Psyllid ID: psy16143

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MSEQDLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKGNGARGHFFFGITRWQIENQGRQ
cccccEEEEEEcccHHHcccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEcccccccccccEEEcccccccccccccEEEEEEEccccEEEEEEEEEEccccccccccccEEEccccccccccccccccccccccccccccccHHHHccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccEEEEEEccccccccccccccccEEEEcccccccc
cccccEEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccEEEEEEcccccccccccccEEEEEEccccEEEEEcEEEEEEcHHHcccccccHHHEEEHHHHcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccHHHHHHHEEccccccccccccccEEEEccccccccccccccccccccccccEEEEEEEccccccccccccccccccccEcccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccHEHHHHHHHHHHcccc
MSEQDLKLLFWENHLVVKWnvlypvdpndqLSWLASTLLEAEksnekvhilshippgsedtMQVFQREYRKIINRFEYTIAaefnghthyeditifydknnssratnvaynggsitsyynvnpnyrlykvargtwevtdfdsytynissivndsepdwiKLYSFKeeyglestrpeeisnnhlkgsnkehydeKRKTKILCDimtsevadsthcnllkkdvlfdlkdqgipltpervcgtvlensncsvkngpqvdwqvdtnygtkvdritapsesrylasgdeisiiqltdihydpkylagktahciaplccrvdqpnassetdratkyghydncdmPLDVIRSALEQIKKHKIFWlsekghakgngarghfFFGITRWQIENQGRQ
MSEQDLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHIlshippgsedtmqVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNIssivndsepdwIKLYSFKEEYGLestrpeeisnnhlkgsnkehydekRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTPERVCGTVLEnsncsvkngpqvdwqVDTNYGtkvdritapsesrylasgDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKGNGARGHFFFGITRWQIENQGRQ
MSEQDLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNllkkdvlfdlkdQGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKGNGARGHFFFGITRWQIENQGRQ
*****LKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAE****KVHILSHI*****DTMQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYG***************************TKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVD**********ATKYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKGNGARGHFFFGITRWQI******
**EQDLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGT*********************IIQLTDIHYDPKYLAGKTAHCIAPLC****************KYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKGNGARGHFFFGITR**I******
MSEQDLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKGNGARGHFFFGITRWQIENQGRQ
**EQDLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSES***ASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNAS*****ATKYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKGNGARGHFFFGITRWQIENQ***
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MSEQDLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIVNDSEPDWIKLYSFKEEYGLESTRPEEISNNHLKGSNKEHYDEKRKTKILCDIMTSEVADSTHCNLLKKDVLFDLKDQGIPLTPERVCGTVLENSNCSVKNGPQVDWQVDTNYGTKVDRITAPSESRYLASGDEISIIQLTDIHYDPKYLAGKTAHCIAPLCCRVDQPNASSETDRATKYGHYDNCDMPLDVIRSALEQIKKHKIFWLSEKGHAKGNGARGHFFFGITRWQIENQGRQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query388 2.2.26 [Sep-21-2011]
Q10916564 Sphingomyelin phosphodies yes N/A 0.386 0.265 0.359 4e-26
Q04519627 Sphingomyelin phosphodies yes N/A 0.412 0.255 0.371 1e-25
P17405629 Sphingomyelin phosphodies yes N/A 0.412 0.254 0.365 1e-25
Q0VD19625 Sphingomyelin phosphodies yes N/A 0.399 0.248 0.358 2e-24
Q23498618 Sphingomyelin phosphodies no N/A 0.502 0.315 0.3 6e-23
Q54C16637 Sphingomyelin phosphodies yes N/A 0.386 0.235 0.333 7e-21
Q9UAY4589 Putative sphingomyelin ph no N/A 0.404 0.266 0.349 3e-20
Q55C09583 Sphingomyelin phosphodies no N/A 0.523 0.348 0.264 1e-15
Q641Z7445 Acid sphingomyelinase-lik no N/A 0.536 0.467 0.244 5e-14
P58242456 Acid sphingomyelinase-lik no N/A 0.365 0.311 0.281 1e-13
>sp|Q10916|ASM1_CAEEL Sphingomyelin phosphodiesterase 1 OS=Caenorhabditis elegans GN=asm-1 PE=1 SV=2 Back     alignment and function desciption
 Score =  119 bits (298), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 92/153 (60%), Gaps = 3/153 (1%)

Query: 26  DPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYTIAAEFN 85
           DP+  +SW    L E+EK  E+V++L+HIPPG  + ++ +   Y ++I RF  TIAA+F 
Sbjct: 354 DPDSSMSWFVKELFESEKKGEQVYVLAHIPPGDSECLEGWAFNYYRVIQRFSSTIAAQFF 413

Query: 86  GHTHYEDITIFYD--KNNSSRATNVAYNGGSITSYYNVNPNYRLYKV-ARGTWEVTDFDS 142
           GH H +  T+FY+   N SS+  +V Y   S+T++   NP YR+Y++     +++ DF +
Sbjct: 414 GHDHLDYFTVFYEDMHNVSSKPISVGYASPSVTTFEYQNPAYRIYEIDPYNKFKIVDFTT 473

Query: 143 YTYNISSIVNDSEPDWIKLYSFKEEYGLESTRP 175
           Y  ++     D +P W KLYS ++ +G++   P
Sbjct: 474 YYADLEKATEDKKPVWEKLYSARQAHGMDDLSP 506
Converts sphingomyelin to ceramide.
Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q04519|ASM_MOUSE Sphingomyelin phosphodiesterase OS=Mus musculus GN=Smpd1 PE=2 SV=2 Back     alignment and function description
>sp|P17405|ASM_HUMAN Sphingomyelin phosphodiesterase OS=Homo sapiens GN=SMPD1 PE=1 SV=4 Back     alignment and function description
>sp|Q0VD19|ASM_BOVIN Sphingomyelin phosphodiesterase OS=Bos taurus GN=SMPD1 PE=2 SV=1 Back     alignment and function description
>sp|Q23498|ASM2_CAEEL Sphingomyelin phosphodiesterase 2 OS=Caenorhabditis elegans GN=asm-2 PE=1 SV=3 Back     alignment and function description
>sp|Q54C16|SGMB_DICDI Sphingomyelin phosphodiesterase B OS=Dictyostelium discoideum GN=sgmB PE=3 SV=1 Back     alignment and function description
>sp|Q9UAY4|ASM3_CAEEL Putative sphingomyelin phosphodiesterase asm-3 OS=Caenorhabditis elegans GN=asm-3 PE=2 SV=2 Back     alignment and function description
>sp|Q55C09|SGMA_DICDI Sphingomyelin phosphodiesterase A OS=Dictyostelium discoideum GN=sgmA PE=3 SV=1 Back     alignment and function description
>sp|Q641Z7|ASM3A_RAT Acid sphingomyelinase-like phosphodiesterase 3a OS=Rattus norvegicus GN=Smpdl3a PE=2 SV=1 Back     alignment and function description
>sp|P58242|ASM3B_MOUSE Acid sphingomyelinase-like phosphodiesterase 3b OS=Mus musculus GN=Smpdl3b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
332024622448 Sphingomyelin phosphodiesterase [Acromyr 0.404 0.350 0.487 8e-39
270005032 1159 hypothetical protein TcasGA2_TC007031 [T 0.530 0.177 0.384 3e-38
270000794 567 hypothetical protein TcasGA2_TC011039 [T 0.381 0.261 0.506 3e-38
158296572 636 AGAP008487-PA [Anopheles gambiae str. PE 0.525 0.320 0.404 5e-38
91091918462 PREDICTED: similar to AGAP008487-PA [Tri 0.399 0.335 0.484 7e-38
332374082 609 unknown [Dendroctonus ponderosae] 0.523 0.333 0.412 2e-37
332376871 508 unknown [Dendroctonus ponderosae] 0.510 0.389 0.382 1e-36
170053649 630 sphingomyelin phosphodiesterase [Culex q 0.528 0.325 0.376 1e-36
321465276 570 hypothetical protein DAPPUDRAFT_322475 [ 0.481 0.328 0.397 1e-35
157113241 629 sphingomyelin phosphodiesterase [Aedes a 0.515 0.317 0.362 1e-35
>gi|332024622|gb|EGI64819.1| Sphingomyelin phosphodiesterase [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 112/160 (70%), Gaps = 3/160 (1%)

Query: 13  NHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKI 72
           NH   +W +  P DP+ QL WLA  LL+AE   E VHIL+H+PPG+ D    ++REY KI
Sbjct: 224 NHFC-RWQLYQPRDPDGQLQWLADMLLQAEMDREYVHILAHLPPGNTDCQTTWKREYVKI 282

Query: 73  INRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVAR 132
           +NRF + I A+FNGHTH +++ + Y  +++S+ +NVA+NGGS+T+Y NVNPNY+ Y +  
Sbjct: 283 VNRFAHIIRAQFNGHTHKDELQLIYGSDDNSKISNVAWNGGSVTTYQNVNPNYKFYTIDS 342

Query: 133 GTWEVTDFDSYTYN--ISSIVNDSEPDWIKLYSFKEEYGL 170
             +EV DF+++ YN  +++I +D  P W K YSFKEEY L
Sbjct: 343 KNYEVKDFENWIYNLTLANINSDQRPLWYKSYSFKEEYEL 382

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270005032|gb|EFA01480.1| hypothetical protein TcasGA2_TC007031 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270000794|gb|EEZ97241.1| hypothetical protein TcasGA2_TC011039 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|158296572|ref|XP_316957.4| AGAP008487-PA [Anopheles gambiae str. PEST] gi|157014774|gb|EAA12889.4| AGAP008487-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|91091918|ref|XP_967056.1| PREDICTED: similar to AGAP008487-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|332374082|gb|AEE62182.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|332376871|gb|AEE63575.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|170053649|ref|XP_001862773.1| sphingomyelin phosphodiesterase [Culex quinquefasciatus] gi|167874082|gb|EDS37465.1| sphingomyelin phosphodiesterase [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|321465276|gb|EFX76278.1| hypothetical protein DAPPUDRAFT_322475 [Daphnia pulex] Back     alignment and taxonomy information
>gi|157113241|ref|XP_001651958.1| sphingomyelin phosphodiesterase [Aedes aegypti] gi|108877825|gb|EAT42050.1| AAEL006381-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
FB|FBgn0039769666 CG15534 [Drosophila melanogast 0.404 0.235 0.407 3.2e-31
FB|FBgn0034997735 CG3376 [Drosophila melanogaste 0.445 0.235 0.383 3.7e-31
FB|FBgn0039768692 CG15533 [Drosophila melanogast 0.391 0.219 0.391 7.1e-28
WB|WBGene00000211564 asm-1 [Caenorhabditis elegans 0.435 0.299 0.357 3.5e-27
UNIPROTKB|Q10916564 asm-1 "Sphingomyelin phosphodi 0.435 0.299 0.357 3.5e-27
UNIPROTKB|F1RMN6451 SMPD1 "Uncharacterized protein 0.396 0.341 0.374 1.6e-26
RGD|1549719627 Smpd1 "sphingomyelin phosphodi 0.412 0.255 0.383 3.7e-26
ZFIN|ZDB-GENE-110411-222675 smpd1 "sphingomyelin phosphodi 0.404 0.232 0.370 1.2e-25
MGI|MGI:98325627 Smpd1 "sphingomyelin phosphodi 0.412 0.255 0.377 1.7e-25
UNIPROTKB|P17405629 SMPD1 "Sphingomyelin phosphodi 0.399 0.246 0.370 2.2e-25
FB|FBgn0039769 CG15534 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 330 (121.2 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
 Identities = 66/162 (40%), Positives = 97/162 (59%)

Query:    29 DQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYTIAAEFNGHT 88
             +QL W   TLL AE++ E VHIL+HIP G  D    + +EY +++ RF   I   F+GHT
Sbjct:   415 EQLQWFHDTLLSAEEAGESVHILTHIPAGDGDCWCNWSQEYNRVLTRFNGIITGVFSGHT 474

Query:    89 HYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNIS 148
             H +++ + Y ++    AT V +NGGS+TSY N NPNYRLY++    W+V D  +YT+N++
Sbjct:   475 HKDEMNLHYSEDGY--ATVVNWNGGSLTSYSNKNPNYRLYELHPENWQVLDHHTYTFNLT 532

Query:   149 --SIVNDSEPDWIKLYSFKEEYGLESTRPEEISNNHLKGSNK 188
               ++  D +P W   Y F +EY  E T P  I    L+ + K
Sbjct:   533 EANLTPDEQPKWELEYQFTKEY-TEDTSPAGIDRLLLEMAEK 573
GO:0006684 "sphingomyelin metabolic process" evidence=ISS
GO:0004767 "sphingomyelin phosphodiesterase activity" evidence=ISS
GO:0006685 "sphingomyelin catabolic process" evidence=IEA
FB|FBgn0034997 CG3376 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0039768 CG15533 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00000211 asm-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q10916 asm-1 "Sphingomyelin phosphodiesterase 1" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1RMN6 SMPD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1549719 Smpd1 "sphingomyelin phosphodiesterase 1, acid lysosomal" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110411-222 smpd1 "sphingomyelin phosphodiesterase 1, acid lysosomal" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:98325 Smpd1 "sphingomyelin phosphodiesterase 1, acid lysosomal" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P17405 SMPD1 "Sphingomyelin phosphodiesterase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
cd00842296 cd00842, MPP_ASMase, acid sphingomyelinase and rel 1e-37
cd00842 296 cd00842, MPP_ASMase, acid sphingomyelinase and rel 8e-12
cd07396267 cd07396, MPP_Nbla03831, Homo sapiens Nbla03831 and 2e-05
>gnl|CDD|163618 cd00842, MPP_ASMase, acid sphingomyelinase and related proteins, metallophosphatase domain Back     alignment and domain information 
 Score =  137 bits (346), Expect = 1e-37
 Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 2/105 (1%)

Query: 24  PVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPG--SEDTMQVFQREYRKIINRFEYTIA 81
             DP  QL WL   L EAE++ EKV I+ HIPPG  S DT++ +   Y +IINR+  TIA
Sbjct: 192 ETDPAGQLQWLEDELQEAEQAGEKVWIIGHIPPGVNSYDTLENWSERYLQIINRYSDTIA 251

Query: 82  AEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYR 126
            +F GHTH ++  +FYD N++    NVA    S+T Y   NP +R
Sbjct: 252 GQFFGHTHRDEFRVFYDDNDTGEPINVALIAPSVTPYSGNNPGFR 296

Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination. Length = 296
>gnl|CDD|163618 cd00842, MPP_ASMase, acid sphingomyelinase and related proteins, metallophosphatase domain Back     alignment and domain information
>gnl|CDD|163639 cd07396, MPP_Nbla03831, Homo sapiens Nbla03831 and related proteins, metallophosphatase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 388
KOG3770|consensus577 100.0
KOG3770|consensus 577 99.95
cd00842296 MPP_ASMase acid sphingomyelinase and related prote 99.95
cd00842 296 MPP_ASMase acid sphingomyelinase and related prote 99.76
cd07395262 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, 99.49
cd07399214 MPP_YvnB Bacillus subtilis YvnB and related protei 99.29
cd07396267 MPP_Nbla03831 Homo sapiens Nbla03831 and related p 98.99
PRK11148275 cyclic 3',5'-adenosine monophosphate phosphodieste 98.92
TIGR03767496 P_acnes_RR metallophosphoesterase, PPA1498 family. 98.9
cd07378277 MPP_ACP5 Homo sapiens acid phosphatase 5 and relat 98.87
cd07402240 MPP_GpdQ Enterobacter aerogenes GpdQ and related p 98.73
cd00839294 MPP_PAPs purple acid phosphatases of the metalloph 98.71
TIGR03768492 RPA4764 metallophosphoesterase, RPA4764 family. Th 98.61
cd07401256 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metal 98.4
PTZ00422394 glideosome-associated protein 50; Provisional 98.32
PLN02533427 probable purple acid phosphatase 98.07
KOG2679|consensus336 97.81
TIGR03729239 acc_ester putative phosphoesterase. Members of thi 97.75
cd07383199 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase 97.57
cd07393232 MPP_DR1119 Deinococcus radiodurans DR1119 and rela 97.51
PF00149200 Metallophos: Calcineurin-like phosphoesterase; Int 97.39
KOG1378|consensus452 97.12
cd07392188 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and rel 96.88
COG1409301 Icc Predicted phosphohydrolases [General function 96.7
cd08163257 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related 95.51
cd07400144 MPP_YydB Bacillus subtilis YydB and related protei 95.48
cd07404166 MPP_MS158 Microscilla MS158 and related proteins, 94.48
cd07388224 MPP_Tt1561 Thermus thermophilus Tt1561 and related 94.2
COG1768230 Predicted phosphohydrolase [General function predi 93.6
PF00149200 Metallophos: Calcineurin-like phosphoesterase; Int 91.5
cd07402 240 MPP_GpdQ Enterobacter aerogenes GpdQ and related p 90.56
PF12850156 Metallophos_2: Calcineurin-like phosphoesterase su 89.93
cd07383199 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase 89.84
cd07403129 MPP_TTHA0053 Thermus thermophilus TTHA0053 and rel 89.63
PF09423453 PhoD: PhoD-like phosphatase; InterPro: IPR018946 T 89.1
PRK11148 275 cyclic 3',5'-adenosine monophosphate phosphodieste 87.21
cd00840 223 MPP_Mre11_N Mre11 nuclease, N-terminal metallophos 86.8
cd00838131 MPP_superfamily metallophosphatase superfamily, me 86.61
cd07379135 MPP_239FB Homo sapiens 239FB and related proteins, 86.2
KOG1432|consensus379 86.18
cd07407282 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and 85.09
KOG1432|consensus 379 84.88
cd00841155 MPP_YfcE Escherichia coli YfcE and related protein 83.64
cd07395 262 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, 83.39
COG1409 301 Icc Predicted phosphohydrolases [General function 80.76
PRK11340 271 phosphodiesterase YaeI; Provisional 80.55
cd07385 223 MPP_YkuE_C Bacillus subtilis YkuE and related prot 80.33
>KOG3770|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.4e-43  Score=359.01  Aligned_cols=219  Identities=35%  Similarity=0.613  Sum_probs=201.5

Q ss_pred             CCCeEEEEEecc---cceEEEecCCCChhhHHHHHHHHHHHHHHCCCeEEEEEccCCCCCCchHHHHHHHHHHHHhhccc
Q psy16143          3 EQDLKLLFWENH---LVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQVFQREYRKIINRFEYT   79 (388)
Q Consensus         3 ~~~lr~i~~~t~---~~N~~~~~~~~DP~~Ql~WL~~~L~~A~~~~~kV~IigHiPpg~~d~~~~~~~~y~~iv~ry~~~   79 (388)
                      .-|||+|++|++   ..|||++.+.+||.+||+||..||++||.+|++|+|+||||||..+|...|+..|.+++.||+++
T Consensus       313 ~~Glr~IslNt~~c~~~N~~L~~n~tdp~~~lqWf~~~L~~ae~~GekVhil~HIPpG~~~c~~~ws~~f~~iv~r~~~t  392 (577)
T KOG3770|consen  313 IDGLRLISLNTNYCSAPNFWLYANQTDPIDQLQWFVDQLQEAESAGEKVHILGHIPPGDGVCLEGWSINFYRIVNRFRST  392 (577)
T ss_pred             cCCceEEEeccccccccceeeeecCCCchHHhhHHHHHHHHHHhcCCEEEEEEeeCCCCcchhhhhhHHHHHHHHHHHHh
Confidence            479999999987   67899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEeecccCCceeeeecCCCCCccceeeeecccccccCCCCCceEEEEEe-CCeeEEeeEEEEeeccccccCC-CCCc
Q psy16143         80 IAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVA-RGTWEVTDFDSYTYNISSIVND-SEPD  157 (388)
Q Consensus        80 I~~~ffGH~H~D~f~i~~~~~~~~~~~~~~~~~Psvtp~~~~NP~fRvy~~d-~~t~~v~d~~~Y~~dL~~an~~-~~~~  157 (388)
                      |+||||||+|.|+|+++|+... ++|+++++++||+|++.+.||+||+|.+| ..++.+.|+.+|++||++||.+ +.|.
T Consensus       393 I~gqf~GH~h~d~f~v~yde~~-~~p~~v~~i~~svtty~~~~p~yr~y~~~~~~~~~~~d~~ty~~Nlt~an~~~e~p~  471 (577)
T KOG3770|consen  393 IAGQFYGHTHIDEFRVFYDEET-GHPIAVAYIGPSVTTYYNKNPGYRIYAVDSTISFSVPDHRTYFYNLTSANLQPESPE  471 (577)
T ss_pred             hhhhccccCcceeEEEEecccc-CCceeeeeccccceehhccCCCceecccCcccceecccceEEEEehhhhcCCCCCCc
Confidence            9999999999999999999875 69999999999999999999999999999 5669999999999999999988 8999


Q ss_pred             eeeeeeeccccCCCCCChhccch-------h------hhc----CCC---CCCCchhhcccceecceecccccccccccc
Q psy16143        158 WIKLYSFKEEYGLESTRPEEISN-------N------HLK----GSN---KEHYDEKRKTKILCDIMTSEVADSTHCNLL  217 (388)
Q Consensus       158 W~~eY~~~~~Y~~~dlsp~s~~~-------d------~~~----~~~---~~~C~~~C~~~~lC~i~s~~~~d~~~C~~l  217 (388)
                      |+++|+..++|++.++||.+|++       |      ++|    +..   ...|+..|+...+|.++++...++..|..+
T Consensus       472 W~~~y~~~~~y~~~d~sp~~i~~~~~~~~~d~~lfrk~~~~~~~~~~~~~~~~cd~~C~~~~ic~~~~~~~~~~~~C~~l  551 (577)
T KOG3770|consen  472 WELLYTAFEAYGMQDQSPFSIDKLLDRMKTDTKLFRKYKRYPSRNMPPEIVYQCDTACYMQSICDTRSGIGYARTLCPEL  551 (577)
T ss_pred             hHhhhhhhhhhCcccCCchhhhhHhhhhccCHHHHhhceecCCCCCChhhccccchhhHHHhhhhhhhhcchhhhhhHHh
Confidence            99999999999999999999998       2      333    222   257999999999999999999999889887


Q ss_pred             cchhh
Q psy16143        218 KKDVL  222 (388)
Q Consensus       218 ~~~~~  222 (388)
                      ..++.
T Consensus       552 ~~~~~  556 (577)
T KOG3770|consen  552 EPDLN  556 (577)
T ss_pred             ccccC
Confidence            55443

>KOG3770|consensus Back     alignment and domain information
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain Back     alignment and domain information
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain Back     alignment and domain information
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional Back     alignment and domain information
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family Back     alignment and domain information
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family Back     alignment and domain information
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain Back     alignment and domain information
>PTZ00422 glideosome-associated protein 50; Provisional Back     alignment and domain information
>PLN02533 probable purple acid phosphatase Back     alignment and domain information
>KOG2679|consensus Back     alignment and domain information
>TIGR03729 acc_ester putative phosphoesterase Back     alignment and domain information
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain Back     alignment and domain information
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 Back     alignment and domain information
>KOG1378|consensus Back     alignment and domain information
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain Back     alignment and domain information
>COG1409 Icc Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain Back     alignment and domain information
>COG1768 Predicted phosphohydrolase [General function prediction only] Back     alignment and domain information
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11 Back     alignment and domain information
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain Back     alignment and domain information
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [] Back     alignment and domain information
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain Back     alignment and domain information
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B Back     alignment and domain information
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional Back     alignment and domain information
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain Back     alignment and domain information
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain Back     alignment and domain information
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain Back     alignment and domain information
>KOG1432|consensus Back     alignment and domain information
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>KOG1432|consensus Back     alignment and domain information
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain Back     alignment and domain information
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain Back     alignment and domain information
>COG1409 Icc Predicted phosphohydrolases [General function prediction only] Back     alignment and domain information
>PRK11340 phosphodiesterase YaeI; Provisional Back     alignment and domain information
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
2xmo_A443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 5e-08
2nxf_A322 Putative dimetal phosphatase; dinuclear metal cent 1e-07
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Length = 443 Back     alignment and structure
 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 17/178 (9%), Positives = 56/178 (31%), Gaps = 20/178 (11%)

Query: 28  NDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQV------FQREYRKIINRFEYTIA 81
              L W+  +   A+K+  K+  + H      + +        + ++    +      + 
Sbjct: 218 AGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVIDALTE--GAMD 275

Query: 82  AEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARG----TWEV 137
              +GH H ++I      +     T++     +++ +      Y     +      T++ 
Sbjct: 276 FSLSGHIHTQNIRSAKSTDGKE-ITDIV--TNALSVFP---HKYGNITYSAKNKNFTYQS 329

Query: 138 TDFDSYTYNISSIVNDSEPDWIKLYSFK--EEYGLESTRPEEISNNHLKGSNKEHYDE 193
              D   +  +    D        + ++     G +    + +++      N+   ++
Sbjct: 330 QKLDMEAWAKAQGSTDENLLNFDQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEK 387
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Length = 322 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
2xmo_A443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 99.27
2nxf_A322 Putative dimetal phosphatase; dinuclear metal cent 99.27
3d03_A274 Phosphohydrolase; glycerophosphodiesterase, metall 98.96
3ib7_A330 ICC protein; metallophosphoesterase, alpha-beta fo 98.72
3tgh_A342 Glideosome-associated protein 50; phosphatase fold 98.64
1ute_A313 Protein (II purple acid phosphatase); tartrate res 98.61
1xzw_A426 Purple acid phosphatase; hydrolase; HET: NAG FUC M 98.27
2qfp_A424 Purple acid phosphatase; binuclear, Fe-Zn, hydrola 98.07
2yeq_A527 Apased, PHOD, alkaline phosphatase D; hydrolase, p 97.42
1nnw_A252 Hypothetical protein; structural genomics, PSI, pr 96.03
3ck2_A176 Conserved uncharacterized protein (predicted phosp 95.45
1uf3_A228 Hypothetical protein TT1561; metallo-dependent pho 95.19
2yvt_A260 Hypothetical protein AQ_1956; structural genomics, 94.33
1s3l_A190 Hypothetical protein MJ0936; phosphodiesterase, nu 93.77
3ib7_A 330 ICC protein; metallophosphoesterase, alpha-beta fo 93.75
1z2w_A192 Vacuolar protein sorting 29; VPS29, retromer, phos 92.11
2a22_A215 Vacuolar protein sorting 29; alpha-beta-BETA-alpha 90.42
2q8u_A336 Exonuclease, putative; structural genomics, joint 90.36
3d03_A 274 Phosphohydrolase; glycerophosphodiesterase, metall 90.34
2xmo_A 443 LMO2642 protein; phosphodiesterase, hydrolase; 1.7 89.65
3qfm_A270 SAPH, putative uncharacterized protein; sandwich f 89.25
1xm7_A195 Hypothetical protein AQ_1665; structural genomics, 88.8
3rqz_A246 Metallophosphoesterase; PSI-biology, midwest cente 88.55
2nxf_A 322 Putative dimetal phosphatase; dinuclear metal cent 88.25
3n9k_A399 Glucan 1,3-beta-glucosidase; aromatic entranceway/ 86.01
3av0_A386 DNA double-strand break repair protein MRE11; DNA 84.27
4fbw_A 417 DNA repair protein RAD32; DNA double-strand break 83.43
4fbk_A 472 DNA repair and telomere maintenance protein NBS1, 83.07
3tho_B379 Exonuclease, putative; adenosine triphosphate, bac 81.82
1tvn_A293 Cellulase, endoglucanase G; glycoside hydrolase, C 80.01
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Back     alignment and structure
Probab=99.27  E-value=1.6e-11  Score=123.92  Aligned_cols=141  Identities=10%  Similarity=0.130  Sum_probs=102.7

Q ss_pred             CCCeEEEEEecccceE--E---EecCCCChhhHHHHHHHHHHHHHHCCCeEEEEEccCCCCCC-c-----hHHHHHHHHH
Q psy16143          3 EQDLKLLFWENHLVVK--W---NVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSED-T-----MQVFQREYRK   71 (388)
Q Consensus         3 ~~~lr~i~~~t~~~N~--~---~~~~~~DP~~Ql~WL~~~L~~A~~~~~kV~IigHiPpg~~d-~-----~~~~~~~y~~   71 (388)
                      ..++|||.+++..+..  |   ......-...|++||+++|+++++++.+++|++|+||.... .     .....+++.+
T Consensus       188 ~~~~~~i~Lds~~~~~~~~~~~~~~~g~~~~~ql~wL~~~L~~~~~~~~~~Iv~~H~p~~~~~~~~~~~~~~~~~~~l~~  267 (443)
T 2xmo_A          188 SSKVWLLMLDTAIYKTNMQQGNPTTEGGLTAGTLDWIKESSALAKKNGAKLIPVLHHNLTDHNDVIQKGYTINYNQQVID  267 (443)
T ss_dssp             BSSEEEEECCCBCCTTHHHHTSCCCCBCCCHHHHHHHHHHHHHHHHTTCEEEEECSSBSSCSSCC--CCSBCTTHHHHHH
T ss_pred             CCCEEEEEeeCCCcCcccccCCCCcCCccCHHHHHHHHHHHHHHHHcCCeEEEEECCCCcccccccccccccccHHHHHH
Confidence            4588999999874320  0   01112234589999999999999888999999999997632 1     1123567899


Q ss_pred             HHHhhccceeEEEeecccCCceeeeecCCCCCccceeeeecccccccCCCCCceEEEEEeCCeeEEeeEEEEeecccccc
Q psy16143         72 IINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDFDSYTYNISSIV  151 (388)
Q Consensus        72 iv~ry~~~I~~~ffGH~H~D~f~i~~~~~~~~~~~~~~~~~Psvtp~~~~NP~fRvy~~d~~t~~v~d~~~Y~~dL~~an  151 (388)
                      ++++|.  |.++|+||+|...++......+  .+ .+.+.++|++.   ++|+|++++++++. ..++|+++.++++..+
T Consensus       268 ll~~~~--v~lvl~GH~H~~~~~~~~~~~g--~~-~~~i~~gs~~~---~p~~y~il~i~~~~-~~~~~~~~~l~v~~~~  338 (443)
T 2xmo_A          268 ALTEGA--MDFSLSGHIHTQNIRSAKSTDG--KE-ITDIVTNALSV---FPHKYGNITYSAKN-KNFTYQSQKLDMEAWA  338 (443)
T ss_dssp             HHHHTT--CCEEEECSSCSCEEEEEECTTS--CE-EEEEECCCTTS---TTCEEEEEEEETTT-TEEEEEEEECCHHHHH
T ss_pred             HHHHcC--CeEEEECCcccCchhhcccCCC--Cc-eEEEEcCcccc---CCCCeEEEEEeCCC-ceEEEEEEEEeHHHHH
Confidence            999994  8999999999999876543332  22 44556677654   46999999999875 3578999999998654


Q ss_pred             C
Q psy16143        152 N  152 (388)
Q Consensus       152 ~  152 (388)
                      .
T Consensus       339 ~  339 (443)
T 2xmo_A          339 K  339 (443)
T ss_dssp             H
T ss_pred             H
Confidence            3
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Back     alignment and structure
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Back     alignment and structure
>3tgh_A Glideosome-associated protein 50; phosphatase fold, NOT A phosphatase, motor protein, structur protein, membrane protein; 1.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A* Back     alignment and structure
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1 Back     alignment and structure
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A* Back     alignment and structure
>2yeq_A Apased, PHOD, alkaline phosphatase D; hydrolase, phosphodiesterase; HET: PE5; 1.93A {Bacillus subtilis} Back     alignment and structure
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A Back     alignment and structure
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7 Back     alignment and structure
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6 Back     alignment and structure
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6 Back     alignment and structure
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A Back     alignment and structure
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Back     alignment and structure
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A Back     alignment and structure
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7 Back     alignment and structure
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A Back     alignment and structure
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A Back     alignment and structure
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes} Back     alignment and structure
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A* Back     alignment and structure
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8 Back     alignment and structure
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0 Back     alignment and structure
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Back     alignment and structure
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Back     alignment and structure
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A* Back     alignment and structure
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B* Back     alignment and structure
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A* Back     alignment and structure
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C Back     alignment and structure
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 388
d2nxfa1320 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homo 2e-06
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Length = 320 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: ADPRibase-Mn-like
domain: Uncharacterized C17orf48 homolog zgc:64213
species: Zebrafish (Danio rerio) [TaxId: 7955]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 18/145 (12%), Positives = 36/145 (24%), Gaps = 14/145 (9%)

Query: 5   DLKLLFWENHLVVKWNVLYPVDPNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDTMQV 64
           DL L      L  ++          QL WL + L  ++   E+V I SH+P        +
Sbjct: 178 DLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPI 237

Query: 65  F----QREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNSSRATNVAY-NGGSITSYY 119
                      ++     ++     GH H                    +     +    
Sbjct: 238 CLAWNHEAVLSVLRSH-QSVLCFIAGHDHDGGRCTDSS--------GAQHITLEGVIETP 288

Query: 120 NVNPNYRLYKVARGTWEVTDFDSYT 144
             +  +    +      +       
Sbjct: 289 PHSHAFATAYLYEDRMVMKGRGRVE 313

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
d2nxfa1320 Uncharacterized C17orf48 homolog zgc:64213 {Zebraf 99.29
d3d03a1271 Glycerophosphodiesterase GpdQ {Enterobacter aeroge 98.81
d2hy1a1256 Rv0805 cyclic nucleotide phosphodiesterase {Mycoba 98.7
d2qfra2312 Plant purple acid phosphatase, catalytic domain {K 98.33
d1utea_302 Mammalian purple acid phosphatase {Pig (Sus scrofa 98.16
d2hy1a1 256 Rv0805 cyclic nucleotide phosphodiesterase {Mycoba 96.26
d1uf3a_228 Hypothetical protein TT1561 {Thermus thermophilus 96.01
d2yvta1257 Uncharacterized protein Aq_1956 {Aquifex aeolicus 94.8
d2a22a1193 Vacuolar protein sorting 29, VPS29 {Cryptosporidiu 93.55
d3d03a1 271 Glycerophosphodiesterase GpdQ {Enterobacter aeroge 90.77
d1s3la_165 Putative phosphodiesterase MJ0936 {Methanococcus j 90.7
d2nxfa1 320 Uncharacterized C17orf48 homolog zgc:64213 {Zebraf 90.59
d1z2wa1182 Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus 90.09
d3ck2a1173 Uncharacterized protein SP1879 {Streptococcus pneu 87.5
d3c9fa2322 5'-nucleotidase (syn. UDP-sugar hydrolase), N-term 86.94
d1ceoa_340 Endoglucanase CelC {Clostridium thermocellum [TaxI 84.53
d2pb1a1394 Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) 84.15
d1h4pa_408 Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom 82.1
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: ADPRibase-Mn-like
domain: Uncharacterized C17orf48 homolog zgc:64213
species: Zebrafish (Danio rerio) [TaxId: 7955]

Probab=99.29  E-value=8.9e-12  Score=113.86  Aligned_cols=106  Identities=14%  Similarity=0.191  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHHHHHHHHCCCeEEEEEccCCCCCCc----hHHHHHHHHHHHHhhccceeEEEeecccCCceeeeecCCCC
Q psy16143         27 PNDQLSWLASTLLEAEKSNEKVHILSHIPPGSEDT----MQVFQREYRKIINRFEYTIAAEFNGHTHYEDITIFYDKNNS  102 (388)
Q Consensus        27 P~~Ql~WL~~~L~~A~~~~~kV~IigHiPpg~~d~----~~~~~~~y~~iv~ry~~~I~~~ffGH~H~D~f~i~~~~~~~  102 (388)
                      +..||+||+++|+++++++++|+|++|+|+.....    .....+++.+++.+|.+ |.+.|+||+|...+..  ...+ 
T Consensus       200 ~~~Ql~WL~~~L~~~~~~~~~viv~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~-V~~v~~GH~H~~~~~~--~~~g-  275 (320)
T d2nxfa1         200 SEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQS-VLCFIAGHDHDGGRCT--DSSG-  275 (320)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCEEEEEESSCCCTTSSCGGGSCTTHHHHHHHHHTCTT-EEEEEECSCTTCEEEE--CTTS-
T ss_pred             cHHHHHHHHHHHHhhhhcCCceEEEECCCCccCCCCCccchhhHHHHHHHHHhCCC-eeEEEeCCcCCcCeee--ccCC-
Confidence            56899999999999999999999999999876421    11224679999999975 7899999999976543  2222 


Q ss_pred             CccceeeeecccccccCCCCCceEEEEEeCCeeEEeeE
Q psy16143        103 SRATNVAYNGGSITSYYNVNPNYRLYKVARGTWEVTDF  140 (388)
Q Consensus       103 ~~~~~~~~~~Psvtp~~~~NP~fRvy~~d~~t~~v~d~  140 (388)
                         + ..+..||+......+++|+++++.++...|..+
T Consensus       276 ---~-~~i~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~  309 (320)
T d2nxfa1         276 ---A-QHITLEGVIETPPHSHAFATAYLYEDRMVMKGR  309 (320)
T ss_dssp             ---C-EEEECCCGGGCCTTSCEEEEEEECSSEEEEEEE
T ss_pred             ---C-EEEECCeeecCCCCCCCEEEEEEECCEEEEEEe
Confidence               1 223457776666778999999999998777655
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2qfra2 d.159.1.1 (A:121-432) Plant purple acid phosphatase, catalytic domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1utea_ d.159.1.1 (A:) Mammalian purple acid phosphatase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2hy1a1 d.159.1.11 (A:10-265) Rv0805 cyclic nucleotide phosphodiesterase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]} Back     information, alignment and structure
>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ {Enterobacter aerogenes [TaxId: 548]} Back     information, alignment and structure
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2nxfa1 d.159.1.12 (A:3-322) Uncharacterized C17orf48 homolog zgc:64213 {Zebrafish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain {Candida albicans [TaxId: 5476]} Back     information, alignment and structure
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure