Psyllid ID: psy1616

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------
MREVKIRKLCLNICVGESGDRLTRAAKTKAVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQTKMLFRR
cccccEEEEEEEEEEccccccHHHHHHcccccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHccccEEEccEEEccccccccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEcccccEEEccccccccccEEEEEEEEEEcccccEEEEcccccccccccccccHHHHHHHHHHHccccc
cccEEEEEEEEEEEEcccccHHHHHHHHHccccccccHHHHHHHHHcccccccEEEEEEEEEEcccccHHHHHHHHHHHHHcccccEEEcccccccHHHHcccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHcccEHHHHHHHHccccccccHHHcccccccccccHHHHccccccccccEEEccEEEEEEcccccEHHHHHHHHccccccccccHHHHHHHHHHHccccc
MREVKIRKLCLNICVGESGDRLTRAAktkavdpakpvakkgkkdksknvMREVKIRKLCLNICVGESGDRLTRAAKVLEQLtgqqpvfskarytrskgrrnpgerassfmKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSlclhhsgnfgfgIQEHIDlgikydpsigiygLDFYVVlgrpgfnvahrrrktgivgfqhrlTKEDAMKWFQTKMLFRR
mrevkirklclnicvgesgdrltraaktkavdpakpvakkgkkdksknvmrevkirklclnicvgesGDRLTRAAKVleqltgqqpvfskarytrskgrrnpgerassfmkPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFnvahrrrktgivgfqhrltkedamkwfqtkmlfrr
MREVKIRKLCLNICVGESGDRLTRaaktkavdpakpvakkgkkdkskNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERASSFMKPLVVLALPGMYLFykynqykqqqqeqnrrkVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQTKMLFRR
****KIRKLCLNICVGE*********************************REVKIRKLCLNICVGESGDRLTRAAKVLEQL***************************FMKPLVVLALPGMYLFYKYNQY*********************QKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQTKML***
**EVKIRKLCLNICVGESGDR*************************KNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNV***************LTKEDAMKWFQTKMLF**
MREVKIRKLCLNICVGESGDRL*************************NVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKAR*************ASSFMKPLVVLALPGMYLFYKYNQY**************RELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQTKMLFRR
*REVKIRKLCLNICVGESGDRLTRAAKTKAVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQTKMLFRR
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MREVKIRKLCLNICVGESGDRLTRAAKTKAVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTRSKGRRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQxxxxxxxxxxxxxxxxxxxxxxxxxxxxCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDAMKWFQTKMLFRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query237 2.2.26 [Sep-21-2011]
P46222184 60S ribosomal protein L11 yes N/A 0.713 0.918 0.636 4e-57
P62914178 60S ribosomal protein L11 yes N/A 0.670 0.893 0.590 5e-50
Q9CXW4178 60S ribosomal protein L11 yes N/A 0.670 0.893 0.590 5e-50
P62913178 60S ribosomal protein L11 yes N/A 0.670 0.893 0.590 5e-50
Q6QMZ8178 60S ribosomal protein L11 N/A N/A 0.670 0.893 0.590 5e-50
Q3T087178 60S ribosomal protein L11 yes N/A 0.670 0.893 0.590 5e-50
Q90YV7178 60S ribosomal protein L11 N/A N/A 0.683 0.910 0.591 6e-50
Q29205178 60S ribosomal protein L11 yes N/A 0.670 0.893 0.590 6e-50
Q5RC11178 60S ribosomal protein L11 yes N/A 0.670 0.893 0.585 2e-49
P16168202 60S ribosomal protein L11 yes N/A 0.696 0.816 0.513 5e-46
>sp|P46222|RL11_DROME 60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2 Back     alignment and function desciption
 Score =  221 bits (562), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 126/198 (63%), Positives = 138/198 (69%), Gaps = 29/198 (14%)

Query: 37  VAKKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-R 95
           V KK K+D +KN MR++ IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT R
Sbjct: 4   VTKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVR 63

Query: 96  SKG-RRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKI 154
           S G RRN         K  V   + G          K ++  +   KV E EL   N   
Sbjct: 64  SFGIRRNE--------KIAVHCTVRGA---------KAEEILERGLKVREYELRREN--- 103

Query: 155 HKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIV 214
                     +GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPG+NV HR+RK+G V
Sbjct: 104 -------FSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTV 156

Query: 215 GFQHRLTKEDAMKWFQTK 232
           GFQHRLTKEDAMKWFQ K
Sbjct: 157 GFQHRLTKEDAMKWFQQK 174
Binds to 5S ribosomal RNA.
Drosophila melanogaster (taxid: 7227)
>sp|P62914|RL11_RAT 60S ribosomal protein L11 OS=Rattus norvegicus GN=Rpl11 PE=1 SV=2 Back     alignment and function description
>sp|Q9CXW4|RL11_MOUSE 60S ribosomal protein L11 OS=Mus musculus GN=Rpl11 PE=1 SV=4 Back     alignment and function description
>sp|P62913|RL11_HUMAN 60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2 Back     alignment and function description
>sp|Q6QMZ8|RL11_CHILA 60S ribosomal protein L11 OS=Chinchilla lanigera GN=RPL11 PE=2 SV=3 Back     alignment and function description
>sp|Q3T087|RL11_BOVIN 60S ribosomal protein L11 OS=Bos taurus GN=RPL11 PE=2 SV=3 Back     alignment and function description
>sp|Q90YV7|RL11_ICTPU 60S ribosomal protein L11 OS=Ictalurus punctatus GN=rpl11 PE=2 SV=3 Back     alignment and function description
>sp|Q29205|RL11_PIG 60S ribosomal protein L11 OS=Sus scrofa GN=RPL11 PE=2 SV=3 Back     alignment and function description
>sp|Q5RC11|RL11_PONAB 60S ribosomal protein L11 OS=Pongo abelii GN=RPL11 PE=2 SV=3 Back     alignment and function description
>sp|P16168|RL11_DICDI 60S ribosomal protein L11 OS=Dictyostelium discoideum GN=rpl11 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
149898923195 ribosomal protein L11 [Triatoma infestan 0.746 0.907 0.655 7e-60
156544263195 PREDICTED: 60S ribosomal protein L11-lik 0.729 0.887 0.663 3e-59
307186122199 60S ribosomal protein L11 [Camponotus fl 0.687 0.819 0.682 5e-58
383853686201 PREDICTED: 60S ribosomal protein L11-lik 0.687 0.810 0.682 6e-58
110768336199 PREDICTED: 60S ribosomal protein L11-lik 0.708 0.844 0.664 6e-58
340710106191 PREDICTED: 60S ribosomal protein L11-lik 0.687 0.853 0.682 6e-58
322787060197 hypothetical protein SINV_13287 [Solenop 0.687 0.827 0.682 1e-57
307205689192 60S ribosomal protein L11 [Harpegnathos 0.683 0.843 0.680 1e-57
332030137197 60S ribosomal protein L11 [Acromyrmex ec 0.683 0.822 0.675 2e-57
91088517190 PREDICTED: similar to ribosomal protein 0.717 0.894 0.653 5e-57
>gi|149898923|gb|ABR27976.1| ribosomal protein L11 [Triatoma infestans] Back     alignment and taxonomy information
 Score =  236 bits (601), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 135/206 (65%), Positives = 146/206 (70%), Gaps = 29/206 (14%)

Query: 29  KAVDPAKPVAKKGKKDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVF 88
           K +  AK  +KK  KDKSKN+MR+V+IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVF
Sbjct: 7   KKMAQAKKPSKKEPKDKSKNIMRDVRIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVF 66

Query: 89  SKARYT-RSKG-RRNPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERE 146
           SKARYT RS G RRN         K  V   + G          K ++  +   KV E E
Sbjct: 67  SKARYTVRSFGIRRNE--------KIAVHCTVRGA---------KAEEILERGLKVREYE 109

Query: 147 LDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAH 206
           L   N             +GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAH
Sbjct: 110 LRKDN----------FSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAH 159

Query: 207 RRRKTGIVGFQHRLTKEDAMKWFQTK 232
           RRRKTG+VGFQHRLTKEDAMKWFQ K
Sbjct: 160 RRRKTGVVGFQHRLTKEDAMKWFQQK 185

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156544263|ref|XP_001607270.1| PREDICTED: 60S ribosomal protein L11-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307186122|gb|EFN71847.1| 60S ribosomal protein L11 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383853686|ref|XP_003702353.1| PREDICTED: 60S ribosomal protein L11-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|110768336|ref|XP_001121930.1| PREDICTED: 60S ribosomal protein L11-like [Apis mellifera] gi|380026785|ref|XP_003697123.1| PREDICTED: 60S ribosomal protein L11-like [Apis florea] Back     alignment and taxonomy information
>gi|340710106|ref|XP_003393637.1| PREDICTED: 60S ribosomal protein L11-like [Bombus terrestris] gi|350413896|ref|XP_003490145.1| PREDICTED: 60S ribosomal protein L11-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322787060|gb|EFZ13284.1| hypothetical protein SINV_13287 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307205689|gb|EFN83951.1| 60S ribosomal protein L11 [Harpegnathos saltator] gi|307205690|gb|EFN83952.1| 60S ribosomal protein L11 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332030137|gb|EGI69931.1| 60S ribosomal protein L11 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|91088517|ref|XP_971759.1| PREDICTED: similar to ribosomal protein L11e [Tribolium castaneum] gi|270011720|gb|EFA08168.1| hypothetical protein TcasGA2_TC005792 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query237
FB|FBgn0013325184 RpL11 "Ribosomal protein L11" 0.286 0.369 0.897 3.3e-53
UNIPROTKB|Q5VVC8174 RPL11 "60S ribosomal protein L 0.291 0.396 0.753 9.8e-50
UNIPROTKB|Q3T087178 RPL11 "60S ribosomal protein L 0.286 0.382 0.764 1.3e-49
UNIPROTKB|E2R9G7178 RPL11 "Uncharacterized protein 0.286 0.382 0.764 1.3e-49
UNIPROTKB|P62913178 RPL11 "60S ribosomal protein L 0.286 0.382 0.764 1.3e-49
UNIPROTKB|I3LD74178 RPL11 "60S ribosomal protein L 0.286 0.382 0.764 1.3e-49
UNIPROTKB|Q29205178 RPL11 "60S ribosomal protein L 0.286 0.382 0.764 1.3e-49
UNIPROTKB|Q6QMZ8178 RPL11 "60S ribosomal protein L 0.286 0.382 0.764 1.3e-49
MGI|MGI:1914275178 Rpl11 "ribosomal protein L11" 0.286 0.382 0.764 1.3e-49
RGD|1308681178 Rpl11 "ribosomal protein L11" 0.286 0.382 0.764 1.3e-49
FB|FBgn0013325 RpL11 "Ribosomal protein L11" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 339 (124.4 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
 Identities = 61/68 (89%), Positives = 65/68 (95%)

Query:   165 SGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKED 224
             +GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPG+NV HR+RK+G VGFQHRLTKED
Sbjct:   107 TGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGYNVNHRKRKSGTVGFQHRLTKED 166

Query:   225 AMKWFQTK 232
             AMKWFQ K
Sbjct:   167 AMKWFQQK 174
GO:0022625 "cytosolic large ribosomal subunit" evidence=NAS
GO:0003735 "structural constituent of ribosome" evidence=IDA;NAS
GO:0006412 "translation" evidence=IEA;NAS
GO:0005840 "ribosome" evidence=IDA;NAS
GO:0005515 "protein binding" evidence=IPI
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0051298 "centrosome duplication" evidence=IMP
UNIPROTKB|Q5VVC8 RPL11 "60S ribosomal protein L11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T087 RPL11 "60S ribosomal protein L11" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9G7 RPL11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62913 RPL11 "60S ribosomal protein L11" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LD74 RPL11 "60S ribosomal protein L11" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q29205 RPL11 "60S ribosomal protein L11" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6QMZ8 RPL11 "60S ribosomal protein L11" [Chinchilla lanigera (taxid:34839)] Back     alignment and assigned GO terms
MGI|MGI:1914275 Rpl11 "ribosomal protein L11" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308681 Rpl11 "ribosomal protein L11" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UX93RL5_SULSONo assigned EC number0.36890.67080.8736yesN/A
A8MB19RL5_CALMQNo assigned EC number0.31520.73830.8883yesN/A
Q2NFX0RL5_METSTNo assigned EC number0.33330.65820.9285yesN/A
P41202RL5_SULACNo assigned EC number0.34750.67930.9044yesN/A
Q8TW17RL5_METKANo assigned EC number0.36260.69620.8870yesN/A
Q758S7RL11_ASHGONo assigned EC number0.51070.67930.9252yesN/A
A9A9Q1RL5_METM6No assigned EC number0.35100.69620.9116yesN/A
Q6LXE0RL5_METMPNo assigned EC number0.3250.64550.8453yesN/A
P54040RL5_METJANo assigned EC number0.36220.63710.7947yesN/A
O59431RL5_PYRHONo assigned EC number0.39570.67930.8563yesN/A
P62913RL11_HUMANNo assigned EC number0.59040.67080.8932yesN/A
P62914RL11_RATNo assigned EC number0.59040.67080.8932yesN/A
Q3T087RL11_BOVINNo assigned EC number0.59040.67080.8932yesN/A
Q3E757RL11B_YEASTNo assigned EC number0.50.68770.9367yesN/A
P48157RL11_LEIMANo assigned EC number0.51570.67930.8563yesN/A
Q9CXW4RL11_MOUSENo assigned EC number0.59040.67080.8932yesN/A
Q12ZT8RL5_METBUNo assigned EC number0.31180.67510.9467yesN/A
A6VGZ8RL5_METM7No assigned EC number0.34570.69620.9116yesN/A
Q29205RL11_PIGNo assigned EC number0.59040.67080.8932yesN/A
Q9V1U9RL5_PYRABNo assigned EC number0.39570.67930.8563yesN/A
Q6FTK4RL11_CANGANo assigned EC number0.50530.67930.9252yesN/A
P46222RL11_DROMENo assigned EC number0.63630.71300.9184yesN/A
P16168RL11_DICDINo assigned EC number0.51380.69620.8168yesN/A
P0C0W9RL11A_YEASTNo assigned EC number0.50.68770.9367yesN/A
A4FWA8RL5_METM5No assigned EC number0.34570.69620.9116yesN/A
Q10157RL11_SCHPONo assigned EC number0.50260.69190.9425yesN/A
A5UL75RL5_METS3No assigned EC number0.34590.66240.9235yesN/A
P14029RL5_METVANo assigned EC number0.34040.69620.9116yesN/A
Q5RC11RL11_PONABNo assigned EC number0.58510.67080.8932yesN/A
A6UWV1RL5_META3No assigned EC number0.30800.63710.8342yesN/A
Q8SSG9RL11_ENCCUNo assigned EC number0.45550.65400.9393yesN/A
P42794RL112_ARATHNo assigned EC number0.55780.67930.8846yesN/A
P42795RL111_ARATHNo assigned EC number0.55780.67930.8846yesN/A
Q8U012RL5_PYRFUNo assigned EC number0.39570.67930.8655yesN/A
Q74N79RL5_NANEQNo assigned EC number0.38370.67080.9408yesN/A
Q9YF87RL5_AERPENo assigned EC number0.36260.65400.8072yesN/A
Q5JJG1RL5_PYRKONo assigned EC number0.38580.66660.8633yesN/A
Q0DK10RL11_ORYSJNo assigned EC number0.56310.67930.8846yesN/A
A6UQ57RL5_METVSNo assigned EC number0.34040.69620.9116yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
PTZ00156172 PTZ00156, PTZ00156, 60S ribosomal protein L11; Pro 5e-73
PRK04219177 PRK04219, rpl5p, 50S ribosomal protein L5P; Review 7e-46
COG0094180 COG0094, RplE, Ribosomal protein L5 [Translation, 3e-33
pfam0067395 pfam00673, Ribosomal_L5_C, ribosomal L5P family C- 3e-15
pfam0028156 pfam00281, Ribosomal_L5, Ribosomal protein L5 3e-12
PRK00010179 PRK00010, rplE, 50S ribosomal protein L5; Validate 1e-05
>gnl|CDD|185485 PTZ00156, PTZ00156, 60S ribosomal protein L11; Provisional Back     alignment and domain information 
 Score =  219 bits (560), Expect = 5e-73
 Identities = 109/194 (56%), Positives = 128/194 (65%), Gaps = 33/194 (17%)

Query: 43  KDKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RR 100
           + K +N MR+++I KL LNICVGESGDRLTRAAKVLEQLTGQ+PVFSKARYT RS G RR
Sbjct: 1   ESKKENPMRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRR 60

Query: 101 NPGERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRR--KVTERELDHLNQKIHKAQ 158
           N  E+ +        + + G            + +E   R  KV E EL          +
Sbjct: 61  N--EKIACH------VTVRG-----------DKAEEILERGLKVKEFEL----------K 91

Query: 159 SLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQH 218
                 +GNFGFGIQEHIDLGIKYDPS GIYG+DFYVVLGRPGF VA R+RK   VG  H
Sbjct: 92  KRNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLGRPGFRVARRKRKQSKVGKSH 151

Query: 219 RLTKEDAMKWFQTK 232
           R+TKE+AMKWF+T 
Sbjct: 152 RVTKEEAMKWFKTT 165

Length = 172
>gnl|CDD|235259 PRK04219, rpl5p, 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>gnl|CDD|223172 COG0094, RplE, Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|201383 pfam00673, Ribosomal_L5_C, ribosomal L5P family C-terminus Back     alignment and domain information
>gnl|CDD|109342 pfam00281, Ribosomal_L5, Ribosomal protein L5 Back     alignment and domain information
>gnl|CDD|178791 PRK00010, rplE, 50S ribosomal protein L5; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 237
PTZ00156172 60S ribosomal protein L11; Provisional 100.0
PRK04219177 rpl5p 50S ribosomal protein L5P; Reviewed 100.0
KOG0397|consensus176 100.0
COG0094180 RplE Ribosomal protein L5 [Translation, ribosomal 100.0
PRK00010179 rplE 50S ribosomal protein L5; Validated 100.0
CHL00078181 rpl5 ribosomal protein L5 100.0
KOG0398|consensus278 100.0
PF0067395 Ribosomal_L5_C: ribosomal L5P family C-terminus; I 99.95
PF0028156 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR0 99.76
KOG0397|consensus176 99.5
PF0028156 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR0 98.92
COG0094180 RplE Ribosomal protein L5 [Translation, ribosomal 98.8
PTZ00156172 60S ribosomal protein L11; Provisional 98.76
PRK04219177 rpl5p 50S ribosomal protein L5P; Reviewed 98.42
PRK00010179 rplE 50S ribosomal protein L5; Validated 98.05
CHL00078181 rpl5 ribosomal protein L5 97.98
KOG0398|consensus278 92.51
>PTZ00156 60S ribosomal protein L11; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.7e-61  Score=409.43  Aligned_cols=164  Identities=61%  Similarity=0.953  Sum_probs=160.1

Q ss_pred             ccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCchhc
Q psy1616          46 SKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGMYLF  124 (237)
Q Consensus        46 y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~~~~  124 (237)
                      .+|||++|+|+|||||+|+|++++.|..|..+|++||||+|++|+||+| ++||||+|       |||||+|||||+   
T Consensus         4 ~~n~m~~PkI~KIvvN~gvGe~~~~L~~a~~~L~~ITGQkPv~tkAKksia~FkiRkG-------~pIG~kVTLRg~---   73 (172)
T PTZ00156          4 KENPMRKIRIEKLVLNICVGESGDRLTRAAKVLEQLTGQKPVFSKARYTVRSFGIRRN-------EKIACHVTVRGD---   73 (172)
T ss_pred             cCCCccCceeEEEEEEcCcCchHHHHHHHHHHHHHHcCCceEEEEhhcccccccccCC-------CEEEEEEEEchH---
Confidence            3799999999999999999999999999999999999999999999999 99999999       999999999999   


Q ss_pred             ccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeecccccccccccCCCCCccceeEEEEcCCcceee
Q psy1616         125 YKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNV  204 (237)
Q Consensus       125 ~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~fei~yd~~~~i~G~di~ivt~~~G~~v  204 (237)
                            +||+||++|+     ++++    |+ ++.++||.+|||+|||+||++||++|||.++++||||+|+++||||||
T Consensus        74 ------~m~eFLdrli-----rirD----f~-l~~~sFD~~GN~sfGI~e~i~fei~yD~~~~i~GmdI~ivl~rpG~rv  137 (172)
T PTZ00156         74 ------KAEEILERGL-----KVKE----FE-LKKRNFSDTGNFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLGRPGFRV  137 (172)
T ss_pred             ------HHHHHHHHHH-----hhhc----cc-ccCcccCCCcccccCCchheeeceecCcccCcccCceEEEEeCCccee
Confidence                  9999999999     7888    88 999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCcccChHHHHHHHHHhhCc
Q psy1616         205 AHRRRKTGIVGFQHRLTKEDAMKWFQTKMLF  235 (237)
Q Consensus       205 ~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~~  235 (237)
                      ++|++++++||.+|||++|||++||+++|.-
T Consensus       138 ~~R~~~~~~i~~~hrv~~eea~~~~~~~~~v  168 (172)
T PTZ00156        138 ARRKRKQSKVGKSHRVTKEEAMKWFKTTFDG  168 (172)
T ss_pred             eecccccccCCCCceeCHHHHHHHHHhhcCE
Confidence            9999999999999999999999999999863

>PRK04219 rpl5p 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>KOG0397|consensus Back     alignment and domain information
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK00010 rplE 50S ribosomal protein L5; Validated Back     alignment and domain information
>CHL00078 rpl5 ribosomal protein L5 Back     alignment and domain information
>KOG0398|consensus Back     alignment and domain information
>PF00673 Ribosomal_L5_C: ribosomal L5P family C-terminus; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG0397|consensus Back     alignment and domain information
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>COG0094 RplE Ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PTZ00156 60S ribosomal protein L11; Provisional Back     alignment and domain information
>PRK04219 rpl5p 50S ribosomal protein L5P; Reviewed Back     alignment and domain information
>PRK00010 rplE 50S ribosomal protein L5; Validated Back     alignment and domain information
>CHL00078 rpl5 ribosomal protein L5 Back     alignment and domain information
>KOG0398|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
2zkr_d178 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-49
3izr_E180 Localization Of The Large Subunit Ribosomal Protein 2e-41
3zf7_L194 High-resolution Cryo-electron Microscopy Structure 1e-40
1s1i_J173 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-39
3izs_E174 Localization Of The Large Subunit Ribosomal Protein 2e-39
2noq_H165 Structure Of Ribosome-Bound Cricket Paralysis Virus 3e-39
4a17_D172 T.Thermophila 60s Ribosomal Subunit In Complex With 5e-34
3jyw_J151 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-33
3j21_E186 Promiscuous Behavior Of Proteins In Archaeal Riboso 1e-21
3ow2_D165 Crystal Structure Of Enhanced Macrolide Bound To 50 9e-16
1s72_D177 Refined Crystal Structure Of The Haloarcula Marismo 9e-16
1ffk_D176 Crystal Structure Of The Large Ribosomal Subunit Fr 1e-15
>pdb|2ZKR|DD Chain d, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 178 Back     alignment and structure 
Iteration: 1

 Score =  191 bits (486), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 124/187 (66%), Gaps = 29/187 (15%)
Query: 48  NVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKG-RRNPGER 105
           N MRE++IRKLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYT RS G RRN    
Sbjct: 10  NPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNE--- 66
Query: 106 ASSFMKPLVVLALPGMYLFXXXXXXXXXXXXXXXXXVTERELDHLNQKIHKAQSLCLHHS 165
                K  V   + G                     V E EL   N             +
Sbjct: 67  -----KIAVHCTVRGA---------KAEEILEKGLKVREYELRKNN----------FSDT 102
Query: 166 GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
           GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGF++A ++R+TG +G +HR++KE+A
Sbjct: 103 GNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEA 162
Query: 226 MKWFQTK 232
           M+WFQ K
Sbjct: 163 MRWFQQK 169
>pdb|3IZR|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 180 Back     alignment and structure
>pdb|3ZF7|L Chain L, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 194 Back     alignment and structure
>pdb|1S1I|J Chain J, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 173 Back     alignment and structure
>pdb|3IZS|E Chain E, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 174 Back     alignment and structure
>pdb|2NOQ|H Chain H, Structure Of Ribosome-Bound Cricket Paralysis Virus Ires Rna Length = 165 Back     alignment and structure
>pdb|4A17|D Chain D, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 172 Back     alignment and structure
>pdb|3JYW|J Chain J, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 151 Back     alignment and structure
>pdb|3J21|E Chain E, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 186 Back     alignment and structure
>pdb|3OW2|D Chain D, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 165 Back     alignment and structure
>pdb|1S72|D Chain D, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 177 Back     alignment and structure
>pdb|1FFK|D Chain D, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 176 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query237
4a17_D172 L21, RPL11, 60S ribosomal protein L11; eukaryotic 4e-68
2zkr_d178 60S ribosomal protein L11; protein-RNA complex, 60 6e-67
3iz5_e244 60S ribosomal protein L7 (L30P); eukaryotic riboso 2e-66
1vq8_D177 50S ribosomal protein L5P; ribosome 50S, protein-p 2e-59
3r8s_F177 50S ribosomal protein L5; protein biosynthesis, RN 6e-06
1iq4_A179 50S ribosomal protein L5; rRNA-binding, RNP motif, 9e-06
1mji_A182 50S ribosomal protein L5; ribosomal protein - 5S r 1e-05
3bbo_H220 Ribosomal protein L5; large ribosomal subunit, spi 3e-05
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D Length = 172 Back     alignment and structure
 Score =  206 bits (526), Expect = 4e-68
 Identities = 87/200 (43%), Positives = 116/200 (58%), Gaps = 47/200 (23%)

Query: 44  DKSKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RS-KGRRN 101
           DK +N MREVKI KL +N CVGESGD+LT+AAKVL+ L+GQ+PVFS+ARYT RS   +RN
Sbjct: 3   DKKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRN 62

Query: 102 P---------GERASSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQ 152
                     G++A   +   + +                        ++ ++   +   
Sbjct: 63  EKMAVHVTIRGDKARDILTRGLKVKEM---------------------ELRKKNFSN--- 98

Query: 153 KIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTG 212
                       +GNFGFGIQEHIDLG+KYDPS GI+G+DFYVVL RPG  VA RRR T 
Sbjct: 99  ------------TGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATS 146

Query: 213 IVGFQHRLTKEDAMKWFQTK 232
            VG    ++KE+ + WF+T+
Sbjct: 147 RVGNNQMISKEECINWFKTE 166
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 178 Back     alignment and structure
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Length = 177 Back     alignment and structure
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F 3orb_F* ... Length = 177 Back     alignment and structure
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1 Length = 179 Back     alignment and structure
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Length = 182 Back     alignment and structure
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Length = 220 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
4a17_D172 L21, RPL11, 60S ribosomal protein L11; eukaryotic 100.0
3iz5_E180 60S ribosomal protein L11 (L5P); eukaryotic riboso 100.0
3j21_E186 50S ribosomal protein L5P; archaea, archaeal, KINK 100.0
1vq8_D177 50S ribosomal protein L5P; ribosome 50S, protein-p 100.0
2zkr_d178 60S ribosomal protein L11; protein-RNA complex, 60 100.0
1iq4_A179 50S ribosomal protein L5; rRNA-binding, RNP motif, 100.0
3r8s_F177 50S ribosomal protein L5; protein biosynthesis, RN 100.0
1mji_A182 50S ribosomal protein L5; ribosomal protein - 5S r 100.0
3bbo_H220 Ribosomal protein L5; large ribosomal subunit, spi 100.0
4a17_D172 L21, RPL11, 60S ribosomal protein L11; eukaryotic 98.84
3iz5_E180 60S ribosomal protein L11 (L5P); eukaryotic riboso 98.79
3j21_E186 50S ribosomal protein L5P; archaea, archaeal, KINK 98.63
1vq8_D177 50S ribosomal protein L5P; ribosome 50S, protein-p 98.58
2zkr_d178 60S ribosomal protein L11; protein-RNA complex, 60 98.53
3r8s_F177 50S ribosomal protein L5; protein biosynthesis, RN 98.46
1iq4_A179 50S ribosomal protein L5; rRNA-binding, RNP motif, 98.33
1mji_A182 50S ribosomal protein L5; ribosomal protein - 5S r 98.3
3bbo_H220 Ribosomal protein L5; large ribosomal subunit, spi 98.27
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D Back     alignment and structure
Probab=100.00  E-value=1.3e-64  Score=430.91  Aligned_cols=163  Identities=53%  Similarity=0.876  Sum_probs=159.8

Q ss_pred             ccCcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCchhc
Q psy1616          46 SKNVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGMYLF  124 (237)
Q Consensus        46 y~N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~~~~  124 (237)
                      .+|||++|+|+|||||+|||||+|.|+.|+++|++||||+|++|+||+| ++||||+|       |||||+|||||+   
T Consensus         5 ~~n~m~vPkI~KIvlN~gvgea~~~L~~A~~~L~~ITGQkPv~tkAKksi~~FkiR~g-------~pIG~kVTLRG~---   74 (172)
T 4a17_D            5 KENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRN-------EKMAVHVTIRGD---   74 (172)
T ss_dssp             CCCGGGCCEEEEEEEEEECCCSSHHHHHHHHHHHHHHSSCCEEEEECSCBTTTTBCSS-------EEEEEEEEECHH---
T ss_pred             cCCcccCcEEEEEEEEcCcHHHHHHHHHHHHHHHHccCCccEEEEeccccccccccCC-------CEEEEEEEEccH---
Confidence            5799999999999999999999999999999999999999999999999 99999999       999999999999   


Q ss_pred             ccchHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeecccccccccccCCCCCccceeEEEEcCCcceee
Q psy1616         125 YKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNV  204 (237)
Q Consensus       125 ~~~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~fei~yd~~~~i~G~di~ivt~~~G~~v  204 (237)
                            +||+||++|+     ++++    |+ ++.++||.+|||+|||+||++||++|||.++++||||+|||+||||||
T Consensus        75 ------~m~eFL~kll-----rird----f~-l~~~sFD~~GN~sfGi~e~i~Fei~yD~~~~i~GmdI~ivt~rpG~rv  138 (172)
T 4a17_D           75 ------KARDILTRGL-----KVKE----ME-LRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRV  138 (172)
T ss_dssp             ------HHHHHHHHHH-----HHTT----TE-ECGGGBCTTSCEEEEECCGGGGTCCCCGGGCCCCEEEEEEEECGGGHH
T ss_pred             ------HHHHHHHHHH-----hhhh----cc-CCCcCcCCCceEEEccccccccccccccccCccceeEEEEEcCCccch
Confidence                  9999999999     7888    88 899999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCcccChHHHHHHHHHhhC
Q psy1616         205 AHRRRKTGIVGFQHRLTKEDAMKWFQTKML  234 (237)
Q Consensus       205 ~~r~~~~~~ig~~h~~~~~~~~~~~~~~~~  234 (237)
                      ++|++++++||.+||||+||||+|||++|.
T Consensus       139 ~~r~~~~~~i~~~hrv~keea~~~~~~~~~  168 (172)
T 4a17_D          139 ARRRRATSRVGNNQMISKEECINWFKTEFE  168 (172)
T ss_dssp             HHCSTTCCCCCTTTSCCHHHHHHHHHHHHC
T ss_pred             hhcccccCCCCccceeCHHHHHHHHHHhcC
Confidence            999999999999999999999999999985
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Back     alignment and structure
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1 Back     alignment and structure
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ... Back     alignment and structure
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Back     alignment and structure
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure
>4a17_D L21, RPL11, 60S ribosomal protein L11; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_D 4a1c_D 4a1e_D Back     alignment and structure
>3j21_E 50S ribosomal protein L5P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D* 1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D* 1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D* 1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ... Back     alignment and structure
>2zkr_d 60S ribosomal protein L11; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>3r8s_F 50S ribosomal protein L5; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_F* 3oat_F* 3ofc_F* 3ofz_F* 3ofr_F 3r8t_F 3i1n_F 1vs8_F 1vs6_F 1vt2_F 3i1p_F 3i1r_F 3i1t_F 3i20_F 3i22_F 3iyx_F 3iyy_F 3izt_G* 3izu_G* 3kcr_F ... Back     alignment and structure
>1iq4_A 50S ribosomal protein L5; rRNA-binding, RNP motif, RNA binding PROT; 1.80A {Geobacillus stearothermophilus} SCOP: d.77.1.1 Back     alignment and structure
>1mji_A 50S ribosomal protein L5; ribosomal protein - 5S rRNA complex, ribosome; 2.50A {Thermus thermophilus} SCOP: d.77.1.1 PDB: 2hgj_G 2hgq_G 2hgu_G 2j01_G 2j03_G 2jl6_G 2jl8_G 2v47_G 2v49_G 2wdi_G 2wdj_G 2wdl_G 2wdn_G 2wh2_G 2wh4_G 2wrj_G 2wrl_G 2wro_G 2wrr_G 2x9s_G ... Back     alignment and structure
>3bbo_H Ribosomal protein L5; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 237
d1vqod1165 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon 1e-35
d1iq4a_179 d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stear 5e-15
d1mjia_180 d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermo 2e-13
d1mjia_180 d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermo 0.001
d2zjrd1177 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococc 1e-12
d2gycd1177 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherich 5e-09
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 165 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  122 bits (307), Expect = 1e-35
 Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 30/187 (16%)

Query: 48  NVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERA 106
           + MRE +I K+ +++ +G  G  L  A  +L ++TGQ PV +KA+ T      R      
Sbjct: 2   HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIRE----- 56

Query: 107 SSFMKPLVVLALPGMYLFYKYNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSG 166
                        G  +  K     +        +  +  L        +  +     +G
Sbjct: 57  -------------GDPIGAKVTLRDE-----MAEEFLQTALPL-----AELATSQFDDTG 93

Query: 167 NFGFGIQEHID-LGIKYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGIVGFQHRLTKEDA 225
           NF FG++EH +    +YDPSIGIYGLD  V L RPG+ VA R + +  +  +HRL   DA
Sbjct: 94  NFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVAKRDKASRSIPTKHRLNPADA 153

Query: 226 MKWFQTK 232
           + + ++ 
Sbjct: 154 VAFIEST 160
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Length = 179 Back     information, alignment and structure
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Length = 180 Back     information, alignment and structure
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Length = 180 Back     information, alignment and structure
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Length = 177 Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Length = 177 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query237
d1vqod1165 Ribosomal protein L5 {Archaeon Haloarcula marismor 100.0
d1mjia_180 Ribosomal protein L5 {Thermus thermophilus [TaxId: 100.0
d1iq4a_179 Ribosomal protein L5 {Bacillus stearothermophilus 100.0
d2zjrd1177 Ribosomal protein L5 {Deinococcus radiodurans [Tax 100.0
d2gycd1177 Ribosomal protein L5 {Escherichia coli [TaxId: 562 100.0
d1vqod1165 Ribosomal protein L5 {Archaeon Haloarcula marismor 98.5
d1mjia_180 Ribosomal protein L5 {Thermus thermophilus [TaxId: 97.9
d1iq4a_179 Ribosomal protein L5 {Bacillus stearothermophilus 97.8
d2zjrd1177 Ribosomal protein L5 {Deinococcus radiodurans [Tax 97.69
d2gycd1177 Ribosomal protein L5 {Escherichia coli [TaxId: 562 97.63
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: RL5-like
superfamily: RL5-like
family: Ribosomal protein L5
domain: Ribosomal protein L5
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=5.9e-56  Score=373.44  Aligned_cols=160  Identities=33%  Similarity=0.528  Sum_probs=131.5

Q ss_pred             CcccccceeeEEEEeecchhHHHHHHHHHHHHHHhCCCcEEEeeecC-CCCCccCCCCCCCCCccceEEEEecCchhccc
Q psy1616          48 NVMREVKIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYT-RSKGRRNPGERASSFMKPLVVLALPGMYLFYK  126 (237)
Q Consensus        48 N~mqvpki~KI~ln~~vges~d~L~~a~~~Le~ITGQkPv~tkAK~s-~~fkiR~g~~~~~~~~~iG~kvTLRg~~~~~~  126 (237)
                      |||++|+|+|||||+|+|++++.|..|..+|++||||+|++++||+| ++||+|+|       ||+||+|||||+     
T Consensus         2 n~M~vPki~KIvvn~Gvg~a~~~l~~a~~~L~~ITGQkP~~t~AKksia~FkiRkg-------~piG~kVTLRg~-----   69 (165)
T d1vqod1           2 HEMREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREG-------DPIGAKVTLRDE-----   69 (165)
T ss_dssp             CTTTSCEEEEEEEEEECCC-----CTTHHHHHHHHSSCCEEEECCSCBTTTBCCSS-------SEEEEEEEECTH-----
T ss_pred             CCCCCceEEEEEEECCCChhHHHHHHHHHHHHHHhhCCccccccccccccccccCC-------CeEEEEEEEech-----
Confidence            89999999999999999999988999999999999999999999999 99999999       999999999999     


Q ss_pred             chHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccCCCCcceeEeeccccccc-ccccCCCCCccceeEEEEcCCcceeec
Q psy1616         127 YNQYKQQQQEQNRRKVTERELDHLNQKIHKAQSLCLHHSGNFGFGIQEHIDL-GIKYDPSIGIYGLDFYVVLGRPGFNVA  205 (237)
Q Consensus       127 ~~~~km~~FL~kl~~~v~p~i~~~~~~f~gi~~~~~d~~GN~~fGi~e~i~f-ei~yd~~~~i~G~di~ivt~~~G~~v~  205 (237)
                          +||+||++|+.+++|+.+            +||.+|||+|||+||++| |++|||.++++||||+|+|+|||++++
T Consensus        70 ----~m~~FL~rll~~~~~~~k------------~FD~~GN~sfGi~e~~~FPei~~d~~~~i~Gm~Itivt~~~~~~~a  133 (165)
T d1vqod1          70 ----MAEEFLQTALPLAELATS------------QFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGYRVA  133 (165)
T ss_dssp             ----HHHHHHHTTGGGSCCCST------------TBCSSSCEEEC--------------------CEEEEEEECGGGGGG
T ss_pred             ----hHHHHHHHHhccccCCcc------------ccCCceeEEeCchhheeccccccccccCcccceEEEEecCCChHHH
Confidence                999999999999987655            489999999999999999 999999999999999999999999999


Q ss_pred             ccccccCCCCCCcccChHHHHHHHHHhhCc
Q psy1616         206 HRRRKTGIVGFQHRLTKEDAMKWFQTKMLF  235 (237)
Q Consensus       206 ~r~~~~~~ig~~h~~~~~~~~~~~~~~~~~  235 (237)
                      +|+.+...+|+.|++++|||++||+++|.-
T Consensus       134 k~~~~~~~ip~~~~i~kee~~~~~~~~~~~  163 (165)
T d1vqod1         134 KRDKASRSIPTKHRLNPADAVAFIESTYDV  163 (165)
T ss_dssp             TSSTTCCCCCTTTSCCHHHHHHHHHTSSSC
T ss_pred             HHHHHhcCCCccccCCHHHHHHHHHhccCC
Confidence            999999999999999999999999999864
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1iq4a_ d.77.1.1 (A:) Ribosomal protein L5 {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycd1 d.77.1.1 (D:2-178) Ribosomal protein L5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure