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l  145 (282)
T d2o57a1          67 RQAKGLDLGAGY-GGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAF  145 (282)
T ss_dssp             TTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCG
T ss_pred             CCCEEEEeCCCC-cHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchh
Confidence            789999999996 665555666679999999999876554433    122    11  122222 1  2358887742  


Q ss_pred             ---CccccccHHHHhcCCCCcEEEec
Q psy16115        173 ---GNKNVVTREHMDKMKNGCVVCNM  195 (258)
Q Consensus       173 ---~~~~~i~~~~l~~~k~g~~ivnv  195 (258)
                         .....+-.+..+.||||++++-.
T Consensus       146 ~h~~d~~~~l~~~~~~LkpgG~l~~~  171 (282)
T d2o57a1         146 LHSPDKLKVFQECARVLKPRGVMAIT  171 (282)
T ss_dssp             GGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHhcCCCcEEEEE
Confidence               22222223667789999987654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=91.94  E-value=0.035  Score=45.32  Aligned_cols=101  Identities=22%  Similarity=0.203  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhC--CCEEEEEeCChhhHHHHHhC----C-C---c--ccCHHHHHH--hCCeeeeccC
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGL--GCVIYITEIDPICALQACMD----G-F---S--VVKLNEVIR--TVDIVVTATG  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~--G~~Vi~~d~~~~~~~~a~~~----g-~---~--~~~l~e~~~--~aDvvi~~~~  173 (258)
                      +|.+|+=+|+|. |......++..  +.+|+.+|+++...+.|++.    + .   +  ..++.+.+.  ..|.|++...
T Consensus        85 pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p  163 (250)
T d1yb2a1          85 PGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP  163 (250)
T ss_dssp             TTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred             CcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCC
Confidence            899999999998 44333444433  34899999999877665541    1 1   1  112333222  3688887644


Q ss_pred             cc-ccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcCC
Q psy16115        174 NK-NVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRTP  210 (258)
Q Consensus       174 ~~-~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~~  210 (258)
                      .+ ..+ .+..+.+|||++++-....  .....+++|+..
T Consensus       164 ~p~~~l-~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~  202 (250)
T d1yb2a1         164 DPWNHV-QKIASMMKPGSVATFYLPNFDQSEKTVLSLSAS  202 (250)
T ss_dssp             CGGGSH-HHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGG
T ss_pred             chHHHH-HHHHHhcCCCceEEEEeCCcChHHHHHHHHHHC
Confidence            44 455 4788899999999865433  233345566543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.75  E-value=0.052  Score=40.18  Aligned_cols=100  Identities=14%  Similarity=0.071  Sum_probs=64.4

Q ss_pred             CCCEEEEEcCc----hHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCcc---cccc
Q psy16115        108 GGKQVVLCGYG----EVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGNK---NVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~G----~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~~---~~i~  179 (258)
                      +-++|+|+|+.    ..|..+++.|+.+|.+|+.+++....     -.|.. +.++.++-...|+++.+....   .++.
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~-----i~G~~~~~sl~dlp~~iD~v~i~vp~~~~~~~~~   92 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE-----VLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVE   92 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE-----ETTEECBSSGGGCSSCCSEEEECSCHHHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc-----cCCCcccccccccCccceEEEEEeCHHHHHHHHH
Confidence            56899999965    59999999999999998888664322     23544 456777666789999985333   3443


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhchhhhcCCCceee
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWE  215 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~  215 (258)
                       +..+ ....++.+..|..+++.. +.++...+.+.
T Consensus        93 -e~~~-~g~k~v~~~~G~~~ee~~-~~a~~~gi~vi  125 (139)
T d2d59a1          93 -QAIK-KGAKVVWFQYNTYNREAS-KKADEAGLIIV  125 (139)
T ss_dssp             -HHHH-HTCSEEEECTTCCCHHHH-HHHHHTTCEEE
T ss_pred             -HHHH-hCCCEEEEeccccCHHHH-HHHHHCCCEEE
Confidence             3333 355567776665555433 33333334443

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=91.72  E-value=0.087  Score=44.00  Aligned_cols=64  Identities=8%  Similarity=0.183  Sum_probs=45.6

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChhhHHH---HHhCCCcc-----cC----HHHHHHhCCeeeec
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPICALQ---ACMDGFSV-----VK----LNEVIRTVDIVVTA  171 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~---a~~~g~~~-----~~----l~e~~~~aDvvi~~  171 (258)
                      +-|||+|+| .|.||..+++.|.+.|.+|++..|++.+...   ....+++.     .+    ++.++..+|.++..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~   78 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN   78 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEee
Confidence            358999999 5999999999999999999999887665321   11124332     12    34556678887775

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=91.72  E-value=0.22  Score=34.89  Aligned_cols=65  Identities=22%  Similarity=0.038  Sum_probs=46.6

Q ss_pred             CCCEEEEEcC----------chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccCc
Q psy16115        108 GGKQVVLCGY----------GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATGN  174 (258)
Q Consensus       108 ~g~~V~IiG~----------G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~~  174 (258)
                      ..++|||+|+          ..-...+++.|+..|++|.+||+.-....  ...+.. ..++++....+|+|+.....
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~   89 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYD   89 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCC
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCc
Confidence            4478999994          34568899999999999999998654321  112333 34799999999988765433

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.66  E-value=0.071  Score=44.13  Aligned_cols=32  Identities=28%  Similarity=0.503  Sum_probs=29.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|+|||.|..|..+|..|...|++|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            49999999999999999999999999998754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.56  E-value=0.08  Score=42.45  Aligned_cols=39  Identities=15%  Similarity=0.180  Sum_probs=32.8

Q ss_pred             CCEEEEEcCch-HHHHHHHHHH---hCCCEEEEEeCChhhHHH
Q psy16115        109 GKQVVLCGYGE-VGKGCCQSLK---GLGCVIYITEIDPICALQ  147 (258)
Q Consensus       109 g~~V~IiG~G~-IG~~~a~~l~---~~G~~Vi~~d~~~~~~~~  147 (258)
                      -|||+|.|.+. ||+.+|+.|.   ..|++|++++|++++++.
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~   44 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE   44 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            37999999877 9999999885   458899999999877543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.51  E-value=0.17  Score=42.33  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=31.9

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .+.+|+|.| .|-||..+++.|...|.+|+++|+...
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~   50 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKN   50 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCc
Confidence            678999999 788999999999999999999987543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.40  E-value=0.12  Score=42.32  Aligned_cols=33  Identities=15%  Similarity=0.114  Sum_probs=29.6

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      |+|+|.| .|-||+.+++.|...|.+|+++|+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            6899999 57799999999999999999999864

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.30  E-value=0.13  Score=42.55  Aligned_cols=86  Identities=9%  Similarity=0.026  Sum_probs=55.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHH----HhCCCc------ccCHHHHHHhCCeeeec-----c
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQA----CMDGFS------VVKLNEVIRTVDIVVTA-----T  172 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a----~~~g~~------~~~l~e~~~~aDvvi~~-----~  172 (258)
                      +|.+|+=||+|. |..+...++.+|++|++++.++.....+    .+.|..      ..+....-...|.|+..     .
T Consensus        61 ~G~~VLDiGCG~-G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH~  139 (291)
T d1kpia_          61 PGMTLLDIGCGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEHF  139 (291)
T ss_dssp             TTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGGT
T ss_pred             CCCEEEEecCcc-hHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHhc
Confidence            799999999997 5566667788899999999998865433    233432      11222222347877763     2


Q ss_pred             Ccc---------ccccHHHHhcCCCCcEEEe
Q psy16115        173 GNK---------NVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       173 ~~~---------~~i~~~~l~~~k~g~~ivn  194 (258)
                      +..         ..+-++.-+.||||++++.
T Consensus       140 ~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l  170 (291)
T d1kpia_         140 ADGAGDAGFERYDTFFKKFYNLTPDDGRMLL  170 (291)
T ss_dssp             TCCSSCCSTTHHHHHHHHHHHTSCTTCEEEE
T ss_pred             chhhhhhHHHHHHHHHHHHHHhCCCCCceEE
Confidence            211         1122355678899999874

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=91.13  E-value=0.099  Score=42.01  Aligned_cols=34  Identities=21%  Similarity=0.285  Sum_probs=30.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .-.+.|||.|+.|..+|..+..+|.+|.+++..+
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            3469999999999999999999999999998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.10  E-value=0.014  Score=45.82  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=22.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCE
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCV  134 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~  134 (258)
                      +|+|||+|.+|..+|..|...|.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC
Confidence            699999999999999999998864

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.90  E-value=0.047  Score=40.61  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=49.9

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCC---CEEEEEeCChhhHHHHHhCCC---cccC-HHHHHHhCCeeeeccCccccccHH
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLG---CVIYITEIDPICALQACMDGF---SVVK-LNEVIRTVDIVVTATGNKNVVTRE  181 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G---~~Vi~~d~~~~~~~~a~~~g~---~~~~-l~e~~~~aDvvi~~~~~~~~i~~~  181 (258)
                      -+|+|+|+ |-+|+.+.+.|...+   .++.....+...-.. .....   ...+ ..+...++|+++.|++....-. -
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~-i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~-~   80 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR-MGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRA-H   80 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE-EEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHH-H
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc-eeeccccchhccchhhhhccceEEEecCCcchhhh-h
Confidence            47999996 889999999996433   356554332211100 00000   1111 1233567999999874433221 2


Q ss_pred             HHhcCCCCcEEEecCCC
Q psy16115        182 HMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       182 ~l~~~k~g~~ivnvg~~  198 (258)
                      .-+..++|.++||.+..
T Consensus        81 ~~~~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          81 AERARAAGCSVIDLSGA   97 (144)
T ss_dssp             HHHHHHTTCEEEETTCT
T ss_pred             ccccccCCceEEeechh
Confidence            22335788999998875

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=90.88  E-value=0.15  Score=37.35  Aligned_cols=101  Identities=16%  Similarity=0.157  Sum_probs=65.2

Q ss_pred             CCCEEEEEcC----chHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccC---cccccc
Q psy16115        108 GGKQVVLCGY----GEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATG---NKNVVT  179 (258)
Q Consensus       108 ~g~~V~IiG~----G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~---~~~~i~  179 (258)
                      .-|+|+|||+    +..|..+++.|+..|.++..+..++...   .-.|.. +.++.++-...|+++.+..   ...++.
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~---~i~g~~~~~~l~~i~~~iD~v~v~~p~~~v~~~v~   88 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE---ELFGEEAVASLLDLKEPVDILDVFRPPSALMDHLP   88 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS---EETTEECBSSGGGCCSCCSEEEECSCHHHHTTTHH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccc---eeeceecccchhhccCCCceEEEeccHHHHHHHHH
Confidence            4689999996    5699999999999999999987654311   113443 3466666566899999853   334554


Q ss_pred             HHHHhcCCCCcEEEecCCCChhhchhhhcCCCcee
Q psy16115        180 REHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTW  214 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~  214 (258)
                       +..+ +...++++..|..++++. +..+...+.+
T Consensus        89 -~~~~-~g~k~i~~q~G~~~~e~~-~~a~~~Gi~v  120 (136)
T d1iuka_          89 -EVLA-LRPGLVWLQSGIRHPEFE-KALKEAGIPV  120 (136)
T ss_dssp             -HHHH-HCCSCEEECTTCCCHHHH-HHHHHTTCCE
T ss_pred             -HHHh-hCCCeEEEecCccCHHHH-HHHHHcCCEE
Confidence             4444 355677777776555443 3333333443

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.87  E-value=0.36  Score=36.32  Aligned_cols=86  Identities=16%  Similarity=0.191  Sum_probs=47.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhC--CC--EEEEE-eCChh-------------hHHHHHh-CCCcccCHHHH---HH---hC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL--GC--VIYIT-EIDPI-------------CALQACM-DGFSVVKLNEV---IR---TV  165 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~--G~--~Vi~~-d~~~~-------------~~~~a~~-~g~~~~~l~e~---~~---~a  165 (258)
                      +|+++|+|.||+.+++.+...  +.  +|.+. |.+..             ....... ........+.+   ..   ..
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKP   85 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSSC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccccccHHHHHHHhccCCCc
Confidence            689999999999999998754  33  33332 21110             0011111 11122222222   22   24


Q ss_pred             CeeeeccCccccccHHHHhcCCCCcEEEecCC
Q psy16115        166 DIVVTATGNKNVVTREHMDKMKNGCVVCNMGH  197 (258)
Q Consensus       166 Dvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~  197 (258)
                      |+++.|++.....+ ...+.++.|.-+|-.--
T Consensus        86 ~vivd~t~~~~~~~-~~~~aL~~G~hVVTANK  116 (168)
T d1ebfa1          86 VILVDNTSSAYIAG-FYTKFVENGISIATPNK  116 (168)
T ss_dssp             EEEEECSCCHHHHT-THHHHHHTTCEEECCCC
T ss_pred             eEEEEecCChHHHH-HHHHHHHcCCeEEecCc
Confidence            67778877666553 44556788877776543

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.86  E-value=0.034  Score=42.23  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=22.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCE
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCV  134 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~  134 (258)
                      .+|+|||.|.+|..+|..|+.+|.+
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~   28 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQ   28 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCc
Confidence            4599999999999999999999975

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.60  E-value=0.1  Score=44.80  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=30.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHh------CCCEEEEEeCChh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKG------LGCVIYITEIDPI  143 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~------~G~~Vi~~d~~~~  143 (258)
                      =.|+|||.|+-|...|..|+.      .|.+|+++|+..+
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            479999999999999998875      7999999998654

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.56  E-value=0.58  Score=35.64  Aligned_cols=85  Identities=15%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             EEEEEc-CchHHHHHHHHHHhCC-CEEEEEeCCh--hh-HHHHHh--CC---CcccCHHHHHHhCCeeeeccCccccccH
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDP--IC-ALQACM--DG---FSVVKLNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~G-~~Vi~~d~~~--~~-~~~a~~--~g---~~~~~l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      +|+|+| .|-+|+.+.+.|...- .++...-.+.  -+ ......  .+   ....+.++..+++|+++.|+.....  .
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s--~   80 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS--Y   80 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH--H
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH--H
Confidence            799999 5779999999998764 4555542221  11 111100  11   1234667777889999999755432  2


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      +..... .+.++||.|..
T Consensus        81 ~~~~~~-~~~~VIDlSad   97 (176)
T d1vkna1          81 DLVREL-KGVKIIDLGAD   97 (176)
T ss_dssp             HHHTTC-CSCEEEESSST
T ss_pred             HHHHhh-ccceEEecCcc
Confidence            333333 57899999876

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.49  E-value=0.056  Score=47.49  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      |.+.+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            578899999999999999999999998 69999865

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.073  Score=39.54  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=26.6

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEE
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVI  135 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~V  135 (258)
                      ..|++|+|||.|.+|..+|..+...|+++
T Consensus        27 ~~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          27 PVGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             ccCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            37999999999999999999999999863

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=90.44  E-value=0.11  Score=42.94  Aligned_cols=32  Identities=16%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|+|||.|.-|...|..|...|++|++++..+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            49999999999999999999999999998754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.36  E-value=0.15  Score=40.61  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=30.1

Q ss_pred             EEEEEcCch-HHHHHHHHHHhCCCEEEEEeCChhhH
Q psy16115        111 QVVLCGYGE-VGKGCCQSLKGLGCVIYITEIDPICA  145 (258)
Q Consensus       111 ~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~~~  145 (258)
                      +++|-|.+. ||+.+|+.|...|++|++.+++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            467788777 99999999999999999999886543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.34  E-value=0.18  Score=39.61  Aligned_cols=25  Identities=24%  Similarity=0.351  Sum_probs=22.3

Q ss_pred             cccCCCEEEEEcCchHHHHHHHHHH
Q psy16115        105 VMFGGKQVVLCGYGEVGKGCCQSLK  129 (258)
Q Consensus       105 ~~l~g~~V~IiG~G~IG~~~a~~l~  129 (258)
                      .++.|++|+|||.|.++.-+|+.+.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             ccccCceEEEECCCchhHhhhhhhc
Confidence            3468999999999999999999886

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.33  E-value=0.096  Score=43.33  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      -.|+|||.|..|...|..+...|++|++++..+
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            469999999999999999999999999998754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.19  E-value=0.099  Score=40.39  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=39.4

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhCCC--EEEEEeCChhhHHHHHhCCCcccCHHHHHH----hCCeeeecc
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGLGC--VIYITEIDPICALQACMDGFSVVKLNEVIR----TVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~G~--~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~----~aDvvi~~~  172 (258)
                      |+|+|.|+ |.||+.+++.|...|.  +|+...|++.....  .......++.+...    ..|.|+.|.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~--~~~~~~~d~~~~~~~~~~~~d~vi~~~   70 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHP--RLDNPVGPLAELLPQLDGSIDTAFCCL   70 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCT--TEECCBSCHHHHGGGCCSCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcc--cccccccchhhhhhccccchheeeeee
Confidence            89999997 9999999999999996  66666655432100  00111234444433    368888874

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.2  Score=35.92  Aligned_cols=36  Identities=11%  Similarity=0.186  Sum_probs=32.6

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+||+|+|+|.|..+...|..|..+.-+|+++.+.+
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            489999999999999999999999988999986654

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.89  E-value=0.07  Score=44.13  Aligned_cols=36  Identities=17%  Similarity=0.210  Sum_probs=31.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHh--CCCEEEEEeCChh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKG--LGCVIYITEIDPI  143 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~--~G~~Vi~~d~~~~  143 (258)
                      .+..|+|||.|+-|..+|..|+.  .|.+|+++|.++.
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            46679999999999999999974  5899999988654

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.82  E-value=0.2  Score=38.24  Aligned_cols=29  Identities=14%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhC---CCEEEEEe
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGL---GCVIYITE  139 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~---G~~Vi~~d  139 (258)
                      +|||=|+|+||+.+.+.+...   +.+|+.++
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaIN   33 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAIN   33 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEec
Confidence            799999999999999988642   45766653

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.67  E-value=0.17  Score=39.20  Aligned_cols=35  Identities=17%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      +++||+|+|||.|.-|.-+|..+...+++++..-+
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            47999999999999999999999888887655533

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.66  E-value=0.18  Score=42.60  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             CCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        109 GKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       109 g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      |++|+|.| .|-||..+++.|...|.+|+++|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn   33 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDN   33 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence            78999999 577999999999999999999983

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.61  E-value=0.18  Score=40.31  Aligned_cols=38  Identities=11%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CE-EEEEcCch-HHHHHHHHHHhCCCE-------EEEEeCChhhHHH
Q psy16115        110 KQ-VVLCGYGE-VGKGCCQSLKGLGCV-------IYITEIDPICALQ  147 (258)
Q Consensus       110 ~~-V~IiG~G~-IG~~~a~~l~~~G~~-------Vi~~d~~~~~~~~  147 (258)
                      |+ |+|.|.+. ||+.+|+.|...|++       |+.+++++.++++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~   47 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEK   47 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHH
Confidence            45 46779877 999999999999987       8899999877654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.52  E-value=0.29  Score=37.17  Aligned_cols=88  Identities=19%  Similarity=0.211  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCCc----c--cCHHHHH---HhCCeeeeccC-
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS----V--VKLNEVI---RTVDIVVTATG-  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~~----~--~~l~e~~---~~aDvvi~~~~-  173 (258)
                      +|++|+=+|+|. |......++ .+.+|+.+|.++.....+++    .|..    .  .+..+..   ...|.|+.... 
T Consensus        33 ~g~~VLDiGcGs-G~~s~~lA~-~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~  110 (186)
T d1l3ia_          33 KNDVAVDVGCGT-GGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (186)
T ss_dssp             TTCEEEEESCTT-SHHHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCEEEEEECCe-Ecccccccc-cceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc
Confidence            789999999987 322223333 35699999999987665543    3431    1  2444443   34688877532 


Q ss_pred             --ccccccHHHHhcCCCCcEEEecCCC
Q psy16115        174 --NKNVVTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       174 --~~~~i~~~~l~~~k~g~~ivnvg~~  198 (258)
                        ...++ ....+.+|+|++++-....
T Consensus       111 ~~~~~~~-~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_         111 GELQEIL-RIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             TCHHHHH-HHHHHTEEEEEEEEEEECB
T ss_pred             ccchHHH-HHHHHHhCcCCEEEEEeec
Confidence              22334 3566788999988755443

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.37  E-value=0.19  Score=38.39  Aligned_cols=28  Identities=18%  Similarity=0.478  Sum_probs=22.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC---CEEEEE
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG---CVIYIT  138 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G---~~Vi~~  138 (258)
                      +|||-|+|+||+.+.+.+....   .+|+.+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaI   32 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVI   32 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEE
Confidence            7999999999999999876543   455554

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.05  Score=41.39  Aligned_cols=63  Identities=24%  Similarity=0.315  Sum_probs=40.1

Q ss_pred             CEEEEEcC-chHHHHHHHHHHhC-CCEEE-EEeCChhhHH--HH------HhCCCc-ccCHHHHHHhCCeeeecc
Q psy16115        110 KQVVLCGY-GEVGKGCCQSLKGL-GCVIY-ITEIDPICAL--QA------CMDGFS-VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~-G~IG~~~a~~l~~~-G~~Vi-~~d~~~~~~~--~a------~~~g~~-~~~l~e~~~~aDvvi~~~  172 (258)
                      -+|+|.|+ |+||+.+++.+... +++++ ++|+......  ..      ...+.. ..++++....+|+++.-+
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs   79 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT   79 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec
Confidence            47999996 99999999998775 67744 4555332110  00      001111 235667777899999976

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=89.33  E-value=0.12  Score=37.24  Aligned_cols=62  Identities=13%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHh-CCCEEE-EEeCChhhHHHHHhCCCcccC---HHHHHH-hCCeeeecc
Q psy16115        110 KQVVLCGYGEVGKGCCQSLKG-LGCVIY-ITEIDPICALQACMDGFSVVK---LNEVIR-TVDIVVTAT  172 (258)
Q Consensus       110 ~~V~IiG~G~IG~~~a~~l~~-~G~~Vi-~~d~~~~~~~~a~~~g~~~~~---l~e~~~-~aDvvi~~~  172 (258)
                      .+|+|+|+|..|+.+++.++. .|.+++ ++|-++.+.- ..-.|.....   +++..+ ..++++.+.
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G-~~I~Gi~V~~~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG-RPVRGGVIEHVDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT-CEETTEEEEEGGGHHHHSTTTCCEEEECS
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC-CEECCEEEecHHHHHHHHhhcccEEEEeC
Confidence            379999999999999987753 466744 4787775421 1112444333   333332 356666653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.04  E-value=0.055  Score=40.57  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=52.3

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHhCCC---EEEEEeCChhhHHHHHhCCCc----ccCHHHHHHhCCeeeeccCccccccH
Q psy16115        109 GKQVVLCGY-GEVGKGCCQSLKGLGC---VIYITEIDPICALQACMDGFS----VVKLNEVIRTVDIVVTATGNKNVVTR  180 (258)
Q Consensus       109 g~~V~IiG~-G~IG~~~a~~l~~~G~---~Vi~~d~~~~~~~~a~~~g~~----~~~l~e~~~~aDvvi~~~~~~~~i~~  180 (258)
                      |=+|+|+|+ |-+|+.+.+.|.....   ++.....+.... +.......    ....++...+.|+++.+.+...... 
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~-   78 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG-KSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAK-   78 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT-CEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHH-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc-ccccccCCcccccccchhhhhhhhhhhhccCccchhh-
Confidence            347999997 8899999999987653   344443221110 00000000    1123444567899999875443332 


Q ss_pred             HHHhcCCCCcEEEecCCC
Q psy16115        181 EHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       181 ~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+..++|..+||.|..
T Consensus        79 ~~~~~~~~~~~VIDlSsd   96 (154)
T d2gz1a1          79 YAPYAVKAGVVVVDNTSY   96 (154)
T ss_dssp             HHHHHHHTTCEEEECSST
T ss_pred             HHhhhccccceehhcChh
Confidence            334456789999998865

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=88.77  E-value=0.21  Score=38.09  Aligned_cols=29  Identities=21%  Similarity=0.350  Sum_probs=23.7

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC-CEEEEEe
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG-CVIYITE  139 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G-~~Vi~~d  139 (258)
                      +|||-|+|+||+.+.+.+.... .+++.++
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaIN   32 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   32 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEec
Confidence            7999999999999999887654 5766653

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=88.39  E-value=0.29  Score=38.82  Aligned_cols=35  Identities=9%  Similarity=0.135  Sum_probs=28.6

Q ss_pred             ccCCCEEEEEc-----------------CchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        106 MFGGKQVVLCG-----------------YGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       106 ~l~g~~V~IiG-----------------~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      +|+|++|+|.+                 -|.+|..+|+.+..+|++|+++.-
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g   54 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSG   54 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhc
Confidence            35677777665                 689999999999999999888743

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.25  E-value=0.31  Score=39.96  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=28.5

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      |+|+|.| .|-||+.+++.|...|.+|+++|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            7899999 5679999999999999999999863

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.16  E-value=0.26  Score=40.60  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=28.6

Q ss_pred             CEE-EEEc-CchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        110 KQV-VLCG-YGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       110 ~~V-~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      |+| +|.| .|-||..+++.|...|.+|+++|+.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            567 7888 56799999999999999999999864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.63  E-value=0.33  Score=39.69  Aligned_cols=32  Identities=22%  Similarity=0.163  Sum_probs=28.9

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      |+++|.| .|-||+.+++.|...|.+|+++|+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            6888888 6779999999999999999999974

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.54  E-value=0.34  Score=39.99  Aligned_cols=33  Identities=18%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             CCCEEEEEc-CchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        108 GGKQVVLCG-YGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       108 ~g~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      .-|+++|.| .|-||+.+++.|...|.+|+++|+
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            458999988 677999999999999999999986

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.27  E-value=0.39  Score=34.35  Aligned_cols=36  Identities=31%  Similarity=0.496  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+||+|+|+|.|.-+..-|..|..+..+|+++-+.+
T Consensus        28 ~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          28 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             cCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            589999999999999999999999977898886543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=87.11  E-value=0.11  Score=40.51  Aligned_cols=84  Identities=15%  Similarity=0.130  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh----CCCc---c--cCHHHH---HHhCCeeeeccC--
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM----DGFS---V--VKLNEV---IRTVDIVVTATG--  173 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~----~g~~---~--~~l~e~---~~~aDvvi~~~~--  173 (258)
                      ++++|+=||+|. |..... +...|.+|+++|.++.-...|++    .+..   +  .+.+++   -...|+|+..-.  
T Consensus        15 ~~~rVLDiGcG~-G~~~~~-l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~   92 (231)
T d1vl5a_          15 GNEEVLDVATGG-GHVANA-FAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH   92 (231)
T ss_dssp             SCCEEEEETCTT-CHHHHH-HGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CcCEEEEecccC-cHHHHH-HHHhCCEEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccc
Confidence            679999999994 655444 44568899999999876544432    2321   1  122221   124688877521  


Q ss_pred             ---cc-ccccHHHHhcCCCCcEEEe
Q psy16115        174 ---NK-NVVTREHMDKMKNGCVVCN  194 (258)
Q Consensus       174 ---~~-~~i~~~~l~~~k~g~~ivn  194 (258)
                         .+ .++ ++..+.||||++++-
T Consensus        93 ~~~d~~~~l-~~~~r~LkpgG~l~i  116 (231)
T d1vl5a_          93 HFPNPASFV-SEAYRVLKKGGQLLL  116 (231)
T ss_dssp             GCSCHHHHH-HHHHHHEEEEEEEEE
T ss_pred             ccCCHHHHH-HHHHHhcCCCcEEEE
Confidence               22 234 367788999998764

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.84  E-value=0.015  Score=42.64  Aligned_cols=33  Identities=18%  Similarity=-0.125  Sum_probs=28.7

Q ss_pred             CCCceEECChhhhHHHHhcccCccccccccCCH
Q psy16115         46 YKSDVYLLPKKMDEYVASLHLPTFDAHLTELSD   78 (258)
Q Consensus        46 ~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~~   78 (258)
                      .++.|+++|+..+.+|||+++.+++...|++..
T Consensus        86 ~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~  118 (130)
T d1ygya2          86 RGVLVVNAPTSASTAEAQDRAGTDVAESVRLAL  118 (130)
T ss_dssp             TTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEecCCCCcHHHHHHHHHHHHHHHhhHHH
Confidence            389999999999999999999988887777643

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=86.82  E-value=0.33  Score=38.93  Aligned_cols=31  Identities=13%  Similarity=0.326  Sum_probs=25.0

Q ss_pred             EEEcCch-HHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        113 VLCGYGE-VGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       113 ~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      +|.|.+. ||+.+|+.|...|++|++.+++..
T Consensus         6 lITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   37 (284)
T d1e7wa_           6 LVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   37 (284)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence            4447765 999999999999999988766543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.66  E-value=0.24  Score=38.83  Aligned_cols=41  Identities=15%  Similarity=0.102  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM  150 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~  150 (258)
                      .|.+|+.+|||. |+. +..|...|++|+++|.++...+.+++
T Consensus        45 ~~~rvLd~GCG~-G~~-a~~LA~~G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          45 SGLRVFFPLCGK-AVE-MKWFADRGHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CSCEEEETTCTT-CTH-HHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CCCEEEEeCCCC-cHH-HHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            788999999998 665 44555689999999999987665543

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.65  E-value=0.033  Score=40.70  Aligned_cols=33  Identities=12%  Similarity=0.156  Sum_probs=27.8

Q ss_pred             CCCCceEECChhhhHHHHhcccCccccccccCC
Q psy16115         45 RYKSDVYLLPKKMDEYVASLHLPTFDAHLTELS   77 (258)
Q Consensus        45 ~~~~~V~~lP~~~~~~vA~l~i~~~~~~~~~~~   77 (258)
                      ++++.|.++|++.+.+|||+++.+++...|++.
T Consensus        89 ~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~  121 (131)
T d1dxya2          89 QYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLT  121 (131)
T ss_dssp             HTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCchhHHHHHHHHHHHHHcchH
Confidence            348999999999999999999988876666553

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=86.59  E-value=0.32  Score=38.72  Aligned_cols=35  Identities=17%  Similarity=0.161  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCch-HHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        108 GGKQVVLCGYGE-VGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       108 ~g~~V~IiG~G~-IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      ++.+++|.|.+. ||+.+|+.|...|+ +|+++.|+.
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            678999999655 99999999999999 577777753

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=86.46  E-value=0.35  Score=39.81  Aligned_cols=30  Identities=30%  Similarity=0.543  Sum_probs=28.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      .|.|||.|.-|..+|..|...|.+|++.+.
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            589999999999999999999999999975

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.20  E-value=0.31  Score=35.22  Aligned_cols=62  Identities=16%  Similarity=0.296  Sum_probs=46.4

Q ss_pred             cCCCEEEEEcC----chHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHhCCCc-ccCHHHHHHhCCeeeeccC
Q psy16115        107 FGGKQVVLCGY----GEVGKGCCQSLKGLG-CVIYITEIDPICALQACMDGFS-VVKLNEVIRTVDIVVTATG  173 (258)
Q Consensus       107 l~g~~V~IiG~----G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~~g~~-~~~l~e~~~~aDvvi~~~~  173 (258)
                      +.-++|+|||+    |..|..+.+.|+..| .+|+.+++.....     .|.. +.++.++-...|+++++..
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp   73 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP   73 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecC
Confidence            46789999997    679999999999876 4898887654321     3544 4467776667899999864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=86.10  E-value=0.95  Score=36.94  Aligned_cols=62  Identities=16%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             EEEEEc-CchHHHHHHHHHHhCC-CEEEEEeCChhhHHHHHh-CCCcc--------cCHH-HHHHhCCeeeecc
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDPICALQACM-DGFSV--------VKLN-EVIRTVDIVVTAT  172 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~G-~~Vi~~d~~~~~~~~a~~-~g~~~--------~~l~-e~~~~aDvvi~~~  172 (258)
                      +|+|.| .|-||+.+++.|...| .+|+++|+.......... .+++.        .++. ...+++|+|+-+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a   75 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV   75 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccc
Confidence            688888 5779999999999888 589999886543222111 11211        1223 3566899998764

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.47  E-value=0.51  Score=37.55  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=27.5

Q ss_pred             EEEEEcCch-HHHHHHHHHHhCCCEEEEEeC-ChhhH
Q psy16115        111 QVVLCGYGE-VGKGCCQSLKGLGCVIYITEI-DPICA  145 (258)
Q Consensus       111 ~V~IiG~G~-IG~~~a~~l~~~G~~Vi~~d~-~~~~~  145 (258)
                      .++|.|.+. ||+.+|+.|...|++|++.+. ++..+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~   39 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAA   39 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHH
Confidence            466778766 999999999999999988654 44443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.33  E-value=1.1  Score=33.84  Aligned_cols=88  Identities=14%  Similarity=0.081  Sum_probs=50.0

Q ss_pred             CCEEEEEc-CchHHHHHHHHHHhCC-CEEEEEeCChh--h-HHHHHh--CCCc----ccCHHHHHHhCCeeeeccCcccc
Q psy16115        109 GKQVVLCG-YGEVGKGCCQSLKGLG-CVIYITEIDPI--C-ALQACM--DGFS----VVKLNEVIRTVDIVVTATGNKNV  177 (258)
Q Consensus       109 g~~V~IiG-~G~IG~~~a~~l~~~G-~~Vi~~d~~~~--~-~~~a~~--~g~~----~~~l~e~~~~aDvvi~~~~~~~~  177 (258)
                      .-+|+|+| .|-+|+.+.+.|...- .++.....+..  + ......  .+..    ....++...++|+++.|+...  
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~--   82 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHG--   82 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSS--
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccc--
Confidence            35799999 5779999999998763 45554432211  1 111100  0111    112334457899999996443  


Q ss_pred             ccHHHHhcCCCCcEEEecCCC
Q psy16115        178 VTREHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       178 i~~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+....+.....+++.+..
T Consensus        83 ~s~~~~~~l~~~~~~v~~~~~  103 (183)
T d2cvoa1          83 TTQEIIKGLPQELKIVDLSAD  103 (183)
T ss_dssp             HHHHHHHTSCSSCEEEECSST
T ss_pred             hHHHHHHHHHhcCcccccchh
Confidence            333455556666666666554

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.31  E-value=0.4  Score=36.92  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=26.1

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC-EEEEEeC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEI  140 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~  140 (258)
                      .|.|||.|+-|..+|..+...|. +|.+.+.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            47899999999999999999887 4888775

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=84.83  E-value=0.56  Score=37.37  Aligned_cols=32  Identities=22%  Similarity=0.191  Sum_probs=28.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .|.|||.|+-|...|.++..+|+++.++..+.
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            48899999999999999999999988887653

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=84.82  E-value=0.95  Score=34.94  Aligned_cols=97  Identities=14%  Similarity=0.154  Sum_probs=63.1

Q ss_pred             HHHHHHHhCCCEEEEEeC----ChhhHHHHHhCCCccc-CHHHHHHhCCeeeecc-CccccccHHHHhcCCCCcEEEecC
Q psy16115        123 GCCQSLKGLGCVIYITEI----DPICALQACMDGFSVV-KLNEVIRTVDIVVTAT-GNKNVVTREHMDKMKNGCVVCNMG  196 (258)
Q Consensus       123 ~~a~~l~~~G~~Vi~~d~----~~~~~~~a~~~g~~~~-~l~e~~~~aDvvi~~~-~~~~~i~~~~l~~~k~g~~ivnvg  196 (258)
                      ..++.|...|.+|.+=.-    .....+.-.+.|+... +.++++.++|+|+-.. ....-...+.++.||+|.+++-.-
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e~~~~ei~~lk~g~~li~~l  100 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHL  100 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGGGSCCGGGGSCTTCEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccccchhHhhhccCceEEEEec
Confidence            456778888999888411    1111223345677654 5678889999886542 122222225688899999998765


Q ss_pred             CC-ChhhchhhhcCCCceeeeecc
Q psy16115        197 HS-NTEIDVNSLRTPDLTWEKVRS  219 (258)
Q Consensus       197 ~~-~~~~~~~~l~~~~i~~~~~~~  219 (258)
                      .. .....++.|..+.++......
T Consensus       101 ~p~~~~~~~~~l~~~~it~~a~e~  124 (194)
T d1l7da2         101 GALTNRPVVEALTKRKITAYAMEL  124 (194)
T ss_dssp             CGGGCHHHHHHHHHTTCEEEEGGG
T ss_pred             ccccchhHHHHHHhcCceEEeeec
Confidence            55 566678888888888776643

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=84.79  E-value=0.8  Score=37.91  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             CCEEEEEcCc---hHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        109 GKQVVLCGYG---EVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       109 g~~V~IiG~G---~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      +|.++|-|.|   -||+.+|+.|...|++|++.++...
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~   39 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV   39 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchh
Confidence            5778899976   4999999999999999999877654

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=84.66  E-value=0.99  Score=33.23  Aligned_cols=87  Identities=17%  Similarity=0.046  Sum_probs=46.8

Q ss_pred             EEEEEc-CchHHHHHHHHHHhC----CCEEEEEeCChhhHHHHHhCCCc----c-cCHHHHHHhCCeeeeccCcccccc-
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGL----GCVIYITEIDPICALQACMDGFS----V-VKLNEVIRTVDIVVTATGNKNVVT-  179 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~----G~~Vi~~d~~~~~~~~a~~~g~~----~-~~l~e~~~~aDvvi~~~~~~~~i~-  179 (258)
                      +|+|+| .|-+|+.+.+.|...    ..++..+..+.... +....+..    . ..-.+.++++|++|.|+.....-. 
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g-k~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~   80 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV-PAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKV   80 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS-BCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc-cccccCCcceeeecccchhhhccccEEEEecCchHHHHH
Confidence            699999 688999999877532    24555543322110 00011111    1 112345788999999974432111 


Q ss_pred             HHHHhcCCCCcEEEecCCC
Q psy16115        180 REHMDKMKNGCVVCNMGHS  198 (258)
Q Consensus       180 ~~~l~~~k~g~~ivnvg~~  198 (258)
                      ...+.....+.++||.|..
T Consensus        81 ~~~l~~~g~~~~VIDlSsd   99 (147)
T d1mb4a1          81 YPALRQAGWKGYWIDAAST   99 (147)
T ss_dssp             HHHHHHTTCCSEEEESSST
T ss_pred             hHHHHHcCCceEEEeCCcc
Confidence            0122222344679998876

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.62  E-value=0.43  Score=39.64  Aligned_cols=30  Identities=20%  Similarity=0.198  Sum_probs=28.3

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      .|.|||.|.-|..+|..|...|.+|++.++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            489999999999999999999999999986

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.56  E-value=0.49  Score=38.93  Aligned_cols=31  Identities=19%  Similarity=0.329  Sum_probs=28.1

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      |+|+|.| .|-||..+++.|...|.+|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7899999 677999999999999999999974

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.39  E-value=0.41  Score=37.48  Aligned_cols=31  Identities=16%  Similarity=0.238  Sum_probs=25.8

Q ss_pred             EEEEEcCchHHHHHHHHHHhCC---CEEEEEeCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLG---CVIYITEID  141 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G---~~Vi~~d~~  141 (258)
                      +|.|||.|+-|...|.++..+|   .+|.+++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            7999999999999998876655   568888865

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=0.54  Score=36.37  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=27.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHHhCCC--EEEEEeCC
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLKGLGC--VIYITEID  141 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~~~G~--~Vi~~d~~  141 (258)
                      ..+++|||.|.+|..+|..|+..|.  +|++++..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            3578999999999999999987764  68888754

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.19  E-value=0.82  Score=32.84  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=32.1

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~  142 (258)
                      .+||+|+|+|.|.-+..-|..|..+-.+|+++.+.+
T Consensus        32 frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   67 (130)
T d1vdca2          32 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD   67 (130)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecc
Confidence            489999999999999999999999888999986654

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.12  E-value=0.32  Score=43.63  Aligned_cols=36  Identities=17%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             cCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCCh
Q psy16115        107 FGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDP  142 (258)
Q Consensus       107 l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~  142 (258)
                      |.+.+|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            578999999999999999999999997 699998653

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=82.53  E-value=2.6  Score=29.82  Aligned_cols=93  Identities=11%  Similarity=0.185  Sum_probs=59.2

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHhCCCcccCHHHHHHhCCeeeeccCccccccHHHHhcCC-CC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACMDGFSVVKLNEVIRTVDIVVTATGNKNVVTREHMDKMK-NG  189 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~~g~~~~~l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k-~g  189 (258)
                      +|+|.  +++-......++..+ +|+.++.++.         ....++.+.++++|.++...++  -++++.|+.+. .-
T Consensus         3 kVlit--~~~~~~~~~~l~~~~-~v~~~~~~~~---------~s~~el~~~~~~~d~ii~~~~~--~i~~~~l~~~~~~L   68 (129)
T d1gdha2           3 KILIT--WPLPEAAMARARESY-DVIAHGDDPK---------ITIDEMIETAKSVDALLITLNE--KCRKEVIDRIPENI   68 (129)
T ss_dssp             EEEES--SCCCHHHHHHHHTTS-EEEECCSTTC---------CCHHHHHHHHTTCSEEEEETTS--CBCHHHHHHSCTTC
T ss_pred             EEEEe--CCCCHHHHHHHHcCC-cEEEeCCCCC---------CCHHHHHHHhcCCCEEEEcCCc--hhhhHHHhhhhhcc
Confidence            45553  455566666776544 6655432211         1112345567789988764333  47888898875 46


Q ss_pred             cEEEecCCCChhhchhhhcCCCceeeee
Q psy16115        190 CVVCNMGHSNTEIDVNSLRTPDLTWEKV  217 (258)
Q Consensus       190 ~~ivnvg~~~~~~~~~~l~~~~i~~~~~  217 (258)
                      -.|...|.|-..++++++.++.|.+...
T Consensus        69 K~I~~~gvG~d~ID~~~a~~~gI~V~nt   96 (129)
T d1gdha2          69 KCISTYSIGFDHIDLDACKARGIKVGNA   96 (129)
T ss_dssp             CEEEEESSCCTTBCHHHHHHTTCEEECC
T ss_pred             eeeeecccCCccccHHHHHhCCCEEEEC
Confidence            6888889996667788888888887765

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.45  E-value=0.54  Score=36.82  Aligned_cols=42  Identities=14%  Similarity=0.072  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCCCEEEEEeCChhhHHHHHh
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPICALQACM  150 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~~~~~a~~  150 (258)
                      .|++|+=||+|. |......++..+.+|+++|.++...+.|.+
T Consensus        53 ~g~~VLdIGcG~-G~~a~~~a~~~~~~v~~id~s~~~~~~a~~   94 (229)
T d1zx0a1          53 KGGRVLEVGFGM-AIAASKVQEAPIDEHWIIECNDGVFQRLRD   94 (229)
T ss_dssp             TCEEEEEECCTT-SHHHHHHHTSCEEEEEEEECCHHHHHHHHH
T ss_pred             CCCeEEEeeccc-hHHHHHHHHcCCCeEEEeCCCHHHHHHHHH
Confidence            789999999996 655555555555689999999987766544

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.39  E-value=0.79  Score=37.01  Aligned_cols=30  Identities=13%  Similarity=0.252  Sum_probs=26.7

Q ss_pred             EEEEEc-CchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      +|+|.| .|-||+.+++.|...|.+|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            688887 678999999999999999999984

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.07  E-value=0.89  Score=37.38  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      |.|+|.| .|-||+.+++.|...|.+|+++|+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            6788888 567999999999999999999975

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.02  E-value=0.36  Score=39.35  Aligned_cols=100  Identities=20%  Similarity=0.148  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHhC------C----Ccc--cCHHHH-H--HhCCeeee
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACMD------G----FSV--VKLNEV-I--RTVDIVVT  170 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~------g----~~~--~~l~e~-~--~~aDvvi~  170 (258)
                      +|++|+=+|+|. |......++..|  .+|+.+|.+++..+.|++.      +    ...  .+..+. +  ...|.|++
T Consensus        96 PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~l  174 (264)
T d1i9ga_          96 PGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL  174 (264)
T ss_dssp             TTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEE
Confidence            899999999997 555555555544  3899999999887766541      1    111  122221 1  23688888


Q ss_pred             ccCccccccHHHHhcCCCCcEEEecCCC--Chhhchhhhc
Q psy16115        171 ATGNKNVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLR  208 (258)
Q Consensus       171 ~~~~~~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~  208 (258)
                      ....+...-.+.-+.||+|++++-..-.  .....+++|+
T Consensus       175 dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~  214 (264)
T d1i9ga_         175 DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALR  214 (264)
T ss_dssp             ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHH
Confidence            7555543334778889999999876544  2333455664

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=81.90  E-value=0.82  Score=37.50  Aligned_cols=30  Identities=27%  Similarity=0.445  Sum_probs=26.8

Q ss_pred             EEEEEc-CchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        111 QVVLCG-YGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       111 ~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      +|+|+| .|-||+.+++.|...|.+|+++|+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            588998 566999999999999999999986

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=81.86  E-value=0.58  Score=38.88  Aligned_cols=30  Identities=23%  Similarity=0.259  Sum_probs=27.9

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEI  140 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~  140 (258)
                      .|.|||.|.-|..+|..|...|.+|++.++
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            589999999999999999999999999985

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=81.62  E-value=0.42  Score=37.11  Aligned_cols=65  Identities=23%  Similarity=0.273  Sum_probs=43.1

Q ss_pred             ccCCCEEEEEcCchHHHHHHHHHHhCCC-EEEEEeCChhhHHHHHhCC--Cc--ccCHHHHHHhCCeeeecc
Q psy16115        106 MFGGKQVVLCGYGEVGKGCCQSLKGLGC-VIYITEIDPICALQACMDG--FS--VVKLNEVIRTVDIVVTAT  172 (258)
Q Consensus       106 ~l~g~~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~~~~~~~a~~~g--~~--~~~l~e~~~~aDvvi~~~  172 (258)
                      ++.|++|+=+|+|. |.. +..+...|+ +|+++|.++...+.+++.-  ++  ..+..++-...|+|+..+
T Consensus        46 dl~Gk~VLDlGcGt-G~l-~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NP  115 (197)
T d1ne2a_          46 NIGGRSVIDAGTGN-GIL-ACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNP  115 (197)
T ss_dssp             SSBTSEEEEETCTT-CHH-HHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECC
T ss_pred             CCCCCEEEEeCCCC-cHH-HHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCc
Confidence            46899999999997 533 334555676 6999999998776665531  11  234444444678888753

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=81.18  E-value=0.44  Score=39.36  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=29.6

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCCEEEEEeCChh
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGCVIYITEIDPI  143 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~~Vi~~d~~~~  143 (258)
                      .|+|||.|.-|+..|..+...|.+|++++..+.
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~   41 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            589999999999999999999999999987543

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.02  E-value=0.67  Score=38.08  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=26.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHH----hCCCEEEEEeCC
Q psy16115        109 GKQVVLCGYGEVGKGCCQSLK----GLGCVIYITEID  141 (258)
Q Consensus       109 g~~V~IiG~G~IG~~~a~~l~----~~G~~Vi~~d~~  141 (258)
                      .-.|+|||.|.-|...|..|.    ..|++|++++..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~   57 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA   57 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence            356999999999998887664    479999999864

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.98  E-value=2  Score=30.71  Aligned_cols=59  Identities=10%  Similarity=0.202  Sum_probs=44.7

Q ss_pred             HHHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeec
Q psy16115        158 LNEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       158 l~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~  218 (258)
                      +.+.++++|.++...  ..-++++.++.+++-..|...|.|-..+++++.....|.+....
T Consensus        41 l~~~~~~~d~ii~~~--~~~i~~~~i~~~p~Lk~I~~~gvG~D~IDl~aa~~~gI~V~ntp   99 (132)
T d1sc6a2          41 LKESIRDAHFIGLRS--RTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAP   99 (132)
T ss_dssp             HHHHTTSCSEEEECS--SCCBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCT
T ss_pred             HHHhhcCCcEEEEec--ccccChhhhhccccceeEEEecccccccCHHHHHhCCCEEEECC
Confidence            345567899877543  33577888888888889999999955688888888888887663

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.55  E-value=1.6  Score=31.08  Aligned_cols=58  Identities=12%  Similarity=0.151  Sum_probs=44.6

Q ss_pred             HHHHHhCCeeeeccCccccccHHHHhcCCCCcEEEecCCCChhhchhhhcCCCceeeeec
Q psy16115        159 NEVIRTVDIVVTATGNKNVVTREHMDKMKNGCVVCNMGHSNTEIDVNSLRTPDLTWEKVR  218 (258)
Q Consensus       159 ~e~~~~aDvvi~~~~~~~~i~~~~l~~~k~g~~ivnvg~~~~~~~~~~l~~~~i~~~~~~  218 (258)
                      .+.++++|.++...+  ..++++.++.+++-..|...|.|-..+++++..++.|.+....
T Consensus        37 ~~~~~~~d~ii~~~~--~~i~~~~l~~~p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n~p   94 (130)
T d1ygya2          37 LAAVPEADALLVRSA--TTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAP   94 (130)
T ss_dssp             HHHGGGCSEEEECSS--SCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCT
T ss_pred             HHHcCCCEEEEEcCc--ccchHHHHhhcccceEEeeecccccchhHHHHHHCCceEEecC
Confidence            345668998776433  2477889998888889999999966778888888889887663

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=1.4  Score=36.60  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHhCC--CEEEEEeCChhhHHHHHhC------------------CCcc--cCHH----HH
Q psy16115        108 GGKQVVLCGYGEVGKGCCQSLKGLG--CVIYITEIDPICALQACMD------------------GFSV--VKLN----EV  161 (258)
Q Consensus       108 ~g~~V~IiG~G~IG~~~a~~l~~~G--~~Vi~~d~~~~~~~~a~~~------------------g~~~--~~l~----e~  161 (258)
                      +|++|+=+|+|. |......++..|  .+|+.+|+++.....|++.                  +++.  .++.    ..
T Consensus        98 pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~  176 (324)
T d2b25a1          98 PGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  176 (324)
T ss_dssp             TTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhccccc
Confidence            899999999998 665555566554  3899999999877655431                  1110  0111    11


Q ss_pred             H-HhCCeeeeccCcc-ccccHHHHhcCCCCcEEEecCCC--ChhhchhhhcC
Q psy16115        162 I-RTVDIVVTATGNK-NVVTREHMDKMKNGCVVCNMGHS--NTEIDVNSLRT  209 (258)
Q Consensus       162 ~-~~aDvvi~~~~~~-~~i~~~~l~~~k~g~~ivnvg~~--~~~~~~~~l~~  209 (258)
                      . ...|.|++-...+ ..+. +..+.||||++++-....  .....+++|+.
T Consensus       177 ~~~~fD~V~LD~p~P~~~l~-~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~  227 (324)
T d2b25a1         177 KSLTFDAVALDMLNPHVTLP-VFYPHLKHGGVCAVYVVNITQVIELLDGIRT  227 (324)
T ss_dssp             ----EEEEEECSSSTTTTHH-HHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCCcceEeecCcCHHHHHH-HHHHhccCCCEEEEEeCCHHHHHHHHHHHHH
Confidence            1 2358887754333 3554 778889999999865433  23345566653

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=80.44  E-value=0.65  Score=37.48  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=27.7

Q ss_pred             CEEEEEc-CchHHHHHHHHHHhCCCEEEEEeCC
Q psy16115        110 KQVVLCG-YGEVGKGCCQSLKGLGCVIYITEID  141 (258)
Q Consensus       110 ~~V~IiG-~G~IG~~~a~~l~~~G~~Vi~~d~~  141 (258)
                      |+|+|.| .|-||+.+++.|...|..+++.+..
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            6899999 6779999999999999998887653

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.10  E-value=0.59  Score=36.34  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=26.8

Q ss_pred             EEEEEcCchHHHHHHHHHHhCCC-EEEEEeCC
Q psy16115        111 QVVLCGYGEVGKGCCQSLKGLGC-VIYITEID  141 (258)
Q Consensus       111 ~V~IiG~G~IG~~~a~~l~~~G~-~Vi~~d~~  141 (258)
                      .|.|||.|+-|...|..+..+|. +|.+.+..
T Consensus         5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~   36 (240)
T d1feca1           5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ   36 (240)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            58999999999999999998887 48888754