Psyllid ID: psy16214

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470
Protein Sequence
ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYYQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccccccccccccHHHHHHHcccccccccccccEEEEcc
Coil and Loop (DISEMBL)
elsaekhkedgntqYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDdaklavsldprfskGLIRQIKCnialgdaptARSNLKalqeldpdnpaiAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILatdkqnpdaVFVRGLClyyddkmdLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYkmdnsrenHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRAlvhhpdrhtnatQAQKLEQEKLFKEVGEaygilsdptkrsrydrgedimedsgmgghagANLFEQHMFqtyfdpgcrargsnvrfqyyq
Flexible Loop (DISEMBL)
elsaekhkedgntqyKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSilatdkqnpdAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLlkakkeegnekfvagknqeaFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIlgvtknassddiKKAYRKRalvhhpdrhtnatqaQKLEQEKLFKEVGeaygilsdptkrsrydrGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYYQ
Low Complexity Region (SEG)
ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRakllkakkeeGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYYQ
Disordered region (IsUnstruct)
***************KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD****************************************AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA**********************FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS**NHNFLEEAKRLLKRSEVKDYYKILGVTKN******************************************AYGI**************************GANLFEQHMFQTYFDPGCRARGSNVRF****
Disordered Region (DISOPRED)
ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD**********************************************
Disordered Region (DISEMBL)
***********NTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYYQ
Disordered Region (DISPRO)
*LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG*G***GANLFEQHMFQTYFDPGCRARGSNVRF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKxxxxxxxxxxxxxxxxxxxxxEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	470	2.2.26 [Sep-21-2011]
Q5R8D8	494	DnaJ homolog subfamily C	yes	N/A	0.938	0.892	0.479	1e-104
Q99615	494	DnaJ homolog subfamily C	yes	N/A	0.938	0.892	0.481	1e-104
Q9QYI3	494	DnaJ homolog subfamily C	yes	N/A	0.938	0.892	0.479	1e-103
Q54IP0	539	DnaJ homolog subfamily C	yes	N/A	0.948	0.827	0.363	7e-74
Q9HGM9	476	DnaJ homolog subfamily C	yes	N/A	0.855	0.844	0.388	2e-66
Q27968	504	DnaJ homolog subfamily C	no	N/A	0.959	0.894	0.293	4e-33
Q91YW3	504	DnaJ homolog subfamily C	no	N/A	0.968	0.902	0.280	3e-32
Q13217	504	DnaJ homolog subfamily C	no	N/A	0.970	0.904	0.281	3e-32
Q9R0T3	504	DnaJ homolog subfamily C	no	N/A	0.968	0.902	0.274	2e-30
Q84JR9	682	TPR repeat-containing thi	no	N/A	0.680	0.469	0.293	2e-28

>sp|Q5R8D8|DNJC7_PONAB DnaJ homolog subfamily C member 7 OS=Pongo abelii GN=DNAJC7 PE=2 SV=1

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/442 (47%), Positives = 292/442 (66%), Gaps = 1/442 (0%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE  KE GN  Y  K Y++A   Y++AI +CP  A+YYGNRAA  MMLG +  AL DA+ 
Sbjct: 28  AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQ 87

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           +V LD  F +G +R+ KC+++LG+A  A  + +   ELD  N    QE K    + +  +
Sbjct: 88  SVRLDDSFVRGRLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEK 147

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D 
Sbjct: 148 IAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDS 207

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
            N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    + AK LKAKKE+GN+ F
Sbjct: 208 TNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAF 267

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
             G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K ++AI DCT A++ D  Y
Sbjct: 268 KEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 327

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           +KA  RR +C+    QY+E V D EK+Y+ + ++E+   L+ A+  LK+S+ +DYYKILG
Sbjct: 328 IKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKSAQLELKKSKRRDYYKILG 387

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           V KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++RY
Sbjct: 388 VDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRY 447

Query: 424 DRGEDIMED-SGMGGHAGANLF 444
           D G+D+ E+ + MG     N+F
Sbjct: 448 DSGQDLDEEGTNMGDFDPNNIF 469

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm.
Pongo abelii (taxid: 9601)

>sp|Q99615|DNJC7_HUMAN DnaJ homolog subfamily C member 7 OS=Homo sapiens GN=DNAJC7 PE=1 SV=2

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/442 (48%), Positives = 291/442 (65%), Gaps = 1/442 (0%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE  KE GN  Y  K Y++A   Y++AI +CP  A+YYGNRAA  MMLG +  AL DA+ 
Sbjct: 28  AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQ 87

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           +V LD  F +G +R+ KC+++LG+A  A  + +   ELD  N    QE K    + +  +
Sbjct: 88  SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEK 147

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D 
Sbjct: 148 IAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMDS 207

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
            N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    + AK LKAKKE+GN+ F
Sbjct: 208 TNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKAF 267

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
             G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K ++AI DCT A++ D  Y
Sbjct: 268 KEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 327

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           +KA  RR +C+    QY+E V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKILG
Sbjct: 328 IKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILG 387

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           V KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++RY
Sbjct: 388 VDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRY 447

Query: 424 DRGEDIMEDS-GMGGHAGANLF 444
           D G+D+ E+   MG     N+F
Sbjct: 448 DSGQDLDEEGMNMGDFDPNNIF 469

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes. Recruits NR1I3 to the cytoplasm.

Homo sapiens (taxid: 9606)

>sp|Q9QYI3|DNJC7_MOUSE DnaJ homolog subfamily C member 7 OS=Mus musculus GN=Dnajc7 PE=1 SV=2

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/442 (47%), Positives = 291/442 (65%), Gaps = 1/442 (0%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE  KE GN  Y  K Y++A   Y++AI +CPN A+YYGNRAA  MMLG +  AL DA+ 
Sbjct: 28  AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQQ 87

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           +V LD  F +G +R+ KC+++LG+A  A  + +   ELD  N    QE K    + +  +
Sbjct: 88  SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALELDHKNAQAQQEFKNANAVMEYEK 147

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D 
Sbjct: 148 IAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMDS 207

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
            N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    + AK LKAKKE+GN+ F
Sbjct: 208 TNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVACRNAKALKAKKEDGNKAF 267

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
             G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ +  +AI DCT A++ D  Y
Sbjct: 268 KEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDAIEDCTNAVKLDDTY 327

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           +KA  RR +C+    Q++E V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKILG
Sbjct: 328 IKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKILG 387

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           V KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++RY
Sbjct: 388 VDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRY 447

Query: 424 DRGEDIMEDS-GMGGHAGANLF 444
           D G+D+ E+   MG     N+F
Sbjct: 448 DSGQDLDEEGMNMGDFDANNIF 469

Acts as co-chaperone regulating the molecular chaperones HSP70 and HSP90 in folding of steroid receptors, such as the glucocorticoid receptor and the progesterone receptor. Proposed to act as a recycling chaperone by facilitating the return of chaperone substrates to early stages of chaperoning if further folding is required. In vitro, induces ATP-independent dissociation of HSP90 but not of HSP70 from the chaperone-substrate complexes (By similarity). Recruits NR1I3 to the cytoplasm.

Mus musculus (taxid: 10090)

>sp|Q54IP0|DNJC7_DICDI DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1

 Score =  278 bits (711), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 165/454 (36%), Positives = 259/454 (57%), Gaps = 8/454 (1%)

Query: 5   EKHKEDGNTQYKLKQYSKALKCYSEAISVC-PNVAAYYGNRAACYMMLGMYTY---ALDD 60
           E+ K  GN  +K  QY  A++CY++AI +    +AAYYGNRAA Y+ +   +    ++ D
Sbjct: 4   EECKTQGNNYFKQSQYMDAIRCYTQAIELSNGTIAAYYGNRAAAYLAICTKSSLQDSIKD 63

Query: 61  AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
           +  A+ L+  F KG  R  K  I L     A S +      DP N  + QE   ++++ +
Sbjct: 64  SLKAIELERSFIKGYTRASKAYIHLAQYDQAASIIVRGLVFDPRNNELLQEKNQIDSIQR 123

Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA 180
                +K    ++  +++  ++  + Q   +   +++KA  L  L +  +A  +  ++L 
Sbjct: 124 TISSLTKEKALSNPSSSLNQIENVLSQSKYNTQLQVLKARVLIELKQYPQASNLMTTLLQ 183

Query: 181 TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
            D +NP+ ++VRGL LYY +   LA+ HFQ  L   PD+++++   KR + +++KK+EGN
Sbjct: 184 EDSRNPEYLYVRGLSLYYQNNFPLALQHFQNSLTYDPDYSESRVALKRLRSIESKKKEGN 243

Query: 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300
           E F +   Q A+D +TEAL ID +   +NS+L  NRA  L  + + +EAI DCT A+  D
Sbjct: 244 EYFQSKNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTID 303

Query: 301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDYY 359
           PNY KA  RR +C      Y++ V D EK   +D  + E    ++EAK   K+S  KDYY
Sbjct: 304 PNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIKEAKIAHKKSLRKDYY 363

Query: 360 KILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTK 419
           KILGV+K A   +IKKAYRK AL +HPD++    + +K + EK+FK++GEAY +LSD  K
Sbjct: 364 KILGVSKEAGETEIKKAYRKLALQYHPDKNNQLPEEEKAQAEKMFKDIGEAYSVLSDEKK 423

Query: 420 RSRYDRGED---IMEDSGMGGHAGANLFEQHMFQ 450
           + +YD G+D   +  D+ MGG    ++F Q   Q
Sbjct: 424 KRQYDMGQDENGMPFDADMGGVDINSVFSQFFNQ 457

Dictyostelium discoideum (taxid: 44689)

>sp|Q9HGM9|DNJC7_SCHPO DnaJ homolog subfamily C member 7 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC543.02c PE=4 SV=1

 Score =  253 bits (646), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 174/448 (38%), Positives = 250/448 (55%), Gaps = 46/448 (10%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDA 61
           AEK K  GN  YK K+Y++A+K Y+EAI +  +  +A YY NRAA YM +G +  AL DA
Sbjct: 23  AEKQKAIGNAFYKEKKYAEAIKAYTEAIDLGSDSALAIYYSNRAATYMQIGEFELALCDA 82

Query: 62  KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121
           K +  + P                 D P  +S ++   E      +I  E+   E   KN
Sbjct: 83  KQSDRIKP-----------------DVPKTQSRIRQAYE----GLSILNEA---EVYLKN 118

Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASK-TYKLMKAECLAHLNRLQEAQEIANSILA 180
            + A  A  A D       L R +D       ++  +KA+     N +  AQ+IA+ +L 
Sbjct: 119 -KQAGLALNALDR------LQRRIDSTTQPPMSWMYLKAQVYIFQNDMDRAQKIAHDVLR 171

Query: 181 TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
            + +N +A+ +RG  +YY  +   A+ HFQ  LKL PD   AK  +K+ + L+  K +GN
Sbjct: 172 LNPKNVEALVLRGKVMYYSGENAKAITHFQEALKLDPDCTTAKTLFKQVRKLENTKNQGN 231

Query: 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300
           + F  G  Q+A++ Y+EAL+ID  N    +KL  NRATVL ++ +  EA++D   AL  D
Sbjct: 232 DLFRQGNYQDAYEKYSEALQIDPDNKETVAKLYMNRATVLLRLKRPEEALSDSDNALAID 291

Query: 301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRL---LKRSEVKD 357
            +YLK L  R K   AL +++E V D +   ++D S  + N  +E +RL   LK+S+ KD
Sbjct: 292 SSYLKGLKVRAKAHEALEKWEEAVRDVQSAIELDAS--DANLRQELRRLQLELKKSKRKD 349

Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
           +YKILGV+K A+  +IKKAYRK ALV+HPD++     A  LE E  FKEVGEAY ILSDP
Sbjct: 350 HYKILGVSKEATDIEIKKAYRKLALVYHPDKN-----AGNLEAEARFKEVGEAYTILSDP 404

Query: 418 TKRSRYDRGEDIMEDSGMGGHAGANLFE 445
             R R+D G D+  + GM G AG + F+
Sbjct: 405 ESRRRFDSGVDL--EPGMEGGAGMDPFD 430

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q27968|DNJC3_BOVIN DnaJ homolog subfamily C member 3 OS=Bos taurus GN=DNAJC3 PE=1 SV=1

 Score =  142 bits (359), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 141/481 (29%), Positives = 228/481 (47%), Gaps = 30/481 (6%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
            EKH E G       Q + AL  +  A+   P N  AYY  RA  ++ +G    AL D  
Sbjct: 37  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAMGKSKAALPDLT 95

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
             + L   F+   +++    +  G    A  + K + +    NP+  +E +A   + K+ 
Sbjct: 96  KVIELKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLVKSD 152

Query: 123 E------GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
           E       A  AFE++D+  A+ +LD+ ++  V     + ++AEC     +  E ++  +
Sbjct: 153 EMQRLRSQALDAFESSDFTAAITFLDKILEVCVWDAELRELRAECFI---KEGEPRKAIS 209

Query: 177 SILATDKQNPD--AVFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233
            + A+ K   D    F +   LYY+    +L+++  +  LKL  DH +    YK+ K L 
Sbjct: 210 DLKASSKLKNDNTEAFYKISTLYYELGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 269

Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKID--ARNININSKLLHNRATVLF-KMGKYNEAI 290
              E   E    G+  +A   Y   +K +       I SK    R    F K  K  EAI
Sbjct: 270 KLIESAEELIKEGRYTDAISKYESVMKTEPGVHEYTIRSK---ERICHCFSKDEKPVEAI 326

Query: 291 ADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRL 349
             C+  L+ +P+ + AL  R + +     Y E + D E   +  +N ++    LE+A+RL
Sbjct: 327 RVCSEVLQVEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 386

Query: 350 LKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGE 409
           LK+S+ +DYYKILGV +NA   +I KAYRK AL  HPD   N  + +K   EK F ++  
Sbjct: 387 LKQSQRRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--AEKKFIDIAA 444

Query: 410 AYGILSDPTKRSRYDRGEDIME-DSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQY 468
           A  +LSDP  R ++D GED ++ +S  GG  G N F +  + ++      + G   RF++
Sbjct: 445 AKEVLSDPEMRKKFDDGEDPLDAESQQGG--GGNPFHRS-WNSWQGFSPFSSGGPFRFKF 501

Query: 469 Y 469
           +
Sbjct: 502 H 502

Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.

Bos taurus (taxid: 9913)

>sp|Q91YW3|DNJC3_MOUSE DnaJ homolog subfamily C member 3 OS=Mus musculus GN=Dnajc3 PE=1 SV=1

 Score =  140 bits (352), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 214/477 (44%), Gaps = 22/477 (4%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
            EKH E G       Q + AL  +  A+   P N  AYY  RA  ++ +G    AL D  
Sbjct: 37  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAMGKSKAALPDLT 95

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
             ++L   F+   +++    +  G    A  + K + +    NP+  +E +A   + K  
Sbjct: 96  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKAD 152

Query: 123 E------GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
           E       A  AF+  DY  A+ +LD+ ++  V     + ++AEC     +  E ++  +
Sbjct: 153 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI---KEGEPRKAIS 209

Query: 177 SILATDKQNPD--AVFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233
            + A  K   D    F +   LYY     +L+++  +  LKL  DH +    YK+ K L 
Sbjct: 210 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 269

Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
              E   E    G+  +A   Y   +K +        +          K  K  EAI  C
Sbjct: 270 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 329

Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKR 352
           +  L+ +P+ + AL  R + +     Y E + D E   +  +N ++    LE+A+RLLK+
Sbjct: 330 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 389

Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
           S+ +DYYKILGV +NA   +I KAYRK AL  HPD   N  + +K   EK F ++  A  
Sbjct: 390 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--AEKKFIDIAAAKE 447

Query: 413 ILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYY 469
           +LSDP  R ++D GED ++     G  G            F+P   + G   RF+++
Sbjct: 448 VLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPF--SSGGPFRFKFH 502

Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.

Mus musculus (taxid: 10090)

>sp|Q13217|DNJC3_HUMAN DnaJ homolog subfamily C member 3 OS=Homo sapiens GN=DNAJC3 PE=1 SV=1

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 134/476 (28%), Positives = 216/476 (45%), Gaps = 20/476 (4%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
            EKH E G       Q + AL  +  A+   P N  AYY  RA  ++ +G    AL D  
Sbjct: 37  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAMGKSKAALPDLT 95

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
             + L   F+   +++    +  G    A  + K + +    NP+  +E +A   + K+ 
Sbjct: 96  KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSD 152

Query: 123 E------GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
           E       A  AF + DY  A+ +LD+ ++  V     + ++AEC       ++A  I++
Sbjct: 153 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA--ISD 210

Query: 177 SILATDKQNPDA-VFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234
              A+  +N +   F +   LYY     +L+++  +  LKL  DH +    YK+ K L  
Sbjct: 211 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 270

Query: 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
             E   E    G+  +A   Y   +K +        +          K  K  EAI  C+
Sbjct: 271 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 330

Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKRS 353
             L+ +P+ + AL  R + +     Y E + D E   +  +N ++    LE+A+RLLK+S
Sbjct: 331 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 390

Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
           + +DYYKILGV +NA   +I KAYRK AL  HPD   N  + +K   EK F ++  A  +
Sbjct: 391 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--AEKKFIDIAAAKEV 448

Query: 414 LSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYY 469
           LSDP  R ++D GED ++     G  G            F+P   + G   RF+++
Sbjct: 449 LSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPF--SSGGPFRFKFH 502

Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.

Homo sapiens (taxid: 9606)

>sp|Q9R0T3|DNJC3_RAT DnaJ homolog subfamily C member 3 OS=Rattus norvegicus GN=Dnajc3 PE=2 SV=3

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 218/477 (45%), Gaps = 22/477 (4%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
            EKH E G       Q + AL  +  A+   P N  AYY  RA  ++ +G    AL D  
Sbjct: 37  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAMGKSKAALPDLT 95

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
             + L   F+   +++    +  G    A  + K + +    NP+  +E +A   + K  
Sbjct: 96  RVIELKMDFTAARLQRGHLLLKQGRLAEAEDDFKKVLK---SNPSENEEKEAQSQLVKAD 152

Query: 123 E------GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
           E       A  AF++ DY  A+ +LD  ++  V     + ++AEC       ++A     
Sbjct: 153 EMQRLRAQALDAFDSADYTAAITFLDEILEVCVWDAELRELRAECFIKEGEPRKAISDLK 212

Query: 177 SILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKK 236
           +       N +A +   +  Y     +L+++  +  LKL  DH +    YK+ K L    
Sbjct: 213 AASKLKNDNTEAFYKISILYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 272

Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
               E    G+  +A   Y   +K +        +          K  K  EAI  C+  
Sbjct: 273 GSAEELIRDGRYTDATSKYESVMKAEPSVAEYTVRSKERICHCFSKDEKPVEAIKICSEV 332

Query: 297 LEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKRSEV 355
           L+ +P+ + AL  R + +     Y E + D E   +  +N ++    LE+A+RLLK+S+ 
Sbjct: 333 LQLEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEQNENDQQIREGLEKAQRLLKQSQK 392

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYYKILGV +NA   +I KAYRK AL  HPD   +  + +K   EK F ++  A  +LS
Sbjct: 393 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQSEEEKKK--AEKKFIDIAAAKEVLS 450

Query: 416 DPTKRSRYDRGEDIME-DSGMGGHAGANLFEQHMFQTY--FDPGCRARGSNVRFQYY 469
           DP  R ++D GED ++ ++  GG  G+N F +  + ++  F+P   + G   RF+++
Sbjct: 451 DPEMRRKFDDGEDPLDAETQQGG--GSNPFHRS-WDSWQGFNPF--SSGGPFRFKFH 502

Involved in the unfolded protein response (UPR) during ER stress. Co-chaperone of HSPA8/HSC70, it stimulates its ATPase activity. May inhibit both the autophosphorylation of EIF2AK2/PKR and the ability of EIF2AK2 to catalyze phosphorylation of the EIF2A. May inhibit EIF2AK3/PERK activity.

Rattus norvegicus (taxid: 10116)

>sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 166/344 (48%), Gaps = 24/344 (6%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           +E+ K+ GN  Y+   Y++AL  Y  AIS+ P   AY  NRAA     G    A+ +   
Sbjct: 211 SEEVKKAGNVMYRKGNYAEALALYDRAISLSPENPAYRSNRAAALAASGRLEEAVKECLE 270

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           AV  DP +++   R     + LG+A  AR +L    +  PD   + +    L+T+ K+  
Sbjct: 271 AVRCDPSYARAHQRLASLYLRLGEAENARRHLCVSGQC-PDQADLQR----LQTLEKHLR 325

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGV-ASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
             ++A +  D+RT +  +D A+  G  +S      KAE    L++++++    +SI   D
Sbjct: 326 LCTEARKIGDWRTVISEIDAAIANGADSSPQLVACKAEAFLRLHQIKDSDLCISSIPRLD 385

Query: 183 ---KQNPDAVF---VRGLCLYYDDKMDLAVNHFQLLL-----KLAPDHAKAKETYK---R 228
               Q P+ +F        L    ++D+A+  F+  +      +  DH+ + E       
Sbjct: 386 HHHTQPPEKLFGIVCDAYVLCVQAQVDMALGRFENAIVKVERAMTIDHSNSPEVVSVLNN 445

Query: 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE 288
            K +   +  GNE F +G+  EA   Y + LK+DA     NS L  NRA   FK+G + +
Sbjct: 446 VKNVAKARTRGNELFSSGRYSEASVAYGDGLKLDA----FNSVLYCNRAACWFKLGMWEK 501

Query: 289 AIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
           ++ DC  AL   P+Y KAL RR   +  LG++++ V D E + K
Sbjct: 502 SVDDCNQALRIQPSYTKALLRRAASYGKLGRWEDAVRDYEVLRK 545

Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
307198208	499	DnaJ-like protein subfamily C member 7 [	0.919	0.865	0.574	1e-128
91082841	490	PREDICTED: similar to DnaJ-like protein	0.987	0.946	0.519	1e-128
378465918	494	DnaJ-9 [Bombyx mori]	0.987	0.939	0.538	1e-125
114051830	515	DnaJ (Hsp40) homolog 9 [Bombyx mori] gi|	0.987	0.900	0.538	1e-125
427783019	497	Putative dnaj log subfamily protein c me	0.976	0.923	0.493	1e-121
357617269	493	DnaJ-like protein 9 [Danaus plexippus]	0.948	0.904	0.544	1e-121
332021118	501	DnaJ-like protein subfamily C member 7 [	0.917	0.860	0.546	1e-120
332374038	496	unknown [Dendroctonus ponderosae]	0.946	0.897	0.547	1e-119
156551964	490	PREDICTED: dnaJ homolog subfamily C memb	0.980	0.940	0.508	1e-117
345490216	478	PREDICTED: dnaJ homolog subfamily C memb	0.974	0.958	0.509	1e-117

>gi|307198208|gb|EFN79223.1| DnaJ-like protein subfamily C member 7 [Harpegnathos saltator]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 248/432 (57%), Positives = 304/432 (70%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A+  KE  N  Y LKQY KAL  Y+EA+S+CP+V  YYGNRAACYMML  Y  AL DAK 
Sbjct: 34  ADSKKEIANQYYSLKQYKKALVMYNEALSLCPDVPRYYGNRAACYMMLKQYRDALADAKK 93

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
            + L+P+F+KG IR IKC + LGD   A + L+ L E DPDN AI  E K L  + K FE
Sbjct: 94  CIQLEPKFTKGYIRVIKCCLVLGDIVEAETMLQKLLEFDPDNKAITGEQKDLAYVKKYFE 153

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A+ A+ A DYR  ++ +DR  D   +   +KL KAECLA L R QEAQEIAN  L  DK
Sbjct: 154 DANTAYNAKDYRKVIYCMDRCCDVSTSCTHFKLTKAECLAFLGRYQEAQEIANDTLHIDK 213

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
            N DA+++RG+CLY+ D +D A  HFQ +L+LAPDH KA E YKRA+ L+ KKEEGN  F
Sbjct: 214 NNADAIYIRGMCLYFQDDVDKAFVHFQQVLRLAPDHDKALEIYKRARCLRKKKEEGNAAF 273

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
              + QEA++IY EAL ID +NI  N+KL  N+ATV  K+G+  E++ +CT AL+ D NY
Sbjct: 274 KMRQYQEAYNIYNEALSIDPQNIMTNAKLHFNKATVAAKLGRLKESVTECTEALKLDENY 333

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           LKAL RR   +  L +Y+E V D E+  KMD +REN   L EAK  LK+S+ KDYYKILG
Sbjct: 334 LKALLRRAASYMELKEYEEAVRDLEQACKMDKTRENKRLLAEAKLALKKSKRKDYYKILG 393

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           + KNAS+DDIKKAYRKRA+VHHPDRH NAT+ +K EQEK FKEVGEAYGILSDP KRSRY
Sbjct: 394 IDKNASTDDIKKAYRKRAMVHHPDRHANATEGEKKEQEKKFKEVGEAYGILSDPKKRSRY 453

Query: 424 DRGEDIMEDSGM 435
           DRG DI ++ G 
Sbjct: 454 DRGHDIDDNEGF 465

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082841|ref|XP_969908.1| PREDICTED: similar to DnaJ-like protein [Tribolium castaneum] gi|270007594|gb|EFA04042.1| hypothetical protein TcasGA2_TC014273 [Tribolium castaneum]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/466 (51%), Positives = 317/466 (68%), Gaps = 2/466 (0%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE  KE+GN  YK+KQY  AL  Y+EAI +CP  AAYY NR+ACYMML  +  AL+DA+ 
Sbjct: 25  AELKKENGNQLYKVKQYRSALNLYTEAIELCPETAAYYSNRSACYMMLNNFQEALEDARK 84

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           ++++DP FSKG IR +KC IALGD  TA + +K +  LD  N  I  E+++ E + +   
Sbjct: 85  SITIDPAFSKGYIRILKCAIALGDLTTAENAIKQINLLDK-NANINNETRSFEKLRQFET 143

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A+KA E  D+R  ++ +DR +D+      YK+MKAECLA L R QE+QEIAN+ L  DK
Sbjct: 144 EAAKAMEKKDFRKVVYCMDRCLDEAPTCTRYKIMKAECLAFLGRYQESQEIANTALHLDK 203

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
            N DA++VRG+CLYY+D +D A NHFQ +L+LAPDH KA + YKRAK LK  KE GNE +
Sbjct: 204 TNADAIYVRGMCLYYEDNLDSAFNHFQQVLRLAPDHKKAMDIYKRAKELKKTKESGNEAY 263

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
              + QEAF +YTEAL ID  N   N+KL  NRATV  ++ K  EA+ DCT ALE D  Y
Sbjct: 264 KNCRFQEAFTLYTEALAIDPLNKKANAKLYFNRATVQHRLTKTREAVDDCTSALELDDTY 323

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           LKAL RR  C+  LG+Y++ V D EK+ K++ SRE+   L++AK  LK+S+ KDYYKILG
Sbjct: 324 LKALLRRASCYMDLGEYEDAVRDYEKVCKLNKSREHRKLLQDAKFALKKSKRKDYYKILG 383

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           V +NA+  +IKKAYRK+AL+ HPDRH NAT A K +QEK FKE+GEAYGILSDP K++RY
Sbjct: 384 VERNANDSEIKKAYRKKALMLHPDRHANATDAVKKDQEKKFKELGEAYGILSDPKKKARY 443

Query: 424 DRGEDIME-DSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQY 468
           D G+D+ E D GM       +F+    Q +  P   +  +   FQ+
Sbjct: 444 DSGQDMDEFDGGMSDIDPTQVFQSFFGQAHSCPNDFSFNTGFPFQF 489

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|378465918|gb|AFC01223.1| DnaJ-9 [Bombyx mori]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/470 (53%), Positives = 313/470 (66%), Gaps = 6/470 (1%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K+ GN  YK K Y  AL  Y EAI +CP  AAYYGNR+ACYMML MY  AL+DA+ 
Sbjct: 25  AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQK 84

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           AVSLDP F+KG IR  KC IALGD       ++   EL      ++ E +ALET+ +  E
Sbjct: 85  AVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELG-GVECVSGELRALETLKRLHE 143

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A +A +ANDYR  +F +DR +D   +    KL KAECLA L R QEAQEIAN +L  D 
Sbjct: 144 DAQRALDANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDS 203

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           Q+ +A++VRGLCLY++D+ + A  HFQ +L+L PDH KA ETYKRAKLLK KKEEGNE F
Sbjct: 204 QDTEAIYVRGLCLYFEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAF 263

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
             G+ Q+A  +Y EAL ID  N  +N+KL  N+ATV  K+   NE    CT ALE D NY
Sbjct: 264 KMGRWQQALALYNEALTIDKNNRTVNAKLHFNKATVCAKLNMLNETAEACTAALELDENY 323

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           +KAL RR KC+  LG+Y+E V D E++YK+D S++    L EAK  LKRS+ KDYYKILG
Sbjct: 324 VKALLRRAKCYTELGEYEEAVKDYERLYKIDKSKQTKQLLHEAKMALKRSKRKDYYKILG 383

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           V K+AS+DDIKKAYRKRALVHHPDRH +AT+ ++ EQE+ FKE+GEAYGILSDP KR RY
Sbjct: 384 VDKSASTDDIKKAYRKRALVHHPDRHASATEVERREQERRFKEIGEAYGILSDPKKRKRY 443

Query: 424 DRGEDIMEDSGMGGHAGANLFEQHMF-----QTYFDPGCRARGSNVRFQY 468
           D G D+ +D         N+  Q  F     Q  F  G    GS   FQ+
Sbjct: 444 DDGHDLHDDGAGMSDIDPNVVFQSFFGGNRPQFDFHSGSSFPGSAFSFQF 493

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051830|ref|NP_001040185.1| DnaJ (Hsp40) homolog 9 [Bombyx mori] gi|87248313|gb|ABD36209.1| DnaJ-like protein isoform A [Bombyx mori] gi|253721959|gb|ACT34043.1| DnaJ-9 [Bombyx mori] gi|257122608|gb|ACV41273.1| DNAJ9 [Bombyx mori]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 253/470 (53%), Positives = 313/470 (66%), Gaps = 6/470 (1%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K+ GN  YK K Y  AL  Y EAI +CP  AAYYGNR+ACYMML MY  AL+DA+ 
Sbjct: 46  AEEKKDSGNYLYKFKNYKGALAMYDEAIKLCPENAAYYGNRSACYMMLCMYKKALEDAQK 105

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           AVSLDP F+KG IR  KC IALGD       ++   EL      ++ E +ALET+ +  E
Sbjct: 106 AVSLDPTFTKGYIRAAKCCIALGDLLNGEQAVRRATELG-GVECVSGELRALETLKRLHE 164

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A +A +ANDYR  +F +DR +D   +    KL KAECLA L R QEAQEIAN +L  D 
Sbjct: 165 DAQRALDANDYRRVVFCMDRCLDYSPSCTKCKLTKAECLALLGRCQEAQEIANDLLRLDS 224

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           Q+ +A++VRGLCLY++D+ + A  HFQ +L+L PDH KA ETYKRAKLLK KKEEGNE F
Sbjct: 225 QDTEAIYVRGLCLYFEDRDEQAFKHFQQVLRLNPDHKKAVETYKRAKLLKQKKEEGNEAF 284

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
             G+ Q+A  +Y EAL ID  N  +N+KL  N+ATV  K+   NE    CT ALE D NY
Sbjct: 285 KMGRWQQALALYNEALTIDKNNRTVNAKLHFNKATVCAKLNMLNETAEACTAALELDENY 344

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           +KAL RR KC+  LG+Y+E V D E++YK+D S++    L EAK  LKRS+ KDYYKILG
Sbjct: 345 VKALLRRAKCYTELGEYEEAVKDYERLYKIDKSKQTKQLLHEAKMALKRSKRKDYYKILG 404

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           V K+AS+DDIKKAYRKRALVHHPDRH +AT+ ++ EQE+ FKE+GEAYGILSDP KR RY
Sbjct: 405 VDKSASTDDIKKAYRKRALVHHPDRHASATEVERREQERRFKEIGEAYGILSDPKKRKRY 464

Query: 424 DRGEDIMEDSGMGGHAGANLFEQHMF-----QTYFDPGCRARGSNVRFQY 468
           D G D+ +D         N+  Q  F     Q  F  G    GS   FQ+
Sbjct: 465 DDGHDLHDDGAGMSDIDPNVVFQSFFGGNRPQFDFHSGSSFPGSAFSFQF 514

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427783019|gb|JAA56961.1| Putative dnaj log subfamily protein c member 7 [Rhipicephalus pulchellus]

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/466 (49%), Positives = 317/466 (68%), Gaps = 7/466 (1%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE  KE+GN  Y L++Y +A+K Y+EAI +  +  AYY NRAACYMMLG +  ALDD   
Sbjct: 23  AEVKKEEGNELYGLQKYDEAVKRYTEAIELDGSNVAYYSNRAACYMMLGNHRAALDDCHQ 82

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A+  DP  +K L+R+ KC +ALGD   A  +L  L++LDP NPA+ +E K+ E +    +
Sbjct: 83  ALQRDPHNAKSLLREAKCYVALGDPAAALRSLHLLRDLDPQNPALPRELKSAEILQHFLD 142

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
              KA+EA +Y   ++ +DRA+ Q V+    +++KAE LA L RL +A++IAN+I+  + 
Sbjct: 143 EGDKAYEAQNYEKVIYCMDRALQQAVSCSKIEVLKAESLALLKRLTDARQIANNIMRAEP 202

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
            N DA++VRGLC YY+D ++ A+ HFQ +L+LAPDH KA   YK+A+LLK+KK+EGNE F
Sbjct: 203 TNADAMYVRGLCFYYEDNIEKALQHFQQVLRLAPDHPKASAAYKKARLLKSKKDEGNEAF 262

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
             G  QEAF+IYT AL++D  N   NSKL  NRATV  K+ K N+ + DCT A+  + +Y
Sbjct: 263 NKGNFQEAFNIYTSALEVDPSNKLANSKLYFNRATVCSKINKLNQTVEDCTTAISLNEDY 322

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           LKA  RR K +  L  Y+E V D E+I + D++REN   L++AK  LK+S+ KDYYK+LG
Sbjct: 323 LKAYMRRAKTYMDLEMYEEAVRDYERILRKDHTRENKRLLDQAKLELKKSKRKDYYKVLG 382

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           + K+A+ DDIKKAYRKRAL+HHPDRH+NA++  K EQEK FKE+GEAY ILSDP KR RY
Sbjct: 383 IPKDATVDDIKKAYRKRALLHHPDRHSNASEDMKREQEKKFKELGEAYNILSDPKKRMRY 442

Query: 424 DRGEDIMEDSGMGGHAGANLFEQHMFQTYFD-PGCRARGSNVRFQY 468
           D G D+ +       A       H+F+T+F+ PG  + G +  FQ+
Sbjct: 443 DEGRDLEDMDSFSSDASP-----HVFRTFFETPGFFSTGGS-SFQH 482

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617269|gb|EHJ70687.1| DnaJ-like protein 9 [Danaus plexippus]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 247/454 (54%), Positives = 316/454 (69%), Gaps = 8/454 (1%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ KE GN  YK K Y  AL  Y +AI +CP  AAYYGNR+ACYMMLGMY  AL+DA+ 
Sbjct: 25  AEEKKESGNHLYKFKNYKGALAMYEDAIKLCPENAAYYGNRSACYMMLGMYKKALEDAQK 84

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELD-PDNPAIAQESKALETMAKNF 122
           AV+LDP F+KG IR  KC+IA+GD   A   +++  EL  PD    + E +ALE++ +  
Sbjct: 85  AVALDPTFTKGYIRMAKCHIAVGDISGAEQAVRSASELGGPD--CASNERRALESLRRLH 142

Query: 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
           E A +A EA DYR  +F +DR ++   +S   KL+KAECLA + R QEAQEIAN  L  D
Sbjct: 143 EDAQRAMEAGDYRRVVFCMDRCLEYSPSSIKAKLIKAECLAMIGRCQEAQEIANDSLRFD 202

Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
             + +A++VRGLCLY++DK + A  HFQ +L+LAPDH K+ ETYK+AKLLK KKEEGNE 
Sbjct: 203 SLDTEAIYVRGLCLYFEDKDEQAFKHFQQVLRLAPDHKKSLETYKKAKLLKQKKEEGNEA 262

Query: 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
           F  G+ Q+A ++Y EAL ID  N  +N+KL  N+ATV  K+ +  EA   CT ALE D N
Sbjct: 263 FKMGRWQQALNLYNEALTIDKNNRKVNAKLYFNKATVCSKLNQIEEAAEACTAALELDEN 322

Query: 303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIL 362
           Y+KAL RR KC+  LG +++ V D EK+YK+D ++E+   L EAK  LK+S+ KDYYKIL
Sbjct: 323 YVKALLRRAKCYAELGNHEDAVKDYEKLYKIDKNKEHKQLLHEAKLALKKSKRKDYYKIL 382

Query: 363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
           G+ K AS DDIKKAYRKRALVHHPDRH  A   ++ EQE+ FKEVGEAY +LSDP KR+R
Sbjct: 383 GIEKTASEDDIKKAYRKRALVHHPDRHAGAPDNERREQERRFKEVGEAYEVLSDPKKRAR 442

Query: 423 YDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPG 456
           YD G+D+ + SG     G N+    MFQTYF+ G
Sbjct: 443 YDHGQDLDDGSG-----GINIDPNMMFQTYFNGG 471

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021118|gb|EGI61505.1| DnaJ-like protein subfamily C member 7 [Acromyrmex echinatior]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/432 (54%), Positives = 301/432 (69%), Gaps = 1/432 (0%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE  K+  N  Y  KQY KAL  Y+E I++CP+++ YY NRAACYMMLG Y  AL DAK 
Sbjct: 29  AESKKKVANQHYSQKQYKKALVGYNEVIALCPDISHYYSNRAACYMMLGQYRDALADAKK 88

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
            + L+P FSK  IR IKC + LGD   A ++LK L + D +N +IA E K +  + K  +
Sbjct: 89  CIELEPTFSKAYIRMIKCCLILGDILEAETSLKKLMDFDSNNESIAAEQKDIAYVKKFLK 148

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A  A+ A DYR  ++ +DR  D   +   +KL+KAECLA L R QEAQ+IAN+ L  DK
Sbjct: 149 DADAAYNAKDYRMVVYCMDRCCDISTSGTRFKLIKAECLALLGRYQEAQDIANNALHIDK 208

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           QN +A+++RG+CLY+ D +D A  HFQ +L+LAPDH KA E YKRAK LK KKEEGN  F
Sbjct: 209 QNAEALYIRGMCLYFQDDVDRAFTHFQQVLRLAPDHDKALEIYKRAKCLKKKKEEGNAAF 268

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
              + QEA+++Y EAL ID  NI  N+KL  N+AT   K+GK NE++A+ T AL  + NY
Sbjct: 269 KREQYQEAYNLYNEALTIDPHNIMTNAKLHFNKATAAAKLGKLNESVAEYTKALNLNENY 328

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSEVKDYYKIL 362
           LKALS+R   +  L +Y+E V D EK  KMD + RE    L +AK LL++S+ KDYYKIL
Sbjct: 329 LKALSKRANIYMELEEYEEAVYDLEKACKMDKTNRETKRLLGKAKLLLRKSKRKDYYKIL 388

Query: 363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
           G+ KNAS++DIKKAYRKRAL HHPDRH NA++ +K EQEK FKEVGEAYGILSDP KRSR
Sbjct: 389 GIDKNASTEDIKKAYRKRALDHHPDRHVNASEGEKREQEKKFKEVGEAYGILSDPKKRSR 448

Query: 423 YDRGEDIMEDSG 434
           YDRG D+ ++ G
Sbjct: 449 YDRGHDLDDNEG 460

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374038|gb|AEE62160.1| unknown [Dendroctonus ponderosae]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 249/455 (54%), Positives = 320/455 (70%), Gaps = 10/455 (2%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
           E  AE  KE+GN  +K+KQY  AL+ YSEAI++CP  AAYYGNRAACYMML  +  AL+D
Sbjct: 24  EECAELKKENGNQLFKIKQYQSALQLYSEAINLCPETAAYYGNRAACYMMLNRHRDALED 83

Query: 61  AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
           A+ +V +DP F KG +R  KC IALGD  TA +  K    L     ++  E K+++ + K
Sbjct: 84  ARRSVQIDPTFVKGYVRIAKCGIALGDLVTAENAAKQADSLQL--GSVTNEMKSIQKI-K 140

Query: 121 NFEG-ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
            FE  A KA +A DYR  +F +DR +D+    + +KL+KAECLA+L R QEAQEIAN IL
Sbjct: 141 QFEADALKAKDAKDYRKMVFCMDRCLDEASTCEKFKLIKAECLAYLGRYQEAQEIANDIL 200

Query: 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239
             +K + DA++VRGLCLYY+D +D A NHFQ +L+LAP H +A E YKRAKLLK KKEEG
Sbjct: 201 HVNKGSADAIYVRGLCLYYEDSIDKAFNHFQQVLRLAPGHTRAMEQYKRAKLLKKKKEEG 260

Query: 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299
           NE F   K  +A  +YT+AL+ID  N   N+KL  NRAT L ++ K  +AI DC+ AL  
Sbjct: 261 NEAFKLCKFHDAVKLYTKALEIDPLNKKTNAKLFFNRATALSRLTKIKDAILDCSSALRL 320

Query: 300 DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYY 359
           D  YLKAL RR KC+  +G++++ V D EK  KMD SREN   L+EAK  LK+S+ KDYY
Sbjct: 321 DDTYLKALLRRAKCYMDIGEFEDAVKDYEKALKMDKSRENKRLLQEAKLALKKSKRKDYY 380

Query: 360 KILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTK 419
           KILGV KNA+ D+IKKAYRKRAL+HHPDRH NAT A+K EQEK FKE+GEAYGILSDP K
Sbjct: 381 KILGVEKNANEDEIKKAYRKRALIHHPDRHANATDAEKKEQEKKFKELGEAYGILSDPKK 440

Query: 420 RSRYDRGEDIME-DSGMGGHAGANLFEQHMFQTYF 453
           ++RYD G+D+ + D GM     +++    +FQ++F
Sbjct: 441 KARYDSGQDMDDFDGGM-----SDIDPTQVFQSFF 470

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551964|ref|XP_001602403.1| PREDICTED: dnaJ homolog subfamily C member 7-like isoform 1 [Nasonia vitripennis]

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/472 (50%), Positives = 306/472 (64%), Gaps = 11/472 (2%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
           E+ AE  KE+ N  Y  KQY +AL  Y+E I +CP+VA YY NR ACYMML  Y  AL D
Sbjct: 25  EILAELKKEEANQLYSAKQYKQALLGYNEVIELCPDVARYYSNRCACYMMLSQYRDALKD 84

Query: 61  AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
           AK  + LDP F K   R IKC++ LGD     + +  L++L+P   +IA E   L  + +
Sbjct: 85  AKKCLELDPGFVKAYTRLIKCSLMLGDIVETETAISKLEQLEPTKQSIAAELNDLAILKR 144

Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA 180
             + A  A+   DYR  ++ +DR  +       +K+ KAECLA+L R  EA+  AN +L 
Sbjct: 145 FIKEAEVAYSIKDYRKVVYCMDRCAEVSPFCARFKITKAECLAYLGRYSEAEMGANDVLH 204

Query: 181 TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
           TDKQN DA++VRG CLYY D +D A  HFQ +L+LAPDH KA + YKRAKLLK KKEEGN
Sbjct: 205 TDKQNADAIYVRGTCLYYQDNIDQAFKHFQQVLRLAPDHTKALDIYKRAKLLKQKKEEGN 264

Query: 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300
             F A + QEA+++YTEAL +D +N   N+KL  N+ATV  K+ K  E++++C  AL+ D
Sbjct: 265 VAFKAERYQEAYNLYTEALLVDPQNTKANAKLHFNKATVAAKLKKLKESVSECNEALKLD 324

Query: 301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYK 360
            NYLKA+ RR  C+  L  Y+E V D E+  KMD SR+N   L EAK  LK+S+ KDYYK
Sbjct: 325 DNYLKAILRRAACYMELQDYEEAVRDYERACKMDKSRDNKRLLLEAKMALKKSKRKDYYK 384

Query: 361 ILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKR 420
           ILG+ KNAS++DIKKAYRKRA+VHHPDRH NAT  +K EQEK FKEVGEAYGILSDP KR
Sbjct: 385 ILGIDKNASTEDIKKAYRKRAMVHHPDRHANATDGEKKEQEKKFKEVGEAYGILSDPKKR 444

Query: 421 SRYDRGEDIMEDSGMGGHAGANLFEQHM---FQTYFD-PGCRARGSNVRFQY 468
           SRYD G D+ E       +  N  +  M   FQ +FD P     G   RF++
Sbjct: 445 SRYDSGHDLEE-------SDYNFNDMDMDSRFQAFFDSPFASDCGRGFRFEF 489

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490216|ref|XP_003426329.1| PREDICTED: dnaJ homolog subfamily C member 7-like isoform 2 [Nasonia vitripennis]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 239/469 (50%), Positives = 304/469 (64%), Gaps = 11/469 (2%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE  KE+ N  Y  KQY +AL  Y+E I +CP+VA YY NR ACYMML  Y  AL DAK 
Sbjct: 16  AELKKEEANQLYSAKQYKQALLGYNEVIELCPDVARYYSNRCACYMMLSQYRDALKDAKK 75

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
            + LDP F K   R IKC++ LGD     + +  L++L+P   +IA E   L  + +  +
Sbjct: 76  CLELDPGFVKAYTRLIKCSLMLGDIVETETAISKLEQLEPTKQSIAAELNDLAILKRFIK 135

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A  A+   DYR  ++ +DR  +       +K+ KAECLA+L R  EA+  AN +L TDK
Sbjct: 136 EAEVAYSIKDYRKVVYCMDRCAEVSPFCARFKITKAECLAYLGRYSEAEMGANDVLHTDK 195

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           QN DA++VRG CLYY D +D A  HFQ +L+LAPDH KA + YKRAKLLK KKEEGN  F
Sbjct: 196 QNADAIYVRGTCLYYQDNIDQAFKHFQQVLRLAPDHTKALDIYKRAKLLKQKKEEGNVAF 255

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
            A + QEA+++YTEAL +D +N   N+KL  N+ATV  K+ K  E++++C  AL+ D NY
Sbjct: 256 KAERYQEAYNLYTEALLVDPQNTKANAKLHFNKATVAAKLKKLKESVSECNEALKLDDNY 315

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
           LKA+ RR  C+  L  Y+E V D E+  KMD SR+N   L EAK  LK+S+ KDYYKILG
Sbjct: 316 LKAILRRAACYMELQDYEEAVRDYERACKMDKSRDNKRLLLEAKMALKKSKRKDYYKILG 375

Query: 364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
           + KNAS++DIKKAYRKRA+VHHPDRH NAT  +K EQEK FKEVGEAYGILSDP KRSRY
Sbjct: 376 IDKNASTEDIKKAYRKRAMVHHPDRHANATDGEKKEQEKKFKEVGEAYGILSDPKKRSRY 435

Query: 424 DRGEDIMEDSGMGGHAGANLFEQHM---FQTYFD-PGCRARGSNVRFQY 468
           D G D+ E       +  N  +  M   FQ +FD P     G   RF++
Sbjct: 436 DSGHDLEE-------SDYNFNDMDMDSRFQAFFDSPFASDCGRGFRFEF 477

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	470
FB|FBgn0032586	508	Tpr2 "Tetratricopeptide repeat	0.974	0.901	0.460	2.5e-104
UNIPROTKB|F1NPY5	469	DNAJC7 "Uncharacterized protei	0.940	0.942	0.469	2.6e-102
UNIPROTKB|F1NPY6	486	DNAJC7 "Uncharacterized protei	0.940	0.909	0.469	2.6e-102
UNIPROTKB|E2QWR5	494	DNAJC7 "Uncharacterized protei	0.976	0.929	0.463	2.3e-101
UNIPROTKB|F1S0P4	494	DNAJC7 "Uncharacterized protei	0.976	0.929	0.463	2.3e-101
UNIPROTKB|Q99615	494	DNAJC7 "DnaJ homolog subfamily	0.938	0.892	0.470	6.2e-101
MGI|MGI:1928373	494	Dnajc7 "DnaJ (Hsp40) homolog,	0.976	0.929	0.461	7.9e-101
UNIPROTKB|G3V8B8	494	Dnajc7 "Protein Dnajc7" [Rattu	0.976	0.929	0.461	2.1e-100
RGD|1303226	494	Dnajc7 "DnaJ (Hsp40) homolog,	0.976	0.929	0.459	3.1e-99
UNIPROTKB|Q566E2	438	Dnajc7 "Dnajc7 protein" [Rattu	0.914	0.981	0.462	1.6e-93

FB|FBgn0032586 Tpr2 "Tetratricopeptide repeat protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
 Identities = 215/467 (46%), Positives = 295/467 (63%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE+ K+ GN QYK + Y  ALK Y++AIS+CP+ AAYYGNRAACYMML  Y  AL DA+ 
Sbjct:    49 AEEKKKLGNDQYKAQNYQNALKLYTDAISLCPDSAAYYGNRAACYMMLLNYNSALTDARH 108

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
             A+ +DP F K  +R  KC +ALGD       +K + EL+  + A+A E  A + + +  E
Sbjct:   109 AIRIDPGFEKAYVRVAKCCLALGDIIGTEQAVKMVNELNSLSTAVAAEQTAAQKL-RQLE 167

Query:   124 GASKA-FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
                +A ++   YR+ +FYLD A+    A   Y+L+KAECLA L R  EA +IA S++  D
Sbjct:   168 ATIQANYDTKSYRSVVFYLDSALKLAPACLKYRLLKAECLAFLGRCDEALDIAVSVMKLD 227

Query:   183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEK 242
               + DA++VRGLCLYY D +D  + HF+  L L PDH K+K+   +          GN  
Sbjct:   228 TTSADAIYVRGLCLYYADNLDKGILHFERALTLDPDHYKSKQMRSKCKQLKEMKENGNML 287

Query:   243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
             F +G+ +EA  IYT+ALKID  N +INSKLL+NRA V  ++G   EA+ADC   LE +  
Sbjct:   288 FKSGRYREAHVIYTDALKIDEHNKDINSKLLYNRALVNTRIGNLREAVADCNRVLELNSQ 347

Query:   303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIL 362
             YLKAL  R +C++ L +++E V D E   +++ + E    L EAK  L++S+ KDYYKIL
Sbjct:   348 YLKALLLRARCYNDLEKFEESVADYETALQLEKTPEIKRMLREAKFALEKSKRKDYYKIL 407

Query:   363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
             G+ +NAS D+IKKAYRK+ALVHHPDRH N++  ++ E+E  FKEVGEAY ILSD  K+SR
Sbjct:   408 GIGRNASDDEIKKAYRKKALVHHPDRHANSSAEERKEEELKFKEVGEAYAILSDAHKKSR 467

Query:   423 YDRGEDIMEDSGMGGHAGANLFEQHMFQTYFD-PGCRARGSNVRFQY 468
             YD G+DI E         A+     MF+T+F   G     S+  F++
Sbjct:   468 YDSGQDIEEQEQ------ADFDPNQMFRTFFQFNGGGRNNSSFNFEF 508

GO:0005575 "cellular_component" evidence=ND

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

UNIPROTKB|F1NPY5 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 208/443 (46%), Positives = 283/443 (63%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE  KE GN  Y  K Y++A   Y++AI  CPN A+YYGNRAA  MMLG +  AL DA+ 
Sbjct:     3 AESFKEQGNAYYAKKDYNEAYNYYTKAIDTCPNNASYYGNRAATLMMLGRFREALGDAQQ 62

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
             +V LD  F +G +R+ KC+++LG+A  A    + + ELD  N    QE K   T+ +  +
Sbjct:    63 SVRLDDSFVRGHLREGKCHLSLGNAMAASRCFQRVLELDHKNTQAQQELKNASTVLEYEK 122

Query:   124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
              A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D 
Sbjct:   123 IAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLALLGRYPEAQSVASDILRMDS 182

Query:   184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEKF 243
              N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    +           GN+ F
Sbjct:   183 TNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKAF 242

Query:   244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
               G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K  EAI DCT A++ D  Y
Sbjct:   243 KEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEEAIDDCTNAVKLDETY 302

Query:   304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
             +KA  RR +C+    QY++ V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKILG
Sbjct:   303 IKAYLRRAQCYMDTEQYEDAVRDYEKVYQTEKTKEHKQLLKNAQMELKKSKRKDYYKILG 362

Query:   364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
             V KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++RY
Sbjct:   363 VDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKARY 422

Query:   424 DRGEDIMEDS-GMGGHAGANLFE 445
             D G+D+ ED   MG     N+F+
Sbjct:   423 DSGQDLEEDGLNMGDFDANNIFK 445

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

UNIPROTKB|F1NPY6 DNAJC7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1014 (362.0 bits), Expect = 2.6e-102, P = 2.6e-102
 Identities = 208/443 (46%), Positives = 283/443 (63%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE  KE GN  Y  K Y++A   Y++AI  CPN A+YYGNRAA  MMLG +  AL DA+ 
Sbjct:    20 AESFKEQGNAYYAKKDYNEAYNYYTKAIDTCPNNASYYGNRAATLMMLGRFREALGDAQQ 79

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
             +V LD  F +G +R+ KC+++LG+A  A    + + ELD  N    QE K   T+ +  +
Sbjct:    80 SVRLDDSFVRGHLREGKCHLSLGNAMAASRCFQRVLELDHKNTQAQQELKNASTVLEYEK 139

Query:   124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
              A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D 
Sbjct:   140 IAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLALLGRYPEAQSVASDILRMDS 199

Query:   184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEKF 243
              N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    +           GN+ F
Sbjct:   200 TNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKAF 259

Query:   244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
               G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K  EAI DCT A++ D  Y
Sbjct:   260 KEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLEEAIDDCTNAVKLDETY 319

Query:   304 LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILG 363
             +KA  RR +C+    QY++ V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKILG
Sbjct:   320 IKAYLRRAQCYMDTEQYEDAVRDYEKVYQTEKTKEHKQLLKNAQMELKKSKRKDYYKILG 379

Query:   364 VTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY 423
             V KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++RY
Sbjct:   380 VDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKARY 439

Query:   424 DRGEDIMEDS-GMGGHAGANLFE 445
             D G+D+ ED   MG     N+F+
Sbjct:   440 DSGQDLEEDGLNMGDFDANNIFK 462

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

UNIPROTKB|E2QWR5 DNAJC7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 219/472 (46%), Positives = 299/472 (63%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE  KE GN  Y  K Y++A   Y++AI +CP  A+YYGNRAA  MMLG +  AL DA+ 
Sbjct:    28 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGKFREALGDAQQ 87

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTA-RSNLKALQELDPDNPAIAQESKALETMAKNF 122
             +V LD  F +G +R+ KC+++LG+A  A RS  +AL ELD  N    QE K    + +  
Sbjct:    88 SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRAL-ELDHKNAQAHQEFKNANAVIEYE 146

Query:   123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
             + A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D
Sbjct:   147 KIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMD 206

Query:   183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEK 242
               N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    +           GN+ 
Sbjct:   207 STNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKA 266

Query:   243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
             F  G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K ++AI DCT A++ D  
Sbjct:   267 FKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTSAVKLDAT 326

Query:   303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIL 362
             Y+KA  RR +C+    QY+E V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKIL
Sbjct:   327 YIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKIL 386

Query:   363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
             GV KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++R
Sbjct:   387 GVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTR 446

Query:   423 YDRGEDIMEDSGMG-GHAGANLFEQHMFQTYFD-PG---CRARG-SNVRFQY 468
             YD G+D+ E+ GM  G   AN    ++F+ +F  PG     A G  N  FQ+
Sbjct:   447 YDSGQDLDEE-GMNMGDFDAN----NIFKAFFGGPGGFSFEASGPGNFFFQF 493

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1S0P4 DNAJC7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 219/472 (46%), Positives = 299/472 (63%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE  KE GN  Y  K Y++A   Y++AI +CP  A+YYGNRAA  MMLG +  AL DA+ 
Sbjct:    28 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQ 87

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTA-RSNLKALQELDPDNPAIAQESKALETMAKNF 122
             +V LD  F +G +R+ KC+++LG+A  A RS  +AL ELD  N    QE K    + +  
Sbjct:    88 SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRAL-ELDHKNAQAQQEFKNANAVIEYE 146

Query:   123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
             + A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D
Sbjct:   147 KIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMD 206

Query:   183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEK 242
               N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    +           GN+ 
Sbjct:   207 STNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKA 266

Query:   243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
             F  G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K ++AI DCT A++ D  
Sbjct:   267 FKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTHAVKLDDT 326

Query:   303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIL 362
             Y+KA  RR +C+    QY+E V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKIL
Sbjct:   327 YIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKIL 386

Query:   363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
             GV KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++R
Sbjct:   387 GVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTR 446

Query:   423 YDRGEDIMEDSGMG-GHAGANLFEQHMFQTYFD-PG---CRARG-SNVRFQY 468
             YD G+D+ E+ GM  G   AN    ++F+ +F  PG     A G  N  FQ+
Sbjct:   447 YDSGQDLDEE-GMNMGDFDAN----NIFKAFFGGPGGFSFEASGPGNFFFQF 493

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q99615 DNAJC7 "DnaJ homolog subfamily C member 7" [Homo sapiens (taxid:9606)]

 Score = 1001 (357.4 bits), Expect = 6.2e-101, P = 6.2e-101
 Identities = 209/444 (47%), Positives = 286/444 (64%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE  KE GN  Y  K Y++A   Y++AI +CP  A+YYGNRAA  MMLG +  AL DA+ 
Sbjct:    28 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQ 87

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTA-RSNLKALQELDPDNPAIAQESKALETMAKNF 122
             +V LD  F +G +R+ KC+++LG+A  A RS  +AL ELD  N    QE K    + +  
Sbjct:    88 SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRAL-ELDHKNAQAQQEFKNANAVMEYE 146

Query:   123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
             + A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D
Sbjct:   147 KIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRMD 206

Query:   183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEK 242
               N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    +           GN+ 
Sbjct:   207 STNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACIACRNAKALKAKKEDGNKA 266

Query:   243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
             F  G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K ++AI DCT A++ D  
Sbjct:   267 FKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDT 326

Query:   303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIL 362
             Y+KA  RR +C+    QY+E V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKIL
Sbjct:   327 YIKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKIL 386

Query:   363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
             GV KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++R
Sbjct:   387 GVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTR 446

Query:   423 YDRGEDIMEDS-GMGGHAGANLFE 445
             YD G+D+ E+   MG     N+F+
Sbjct:   447 YDSGQDLDEEGMNMGDFDPNNIFK 470

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IDA

GO:0006457 "protein folding" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1928373 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Mus musculus (taxid:10090)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 218/472 (46%), Positives = 299/472 (63%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE  KE GN  Y  K Y++A   Y++AI +CPN A+YYGNRAA  MMLG +  AL DA+ 
Sbjct:    28 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPNNASYYGNRAATLMMLGRFREALGDAQQ 87

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTA-RSNLKALQELDPDNPAIAQESKALETMAKNF 122
             +V LD  F +G +R+ KC+++LG+A  A RS  +AL ELD  N    QE K    + +  
Sbjct:    88 SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRAL-ELDHKNAQAQQEFKNANAVMEYE 146

Query:   123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
             + A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D
Sbjct:   147 KIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMD 206

Query:   183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEK 242
               N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    +           GN+ 
Sbjct:   207 STNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACVACRNAKALKAKKEDGNKA 266

Query:   243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
             F  G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ +  +AI DCT A++ D  
Sbjct:   267 FKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLRQLEDAIEDCTNAVKLDDT 326

Query:   303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIL 362
             Y+KA  RR +C+    Q++E V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKIL
Sbjct:   327 YIKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKIL 386

Query:   363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
             GV KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++R
Sbjct:   387 GVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTR 446

Query:   423 YDRGEDIMEDSGMG-GHAGANLFEQHMFQTYFD-PG---CRARG-SNVRFQY 468
             YD G+D+ E+ GM  G   AN    ++F+ +F  PG     A G  N  FQ+
Sbjct:   447 YDSGQDLDEE-GMNMGDFDAN----NIFKAFFGGPGGFSFEASGPGNFYFQF 493

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

UNIPROTKB|G3V8B8 Dnajc7 "Protein Dnajc7" [Rattus norvegicus (taxid:10116)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 218/472 (46%), Positives = 298/472 (63%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE  KE GN  Y  K Y++A   Y++AI +CP  A+YYGNRAA  MMLG +  AL DA+ 
Sbjct:    28 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQ 87

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTA-RSNLKALQELDPDNPAIAQESKALETMAKNF 122
             +V LD  F +G +R+ KC+++LG+A  A RS  +AL ELD  N    QE K    + +  
Sbjct:    88 SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRAL-ELDHKNAQAQQEFKNANAVMEYE 146

Query:   123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
             + A   FE  D+R  +F +DRA++   A   +K++KAECLA L R  EAQ +A+ IL  D
Sbjct:   147 KIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQFVASDILRMD 206

Query:   183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEK 242
               N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    +           GN+ 
Sbjct:   207 STNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKA 266

Query:   243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
             F  G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K  +AI DCT A++ D  
Sbjct:   267 FKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDT 326

Query:   303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIL 362
             Y+KA  RR +C+    Q++E V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKIL
Sbjct:   327 YVKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKIL 386

Query:   363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
             GV KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++R
Sbjct:   387 GVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTR 446

Query:   423 YDRGEDIMEDSGMG-GHAGANLFEQHMFQTYFD-PG---CRARG-SNVRFQY 468
             YD G+D+ E+ GM  G   AN    ++F+ +F  PG     A G  N  FQ+
Sbjct:   447 YDSGQDLDEE-GMNMGDFDAN----NIFKAFFGGPGGFSFEASGPGNFYFQF 493

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

RGD|1303226 Dnajc7 "DnaJ (Hsp40) homolog, subfamily C, member 7" [Rattus norvegicus (taxid:10116)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 217/472 (45%), Positives = 297/472 (62%)

Query:     4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             AE  KE GN  Y  K Y++A   Y++AI +CP  A+YYGNRAA  MMLG +  AL DA+ 
Sbjct:    28 AESFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKNASYYGNRAATLMMLGRFREALGDAQQ 87

Query:    64 AVSLDPRFSKGLIRQIKCNIALGDAPTA-RSNLKALQELDPDNPAIAQESKALETMAKNF 122
             +V LD  F +G +R+ KC+++LG+A  A RS  +AL ELD  N    QE K    + +  
Sbjct:    88 SVRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRAL-ELDHKNAQAQQEFKNANAVMEYE 146

Query:   123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
             + A   FE  D+R  +F +DRA++   A   +K++KAE LA L R  EAQ +A+ IL  D
Sbjct:   147 KIAEVDFEKRDFRKVVFCMDRALEFAPACHRFKILKAEWLAMLGRYPEAQFVASDILRMD 206

Query:   183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEK 242
               N DA++VRGLCLYY+D ++ AV  F   L++APDH KA    +           GN+ 
Sbjct:   207 STNADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDHEKACLACRNAKALKAKKEDGNKA 266

Query:   243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
             F  G  + A+++YTEAL ID  NI  N+KL  NR TV  K+ K  +AI DCT A++ D  
Sbjct:   267 FKEGNYKLAYELYTEALGIDPNNIKTNAKLYCNRGTVNSKLKKLEDAIEDCTNAVKLDDT 326

Query:   303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKIL 362
             Y+KA  RR +C+    Q++E V D EK+Y+ + ++E+   L+ A+  LK+S+ KDYYKIL
Sbjct:   327 YVKAYLRRAQCYMDTEQFEEAVRDYEKVYQTEKTKEHKQLLKNAQLELKKSKRKDYYKIL 386

Query:   363 GVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR 422
             GV KNAS D+IKKAYRKRAL+HHPDRH+ A+   + E+EK FKEVGEA+ ILSDP K++R
Sbjct:   387 GVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTR 446

Query:   423 YDRGEDIMEDSGMG-GHAGANLFEQHMFQTYFD-PG---CRARG-SNVRFQY 468
             YD G+D+ E+ GM  G   AN    ++F+ +F  PG     A G  N  FQ+
Sbjct:   447 YDSGQDLDEE-GMNMGDFDAN----NIFKAFFGGPGGFSFEASGPGNFYFQF 493

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q566E2 Dnajc7 "Dnajc7 protein" [Rattus norvegicus (taxid:10116)]

 Score = 931 (332.8 bits), Expect = 1.6e-93, P = 1.6e-93
 Identities = 205/443 (46%), Positives = 281/443 (63%)

Query:    33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTA- 91
             +CP  A+YYGNRAA  MMLG +  AL DA+ +V LD  F +G +R+ KC+++LG+A  A 
Sbjct:     1 MCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAC 60

Query:    92 RSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS 151
             RS  +AL ELD  N    QE K    + +  + A   FE  D+R  +F +DRA++   A 
Sbjct:    61 RSFQRAL-ELDHKNAQAQQEFKNANAVMEYEKIAEVDFEKRDFRKVVFCMDRALEFAPAC 119

Query:   152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL 211
               +K++KAECLA L R  EAQ +A+ IL  D  N DA++VRGLCLYY+D ++ AV  F  
Sbjct:   120 HRFKILKAECLAMLGRYPEAQFVASDILRMDSTNADALYVRGLCLYYEDCIEKAVQFFVQ 179

Query:   212 LLKLAPDHAKAKETYKRXXXXXXXXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSK 271
              L++APDH KA    +           GN+ F  G  + A+++YTEAL ID  NI  N+K
Sbjct:   180 ALRMAPDHEKACLACRNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNNIKTNAK 239

Query:   272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIY 331
             L  NR TV  K+ K  +AI DCT A++ D  Y+KA  RR +C+    Q++E V D EK+Y
Sbjct:   240 LYCNRGTVNSKLKKLEDAIEDCTNAVKLDDTYVKAYLRRAQCYMDTEQFEEAVRDYEKVY 299

Query:   332 KMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN 391
             + + ++E+   L+ A+  LK+S+ KDYYKILGV KNAS D+IKKAYRKRAL+HHPDRH+ 
Sbjct:   300 QTEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSG 359

Query:   392 ATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMG-GHAGANLFEQHMFQ 450
             A+   + E+EK FKEVGEA+ ILSDP K++RYD G+D+ E+ GM  G   AN    ++F+
Sbjct:   360 ASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQDLDEE-GMNMGDFDAN----NIFK 414

Query:   451 TYFD-PG---CRARG-SNVRFQY 468
              +F  PG     A G  N  FQ+
Sbjct:   415 AFFGGPGGFSFEASGPGNFYFQF 437

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0070389 "chaperone cofactor-dependent protein refolding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54IP0	DNJC7_DICDI	No assigned EC number	0.3634	0.9489	0.8274	yes	N/A
Q5R8D8	DNJC7_PONAB	No assigned EC number	0.4796	0.9382	0.8927	yes	N/A
Q9QYI3	DNJC7_MOUSE	No assigned EC number	0.4796	0.9382	0.8927	yes	N/A
Q99615	DNJC7_HUMAN	No assigned EC number	0.4819	0.9382	0.8927	yes	N/A
Q9HGM9	DNJC7_SCHPO	No assigned EC number	0.3883	0.8553	0.8445	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	470
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-29
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	1e-28
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	7e-28
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-23
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	7e-23
pfam00226	63	pfam00226, DnaJ, DnaJ domain	8e-23
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	3e-22
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	4e-22
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	5e-21
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	1e-20
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	1e-20
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-20
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-20
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	9e-20
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	2e-19
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	3e-19
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	3e-19
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	6e-19
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	6e-19
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	7e-19
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-18
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	1e-18
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-18
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	8e-18
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	1e-17
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	2e-17
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	8e-17
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	1e-16
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-16
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	6e-15
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	1e-14
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	5e-14
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	5e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-12
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-12
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	6e-12
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-11
COG5407	610	COG5407, SEC63, Preprotein translocase subunit Sec	2e-10
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	2e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-10
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	5e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-07
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-07
PRK09430	267	PRK09430, djlA, Dna-J like membrane chaperone prot	6e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-06
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-05
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	2e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	2e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-04
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	4e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	4e-04
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	6e-04
PRK03578	176	PRK03578, hscB, co-chaperone HscB; Provisional	8e-04
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	0.001
PTZ00341	1136	PTZ00341, PTZ00341, Ring-infected erythrocyte surf	0.002

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score =  117 bits (295), Expect = 3e-29
 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 12/118 (10%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY+ILGV+K+AS ++IKKAYRK A  +HPDR+    +A    +EK FKE+ EAY +LS
Sbjct: 4   RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEA----EEK-FKEINEAYEVLS 58

Query: 416 DPTKRSRYDR-GEDIMEDSGMGG----HAGANLFEQHMFQTYFDPGCRARGSNVRFQY 468
           DP KR+ YD+ G    +  G GG      G +  +  +F+ +F  G   R    R + 
Sbjct: 59  DPEKRAAYDQFGHAGFKAGGFGGFGFGGFGGDFGD--IFEDFFGGGGGGRRRPNRPRR 114

Length = 371

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score =  115 bits (290), Expect = 1e-28
 Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 7/94 (7%)

Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           DYY+ILGV+K+AS ++IKKAYRK A  +HPDR+ +       E E+ FKE+ EAY +LSD
Sbjct: 1   DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDK------EAEEKFKEINEAYEVLSD 54

Query: 417 PTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMF 449
           P KR++YD+ G       G GG  G N F+   F
Sbjct: 55  PEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFF 88

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score =  113 bits (286), Expect = 7e-28
 Identities = 49/116 (42%), Positives = 67/116 (57%), Gaps = 12/116 (10%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY++LGV++NAS D+IKKAYRK A+ +HPDR+    +A     E+ FKE+ EAY +LS
Sbjct: 4   RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEA-----EEKFKEIKEAYEVLS 58

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAG-----ANLFEQHMFQTYFDPGCRARGSNVR 465
           DP KR+ YD+ G    E  G GG  G      ++F   +F   F  G        R
Sbjct: 59  DPQKRAAYDQYGHAAFEQGGGGGGFGGGGGFGDIFGD-IFGDIFGGGRGGGRQRAR 113

Length = 371

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score =  100 bits (251), Expect = 3e-23
 Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 9/115 (7%)

Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
              +DYY+ILGVT++AS ++IKK+YRK A+ +HPDR+    +A     E+LFKE  EAY 
Sbjct: 1   MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEA-----EELFKEAAEAYE 55

Query: 413 ILSDPTKRSRYDR-GEDIMEDSGMGGHAG-ANLFEQ--HMFQTYFDPGCRARGSN 463
           +LSDP KR  YD+ G + +  +G  G +G  ++F     +F+ +F  G   RG +
Sbjct: 56  VLSDPKKRGIYDQYGHEGLSGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGRRGRS 110

Length = 366

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 99.5 bits (248), Expect = 7e-23
 Identities = 45/94 (47%), Positives = 63/94 (67%), Gaps = 9/94 (9%)

Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
           +E +DYY++LGV+K A+ D+IKKAYRK+A+ +HPD++    +A     E+ FKE  EAY 
Sbjct: 2   AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEA-----EEKFKEAAEAYD 56

Query: 413 ILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQ 446
           +LSDP KRSRYD+       +G+GG AG   F  
Sbjct: 57  VLSDPDKRSRYDQ----FGHAGVGGAAGGGGFSG 86

Length = 386

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 91.1 bits (227), Expect = 8e-23
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 5/68 (7%)

Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           DYY+ILGV ++AS ++IKKAYRK AL +HPD++     A     E+ FKE+ EAY +LSD
Sbjct: 1   DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAA-----EEKFKEINEAYEVLSD 55

Query: 417 PTKRSRYD 424
           P KR+ YD
Sbjct: 56  PEKRAIYD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 97.6 bits (243), Expect = 3e-22
 Identities = 51/134 (38%), Positives = 74/134 (55%), Gaps = 30/134 (22%)

Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
           +  +DYY+ILG++K+AS +DIKKAYRK A+ +HPD++      +K      FKE+ EAY 
Sbjct: 2   ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEK------FKEISEAYA 55

Query: 413 ILSDPTKRSRYDR-----------GEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRA-- 459
           +LSD  KR++YDR            EDI   +  GG      F   +F+ +F  G R   
Sbjct: 56  VLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGG------FGD-IFEMFFGGGGRRGR 108

Query: 460 ----RGSNVRFQYY 469
               RGS++R+  Y
Sbjct: 109 MGPRRGSDLRYDLY 122

Length = 377

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 97.1 bits (242), Expect = 4e-22
 Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY++LGV+++AS D+IKKAYRK AL +HPDR+ +  +A     E+ FKE  EAY +L 
Sbjct: 4   RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEA-----EQKFKEAAEAYEVLR 58

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGAN 442
           D  KR+RYDR G   +  +G  G   + 
Sbjct: 59  DAEKRARYDRFGHAGVNGNGGFGGFSSA 86

Length = 373

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 94.0 bits (234), Expect = 5e-21
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 12/114 (10%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY++LGV+K+AS D+IKKAYRK +  +HPD +      +K      FKE+ EAY +LS
Sbjct: 4   RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEK------FKEISEAYEVLS 57

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFE-----QHMFQTYFDPGCRARGSN 463
           D  KR++YD+ G         GG  G   F      + +F ++F  G R R  N
Sbjct: 58  DDQKRAQYDQFGHAGPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGRRRDPN 111

Length = 376

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 38/87 (43%), Positives = 49/87 (56%), Gaps = 5/87 (5%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KD+YK LGV+ +AS+++IKKAYRK A   HPD +     A     E+ FK V EA+ +LS
Sbjct: 9   KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAA-----EERFKAVSEAHDVLS 63

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGAN 442
           DP KR  YD    +    G GG     
Sbjct: 64  DPAKRKEYDETRRLFAGGGFGGRRFDG 90

Length = 392

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 9/103 (8%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYY++LG+ K AS D+IKKA+RK A+ +HPD++    +A     E+ FKE+ EAY +LS
Sbjct: 4   KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEA-----EEKFKEINEAYQVLS 58

Query: 416 DPTKRSRYDR-GEDIMEDSG---MGGHAGANLFEQHMFQTYFD 454
           DP K+++YD+ G      +G    GG  G +  +   F   FD
Sbjct: 59  DPQKKAQYDQFGTADFNGAGGFGSGGFGGFDFSDMGGFGDIFD 101

Length = 380

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 92.6 bits (230), Expect = 2e-20
 Identities = 45/86 (52%), Positives = 56/86 (65%), Gaps = 7/86 (8%)

Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           DYY ILGV+K AS ++IKKAYRK A+ +HPD++    +A     EK FKEV EAY +LSD
Sbjct: 2   DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEA-----EKRFKEVSEAYEVLSD 56

Query: 417 PTKRSRYDR-GED-IMEDSGMGGHAG 440
             KR  YDR G+D     +G  G AG
Sbjct: 57  AQKRESYDRYGKDGPFAGAGGFGGAG 82

Length = 391

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 91.3 bits (227), Expect = 4e-20
 Identities = 48/114 (42%), Positives = 64/114 (56%), Gaps = 8/114 (7%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY +LGV++NAS  +IK+AYRK A   HPD   N  +     QEK FKE+  AY +LS
Sbjct: 3   RDYYGLLGVSRNASDAEIKRAYRKLARELHPD--VNPDEEA---QEK-FKEISVAYEVLS 56

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGANLFEQ--HMFQTYFDPGCRARGSNVRFQ 467
           DP KR   D G D +E +G GG      F     +F+ +F  G  +RG   R +
Sbjct: 57  DPEKRRIVDLGGDPLESAGGGGGGFGGGFGGLGDVFEAFFGGGAASRGPRGRVR 110

Length = 378

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 90.4 bits (225), Expect = 9e-20
 Identities = 40/103 (38%), Positives = 59/103 (57%), Gaps = 17/103 (16%)

Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           DYY+ILGV+++A  D++K+AYR+ A  +HPD +           E  FKE+  AY +LSD
Sbjct: 4   DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG------AEDRFKEINRAYEVLSD 57

Query: 417 PTKRSRYDR-GEDIMEDSGMGGHAGANLFEQ-----HMFQTYF 453
           P  R+RYD+ GE     +G+ G AG            +F+T+F
Sbjct: 58  PETRARYDQFGE-----AGVSGAAGFPDMGDMGGFADIFETFF 95

Length = 374

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 89.1 bits (221), Expect = 2e-19
 Identities = 41/85 (48%), Positives = 55/85 (64%), Gaps = 5/85 (5%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYY+ILGV +NA+ ++IKKAYR+ A  +HPD +    +A     E+ FKE+ EAY ILS
Sbjct: 5   KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEA-----EQKFKEINEAYEILS 59

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAG 440
           DP KR++YD+      D G  G  G
Sbjct: 60  DPQKRAQYDQFGHAAFDPGGFGQGG 84

Length = 386

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 88.7 bits (220), Expect = 3e-19
 Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 4/72 (5%)

Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
           E KDYY+ILGV++NA+ ++IK+AY++     HPDRH       + E E+ FKE+ EAY +
Sbjct: 2   EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPE----NRKEAEQKFKEIQEAYEV 57

Query: 414 LSDPTKRSRYDR 425
           LSDP KR+ YDR
Sbjct: 58  LSDPQKRAMYDR 69

Length = 369

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 80.7 bits (200), Expect = 3e-19
 Identities = 36/64 (56%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
            DYY+ILGV ++AS D+IKKAYRK AL +HPD++       K E E+ FKE+ EAY +LS
Sbjct: 1   TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPG----DKEEAEEKFKEINEAYEVLS 56

Query: 416 DPTK 419
           DP K
Sbjct: 57  DPEK 60

Length = 60

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 87.9 bits (218), Expect = 6e-19
 Identities = 43/105 (40%), Positives = 56/105 (53%), Gaps = 21/105 (20%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYY+ILGV++NA+ ++IKKAYR+ A  +HPD + N       E E+ FKE+ EAY +LS
Sbjct: 3   KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP------EAEEKFKEINEAYQVLS 56

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHA-----GANLFEQHMFQTYFDP 455
           DP KR  YD            GHA     G     Q  F  +   
Sbjct: 57  DPEKRKLYD----------QFGHAAFSGSGQQQQGQEGFSDFGGG 91

Length = 382

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 88.0 bits (218), Expect = 6e-19
 Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 5/86 (5%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYYK+LGV K+A+  +IKKAYRK A  +HPD +    +A     E+ FKE+ EAY +LS
Sbjct: 9   KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKA-----EERFKEISEAYDVLS 63

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGA 441
           D  KR  YD    +  + G     G 
Sbjct: 64  DEKKRKEYDEARSLFGNGGFRPGPGG 89

Length = 389

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 87.9 bits (218), Expect = 7e-19
 Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 13/115 (11%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY++LGV+++A  D+IKKAYRK AL +HPD++ +  +A     E+ FKEV EAY +LS
Sbjct: 3   RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEA-----EEHFKEVNEAYEVLS 57

Query: 416 DPTKRSRYDR------GEDIMEDSGMGGHAGANLFEQ--HMFQTYFDPGCRARGS 462
           +  KR RYD+      G       G G   G   F      F   F  G R  G 
Sbjct: 58  NDDKRRRYDQFGHAGVGSSAASGGGPGYGGGGGDFNDIFSAFNDMFGGGARRGGG 112

Length = 397

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 86.8 bits (215), Expect = 1e-18
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 10/101 (9%)

Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
           +E +DYY++LGV +NA   +IKKAYRK A  +HPD       +++   E+ FKE+ EAY 
Sbjct: 2   AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD------VSEEEGAEEKFKEISEAYA 55

Query: 413 ILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYF 453
           +LSD  KR RYD+       +GM G +  ++F    F+  F
Sbjct: 56  VLSDDEKRQRYDQ----FGHAGMDGFSQEDIFNNINFEDIF 92

Length = 378

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 86.9 bits (215), Expect = 1e-18
 Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 6/69 (8%)

Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           DYY++LGV++ AS+D+IK AYRK AL +HPDR+     A+K      F ++ EAY +LSD
Sbjct: 3   DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEK------FAQINEAYAVLSD 56

Query: 417 PTKRSRYDR 425
             KR+ YDR
Sbjct: 57  AEKRAHYDR 65

Length = 371

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 85.8 bits (212), Expect = 3e-18
 Identities = 44/82 (53%), Positives = 54/82 (65%), Gaps = 6/82 (7%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYYKILGV +NAS +DIKKA+R+ A   HPD H       K E E+ FKE+ EAY +LS
Sbjct: 3   KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPG----NKAEAEEKFKEISEAYEVLS 58

Query: 416 DPTKRSRYDRGEDIMEDSGMGG 437
           DP KR +YD+   +  D G GG
Sbjct: 59  DPQKRRQYDQTGTV--DFGAGG 78

Length = 365

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 84.8 bits (210), Expect = 8e-18
 Identities = 39/86 (45%), Positives = 51/86 (59%), Gaps = 6/86 (6%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
            +YY  LGV+K+AS D+IKKAYRK +  +HPD +      +K      +KEV EAY  LS
Sbjct: 4   TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEK------YKEVQEAYETLS 57

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGA 441
           DP KR+ YD+      + G GG AG 
Sbjct: 58  DPQKRAAYDQYGAAGANGGFGGGAGG 83

Length = 380

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 82.7 bits (204), Expect = 1e-17
 Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYY ILGV KNAS D+IKKA++K A  +HPD + +         E+ FKE+ EAY +LS
Sbjct: 4   KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP------GAEEKFKEINEAYTVLS 57

Query: 416 DPTKRSRYDR 425
           DP KR  YD 
Sbjct: 58  DPEKRRIYDT 67

Length = 291

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 75.7 bits (187), Expect = 2e-17
 Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 5/60 (8%)

Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           DYY ILGV  +AS ++IKKAYRK AL +HPD++ +  +A     E+ FKE+ EAY +LSD
Sbjct: 1   DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEA-----EEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 81.8 bits (202), Expect = 8e-17
 Identities = 41/110 (37%), Positives = 64/110 (58%), Gaps = 12/110 (10%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +  Y++L ++K+ ++ +IKKAYRK A+ HHPD+          + EK FKE+  AY +LS
Sbjct: 28  EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG--------DPEK-FKEISRAYEVLS 78

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNV 464
           DP KR  YD  GE+ +E       A ++LF+  +F     PG + RG ++
Sbjct: 79  DPEKRKIYDEYGEEGLEGGEQPADA-SDLFD-LIFGGGRKPGGKKRGEDI 126

Length = 421

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 80.8 bits (199), Expect = 1e-16
 Identities = 46/107 (42%), Positives = 67/107 (62%), Gaps = 14/107 (13%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY+ILG++K AS D+IKKAYRK A+ +HPD++    +A     E +FKE  EAY +L 
Sbjct: 3   RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEA-----ESIFKEATEAYEVLI 57

Query: 416 DPTKRSRYDR-GEDIMEDSGM-----GGHAG-ANLFEQ--HMFQTYF 453
           D  KR++YDR G    E  G      GG +G +++FE    +F ++F
Sbjct: 58  DDNKRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFF 104

Length = 365

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 80.1 bits (197), Expect = 2e-16
 Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY++LGV +NAS D++KKAYRK A  +HPD +      +  + E  FKEV EAY  LS
Sbjct: 4   RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVN------KAPDAEDKFKEVKEAYDTLS 57

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGANLFE--QHMFQTYFDPGCRARGSNVRFQ 467
           DP K++ YD+      + G GG  GA  F     +F  +F  G   R  N   Q
Sbjct: 58  DPQKKAHYDQFGHTDPNQGFGG-GGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQ 110

Length = 371

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 77.2 bits (189), Expect = 6e-15
 Identities = 34/100 (34%), Positives = 58/100 (58%), Gaps = 13/100 (13%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY++LG+ ++A   +IKKA+RK A  +HPDR+         +   +F E+ EA  +LS
Sbjct: 2   RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAP------DAASIFAEINEANDVLS 55

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFD 454
           +P KR+ YD+ G D     G+      + F+  +F ++F+
Sbjct: 56  NPKKRANYDKYGHD-----GVDREDDFD-FQADVFNSFFE 89

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 74.6 bits (183), Expect = 1e-14
 Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 6/87 (6%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           + YY ILGV+K+A+ ++IK AYRK A+ +HPD++    ++     E+ FKE  EAY IL 
Sbjct: 4   RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKES-----EEKFKEATEAYEILR 58

Query: 416 DPTKRSRYDRGEDIMEDSGMGGH-AGA 441
           DP KR  YD+      ++G GG   GA
Sbjct: 59  DPKKRQAYDQFGKAGVNAGAGGFGQGA 85

Length = 372

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 73.1 bits (179), Expect = 5e-14
 Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 22/127 (17%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY+ILGV+K AS  D+KKAY K A  +HPD  T+A  A     EK FKE+  AY +L 
Sbjct: 3   QDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDA-----EKKFKEINAAYDVLK 56

Query: 416 DPTKRSRYDR-GEDIMEDS----GMGGHAGANLFEQHMFQTYFD-----------PGCRA 459
           D  KR+ YDR G D  ++     G G H G +     +F  +F               + 
Sbjct: 57  DEQKRAAYDRFGHDAFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKV 116

Query: 460 RGSNVRF 466
           RGS++++
Sbjct: 117 RGSDLKY 123

Length = 372

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 71.4 bits (174), Expect = 5e-14
 Identities = 39/73 (53%), Positives = 51/73 (69%), Gaps = 4/73 (5%)

Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
           S++ DYY+ILGV  NAS ++IKKAYRK AL +HPDR+           E+ FKE+ EAY 
Sbjct: 3   SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGD----PKVAEEKFKEINEAYE 58

Query: 413 ILSDPTKRSRYDR 425
           ILSDP +R+ YD+
Sbjct: 59  ILSDPERRAEYDK 71

Length = 237

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 36/100 (36%), Positives = 48/100 (48%)

Query: 5   EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLA 64
           E     GN  YKL  Y +AL+ Y +A+ + P+ A  Y N AA Y  LG Y  AL+D + A
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 65  VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD 104
           + LDP  +K           LG    A    +   ELDP+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD 292
           +A    GN  +  G   EA + Y +AL++D  N        +N A   +K+GKY EA+ D
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALED 56

Query: 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
              ALE DP+  KA       ++ LG+Y+E +   EK  ++D
Sbjct: 57  YEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 67.0 bits (163), Expect = 4e-12
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 10/108 (9%)

Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
           YY+IL V K+++ + IKK+YRK AL +HPDR+     A   E E+ FK + EAYG+LSD 
Sbjct: 5   YYEILEVEKHSNQETIKKSYRKLALKYHPDRN-----AGDKEAEEKFKLINEAYGVLSDE 59

Query: 418 TKRSRYDR-GEDIMEDSGMGGHAGANLFEQ--HMFQTYFDPGCRARGS 462
            KR+ YDR G+  +  +G      ++ FE     F+  F  G  ARGS
Sbjct: 60  KKRALYDRYGKKGLNQAGASQSDFSDFFEDLGSFFEDAF--GFGARGS 105

Length = 369

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 66.0 bits (161), Expect = 6e-12
 Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
           E+KDYY I+GV        IK AYR+ A  +HPD           + E  FKEV EA+ +
Sbjct: 2   ELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP------DAEARFKEVAEAWEV 55

Query: 414 LSDPTKRSRYDRGEDIMEDSGMG---GHAGANLFEQHMFQTYF 453
           LSD  +R+ YD+      D        H     F    F   F
Sbjct: 56  LSDEQRRAEYDQLWQHRNDPQFNRQFQHGDGQSFNAEDFDDIF 98

Length = 306

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 66.6 bits (162), Expect = 1e-11
 Identities = 87/331 (26%), Positives = 141/331 (42%), Gaps = 28/331 (8%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A K KE GN  Y+ K ++KA+K YS+AI   P+   YY NRAAC+  LG +   ++D   
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTA 185

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A+ LDP +SK L R+      LG    A  +L A   +D       Q ++A+E + K F 
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN--EQSAQAVERLLKKF- 242

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
             SKA E  + +         +   + S   K  +   L   N L E  E  N  L    
Sbjct: 243 AESKAKEILETKPENLPSVTFVGNYLQSFRPKP-RPAGLEDSNELDE--ETGNGQLQLGL 299

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           ++P++            K D +        + A D  K  E     K   A    G  K 
Sbjct: 300 KSPES------------KADESYEEAARAFEKALDLGKLGE-----KEAIALNLRGTFKC 342

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
           + GK+ EA    ++++++D R   +    +  RA++  ++G  ++A  D   AL+ +   
Sbjct: 343 LKGKHLEALADLSKSIELDPR---VTQSYIK-RASMNLELGDPDKAEEDFDKALKLNSED 398

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
                 R +     G++ +   D +K   +D
Sbjct: 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

 Score = 62.7 bits (152), Expect = 2e-10
 Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 2/84 (2%)

Query: 342 FLEEAKRLLKRSEVK--DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLE 399
           +L    R LK    +  D Y+ILG+ ++ S  DIKK YR  ++  HPD+        + E
Sbjct: 82  YLISNIRTLKIEYRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSE 141

Query: 400 QEKLFKEVGEAYGILSDPTKRSRY 423
            E+ +K + +AYG+L+D  +R  Y
Sbjct: 142 YEEKYKTITKAYGLLTDKKRRENY 165

Length = 610

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 61.9 bits (150), Expect = 2e-10
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYY++LGV+K AS  +I++AYRK A  +HPD + +     K        E+ EA  +L 
Sbjct: 4   KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDK------MVEINEAADVLL 57

Query: 416 DPTKRSRYDR 425
           D  KR +YD+
Sbjct: 58  DKDKRKQYDQ 67

Length = 372

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 3  SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDA 61
          +AE  K  GN  +KL  Y +A++ Y +A+ + P+ A  Y N A  Y+ LG  Y  AL+D 
Sbjct: 2  NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 62 KLAVSLDP 69
          + A+ LDP
Sbjct: 62 EKALELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 28/87 (32%), Positives = 48/87 (55%)

Query: 20  YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79
           ++ A+  Y++AI + PN A  Y +RA   + LG +T A+ DA  A+ LDP  +K  +R+ 
Sbjct: 18  FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

Query: 80  KCNIALGDAPTARSNLKALQELDPDNP 106
              + L +  TA++ L+    L P + 
Sbjct: 78  TACMKLEEYQTAKAALEKGASLAPGDS 104

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG-QYKECVIDA 327
           N++ L N    LFK+G Y+EAI     ALE DP+  +A       +  LG  Y+E + D 
Sbjct: 2   NAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDL 61

Query: 328 EKIYKMD 334
           EK  ++D
Sbjct: 62  EKALELD 68

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 56/331 (16%), Positives = 108/331 (32%), Gaps = 40/331 (12%)

Query: 18  KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR 77
            ++ +A     E ++  P        +    + LG    AL   + A++L P     L+ 
Sbjct: 173 NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232

Query: 78  QIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA------ 131
                I  G+   A  +  AL +  P++P        ++   KN+E A +  +       
Sbjct: 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292

Query: 132 ----------------NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIA 175
                            +   A  YL++ +     S   + + A     L R+ EA    
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352

Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235
           +  L  D  +P A+ + G         + A  +     +L P++A A+     +KL +  
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412

Query: 236 KEEGNEKFVA-------GKNQEAFDIYT--------EALKIDARNI--NINSKLLHN-RA 277
             E                  +   I +        +AL    +      ++  LHN   
Sbjct: 413 PSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLG 472

Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
            +    G   +A      AL  +P++  A +
Sbjct: 473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAA 503

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK-YNEAIA 291
           +A K  GN  F  G   EA + Y +AL++D      N++  +N A    K+GK Y EA+ 
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPD----NAEAYYNLALAYLKLGKDYEEALE 59

Query: 292 DCTLALEKDP 301
           D   ALE DP
Sbjct: 60  DLEKALELDP 69

Length = 69

>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional

 Score = 50.2 bits (121), Expect = 6e-07
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 352 RSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPD 387
              ++D YK+LGV+++    +IK+AYRK    HHPD
Sbjct: 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPD 231

Length = 267

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA 251
            G   Y     D A+ +++  L+L PD+A A   Y  A                GK +EA
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAY--YNLAAAYYKL----------GKYEEA 53

Query: 252 FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
            + Y +AL++D  N     K  +N     +K+GKY EA+     ALE DPN
Sbjct: 54  LEDYEKALELDPDNA----KAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 21/66 (31%), Positives = 35/66 (53%)

Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330
           + L N   + +K+G Y+EA+     ALE DP+   A       ++ LG+Y+E + D EK 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 331 YKMDNS 336
            ++D  
Sbjct: 61  LELDPD 66

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY 286
           +R K     KE+GN+ +      +A  +Y++A++     +        NRA     +G +
Sbjct: 122 ERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-----YYSNRAACHNALGDW 176

Query: 287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA 346
            + + D T ALE DP+Y KAL+RR   +  LG+Y + ++D      +D  R N    +  
Sbjct: 177 EKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFR-NEQSAQAV 235

Query: 347 KRLLKR 352
           +RLLK+
Sbjct: 236 ERLLKK 241

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 12/105 (11%)

Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217
                  L    EA E     L  D  N DA +      Y   K + A+  ++  L+L P
Sbjct: 6   LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP 65

Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
           D+AKA   Y                   GK +EA + Y +AL++D
Sbjct: 66  DNAKAY--YNLGLAYYKL----------GKYEEALEAYEKALELD 98

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 22/97 (22%), Positives = 40/97 (41%)

Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
               +  ++  DY  A+ Y ++A++    +       A     L + +EA E     L  
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
           D  N  A +  GL  Y   K + A+  ++  L+L P+
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.8 bits (109), Expect = 5e-05
 Identities = 65/288 (22%), Positives = 114/288 (39%), Gaps = 28/288 (9%)

Query: 35  PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSN 94
              A     R   Y+ LG    A    + A+++DPR     +   +  +A      AR+ 
Sbjct: 122 EGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181

Query: 95  LKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY 154
           +  +   DP N         L     N E A        YR A+     A+     +   
Sbjct: 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELA-----LAAYRKAI-----ALRPNNIA--V 229

Query: 155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK 214
            L  A  L      +EA++ A+++L     +P A +++ L  +     + A    Q  LK
Sbjct: 230 LLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK 289

Query: 215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH 274
            AP++            L A    G  ++  G  ++A+    + LK    +     +LL 
Sbjct: 290 SAPEY------------LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQA-RRLL- 335

Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
             A++  ++G+ +EAIA  + AL  DP+   ALS   + + ALG +++
Sbjct: 336 --ASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 357 DYYKILGVTK---NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
           D Y +LG++K    A    I KA++K+   +HPD+            ++ FK + +A  +
Sbjct: 44  DLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDK---TAAGGNKGCDEFFKLIQKAREV 100

Query: 414 LSDPTKRSRYD 424
           L D   R +YD
Sbjct: 101 LGDRKLRLQYD 111

Length = 379

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 43/189 (22%), Positives = 61/189 (32%), Gaps = 23/189 (12%)

Query: 49  MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL-----GDAPTARSNLKALQELDP 103
            +   Y       + A  L  + SK      +   AL     G    A   L+ L    P
Sbjct: 280 RIRAKY--EALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQP 337

Query: 104 DNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA 163
           DNP        LE             EAN  + A+  L +A+     S   +L  A+ L 
Sbjct: 338 DNPY------YLELAGD------ILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385

Query: 164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD--KMDLAVNHFQLLLKLAPDHAK 221
              + QEA  I N  L  D ++P+      L   Y +      A+        LA    +
Sbjct: 386 KGGKPQEAIRILNRYLFNDPEDPN--GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443

Query: 222 AKETYKRAK 230
           A     RA 
Sbjct: 444 AIIFLMRAS 452

Length = 484

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
           +K L+N      K+GKY+EA+     ALE +PN 
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 13/143 (9%)

Query: 1   ELSAEKHKEDGNTQYKL----------KQYSKALKCYSEAIS---VCPNVAAYYGNRAAC 47
           E S E  +E GN Q +L          + Y +A + + +A+    +    A     R   
Sbjct: 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTF 340

Query: 48  YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
             + G +  AL D   ++ LDPR ++  I++   N+ LGD   A  +     +L+ ++P 
Sbjct: 341 KCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD 400

Query: 108 IAQESKALETMAKNFEGASKAFE 130
           I      L  +   F  A K ++
Sbjct: 401 IYYHRAQLHFIKGEFAQAGKDYQ 423

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
           ++  E FV      A D+YT+A+ +D  N    ++L  +RA    K+G + EA+AD   A
Sbjct: 7   DKAKEAFVDDDFALAVDLYTQAIDLDPNN----AELYADRAQANIKLGNFTEAVADANKA 62

Query: 297 LEKDPNYLKALSRRCKCFHALGQYK 321
           +E DP+  KA  R+      L +Y+
Sbjct: 63  IELDPSLAKAYLRKGTACMKLEEYQ 87

Length = 356

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 21/216 (9%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G  Q      +KA+  + + +++ P+ A      A  Y ++  Y  A+   K A+ L P 
Sbjct: 608 GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD 667

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
            ++  I   +  +A     +A+   K+LQ+  P           LE              
Sbjct: 668 NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALG----FELE--------GDLYLR 715

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH-LNRLQEAQEIANSILATDKQNPDAV 189
             DY  A+    +A+ +  +S+    +K   L   L       E   ++ A  K +P+  
Sbjct: 716 QKDYPAAIQAYRKALKRAPSSQN--AIK---LHRALLASGNTAEAVKTLEAWLKTHPNDA 770

Query: 190 FVRGLC--LYYDDK-MDLAVNHFQLLLKLAPDHAKA 222
            +R     LY   K  D A+ H+Q ++K APD+A  
Sbjct: 771 VLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVV 806

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
           ++ L+N      K+G Y+EA+     ALE DPN 
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 29/94 (30%), Positives = 45/94 (47%)

Query: 13  TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS 72
             Y+  +Y +ALK +    +  P  + Y+   AAC  ML  Y  A+D   LA +LDP   
Sbjct: 26  NLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85

Query: 73  KGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106
           +      +C +ALG+  +A   L    E+  +NP
Sbjct: 86  RPYFHAAECLLALGEPESALKALDLAIEICGENP 119

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|235133 PRK03578, hscB, co-chaperone HscB; Provisional

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 376 AYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY---DRGEDIMED 432
           AYR      HPDR   A  A+K    +      EAY  L DP KR+RY    RG D+  +
Sbjct: 28  AYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDVQAE 87

Query: 433 S 433
           +
Sbjct: 88  N 88

Length = 176

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 16/141 (11%)

Query: 95  LKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTA--MFYLDRAMDQGVASK 152
           LK L  LD             E + + +  A   ++   Y  A  +F L  A D   +  
Sbjct: 6   LKDLLGLDS------------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRY 53

Query: 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212
              L  A C   L   +EA +      A D  +P   F    CL    + + A+    L 
Sbjct: 54  WLGL--AACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA 111

Query: 213 LKLAPDHAKAKETYKRAKLLK 233
           +++  ++ +  E  +RA+ + 
Sbjct: 112 IEICGENPEYSELKERAEAML 132

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen; Provisional

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
           +Y ILGV  NA   +I + Y K A  ++P + +      K      FK++ EAY IL D 
Sbjct: 575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHK------FKKINEAYQILGDI 628

Query: 418 TKRSRYDR 425
            K+  Y++
Sbjct: 629 DKKKMYNK 636

Length = 1136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	470
KOG0624|consensus	504		100.0
KOG0550|consensus	486		100.0
KOG4626|consensus	966		100.0
KOG4626|consensus	966		100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
KOG0548|consensus	539		100.0
KOG0547|consensus	606		100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.97
KOG1126|consensus	638		99.97
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.97
KOG2002|consensus	1018		99.96
KOG0624|consensus	504		99.96
KOG0547|consensus	606		99.96
KOG1155|consensus	559		99.96
KOG2002|consensus	1018		99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.96
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.96
KOG1126|consensus	638		99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG1155|consensus	559		99.95
KOG1173|consensus	611		99.94
KOG2076|consensus	895		99.94
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.93
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.93
KOG1174|consensus	564		99.92
PRK14574	822	hmsH outer membrane protein; Provisional	99.92
KOG2003|consensus	840		99.92
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.92
PRK14574	822	hmsH outer membrane protein; Provisional	99.92
PRK12370	553	invasion protein regulator; Provisional	99.91
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.91
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.91
KOG1125|consensus	579		99.91
PRK12370	553	invasion protein regulator; Provisional	99.9
KOG0495|consensus	913		99.9
KOG2076|consensus	895		99.89
PRK11189	296	lipoprotein NlpI; Provisional	99.89
KOG0548|consensus	539		99.89
KOG1174|consensus	564		99.88
KOG1129|consensus	478		99.88
KOG1173|consensus	611		99.88
KOG1156|consensus	700		99.88
KOG2003|consensus	840		99.88
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.87
KOG1125|consensus	579		99.87
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.87
KOG0550|consensus	486		99.87
KOG1129|consensus	478		99.87
PRK11189	296	lipoprotein NlpI; Provisional	99.86
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.85
KOG0713|consensus	336		99.85
KOG4162|consensus	799		99.84
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.84
PLN02789	320	farnesyltranstransferase	99.84
PLN02789	320	farnesyltranstransferase	99.84
KOG0712|consensus	337		99.83
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.83
KOG0495|consensus	913		99.83
KOG1156|consensus	700		99.81
KOG4162|consensus	799		99.8
PLN03218	1060	maturation of RBCL 1; Provisional	99.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.79
KOG1840|consensus	508		99.79
KOG1840|consensus	508		99.78
PLN03218	1060	maturation of RBCL 1; Provisional	99.78
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.77
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.77
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.76
PRK14288	369	chaperone protein DnaJ; Provisional	99.76
KOG1127|consensus	1238		99.75
KOG0553|consensus	304		99.75
KOG1127|consensus	1238		99.74
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.74
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.74
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.73
PRK14286	372	chaperone protein DnaJ; Provisional	99.73
PRK14287	371	chaperone protein DnaJ; Provisional	99.73
PRK14296	372	chaperone protein DnaJ; Provisional	99.72
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.72
KOG2376|consensus	652		99.72
PRK14299	291	chaperone protein DnaJ; Provisional	99.71
PRK14285	365	chaperone protein DnaJ; Provisional	99.71
PLN03077	857	Protein ECB2; Provisional	99.71
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.71
PLN03077	857	Protein ECB2; Provisional	99.71
PRK14278	378	chaperone protein DnaJ; Provisional	99.7
PRK14279	392	chaperone protein DnaJ; Provisional	99.7
PRK14301	373	chaperone protein DnaJ; Provisional	99.7
KOG0553|consensus	304		99.69
KOG3785|consensus	557		99.69
KOG1915|consensus	677		99.69
PRK14294	366	chaperone protein DnaJ; Provisional	99.69
PRK14282	369	chaperone protein DnaJ; Provisional	99.69
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.69
PRK14276	380	chaperone protein DnaJ; Provisional	99.69
PRK15359	144	type III secretion system chaperone protein SscB;	99.68
PRK14297	380	chaperone protein DnaJ; Provisional	99.68
PRK14298	377	chaperone protein DnaJ; Provisional	99.68
PRK14295	389	chaperone protein DnaJ; Provisional	99.67
PRK14280	376	chaperone protein DnaJ; Provisional	99.67
KOG1130|consensus	639		99.66
PRK15359	144	type III secretion system chaperone protein SscB;	99.66
PRK10767	371	chaperone protein DnaJ; Provisional	99.65
PRK14281	397	chaperone protein DnaJ; Provisional	99.65
KOG3785|consensus	557		99.65
PRK14284	391	chaperone protein DnaJ; Provisional	99.65
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.64
PRK14277	386	chaperone protein DnaJ; Provisional	99.63
KOG1915|consensus	677		99.63
PRK14292	371	chaperone protein DnaJ; Provisional	99.63
KOG2376|consensus	652		99.63
KOG3060|consensus	289		99.62
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.61
PRK14291	382	chaperone protein DnaJ; Provisional	99.61
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.61
PRK14283	378	chaperone protein DnaJ; Provisional	99.61
KOG0718|consensus	546		99.6
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.6
KOG0719|consensus	264		99.6
PRK14290	365	chaperone protein DnaJ; Provisional	99.6
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.59
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.59
PRK14300	372	chaperone protein DnaJ; Provisional	99.59
PRK04841	903	transcriptional regulator MalT; Provisional	99.58
KOG4340|consensus	459		99.58
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.58
PHA03102	153	Small T antigen; Reviewed	99.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.57
KOG1128|consensus	777		99.57
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.57
KOG3060|consensus	289		99.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.56
PRK14293	374	chaperone protein DnaJ; Provisional	99.56
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.55
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.55
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.54
KOG0691|consensus	296		99.54
PRK14289	386	chaperone protein DnaJ; Provisional	99.53
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.53
KOG1128|consensus	777		99.52
KOG0715|consensus	288		99.52
KOG0717|consensus	508		99.51
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.51
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.51
KOG4648|consensus	536		99.5
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.5
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.5
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.48
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.48
KOG1130|consensus	639		99.44
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.43
KOG0716|consensus	279		99.43
KOG4234|consensus	271		99.42
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.42
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.4
KOG0543|consensus	397		99.4
KOG4234|consensus	271		99.4
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.39
KOG4340|consensus	459		99.38
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.37
KOG0543|consensus	397		99.37
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.36
KOG2047|consensus	835		99.34
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.33
PRK04841	903	transcriptional regulator MalT; Provisional	99.33
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.31
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.3
KOG2047|consensus	835		99.28
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.28
PRK05014	171	hscB co-chaperone HscB; Provisional	99.27
KOG1941|consensus	518		99.25
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.24
PRK01356	166	hscB co-chaperone HscB; Provisional	99.23
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.22
KOG4648|consensus	536		99.22
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.22
PRK15331	165	chaperone protein SicA; Provisional	99.22
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.21
PRK03578	176	hscB co-chaperone HscB; Provisional	99.2
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	99.2
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.2
KOG0721|consensus	230		99.19
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.18
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.18
KOG3081|consensus	299		99.17
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.17
PRK10803	263	tol-pal system protein YbgF; Provisional	99.16
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.15
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.15
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.14
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.14
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.13
PRK11906	458	transcriptional regulator; Provisional	99.13
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.11
PRK00294	173	hscB co-chaperone HscB; Provisional	99.11
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.11
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.11
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.1
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.1
KOG0722|consensus	329		99.1
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.09
PHA02624	647	large T antigen; Provisional	99.08
PF13512	142	TPR_18: Tetratricopeptide repeat	99.06
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	99.05
PRK15331	165	chaperone protein SicA; Provisional	99.05
COG4105	254	ComL DNA uptake lipoprotein [General function pred	99.04
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.04
KOG0714|consensus	306		99.04
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.04
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.03
KOG1070|consensus	1710		99.03
PRK11906	458	transcriptional regulator; Provisional	99.02
COG3898	531	Uncharacterized membrane-bound protein [Function u	99.0
KOG4642|consensus	284		99.0
KOG1941|consensus	518		98.98
PRK10803	263	tol-pal system protein YbgF; Provisional	98.98
KOG0720|consensus	490		98.97
KOG4555|consensus	175		98.96
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.95
KOG3081|consensus	299		98.94
KOG0551|consensus	390		98.94
KOG2053|consensus	932		98.94
KOG0545|consensus	329		98.91
PF12688	120	TPR_5: Tetratrico peptide repeat	98.91
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.9
KOG0376|consensus	476		98.9
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.9
KOG1070|consensus	1710		98.89
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.89
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.88
KOG2300|consensus	629		98.88
PTZ00100	116	DnaJ chaperone protein; Provisional	98.88
KOG1308|consensus	377		98.87
KOG3617|consensus	1416		98.87
PF13371	73	TPR_9: Tetratricopeptide repeat	98.87
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.87
KOG4642|consensus	284		98.86
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.85
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.82
PF13371	73	TPR_9: Tetratricopeptide repeat	98.81
KOG0551|consensus	390		98.81
KOG2471|consensus	696		98.79
PF13512	142	TPR_18: Tetratricopeptide repeat	98.79
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.78
KOG2053|consensus	932		98.77
KOG4555|consensus	175		98.77
KOG2471|consensus	696		98.76
PF12688	120	TPR_5: Tetratrico peptide repeat	98.76
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.75
KOG0545|consensus	329		98.74
KOG2796|consensus	366		98.72
KOG2796|consensus	366		98.69
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.67
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	98.64
KOG1586|consensus	288		98.63
KOG0376|consensus	476		98.62
PRK01773	173	hscB co-chaperone HscB; Provisional	98.61
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.6
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.57
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.56
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.54
KOG4507|consensus	886		98.53
KOG1586|consensus	288		98.5
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.46
KOG3617|consensus	1416		98.46
KOG2610|consensus	491		98.44
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.41
KOG1914|consensus	656		98.38
KOG1585|consensus	308		98.38
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.37
KOG1308|consensus	377		98.34
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	98.32
KOG1585|consensus	308		98.28
PF13428	44	TPR_14: Tetratricopeptide repeat	98.23
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.18
PF13428	44	TPR_14: Tetratricopeptide repeat	98.17
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	98.16
KOG1550|consensus	552		98.16
KOG1150|consensus	250		98.16
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.14
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.12
PF13431	34	TPR_17: Tetratricopeptide repeat	98.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.11
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	98.09
PF13431	34	TPR_17: Tetratricopeptide repeat	98.09
KOG2300|consensus	629		98.08
KOG1258|consensus	577		98.07
KOG0530|consensus	318		98.07
KOG2610|consensus	491		98.06
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.03
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	98.0
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.99
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.98
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.96
KOG3616|consensus	1636		97.95
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.94
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.92
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.92
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.91
KOG0530|consensus	318		97.88
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.87
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.86
KOG0985|consensus	1666		97.85
KOG4507|consensus	886		97.83
KOG0985|consensus	1666		97.81
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.75
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.74
KOG3783|consensus	546		97.68
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.63
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.62
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.53
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.52
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.52
KOG0890|consensus	2382		97.49
KOG1310|consensus	758		97.48
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.47
KOG1464|consensus	440		97.44
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.42
KOG3616|consensus	1636		97.4
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.37
KOG0890|consensus	2382		97.34
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.34
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	97.33
PRK10941	269	hypothetical protein; Provisional	97.31
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	97.3
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.29
KOG1550|consensus	552		97.23
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.21
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.18
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.15
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.14
KOG0568|consensus	342		97.12
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.12
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.07
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.07
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	97.0
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.99
PRK10941	269	hypothetical protein; Provisional	96.97
KOG1914|consensus	656		96.97
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.93
KOG0723|consensus	112		96.91
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.87
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.86
KOG1310|consensus	758		96.85
KOG3824|consensus	472		96.82
KOG3824|consensus	472		96.81
KOG2041|consensus	1189		96.81
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.78
KOG2041|consensus	1189		96.74
KOG1463|consensus	411		96.68
KOG2396|consensus	568		96.68
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.65
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.64
KOG2396|consensus	568		96.6
PRK11619	644	lytic murein transglycosylase; Provisional	96.59
KOG1538|consensus	1081		96.58
KOG1789|consensus	2235		96.58
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.53
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.53
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.51
KOG0529|consensus	421		96.44
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.4
KOG2581|consensus	493		96.39
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.34
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	96.32
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.28
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.25
KOG3192|consensus	168		96.17
KOG3364|consensus	149		96.17
KOG4814|consensus	872		96.13
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	96.1
KOG1538|consensus	1081		96.1
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.09
KOG3783|consensus	546		96.04
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.99
KOG4814|consensus	872		95.99
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	95.98
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.91
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.9
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.89
KOG3364|consensus	149		95.88
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.77
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.71
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.7
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.68
KOG1258|consensus	577		95.64
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.63
COG2912	269	Uncharacterized conserved protein [Function unknow	95.49
COG5159	421	RPN6 26S proteasome regulatory complex component [	95.45
KOG2422|consensus	665		95.33
KOG2422|consensus	665		95.32
KOG0546|consensus	372		95.24
KOG4151|consensus	748		95.16
KOG0431|consensus	453		95.12
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.1
KOG0546|consensus	372		95.03
KOG1464|consensus	440		94.96
KOG1839|consensus	1236		94.87
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.85
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.85
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.82
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.78
COG5191	435	Uncharacterized conserved protein, contains HAT (H	94.73
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.59
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	94.57
KOG1839|consensus	1236		94.56
COG5159	421	RPN6 26S proteasome regulatory complex component [	94.55
COG2912	269	Uncharacterized conserved protein [Function unknow	94.52
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.46
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.45
KOG0529|consensus	421		94.3
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.0
KOG4151|consensus	748		93.88
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.23
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.11
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	92.82
PRK11619	644	lytic murein transglycosylase; Provisional	92.78
KOG3807|consensus	556		92.66
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.51
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	92.44
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	92.24
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.08
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.07
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	91.96
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.93
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	91.83
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	91.75
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	91.73
KOG2063|consensus	877		91.53
COG4455	273	ImpE Protein of avirulence locus involved in tempe	91.4
COG3947	361	Response regulator containing CheY-like receiver a	91.37
KOG2581|consensus	493		91.33
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.28
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	91.15
COG4941	415	Predicted RNA polymerase sigma factor containing a	91.14
KOG2114|consensus	933		90.78
PHA02537	230	M terminase endonuclease subunit; Provisional	90.59
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	90.4
KOG3807|consensus	556		90.22
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	89.69
COG3947	361	Response regulator containing CheY-like receiver a	89.44
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	89.38
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	89.33
COG5536	328	BET4 Protein prenyltransferase, alpha subunit [Pos	89.02
smart00299	140	CLH Clathrin heavy chain repeat homology.	88.95
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.85
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	88.23
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	87.32
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.05
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	86.84
KOG0276|consensus	794		86.81
KOG0686|consensus	466		86.5
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.1
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.06
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	85.81
PHA02537	230	M terminase endonuclease subunit; Provisional	85.56
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.51
KOG1463|consensus	411		85.32
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	85.22
KOG0889|consensus	3550		85.13
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	84.75
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	84.71
KOG1920|consensus	1265		83.84
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	83.76
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.69
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.76
KOG0686|consensus	466		82.28
KOG2063|consensus	877		81.93
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	80.52
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	80.3
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	80.22
PF10938	155	YfdX: YfdX protein; InterPro: IPR021236 YfdX is a	80.03

>KOG0624|consensus

Probab=100.00  E-value=1.5e-68  Score=451.12  Aligned_cols=428  Identities=26%  Similarity=0.353  Sum_probs=408.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      +++.++++|..++..|++..|+..|..|++.+|++..+++.+|.+|+.+|+...|+..+.+++++.|++..+....|.++
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNP---AIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA  159 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  159 (470)
                      +++|.++.|...|..+++.+|.+.   ++...++.+............++..|+...|+..++.++++.|.+...+..++
T Consensus       117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Ra  196 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARA  196 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHH
Confidence            999999999999999999999654   55566666666666777888889999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++..++..++.++.+....+-+
T Consensus       197 kc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~  276 (504)
T KOG0624|consen  197 KCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA  276 (504)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      ......++|.++++..++.++.+|..+.+....+..++.|+..-+++.+|+..|.+++.++|+++.++..+|.+|+....
T Consensus       277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~  356 (504)
T KOG0624|consen  277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM  356 (504)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999997776667778889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhH
Q psy16214        320 YKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKL  398 (470)
Q Consensus       320 ~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~  398 (470)
                      |+.|+..|++|.+.+++ ..+++.+.++++..+++.+++||++|||.++++..||.|||||+|.+||||...+  +++++
T Consensus       357 YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqd--EeEKK  434 (504)
T KOG0624|consen  357 YDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQD--EEEKK  434 (504)
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccC--HHHHH
Confidence            99999999999999998 7889999999999999999999999999999999999999999999999999987  67788


Q ss_pred             HHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCC
Q psy16214        399 EQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMED  432 (470)
Q Consensus       399 ~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~  432 (470)
                      .++++|-+|+.|-|||+||+||+.+|+|.||.++
T Consensus       435 kAEKKFIDIAAAKEVLsd~EkRrqFDnGeDPLD~  468 (504)
T KOG0624|consen  435 KAEKKFIDIAAAKEVLSDPEKRRQFDNGEDPLDP  468 (504)
T ss_pred             HHHHhhhhHHHHHHhhcCHHHHhhccCCCCCCCh
Confidence            9999999999999999999999999999999765

>KOG0550|consensus

Probab=100.00  E-value=4.2e-61  Score=415.70  Aligned_cols=426  Identities=47%  Similarity=0.724  Sum_probs=384.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.....|+.++...+|.+|+..|+.||+..|+++..|.+++.+++..++|++|+-..++.++++|...+.+.+.++|+
T Consensus        48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~  127 (486)
T KOG0550|consen   48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCH  127 (486)
T ss_pred             HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhh
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG---VASKTYKLMKA  159 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a  159 (470)
                      ..+++..+|.+.++.        ..++                       ....|+..+++.+..+   |....+....+
T Consensus       128 ~a~~~~i~A~~~~~~--------~~~~-----------------------~~anal~~~~~~~~s~s~~pac~~a~~lka  176 (486)
T KOG0550|consen  128 LALSDLIEAEEKLKS--------KQAY-----------------------KAANALPTLEKLAPSHSREPACFKAKLLKA  176 (486)
T ss_pred             hhhHHHHHHHHHhhh--------hhhh-----------------------HHhhhhhhhhcccccccCCchhhHHHHhhh
Confidence            999999999988871        1111                       0112333344444332   44557778899


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .|+...+++++|+..--.++++++.+.++++..|.+++..++.+.|+.+|++++.++|++..........+.+..+.+.|
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~g  256 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERG  256 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      +-.++.|++..|.++|..+|.++|++...++.+|.++|.+..++|+..+|+..|+.++.++|...+++..+|.|++.+++
T Consensus       257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHH
Q psy16214        320 YKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLE  399 (470)
Q Consensus       320 ~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~  399 (470)
                      |++|+++|+++++...+.++.+.|++++..+++++++++|++||+.+.+++++|+++||++++.||||++..+    +++
T Consensus       337 ~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags----q~e  412 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS----QKE  412 (486)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch----hHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999884    678


Q ss_pred             HHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCC-CCCCCCccchhHHHHHHHh-------cCCCCCCCCC--cceeee
Q psy16214        400 QEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDS-GMGGHAGANLFEQHMFQTY-------FDPGCRARGS--NVRFQY  468 (470)
Q Consensus       400 ~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~  468 (470)
                      +|.+|+++++||.+|+||.+|.+||.|.|....+ |++|+||     +++|+.|       |+||++++++  ||.|+|
T Consensus       413 aE~kFkevgeAy~il~d~~kr~r~dsg~dle~~~~~~a~~dp-----~~~~~a~qa~~~f~f~gg~~~n~~g~g~~f~f  486 (486)
T KOG0550|consen  413 AEAKFKEVGEAYTILSDPMKRVRFDSGQDLEEVGSGGAGFDP-----FNIFRAFQALVQFGFPGGFSENSSGFGFIFQF  486 (486)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHhhcccccchhhhcCCCcCcCh-----hhhhhhcccceEEeccCCCCCCCCCcccccCC
Confidence            9999999999999999999999999999986543 4578999     5666555       4445554322  455555

>KOG4626|consensus

Probab=100.00  E-value=3.6e-41  Score=305.69  Aligned_cols=327  Identities=21%  Similarity=0.178  Sum_probs=290.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------------
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-------------   70 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------   70 (470)
                      ++.+-++|+.+...|++++|+.+|+.++++.|+..++|.++|.++...|+.+.|..+|..+++++|+             
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlk  195 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLK  195 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHH
Confidence            5678888888888889999999999888888888888888888888888877777777777777665             


Q ss_pred             ---------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         71 ---------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF  129 (470)
Q Consensus        71 ---------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  129 (470)
                                           .+.+|.+||.++...|+...|+..|+++++++|+..+++..||.++.....++.|...+
T Consensus       196 a~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y  275 (966)
T KOG4626|consen  196 AEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCY  275 (966)
T ss_pred             hhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHH
Confidence                                 44466777777777888888888888888889999999999999988888887777654


Q ss_pred             ----------------------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH
Q psy16214        130 ----------------------EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD  187 (470)
Q Consensus       130 ----------------------~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  187 (470)
                                            ++|..+-|+..|+++++..|+.+.++.++|.++-..|+..+|..+|.+++.+.|+.++
T Consensus       276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~had  355 (966)
T KOG4626|consen  276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHAD  355 (966)
T ss_pred             HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHH
Confidence                                  3589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214        188 AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN  267 (470)
Q Consensus       188 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  267 (470)
                      +.+++|.++...|.+++|...|.++++..|+...+..++            |.+|-++|++++|+.+|++++++.|.   
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNL------------a~i~kqqgnl~~Ai~~YkealrI~P~---  420 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNL------------ASIYKQQGNLDDAIMCYKEALRIKPT---  420 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhH------------HHHHHhcccHHHHHHHHHHHHhcCch---
Confidence            999999999999999999999999999999999888888            99999999999999999999999999   


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q psy16214        268 INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEA  346 (470)
Q Consensus       268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~  346 (470)
                       .+.++.++|.+|..+|+...|+.+|.+||.++|..++++.++|.+|...|+..+|+..|+.++++.|+ +++...+..+
T Consensus       421 -fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  421 -FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC  499 (966)
T ss_pred             -HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence             78899999999999999999999999999999999999999999999999999999999999999998 6665444433

>KOG4626|consensus

Probab=100.00  E-value=4.8e-39  Score=291.89  Aligned_cols=315  Identities=19%  Similarity=0.189  Sum_probs=251.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcC----------------------------------CchhHHHHHHHHHHHHc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVC----------------------------------PNVAAYYGNRAACYMML   51 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------------------p~~~~~~~~~a~~~~~~   51 (470)
                      ...+++...++.|+|.+|.++.......+                                  |.-.++|.++|.++...
T Consensus        50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   50 DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER  129 (966)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence            35667777777777777777766655444                                  44478999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy16214         52 GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-  130 (470)
Q Consensus        52 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-  130 (470)
                      |++++|+..|+.+++++|++.++|.++|.++...|+.+.|..+|..+++++|+...+...++.+....|++.+|...+. 
T Consensus       130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk  209 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK  209 (966)
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999988888877766543 


Q ss_pred             ---------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH
Q psy16214        131 ---------------------ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV  189 (470)
Q Consensus       131 ---------------------~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  189 (470)
                                           +|+...|+..|++++.++|....+++++|.+|...+.++.|+.+|.+++.+.|+++.++
T Consensus       210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~  289 (966)
T KOG4626|consen  210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAH  289 (966)
T ss_pred             HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhc
Confidence                                 48999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch
Q psy16214        190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ  269 (470)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  269 (470)
                      .++|.+|+.+|..+-||..|+++++++|..+.++.++            |+++-..|+..+|+.+|.+++.++|+    .
T Consensus       290 gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl------------anALkd~G~V~ea~~cYnkaL~l~p~----h  353 (966)
T KOG4626|consen  290 GNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL------------ANALKDKGSVTEAVDCYNKALRLCPN----H  353 (966)
T ss_pred             cceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH------------HHHHHhccchHHHHHHHHHHHHhCCc----c
Confidence            9999999999999999999999999999999988887            55555555555555555555555555    3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +.+.+++|.++.++|.+++|...|.++++..|....++.++|.+|...|++++|+.+|+.++.+.|.
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~  420 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT  420 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence            3445555555555555555555555555555555555555555555555555555555555555554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.6e-34  Score=288.78  Aligned_cols=316  Identities=21%  Similarity=0.239  Sum_probs=278.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..+..+|+.++..|+|++|+..|+++|...|+ +..+.++|.||..+|++++|+..++++++++|++..+++++|.+|.
T Consensus       127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            557889999999999999999999999999996 7789999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHH------------------------------HHHHHHHHH--------------
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQ------------------------------ESKALETMA--------------  119 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~------------------------------~l~~~~~~~--------------  119 (470)
                      .+|++++|+..|..++.+++.+.....                              .++..+...              
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            999999999998877766554332111                              111111000              


Q ss_pred             -------HHHHHHHHH---HhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh
Q psy16214        120 -------KNFEGASKA---FEANDYRTAMFYLDRAMDQ---GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP  186 (470)
Q Consensus       120 -------~~~~~a~~~---~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  186 (470)
                             .....+...   ...+.|++|+..+++++..   .|....++..+|.++...|++++|+..+++++..+|.++
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~  365 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT  365 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence                   000001000   1236899999999999986   477788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc
Q psy16214        187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI  266 (470)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  266 (470)
                      .+++.+|.++...|++++|+..|+++++.+|+++.++..+            |.+++..|++++|+..|++++.++|++ 
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~kal~l~P~~-  432 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHR------------AQLHFIKGEFAQAGKDYQKSIDLDPDF-  432 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCccC-
Confidence            9999999999999999999999999999999999998888            999999999999999999999999994 


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        267 NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                         ..++.++|.++..+|++++|+..+++++...|+++.++..+|.++..+|++++|+..|++++++.|.
T Consensus       433 ---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~  499 (615)
T TIGR00990       433 ---IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE  499 (615)
T ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence               5669999999999999999999999999999999999999999999999999999999999999986

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=1.9e-32  Score=273.89  Aligned_cols=310  Identities=17%  Similarity=0.161  Sum_probs=266.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------------
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL---------------   67 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---------------   67 (470)
                      ++..+.++|.++...|+|++|+..++++++.+|++..+++.+|.+|..+|++++|+..+..++..               
T Consensus       159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~  238 (615)
T TIGR00990       159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL  238 (615)
T ss_pred             chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999987655433211               


Q ss_pred             --------------------------------------------------------------------------------
Q psy16214         68 --------------------------------------------------------------------------------   67 (470)
Q Consensus        68 --------------------------------------------------------------------------------   67 (470)
                                                                                                      
T Consensus       239 l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~  318 (615)
T TIGR00990       239 LKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFE  318 (615)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16214         68 --------DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMF  139 (470)
Q Consensus        68 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  139 (470)
                              .|....++..+|.++..+|++++|+..|+++++++|++...+..++.+            +...|++++|+.
T Consensus       319 ~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~------------~~~~g~~~eA~~  386 (615)
T TIGR00990       319 KALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM------------NLELGDPDKAEE  386 (615)
T ss_pred             HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH------------HHHCCCHHHHHH
Confidence                    233445566677777777777777777777777777777666555444            566799999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214        140 YLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH  219 (470)
Q Consensus       140 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  219 (470)
                      .+++++..+|+++.++..+|.++...|++++|+..|++++.++|++..++..+|.++..+|++++|+..+++++...|++
T Consensus       387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~  466 (615)
T TIGR00990       387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA  466 (615)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchH--HHHHHHHHH-HHHcCCHHHHHHHHHHH
Q psy16214        220 AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININS--KLLHNRATV-LFKMGKYNEAIADCTLA  296 (470)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~--~~~~~la~~-~~~~g~~~~A~~~~~~a  296 (470)
                      +.++..+            |.++...|++++|+..|++++.+.|.+.....  ..+...+.+ +...|++++|+..++++
T Consensus       467 ~~~~~~l------------g~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA  534 (615)
T TIGR00990       467 PDVYNYY------------GELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA  534 (615)
T ss_pred             hHHHHHH------------HHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9988888            99999999999999999999999987543211  223333333 44479999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        297 LEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       297 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +.++|++..++..+|.++..+|++++|+.+|++++++.++
T Consensus       535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999886

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=4.5e-32  Score=270.28  Aligned_cols=331  Identities=13%  Similarity=0.065  Sum_probs=246.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      +.++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..++.++..
T Consensus        77 ~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~  156 (656)
T PRK15174         77 DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVL  156 (656)
T ss_pred             hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV-ASKTYKLMKAECLA  163 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~  163 (470)
                      .|++++|+..+.+++...|+++.++..+             ..++..|++++|+..+++++...| ........++.++.
T Consensus       157 ~g~~~eA~~~~~~~~~~~P~~~~a~~~~-------------~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~  223 (656)
T PRK15174        157 MDKELQAISLARTQAQEVPPRGDMIATC-------------LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC  223 (656)
T ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHH-------------HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence            5555555555555555555444432111             124567999999999999999876 33445566788999


Q ss_pred             HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHH----HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDL----AVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      ..|++++|+..+.+++..+|+++.++..+|.++...|++++    |+..|++++..+|++..++..+            |
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~l------------g  291 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLY------------A  291 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHH------------H
Confidence            99999999999999999999999999999999999999986    8999999999999999999888            9


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      .++...|++++|+..+++++...|++    ..++.++|.++...|++++|+..|++++..+|+++..+..+|.++...|+
T Consensus       292 ~~l~~~g~~~eA~~~l~~al~l~P~~----~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~  367 (656)
T PRK15174        292 DALIRTGQNEKAIPLLQQSLATHPDL----PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK  367 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence            99999999999999999999999994    56689999999999999999999999999999998888888999999999


Q ss_pred             HHHHHHHHHHHHhcCCC------hhHHHHHHHHHHHhhccccc-chhhhccC
Q psy16214        320 YKECVIDAEKIYKMDNS------RENHNFLEEAKRLLKRSEVK-DYYKILGV  364 (470)
Q Consensus       320 ~~~A~~~~~~a~~~~p~------~~~~~~l~~~~~~~~~~~~~-~~y~~lg~  364 (470)
                      +++|+..|+++++++|+      .+....+..+.......... ++..-|..
T Consensus       368 ~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~  419 (656)
T PRK15174        368 TSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAG  419 (656)
T ss_pred             HHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence            99999999999999987      23344444444444444333 45544444

>KOG0548|consensus

Probab=100.00  E-value=4.5e-32  Score=244.02  Aligned_cols=342  Identities=26%  Similarity=0.366  Sum_probs=289.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..+..+|+..+..|+|+.|+.+|+.+|.++|.+...|.++..+|..+|+|++|++...+.++++|.++.+|.++|..+.
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~   81 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF   81 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH------------------------------------------
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN------------------------------------------  121 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~------------------------------------------  121 (470)
                      .+|+|++|+..|.+.++.+|+|......+...+.....                                          
T Consensus        82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~  161 (539)
T KOG0548|consen   82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS  161 (539)
T ss_pred             hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence            99999999999999999999999988888877622100                                          


Q ss_pred             ---------H---------------------------------------------------------HHHHHHHhcCCHH
Q psy16214        122 ---------F---------------------------------------------------------EGASKAFEANDYR  135 (470)
Q Consensus       122 ---------~---------------------------------------------------------~~a~~~~~~~~~~  135 (470)
                               .                                                         ..+...+...++.
T Consensus       162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~  241 (539)
T KOG0548|consen  162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE  241 (539)
T ss_pred             hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence                     0                                                         0001112226888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-------HHHHHHHHHHhccCChHHHHHH
Q psy16214        136 TAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP-------DAVFVRGLCLYYDDKMDLAVNH  208 (470)
Q Consensus       136 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~  208 (470)
                      .|++.+..++.++ .+...+.+.+-+|+..|.+.+++..+.++++......       .+...+|..+...++++.|+.+
T Consensus       242 ~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~  320 (539)
T KOG0548|consen  242 TAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY  320 (539)
T ss_pred             HHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence            9999999999999 8888899999999999999999999988877654432       2344466677788999999999


Q ss_pred             HHHHHhhCCC--hHHHHHHHHHH------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHH
Q psy16214        209 FQLLLKLAPD--HAKAKETYKRA------------KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH  274 (470)
Q Consensus       209 ~~~~l~~~p~--~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  274 (470)
                      |++++.....  ...........            .........|+.++..|+|..|+..|+++|..+|+    .+.+|.
T Consensus       321 ~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~----Da~lYs  396 (539)
T KOG0548|consen  321 YQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE----DARLYS  396 (539)
T ss_pred             HHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc----hhHHHH
Confidence            9999875543  22222211111            12334455699999999999999999999999999    567799


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214        275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL  350 (470)
Q Consensus       275 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~  350 (470)
                      |+|.||.+++.+..|+..++++++++|+...+|.+.|.++..+.+|++|.+.|+++++.+|+ .++...+.++....
T Consensus       397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999998 77777777776554

>KOG0547|consensus

Probab=100.00  E-value=5.7e-32  Score=239.81  Aligned_cols=318  Identities=24%  Similarity=0.330  Sum_probs=221.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..+..+|+.+|..|+|++||++|+.||+++|+.+..|.+++.||..+|+|++.++.+.++++++|++..++++++.++
T Consensus       114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAH  193 (606)
T ss_pred             HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHH
Confidence            46689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhc--------------------------------CCCChHHH---------------------
Q psy16214         83 IALGDAPTARSNLKALQEL--------------------------------DPDNPAIA---------------------  109 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~--------------------------------~p~~~~~~---------------------  109 (470)
                      ..+|++++|+....-..-+                                .|.-|.+.                     
T Consensus       194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~  273 (606)
T KOG0547|consen  194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKS  273 (606)
T ss_pred             HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCC
Confidence            9999999988654321110                                01111000                     


Q ss_pred             --------HHHHHHHHH-HHHHHHHHH-----------------------------------HHhcCCHHHHHHHHHHHH
Q psy16214        110 --------QESKALETM-AKNFEGASK-----------------------------------AFEANDYRTAMFYLDRAM  145 (470)
Q Consensus       110 --------~~l~~~~~~-~~~~~~a~~-----------------------------------~~~~~~~~~A~~~~~~~l  145 (470)
                              ..+..++.. ...|..+..                                   ++-.|++-.|...++.+|
T Consensus       274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I  353 (606)
T KOG0547|consen  274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI  353 (606)
T ss_pred             ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence                    000000000 000000000                                   122366666777777777


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214        146 DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET  225 (470)
Q Consensus       146 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  225 (470)
                      .++|.....++.++.+|...++.++-...|.++.+++|.++++|+.+|.+++.++++++|+..|++++.++|++...+..
T Consensus       354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ  433 (606)
T KOG0547|consen  354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ  433 (606)
T ss_pred             hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence            77777776677777777777777777777777777777777777777777777777777777777777777777666655


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q psy16214        226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN---  302 (470)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---  302 (470)
                      +            +...+++++++++...|+.+++..|+    .+.++...|.++..++++++|++.|.+++.+.|.   
T Consensus       434 l------------~~a~Yr~~k~~~~m~~Fee~kkkFP~----~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~  497 (606)
T KOG0547|consen  434 L------------CCALYRQHKIAESMKTFEEAKKKFPN----CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL  497 (606)
T ss_pred             H------------HHHHHHHHHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence            5            66666666777777777777777666    3444666677777777777777777777777666   


Q ss_pred             ---CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCC
Q psy16214        303 ---YLKALSRRCKCFH-ALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       303 ---~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~  336 (470)
                         ++..+...|.+.. -.+++..|+..+++|++++|.
T Consensus       498 ~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk  535 (606)
T KOG0547|consen  498 IIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK  535 (606)
T ss_pred             ccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch
Confidence               4444444443332 236666777777777777765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=7.1e-30  Score=271.34  Aligned_cols=318  Identities=18%  Similarity=0.141  Sum_probs=246.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH--------------H
Q psy16214          9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK--------------G   74 (470)
Q Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~   74 (470)
                      .+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..              .
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            45778888888888888888888888888888888888888888888888888888888886542              1


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214         75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY  154 (470)
Q Consensus        75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  154 (470)
                      ...+|.++...|++++|+..|++++.++|++..++..++.+            +...|++++|+..|+++++.+|.+..+
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~------------~~~~g~~~eA~~~y~~aL~~~p~~~~a  421 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDV------------AMARKDYAAAERYYQQALRMDPGNTNA  421 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            23457777888888888888888888888887777666665            555667777777777777777766554


Q ss_pred             HHHH------------------------------------------HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHH
Q psy16214        155 KLMK------------------------------------------AECLAHLNRLQEAQEIANSILATDKQNPDAVFVR  192 (470)
Q Consensus       155 ~~~~------------------------------------------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  192 (470)
                      +..+                                          |.++...|++++|+..|+++++.+|+++.+++.+
T Consensus       422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~L  501 (1157)
T PRK11447        422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRL  501 (1157)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            4333                                          3344556888888888888888888888888888


Q ss_pred             HHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHH--------------------------------HHHHHHHHHH
Q psy16214        193 GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK--------------------------------LLKAKKEEGN  240 (470)
Q Consensus       193 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~--------------------------------~~~~~~~~~~  240 (470)
                      |.++...|++++|+..+++++...|+++..+..+....                                ........+.
T Consensus       502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~  581 (1157)
T PRK11447        502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN  581 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence            88888888888888888888888887776554331110                                0112234577


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q psy16214        241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY  320 (470)
Q Consensus       241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  320 (470)
                      .+...|++++|+.+++    ..|.+    ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++
T Consensus       582 ~l~~~G~~~eA~~~l~----~~p~~----~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~  653 (1157)
T PRK11447        582 RLRDSGKEAEAEALLR----QQPPS----TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL  653 (1157)
T ss_pred             HHHHCCCHHHHHHHHH----hCCCC----chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            8888999999988876    46764    456889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCC-hhHHHHHHHH
Q psy16214        321 KECVIDAEKIYKMDNS-RENHNFLEEA  346 (470)
Q Consensus       321 ~~A~~~~~~a~~~~p~-~~~~~~l~~~  346 (470)
                      ++|+..++++++..|+ ......+..+
T Consensus       654 ~eA~~~l~~ll~~~p~~~~~~~~la~~  680 (1157)
T PRK11447        654 AAARAQLAKLPATANDSLNTQRRVALA  680 (1157)
T ss_pred             HHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            9999999999999886 3444444433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=4e-30  Score=273.21  Aligned_cols=318  Identities=15%  Similarity=0.119  Sum_probs=281.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhH--------------HHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAA--------------YYGNRAACYMMLGMYTYALDDAKLAVSLD   68 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~   68 (470)
                      +++.+..+|.+++..|++++|+.+|+++++.+|++..              ....+|.++...|++++|+..|+++++++
T Consensus       302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~  381 (1157)
T PRK11447        302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD  381 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            5678999999999999999999999999999997642              22456888999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH----------------------------
Q psy16214         69 PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK----------------------------  120 (470)
Q Consensus        69 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~----------------------------  120 (470)
                      |+++.++..+|.++...|++++|+..|+++++++|++..++..++.++....                            
T Consensus       382 P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~  461 (1157)
T PRK11447        382 NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQN  461 (1157)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999998888877763210                            


Q ss_pred             --HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q psy16214        121 --NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY  198 (470)
Q Consensus       121 --~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  198 (470)
                        ....+..+...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++++...|.++..++.++..+..
T Consensus       462 ~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~  541 (1157)
T PRK11447        462 DRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG  541 (1157)
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence              112344456789999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             cCChHHHHHHHHHHHh----------------------------------------hCCChHHHHHHHHHHHHHHHHHHH
Q psy16214        199 DDKMDLAVNHFQLLLK----------------------------------------LAPDHAKAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       199 ~g~~~~A~~~~~~~l~----------------------------------------~~p~~~~~~~~~~~~~~~~~~~~~  238 (470)
                      .+++++|+..++++..                                        ..|.++...            ...
T Consensus       542 ~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~------------~~L  609 (1157)
T PRK11447        542 SDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID------------LTL  609 (1157)
T ss_pred             CCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH------------HHH
Confidence            9999999888776432                                        123333333            334


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |.++...|++++|+..|+++++.+|++    ..++..++.++...|++++|+..++++++..|+++.++..+|.++..+|
T Consensus       610 a~~~~~~g~~~~A~~~y~~al~~~P~~----~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g  685 (1157)
T PRK11447        610 ADWAQQRGDYAAARAAYQRVLTREPGN----ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG  685 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence            999999999999999999999999994    5679999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q psy16214        319 QYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~~p~  336 (470)
                      ++++|+..|++++...|+
T Consensus       686 ~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        686 DTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             CHHHHHHHHHHHhhhCcc
Confidence            999999999999998765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.6e-29  Score=265.54  Aligned_cols=336  Identities=18%  Similarity=0.137  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      ....++..+...|++++|+..+++.+...|.++.++..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus       433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  512 (899)
T TIGR02917       433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE  512 (899)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence            33444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH----------------------HHHhcCCHHHHHHHHHH
Q psy16214         86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS----------------------KAFEANDYRTAMFYLDR  143 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~----------------------~~~~~~~~~~A~~~~~~  143 (470)
                      |++++|+..+++++...|.+..++..++.++...++...|.                      .+...|++++|+..+++
T Consensus       513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  592 (899)
T TIGR02917       513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE  592 (899)
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            55555555555555555555555555555544333333332                      23445777777777777


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       144 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      ++...|.++.++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++...+
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  672 (899)
T TIGR02917       593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ  672 (899)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777766555


Q ss_pred             HHHHHHH----------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHH
Q psy16214        224 ETYKRAK----------------------LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF  281 (470)
Q Consensus       224 ~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~  281 (470)
                      ..+..+.                      ........|.++...|++++|+..|++++...|++     ..+..++.++.
T Consensus       673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~  747 (899)
T TIGR02917       673 IGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-----QNAIKLHRALL  747 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-----hHHHHHHHHHH
Confidence            4432221                      01122234888999999999999999999998874     45778899999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q psy16214        282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEA  346 (470)
Q Consensus       282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~  346 (470)
                      ..|++++|+..+++++..+|+++.++..+|.++..+|++++|+..|+++++..|+ ..+...+..+
T Consensus       748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~  813 (899)
T TIGR02917       748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWL  813 (899)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999997 4444444433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=1.6e-29  Score=251.99  Aligned_cols=274  Identities=15%  Similarity=0.100  Sum_probs=250.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      +++.+..+|..+...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..++ .+
T Consensus       109 ~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l  187 (656)
T PRK15174        109 QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SF  187 (656)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999998887765 48


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      ...|++++|+..+++++...|.......           ...+..+...|++++|+..+.+++...|+++.++..+|.++
T Consensus       188 ~~~g~~~eA~~~~~~~l~~~~~~~~~~~-----------~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l  256 (656)
T PRK15174        188 LNKSRLPEDHDLARALLPFFALERQESA-----------GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAY  256 (656)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcchhHH-----------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            8999999999999999998764433211           11233467889999999999999999999999999999999


Q ss_pred             HHcCCHHH----HHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQE----AQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       163 ~~~~~~~~----A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  238 (470)
                      ...|++++    |+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+            
T Consensus       257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~L------------  324 (656)
T PRK15174        257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMY------------  324 (656)
T ss_pred             HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------
Confidence            99999986    89999999999999999999999999999999999999999999999999998888            


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL  304 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (470)
                      |.++...|++++|+..|++++...|.+    ...+..+|.++...|++++|+..|+++++.+|++.
T Consensus       325 a~~l~~~G~~~eA~~~l~~al~~~P~~----~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        325 ARALRQVGQYTAASDEFVQLAREKGVT----SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            999999999999999999999999984    34566779999999999999999999999999874

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.7e-29  Score=264.29  Aligned_cols=315  Identities=17%  Similarity=0.174  Sum_probs=213.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..++.+|..+...|++++|+..|++++..+|.+..++..++.++...|++++|+..+++++..+|.+...+..++.++.
T Consensus       499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  578 (899)
T TIGR02917       499 FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYL  578 (899)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH----------------------HhcCCHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA----------------------FEANDYRTAMFYL  141 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~----------------------~~~~~~~~A~~~~  141 (470)
                      ..|++++|+..+++++...|.++..+..++.++...+.++.|...                      ...|++++|+..+
T Consensus       579 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  658 (899)
T TIGR02917       579 GKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSL  658 (899)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            777777777777777776777776666666666655555554443                      2347788888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH
Q psy16214        142 DRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK  221 (470)
Q Consensus       142 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  221 (470)
                      ++++...|++...+..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ .
T Consensus       659 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~  737 (899)
T TIGR02917       659 KRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-Q  737 (899)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-h
Confidence            888888888777777777777777888888877777777777777777777777777777777777777777777766 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214        222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP  301 (470)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (470)
                      ....+            +.++...|++++|+..+++++...|++    ..++..+|.++..+|++++|+..|+++++.+|
T Consensus       738 ~~~~l------------~~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  801 (899)
T TIGR02917       738 NAIKL------------HRALLASGNTAEAVKTLEAWLKTHPND----AVLRTALAELYLAQKDYDKAIKHYRTVVKKAP  801 (899)
T ss_pred             HHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence            23333            555555556666666555555555552    34455555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       302 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +++.++..++.++...|+ .+|+..+++++++.|+
T Consensus       802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~  835 (899)
T TIGR02917       802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN  835 (899)
T ss_pred             CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC
Confidence            555555555555555555 5555555555555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.97  E-value=7.1e-28  Score=245.26  Aligned_cols=340  Identities=15%  Similarity=0.041  Sum_probs=251.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..+..+|..+...|++++|+..|++++..+|.++.++..++.++...|++++|+..++++++.+|+++. +..+|.++
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l  126 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVY  126 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence            45568999999999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-------------------------------c
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-------------------------------A  131 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-------------------------------~  131 (470)
                      ...|++++|+..+++++++.|+++.++..++.++...+..+.|+..+.                               .
T Consensus       127 ~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~  206 (765)
T PRK10049        127 KRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK  206 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence            999999999999999999999999988887777643333332222211                               0


Q ss_pred             CCH---HHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-HHHHHHHHHHhccC
Q psy16214        132 NDY---RTAMFYLDRAMDQGVASKTY-------KLMKAECLAHLNRLQEAQEIANSILATDKQNP-DAVFVRGLCLYYDD  200 (470)
Q Consensus       132 ~~~---~~A~~~~~~~l~~~p~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g  200 (470)
                      +++   ++|+..++.++...|.++..       .......+...|++++|+..|+++++..|..+ .+...+|.++...|
T Consensus       207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g  286 (765)
T PRK10049        207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH  286 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence            112   44555555555442222211       11111223444555666666666555543222 12233455555556


Q ss_pred             ChHHHHHHHHHHHhhCCChH----HHHHH-----------------HHHHHH--------------------HHHHHHHH
Q psy16214        201 KMDLAVNHFQLLLKLAPDHA----KAKET-----------------YKRAKL--------------------LKAKKEEG  239 (470)
Q Consensus       201 ~~~~A~~~~~~~l~~~p~~~----~~~~~-----------------~~~~~~--------------------~~~~~~~~  239 (470)
                      ++++|+..|++++..+|.+.    .....                 +..+..                    .......+
T Consensus       287 ~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a  366 (765)
T PRK10049        287 QPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLS  366 (765)
T ss_pred             CcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHH
Confidence            66666666555555544331    00000                 000000                    01122348


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      .++...|++++|+..+++++...|.+    ..++..+|.++...|++++|+..+++++.++|++..+++.+|.++..+|+
T Consensus       367 ~~l~~~g~~~eA~~~l~~al~~~P~n----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~  442 (765)
T PRK10049        367 QVAKYSNDLPQAEMRARELAYNAPGN----QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE  442 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence            88999999999999999999999995    56799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChhHHHHHHHHH
Q psy16214        320 YKECVIDAEKIYKMDNSRENHNFLEEAK  347 (470)
Q Consensus       320 ~~~A~~~~~~a~~~~p~~~~~~~l~~~~  347 (470)
                      +++|...++++++..|+......+.+..
T Consensus       443 ~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        443 WRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999866666665544

>KOG1126|consensus

Probab=99.97  E-value=5.6e-29  Score=229.68  Aligned_cols=300  Identities=18%  Similarity=0.200  Sum_probs=276.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214          9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA   88 (470)
Q Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   88 (470)
                      .+|......-+..+|+..|.+.-...++...++..+|.+|+.+++|++|..+|+.+-++.|-..+..-....+++.+.+-
T Consensus       324 ~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~  403 (638)
T KOG1126|consen  324 GEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE  403 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh
Confidence            33444455567789999999977778888899999999999999999999999999999999888888888888888876


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL  168 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~  168 (470)
                      -+---.-+.++..+|+.|+.|..+|.++..+            ++++.|++.+++++.++|....++..+|.-+.....+
T Consensus       404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ------------kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~  471 (638)
T KOG1126|consen  404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQ------------KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF  471 (638)
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHhcchhhhh------------hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH
Confidence            6666677788899999999999999996554            5677788889999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      +.|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-+|++|++++|.+......+            |.++.+.|+.
T Consensus       472 d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~------------g~~~~~~k~~  539 (638)
T KOG1126|consen  472 DKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHI------------GRIQHQLKRK  539 (638)
T ss_pred             HhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhh------------hHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999988888            9999999999


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE  328 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  328 (470)
                      ++|+..|++|+.++|.++    ...+.+|.++..++++++|+..+++..++-|++..+++.+|.+|.++|+.+.|+..|.
T Consensus       540 d~AL~~~~~A~~ld~kn~----l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~  615 (638)
T KOG1126|consen  540 DKALQLYEKAIHLDPKNP----LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFS  615 (638)
T ss_pred             hHHHHHHHHHHhcCCCCc----hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhH
Confidence            999999999999999965    4589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCC
Q psy16214        329 KIYKMDNS  336 (470)
Q Consensus       329 ~a~~~~p~  336 (470)
                      -|..++|.
T Consensus       616 ~A~~ldpk  623 (638)
T KOG1126|consen  616 WALDLDPK  623 (638)
T ss_pred             HHhcCCCc
Confidence            99999997

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.97  E-value=6.6e-27  Score=222.72  Aligned_cols=300  Identities=15%  Similarity=0.053  Sum_probs=258.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQI   79 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la   79 (470)
                      ....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..    ..++..+|
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La  114 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG  114 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999998854332    35788999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HH
Q psy16214         80 KCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK-----TY  154 (470)
Q Consensus        80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~  154 (470)
                      .+|...|++++|+..|.++++..|.+..++..++.+            +...|++++|+..+.+++...|...     ..
T Consensus       115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  182 (389)
T PRK11788        115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEI------------YQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF  182 (389)
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHH------------HHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            999999999999999999999988888777666655            5667889999999999998887653     35


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHH
Q psy16214        155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLK  233 (470)
Q Consensus       155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~  233 (470)
                      +..+|.++...|++++|+..++++++..|++..+++.+|.++...|++++|+..+++++..+|.+. ..+..+       
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l-------  255 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL-------  255 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH-------
Confidence            667899999999999999999999999999999999999999999999999999999999888763 334444       


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                           +.++...|++++|+..+++++...|+.     ..+..++.++...|++++|+..++++++..|++......++..
T Consensus       256 -----~~~~~~~g~~~~A~~~l~~~~~~~p~~-----~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~  325 (389)
T PRK11788        256 -----MECYQALGDEAEGLEFLRRALEEYPGA-----DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYH  325 (389)
T ss_pred             -----HHHHHHcCCHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHh
Confidence                 889999999999999999999998873     2347899999999999999999999999999987655445444


Q ss_pred             HHH--hCCHHHHHHHHHHHHh
Q psy16214        314 FHA--LGQYKECVIDAEKIYK  332 (470)
Q Consensus       314 ~~~--~g~~~~A~~~~~~a~~  332 (470)
                      +..  .|+..+|+..+++.++
T Consensus       326 ~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        326 LAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             hhccCCccchhHHHHHHHHHH
Confidence            422  4588888888887775

>KOG2002|consensus

Probab=99.96  E-value=3.9e-26  Score=218.60  Aligned_cols=340  Identities=18%  Similarity=0.143  Sum_probs=271.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .++.+|.+|..+..+|+|++|..+|.+++..+|++ .-.++.+|..|+..|+++.|+.+|+++++..|++.++...+|.+
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            35678999999999999999999999999999988 77889999999999999999999999999999999999999999


Q ss_pred             HHHcC----ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH------HHHHHH--------------------HHHhc
Q psy16214         82 NIALG----DAPTARSNLKALQELDPDNPAIAQESKALETMAK------NFEGAS--------------------KAFEA  131 (470)
Q Consensus        82 ~~~~g----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~------~~~~a~--------------------~~~~~  131 (470)
                      |...+    ..+.|..++.++++..|.+.++|..++.++....      .+..|.                    ..+..
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~  465 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL  465 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence            98886    6688999999999999999999999998875432      233333                    23456


Q ss_pred             CCHHHHHHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC
Q psy16214        132 NDYRTAMFYLDRAMDQ-----GVAS-----KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK  201 (470)
Q Consensus       132 ~~~~~A~~~~~~~l~~-----~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  201 (470)
                      |++.+|...+..++..     +++.     ....+++|.++...++++.|.+.|..+++.+|...+++..+|......++
T Consensus       466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~  545 (1018)
T KOG2002|consen  466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNN  545 (1018)
T ss_pred             cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccC
Confidence            9999999999999877     2222     34588999999999999999999999999999999999999988888899


Q ss_pred             hHHHHHHHHHHHhhCCChHHHHHHHHHHHH------------------------HHHHHHHHHHHHh------------c
Q psy16214        202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKL------------------------LKAKKEEGNEKFV------------A  245 (470)
Q Consensus       202 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~------------~  245 (470)
                      ..+|...+..++..+..++.++..++.+..                        .-+....|+++++            .
T Consensus       546 ~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~k  625 (1018)
T KOG2002|consen  546 LYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEK  625 (1018)
T ss_pred             cHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHH
Confidence            999999999999999999999888763311                        1122334666654            2


Q ss_pred             CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16214        246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI  325 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  325 (470)
                      +.+++|+.+|.++|+.+|.|    ..+-..+|.|+...|++.+|+..|.++.+--.+++.+|.++|.||..+|+|..|++
T Consensus       626 k~~~KAlq~y~kvL~~dpkN----~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq  701 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLRNDPKN----MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ  701 (1018)
T ss_pred             HHHHHHHHHHHHHHhcCcch----hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence            56788999999999999984    45566677777777777777777777776666667777777777777777777777


Q ss_pred             HHHHHHhcCC---ChhHHHHHHHH
Q psy16214        326 DAEKIYKMDN---SRENHNFLEEA  346 (470)
Q Consensus       326 ~~~~a~~~~p---~~~~~~~l~~~  346 (470)
                      .|+.+++..-   +.++...|.++
T Consensus       702 mYe~~lkkf~~~~~~~vl~~Lara  725 (1018)
T KOG2002|consen  702 MYENCLKKFYKKNRSEVLHYLARA  725 (1018)
T ss_pred             HHHHHHHHhcccCCHHHHHHHHHH
Confidence            7777776543   24454444444

>KOG0624|consensus

Probab=99.96  E-value=1.9e-26  Score=196.31  Aligned_cols=360  Identities=16%  Similarity=0.241  Sum_probs=281.5

Q ss_pred             CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214         34 CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK  113 (470)
Q Consensus        34 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  113 (470)
                      +|.++.-++.+|..++..|++..|+..|..|++.+|++..++++.|.+|+.+|+..-|+..+.+++++.|+...+.    
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~AR----  109 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAAR----  109 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHH----
Confidence            5667888999999999999999999999999999999999999999999999999999999999999999987775    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH---HH------------HHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        114 ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT---YK------------LMKAECLAHLNRLQEAQEIANSI  178 (470)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~------------~~~a~~~~~~~~~~~A~~~~~~~  178 (470)
                              .+.+..++++|.+++|..-|+.++..+|++..   +.            ......+...|++..|+.....+
T Consensus       110 --------iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~l  181 (504)
T KOG0624|consen  110 --------IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHL  181 (504)
T ss_pred             --------HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence                    44455588999999999999999999995532   21            22334456679999999999999


Q ss_pred             hhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214        179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA  258 (470)
Q Consensus       179 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  258 (470)
                      ++..|=++..+..++.||...|++..||..++.+-++..++.....-+            +..++..|+.+.++...+++
T Consensus       182 lEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki------------s~L~Y~vgd~~~sL~~iREC  249 (504)
T KOG0624|consen  182 LEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI------------SQLLYTVGDAENSLKEIREC  249 (504)
T ss_pred             HhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH------------HHHHHhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988777            99999999999999999999


Q ss_pred             HhhcccCccchHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhCCHHHHHHH
Q psy16214        259 LKIDARNININSKL--------LHNRATVLFKMGKYNEAIADCTLALEKDPNYLK----ALSRRCKCFHALGQYKECVID  326 (470)
Q Consensus       259 l~~~p~~~~~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~  326 (470)
                      ++++|++....+..        ...-+......++|.++++..++.++.+|..+.    ....+..|+..-|++.+|+..
T Consensus       250 LKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq  329 (504)
T KOG0624|consen  250 LKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ  329 (504)
T ss_pred             HccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence            99999976432110        011134456778999999999999999998543    455578899999999999999


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHhhcc----cccchhhhccCCCCCCH--HHHHHHHHHHHHHcCCCCCCC---ccHHhh
Q psy16214        327 AEKIYKMDNSRENHNFLEEAKRLLKRS----EVKDYYKILGVTKNASS--DDIKKAYRKRALVHHPDRHTN---ATQAQK  397 (470)
Q Consensus       327 ~~~a~~~~p~~~~~~~l~~~~~~~~~~----~~~~~y~~lg~~~~~~~--~ei~~ay~~~~~~~~pd~~~~---~~~~~~  397 (470)
                      +..+++++|+ ++..+..+++..+...    ...+|-+.+.+..+-+.  +-+.+|-|-+-..-.-|-.+-   .+.+.+
T Consensus       330 C~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKILGVkRnAsK  408 (504)
T KOG0624|consen  330 CKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKILGVKRNASK  408 (504)
T ss_pred             HHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHhhhcccccH
Confidence            9999999994 5556666776665432    34566677666554322  111222111111111110000   123446


Q ss_pred             HHHHHHHHHHHHHH--hhcCChh
Q psy16214        398 LEQEKLFKEVGEAY--GILSDPT  418 (470)
Q Consensus       398 ~~~~~~~~~i~~ay--~~l~d~~  418 (470)
                      .++.+.|++++..+  +-..|++
T Consensus       409 qEI~KAYRKlAqkWHPDNFqdEe  431 (504)
T KOG0624|consen  409 QEITKAYRKLAQKWHPDNFQDEE  431 (504)
T ss_pred             HHHHHHHHHHHHhcCCccccCHH
Confidence            67788888888877  5677776

>KOG0547|consensus

Probab=99.96  E-value=3.4e-26  Score=203.36  Aligned_cols=309  Identities=18%  Similarity=0.170  Sum_probs=269.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHH------------------H
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLA------------------V   65 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a------------------l   65 (470)
                      +--|-+++-+|...|+|++.++..+++++++|+.+.+++.++.++..+|++.+|+.+..-.                  +
T Consensus       149 piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~L  228 (606)
T KOG0547|consen  149 PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVL  228 (606)
T ss_pred             chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHH
Confidence            5567889999999999999999999999999999999999999999999999998755322                  1


Q ss_pred             hc--------------CCC-------------------------------------------------------------
Q psy16214         66 SL--------------DPR-------------------------------------------------------------   70 (470)
Q Consensus        66 ~~--------------~p~-------------------------------------------------------------   70 (470)
                      ..              .|.                                                             
T Consensus       229 kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~  308 (606)
T KOG0547|consen  229 KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG  308 (606)
T ss_pred             HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh
Confidence            10              000                                                             


Q ss_pred             -------C---------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214         71 -------F---------SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDY  134 (470)
Q Consensus        71 -------~---------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  134 (470)
                             +         +.++...|..+.-.|++-.|...|+.+++++|.+...+..+            |..+....+.
T Consensus       309 ~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~------------a~~y~d~~~~  376 (606)
T KOG0547|consen  309 SESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKR------------AAAYADENQS  376 (606)
T ss_pred             hhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHH------------HHHHhhhhcc
Confidence                   2         44666677777788999999999999999999988875444            4447778888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214        135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       135 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                      ++-...|+++..++|.++.+++.+|.+++-++++++|+..|++++.++|++.-++..++.+.+++++++++...|+.+.+
T Consensus       377 ~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk  456 (606)
T KOG0547|consen  377 EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK  456 (606)
T ss_pred             HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHH-HHHcCCHHHHHH
Q psy16214        215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--NSKLLHNRATV-LFKMGKYNEAIA  291 (470)
Q Consensus       215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~la~~-~~~~g~~~~A~~  291 (470)
                      ..|+.++++..+            |.++..+++++.|++.|.+++.+.|....+  .+..+.+.|.+ ....+++..|+.
T Consensus       457 kFP~~~Evy~~f------------AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~  524 (606)
T KOG0547|consen  457 KFPNCPEVYNLF------------AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAEN  524 (606)
T ss_pred             hCCCCchHHHHH------------HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHH
Confidence            999999999999            999999999999999999999999982211  12223333333 235589999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        292 DCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       292 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++++|++++|..-.++..+|.+..++|+.++|++.|+++..+..+
T Consensus       525 Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt  569 (606)
T KOG0547|consen  525 LLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART  569 (606)
T ss_pred             HHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999988765

>KOG1155|consensus

Probab=99.96  E-value=4.5e-25  Score=195.10  Aligned_cols=302  Identities=15%  Similarity=0.061  Sum_probs=185.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHH-----------------------------HHHHHHcCC
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNR-----------------------------AACYMMLGM   53 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-----------------------------a~~~~~~g~   53 (470)
                      ++-.++..|.++.+.|..+.|+..+..++...|-+..+|..+                             +.++..+.+
T Consensus       163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q  242 (559)
T KOG1155|consen  163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ  242 (559)
T ss_pred             hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence            345688899999999999999999999999888765555444                             344445556


Q ss_pred             hHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214         54 YTYALDDAKLAVSL-DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN  132 (470)
Q Consensus        54 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  132 (470)
                      .++++..++..+.. -|.+...-...|.+.....++++|+..|+.+.+.+|-..+-...+..+......-          
T Consensus       243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~----------  312 (559)
T KOG1155|consen  243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK----------  312 (559)
T ss_pred             HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh----------
Confidence            78888888888887 7888888889999999999999999999999999997766665555554333221          


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214        133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL  212 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  212 (470)
                        .+-.-+...+..++.-.++....+|..|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|
T Consensus       313 --skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrA  390 (559)
T KOG1155|consen  313 --SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRA  390 (559)
T ss_pred             --HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence              111111223333344444444445555555555555555555555555555555555555555555555555555555


Q ss_pred             HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214        213 LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD  292 (470)
Q Consensus       213 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (470)
                      ++++|.+..+|..+            |.+|.-++...=|+-+|++|+...|.    .+.+|..+|.||.++++.++|+.+
T Consensus       391 vdi~p~DyRAWYGL------------GQaYeim~Mh~YaLyYfqkA~~~kPn----DsRlw~aLG~CY~kl~~~~eAiKC  454 (559)
T KOG1155|consen  391 VDINPRDYRAWYGL------------GQAYEIMKMHFYALYYFQKALELKPN----DSRLWVALGECYEKLNRLEEAIKC  454 (559)
T ss_pred             HhcCchhHHHHhhh------------hHHHHHhcchHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHhccHHHHHHH
Confidence            55555555555554            55555555555555555555555555    233455555555555555555555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      |.+++.....+..++..+|.+|.++++.++|..+|++.++
T Consensus       455 ykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  455 YKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            5555555544555555555555555555555555555554

>KOG2002|consensus

Probab=99.96  E-value=1.2e-24  Score=208.51  Aligned_cols=346  Identities=18%  Similarity=0.176  Sum_probs=299.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      ++-.++-+|...+..|+|..|+.+|..++.++|.. ++....+|.|++.+++.+.|+..|+++++++|.++.++..||.+
T Consensus       163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~  242 (1018)
T KOG2002|consen  163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEV  242 (1018)
T ss_pred             chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence            45578888999999999999999999999999985 67889999999999999999999999999999999999999988


Q ss_pred             HHHcCC---hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-------------------------HHHHHHHhcCC
Q psy16214         82 NIALGD---APTARSNLKALQELDPDNPAIAQESKALETMAKNF-------------------------EGASKAFEAND  133 (470)
Q Consensus        82 ~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-------------------------~~a~~~~~~~~  133 (470)
                      -....+   +..+...+.++...+|.||.+...|+..+...+++                         ..|..+..+|+
T Consensus       243 ~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd  322 (1018)
T KOG2002|consen  243 DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGD  322 (1018)
T ss_pred             HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhcc
Confidence            776655   67899999999999999999998888877544443                         44555566799


Q ss_pred             HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC----ChHHHHHH
Q psy16214        134 YRTAMFYLDRAMDQGVAS-KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD----KMDLAVNH  208 (470)
Q Consensus       134 ~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~  208 (470)
                      +++|..+|..++..+|++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|.+|...+    ..+.|..+
T Consensus       323 ~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~  402 (1018)
T KOG2002|consen  323 FEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNV  402 (1018)
T ss_pred             HHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHH
Confidence            999999999999999988 7788899999999999999999999999999999999999999998876    56889999


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHH--------------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q psy16214        209 FQLLLKLAPDHAKAKETYKRAKLL--------------------------KAKKEEGNEKFVAGKNQEAFDIYTEALKI-  261 (470)
Q Consensus       209 ~~~~l~~~p~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~-  261 (470)
                      +.++++..|.+..+|..+.++...                          .-..+.|..++..|++.+|...+..|+.. 
T Consensus       403 l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~  482 (1018)
T KOG2002|consen  403 LGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL  482 (1018)
T ss_pred             HHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence            999999999999988877655321                          12234588899999999999999999866 


Q ss_pred             ----cccC-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        262 ----DARN-ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       262 ----~p~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                          +++. ........+++|.++-.+++++.|.+.|..++..+|.++.++.++|......++..+|...++.++.++.+
T Consensus       483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~  562 (1018)
T KOG2002|consen  483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS  562 (1018)
T ss_pred             hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence                2222 12234568999999999999999999999999999999999999998888889999999999999999987


Q ss_pred             -hhHHHHHHHHHH
Q psy16214        337 -RENHNFLEEAKR  348 (470)
Q Consensus       337 -~~~~~~l~~~~~  348 (470)
                       ++++.++.....
T Consensus       563 np~arsl~G~~~l  575 (1018)
T KOG2002|consen  563 NPNARSLLGNLHL  575 (1018)
T ss_pred             CcHHHHHHHHHHH
Confidence             788888875543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.96  E-value=4.7e-25  Score=224.69  Aligned_cols=320  Identities=13%  Similarity=0.014  Sum_probs=258.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +.....-..++...|++++|+..|.+++..+|..+.++..+|.++...|++++|+..++++++++|.++.++..++.++.
T Consensus        15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~   94 (765)
T PRK10049         15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA   94 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34455556778889999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA  163 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  163 (470)
                      ..|++++|+..++++++..|+++. +..++.+            +...|++++|+..++++++..|++..++..++.++.
T Consensus        95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~------------l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049         95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYV------------YKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHH------------HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999 8666665            667899999999999999999999999999999887


Q ss_pred             HcCCHHHHH----------------------------------------------HHHHHHhhcCCCChHH-------HH
Q psy16214        164 HLNRLQEAQ----------------------------------------------EIANSILATDKQNPDA-------VF  190 (470)
Q Consensus       164 ~~~~~~~A~----------------------------------------------~~~~~~l~~~p~~~~~-------~~  190 (470)
                      ..+..++|+                                              ..++.+++..|.++..       ..
T Consensus       162 ~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~  241 (765)
T PRK10049        162 NNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI  241 (765)
T ss_pred             HCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence            777766544                                              4444444433333322       11


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHhhC---CChHHHHH---------------HHHHHHH---------HHHHHHHHHHHH
Q psy16214        191 VRGLCLYYDDKMDLAVNHFQLLLKLA---PDHAKAKE---------------TYKRAKL---------LKAKKEEGNEKF  243 (470)
Q Consensus       191 ~la~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~---------------~~~~~~~---------~~~~~~~~~~~~  243 (470)
                      ....+++..|++++|+..|+++++..   |.+...+.               .+..+..         .......+.++.
T Consensus       242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~  321 (765)
T PRK10049        242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL  321 (765)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence            11223467799999999999999886   33322211               1111110         011222345677


Q ss_pred             hcCCHHHHHHHHHHHHhhcccCcc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        244 VAGKNQEAFDIYTEALKIDARNIN-----------INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       244 ~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                      ..+++++|+..++++....|....           ....++..++.++...|++++|+..+++++...|.++.++..+|.
T Consensus       322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~  401 (765)
T PRK10049        322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS  401 (765)
T ss_pred             hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            889999999999998888764221           023567889999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        313 CFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++...|++++|+..++++++++|+
T Consensus       402 l~~~~g~~~~A~~~l~~al~l~Pd  425 (765)
T PRK10049        402 VLQARGWPRAAENELKKAEVLEPR  425 (765)
T ss_pred             HHHhcCCHHHHHHHHHHHHhhCCC
Confidence            999999999999999999999997

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.96  E-value=7.2e-25  Score=208.72  Aligned_cols=277  Identities=13%  Similarity=0.003  Sum_probs=243.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      ....+.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...+..... .  ..   
T Consensus        35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~-~--~~---  108 (389)
T PRK11788         35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ-R--LL---  108 (389)
T ss_pred             ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH-H--HH---
Confidence            45567779999999999999999999999999999999999999999999999999999998854332211 0  01   


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-----HHHHH
Q psy16214        118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-----AVFVR  192 (470)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~l  192 (470)
                        .....+..+...|++++|+..+.++++..|....++..++.++...|++++|+..+.++++..|.+..     .+..+
T Consensus       109 --~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l  186 (389)
T PRK11788        109 --ALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL  186 (389)
T ss_pred             --HHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence              12344556788899999999999999999999999999999999999999999999999998887633     56788


Q ss_pred             HHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHH
Q psy16214        193 GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL  272 (470)
Q Consensus       193 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  272 (470)
                      |.++...|++++|+..++++++..|++..++..+            |.++...|++++|+..+++++..+|.+   ...+
T Consensus       187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~  251 (389)
T PRK11788        187 AQQALARGDLDAARALLKKALAADPQCVRASILL------------GDLALAQGDYAAAIEALERVEEQDPEY---LSEV  251 (389)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHChhh---HHHH
Confidence            9999999999999999999999999988887777            999999999999999999999988764   2456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChh
Q psy16214        273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE  338 (470)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  338 (470)
                      +..++.++...|++++|+..++++++..|+... +..++.++...|++++|+..++++++..|+..
T Consensus       252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~  316 (389)
T PRK11788        252 LPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLR  316 (389)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH
Confidence            788999999999999999999999999998754 48999999999999999999999999999743

>KOG1126|consensus

Probab=99.96  E-value=6.5e-27  Score=216.09  Aligned_cols=272  Identities=15%  Similarity=0.109  Sum_probs=253.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      .+..+|..||..++|++|..+|+.+-+..|-.....-....+++.+.+--+---..+..++.+|+.|+.|..+|.||..+
T Consensus       355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ  434 (638)
T KOG1126|consen  355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ  434 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence            56789999999999999999999999999987777777788888888877766777889999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214         86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL  165 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  165 (470)
                      ++++.|+++|+++++++|...-++..+|.-            +.....++.|..+|+.++..+|.+-.+|+.+|.+|.++
T Consensus       435 kdh~~Aik~f~RAiQldp~faYayTLlGhE------------~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kq  502 (638)
T KOG1126|consen  435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHE------------SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQ  502 (638)
T ss_pred             hHHHHHHHHHHHhhccCCccchhhhhcCCh------------hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheecc
Confidence            999999999999999999998888777765            44556788889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214        166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA  245 (470)
Q Consensus       166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (470)
                      ++++.|.-.|++++.++|.+..+...+|.++.+.|+.++|+..+++|+.++|.++......            +.+++..
T Consensus       503 ek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~------------~~il~~~  570 (638)
T KOG1126|consen  503 EKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR------------ASILFSL  570 (638)
T ss_pred             chhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH------------HHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999998887            9999999


Q ss_pred             CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214        246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK  305 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  305 (470)
                      +++++|+..+++.-++.|+    .+.+++.+|.+|.++|+.+.|+..|.-|..++|.-..
T Consensus       571 ~~~~eal~~LEeLk~~vP~----es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  571 GRYVEALQELEELKELVPQ----ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             cchHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            9999999999999999999    6778999999999999999999999999999997554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=1.9e-25  Score=227.72  Aligned_cols=285  Identities=13%  Similarity=0.063  Sum_probs=257.4

Q ss_pred             HHHHHHHHHhhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214         22 KALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ   99 (470)
Q Consensus        22 ~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l   99 (470)
                      .+...+.+++..+|.  ++.+++++|.|+.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|++++
T Consensus       459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~  536 (987)
T PRK09782        459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKIS  536 (987)
T ss_pred             hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            345566666777788  89999999999998 899999999999999999754 46677888889999999999999998


Q ss_pred             hcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy16214        100 ELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL  179 (470)
Q Consensus       100 ~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  179 (470)
                      ...|.+.. +            +..+..+...|++++|+.++.+++...|........++......|++++|+..+++++
T Consensus       537 ~~~p~~~a-~------------~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL  603 (987)
T PRK09782        537 LHDMSNED-L------------LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSL  603 (987)
T ss_pred             ccCCCcHH-H------------HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            87666543 3            2334457888999999999999999999998888777777778899999999999999


Q ss_pred             hcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214        180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL  259 (470)
Q Consensus       180 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  259 (470)
                      +.+|+ +.++..+|.++...|++++|+..|++++.++|+++.++..+            |.++...|++++|+..|++++
T Consensus       604 ~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nL------------G~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        604 NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAAL------------GYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHH
Confidence            99996 99999999999999999999999999999999999999888            999999999999999999999


Q ss_pred             hhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChh
Q psy16214        260 KIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE  338 (470)
Q Consensus       260 ~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  338 (470)
                      +..|++    +.++.++|.++..+|++++|+..|++++.+.|++..+....|.+.....+++.|.+.+++...++|..-
T Consensus       671 ~l~P~~----~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~  745 (987)
T PRK09782        671 KGLPDD----PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS  745 (987)
T ss_pred             HhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence            999994    567999999999999999999999999999999999999999999999999999999999999999743

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=2e-24  Score=220.32  Aligned_cols=302  Identities=12%  Similarity=0.010  Sum_probs=260.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCC-------------------------h
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGM-------------------------Y   54 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~-------------------------~   54 (470)
                      ..+.+...+......|++.+|...|+.++...++-   ......++.+|.....                         +
T Consensus       375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  454 (987)
T PRK09782        375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL  454 (987)
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence            46778889999999999999999999999863322   2334467777766544                         2


Q ss_pred             ---HHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         55 ---TYALDDAKLAVSLDPR--FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF  129 (470)
Q Consensus        55 ---~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  129 (470)
                         ..+...+.+++..+|.  ++.+++.+|.|+.. +++.+|+..+.+++...|++..             ....+..+.
T Consensus       455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-------------~L~lA~al~  520 (987)
T PRK09782        455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-------------HRAVAYQAY  520 (987)
T ss_pred             hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-------------HHHHHHHHH
Confidence               2234445566666788  99999999999998 8999999999999999997532             233344567


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHH
Q psy16214        130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHF  209 (470)
Q Consensus       130 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  209 (470)
                      ..|++++|+..+++++...|.. ..+..+|.++...|++++|+.++.++++.+|.+...+..++......|++++|+..+
T Consensus       521 ~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~  599 (987)
T PRK09782        521 QVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL  599 (987)
T ss_pred             HCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            8899999999999988776664 456788999999999999999999999999999888888887778889999999999


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214        210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA  289 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A  289 (470)
                      +++++.+|+ ...+..+            |.++.+.|++++|+..|++++..+|++    +.++.++|.++...|++++|
T Consensus       600 ~~AL~l~P~-~~a~~~L------------A~~l~~lG~~deA~~~l~~AL~l~Pd~----~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        600 TRSLNIAPS-ANAYVAR------------ATIYRQRHNVPAAVSDLRAALELEPNN----SNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HHHHHhCCC-HHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHH
Confidence            999999997 7777777            999999999999999999999999994    56799999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       290 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +..++++++++|+++.++.++|.++..+|++++|+..|+++++++|+
T Consensus       663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~  709 (987)
T PRK09782        663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN  709 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999999999997

>KOG1155|consensus

Probab=99.95  E-value=2.5e-24  Score=190.36  Aligned_cols=310  Identities=16%  Similarity=0.108  Sum_probs=271.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214         10 DGNTQYKLKQYSKALKCYSEAISV-CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA   88 (470)
Q Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   88 (470)
                      ++.++......++++.-+...+.. -|.+.-.-...|.+.+...++++|+..|+..++.+|-...-.-....+++-..+-
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence            455566666889999999998888 8899999999999999999999999999999999998777777777777766665


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL  168 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~  168 (470)
                      .+-.-.-+.+.+++.-.++....++..+..            +++.++|+.+|+++++++|....+|..+|.-|..+.+.
T Consensus       313 skLs~LA~~v~~idKyR~ETCCiIaNYYSl------------r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt  380 (559)
T KOG1155|consen  313 SKLSYLAQNVSNIDKYRPETCCIIANYYSL------------RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT  380 (559)
T ss_pred             HHHHHHHHHHHHhccCCccceeeehhHHHH------------HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc
Confidence            555555666777777777766666666444            35677888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      ..|++.|+.+++++|.+..+|+.+|.+|..++-+.=|+-+|++++...|.++..|..+            |.+|.+.++.
T Consensus       381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL------------G~CY~kl~~~  448 (559)
T KOG1155|consen  381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL------------GECYEKLNRL  448 (559)
T ss_pred             HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH------------HHHHHHhccH
Confidence            9999999999999999999999999999999999999999999999999999999999            9999999999


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhCCHH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE-------KDPNYLKALSRRCKCFHALGQYK  321 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~  321 (470)
                      ++|+++|.+++.....    ...++..+|.+|.++++.++|..+|++.++       ..|....+...++.-+.+.++++
T Consensus       449 ~eAiKCykrai~~~dt----e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~  524 (559)
T KOG1155|consen  449 EEAIKCYKRAILLGDT----EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFD  524 (559)
T ss_pred             HHHHHHHHHHHhcccc----chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchH
Confidence            9999999999988776    457799999999999999999999999998       45667888889999999999999


Q ss_pred             HHHHHHHHHHhcCCC-hhHHHHHHHHH
Q psy16214        322 ECVIDAEKIYKMDNS-RENHNFLEEAK  347 (470)
Q Consensus       322 ~A~~~~~~a~~~~p~-~~~~~~l~~~~  347 (470)
                      +|..+...++.-++. .+....++++.
T Consensus       525 ~As~Ya~~~~~~~~e~eeak~LlReir  551 (559)
T KOG1155|consen  525 EASYYATLVLKGETECEEAKALLREIR  551 (559)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            999999999998766 55555555443

>KOG1173|consensus

Probab=99.94  E-value=1.1e-23  Score=191.06  Aligned_cols=289  Identities=17%  Similarity=0.129  Sum_probs=233.1

Q ss_pred             chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      ++++.....+..++..++|.+..+.++..++.+|-+..++...--|+..+|+..+-...-.+.++..|+.+..|...|..
T Consensus       242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY  321 (611)
T ss_pred             hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence            45666666677777777777777777777777776655554433366677776666666666677777777666555554


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                                  ++-.+++.+|..++.++..++|....+|...|..+...+..++|+.+|..+-++-|......+.+|.-
T Consensus       322 ------------Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme  389 (611)
T KOG1173|consen  322 ------------YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME  389 (611)
T ss_pred             ------------HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence                        33446666666666677777777778888899999999999999999999999999999999999999


Q ss_pred             HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc----cCccchHH
Q psy16214        196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA----RNININSK  271 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~  271 (470)
                      |.++++++.|.++|.+++.+.|.++.+...+            |.+.+..+.|.+|+.+|+.++..-+    ..+ ....
T Consensus       390 y~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El------------gvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~-~w~p  456 (611)
T KOG1173|consen  390 YMRTNNLKLAEKFFKQALAIAPSDPLVLHEL------------GVVAYTYEEYPEALKYFQKALEVIKSVLNEKI-FWEP  456 (611)
T ss_pred             HHHhccHHHHHHHHHHHHhcCCCcchhhhhh------------hheeehHhhhHHHHHHHHHHHHHhhhcccccc-chhH
Confidence            9999999999999999999999999988887            9999999999999999999984322    222 2356


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHH
Q psy16214        272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSR-ENHNFLEEAKRL  349 (470)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~~  349 (470)
                      ++.++|.++.+++.+++|+..+++++.+.|.++.++..+|.+|..+|+++.|++.|.+++.+.|+. -+.+.|..+...
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            799999999999999999999999999999999999999999999999999999999999999985 556666655433

>KOG2076|consensus

Probab=99.94  E-value=1.1e-22  Score=193.84  Aligned_cols=317  Identities=17%  Similarity=0.138  Sum_probs=250.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..++..|+.++..|++++|..++.++|+.+|.++.+|+.+|.+|..+|+.++|+...-.|-.++|++...|..++...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK-----TYKLM  157 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~  157 (470)
                      .++|++.+|.-+|.++++.+|.+.......+.+            +-+.|+...|...+.+++...|...     .....
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L------------~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~  285 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSL------------YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR  285 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHH------------HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence            999999999999999999999998876554444            5566777777777778887777221     12233


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcC--CCChHHHHHHHHHHhccCChHHHHHHHHHHHh---------------------
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATD--KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK---------------------  214 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---------------------  214 (470)
                      .+..+...++-+.|++.++.++...  -...+.+..++.+++....++.|.........                     
T Consensus       286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~  365 (895)
T KOG2076|consen  286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN  365 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence            4566666666677777777777622  22334556666677777777766665544333                     


Q ss_pred             -hC--CC----hHHH-HHHHH-----------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy16214        215 -LA--PD----HAKA-KETYK-----------------------RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA  263 (470)
Q Consensus       215 -~~--p~----~~~~-~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  263 (470)
                       +.  |+    +..+ ...+.                       ......-+.+.+..+...|++.+|+.++..+....+
T Consensus       366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~  445 (895)
T KOG2076|consen  366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG  445 (895)
T ss_pred             ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc
Confidence             00  00    0011 10000                       001122334558999999999999999999887766


Q ss_pred             cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        264 RNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      .+   +..+|+.+|.||..+|.+++|++.|++++.+.|++.++...++.++..+|+.++|++.+.....-+
T Consensus       446 ~~---~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  446 YQ---NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD  513 (895)
T ss_pred             cc---chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence            55   467899999999999999999999999999999999999999999999999999999999877444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.93  E-value=4.9e-25  Score=199.04  Aligned_cols=262  Identities=19%  Similarity=0.185  Sum_probs=120.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy16214         42 GNRAACYMMLGMYTYALDDAKLAVS-L-DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMA  119 (470)
Q Consensus        42 ~~~a~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  119 (470)
                      +.+|.+++..|++++|++.+.+.+. . .|+++..|..+|.+...+++++.|+..|++++..++.++..+..+..+    
T Consensus        12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l----   87 (280)
T PF13429_consen   12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL----   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----
Confidence            3557777777777777777755443 3 366777777777777777777777777777777776665554333322    


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CCChHHHHHHHHHHh
Q psy16214        120 KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD--KQNPDAVFVRGLCLY  197 (470)
Q Consensus       120 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~  197 (470)
                               +..+++++|+.++.++.+..+ ++..+.....++...++++++...++++....  +.++..|..+|.++.
T Consensus        88 ---------~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  157 (280)
T PF13429_consen   88 ---------LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE  157 (280)
T ss_dssp             ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred             ---------ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence                     345666777777766666543 35556667788899999999999999977654  678889999999999


Q ss_pred             ccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q psy16214        198 YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA  277 (470)
Q Consensus       198 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la  277 (470)
                      ..|+.++|+..++++++.+|+++.+...+            +.++...|+++++.+.++......|+++.    ++..+|
T Consensus       158 ~~G~~~~A~~~~~~al~~~P~~~~~~~~l------------~~~li~~~~~~~~~~~l~~~~~~~~~~~~----~~~~la  221 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALELDPDDPDARNAL------------AWLLIDMGDYDEAREALKRLLKAAPDDPD----LWDALA  221 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH-TT-HHHHHHH------------HHHHCTTCHHHHHHHHHHHHHHH-HTSCC----HCHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHCCChHHHHHHHHHHHHHCcCHHH----HHHHHH
Confidence            99999999999999999999999998888            99999999999999988888888788665    488899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      .++..+|++++|+.++++++..+|+++.++..+|.++...|+.++|..+++++++.
T Consensus       222 ~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  222 AAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             HHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999998753

>TIGR00540 hemY_coli hemY protein

Probab=99.93  E-value=6.9e-22  Score=187.49  Aligned_cols=303  Identities=14%  Similarity=0.058  Sum_probs=253.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-HHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS-KGLIRQIKCN   82 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~   82 (470)
                      +......|...+..|+|+.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|+.. .+....+.++
T Consensus        84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL  163 (409)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence            455678899999999999999999999999998888888999999999999999999999999999885 5666679999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKL----MK  158 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----~~  158 (470)
                      ...|+++.|...++++++..|+++.++..++.+            +...|++++|+..+.+..+..+.++....    ..
T Consensus       164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~------------~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a  231 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEA------------YIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA  231 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            999999999999999999999999998777777            56678888888888888887554443321    12


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCC----CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH--HHHHHHHHH
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDK----QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK--ETYKRAKLL  232 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~~~~~~~~  232 (470)
                      ..-+...+..+++...+.++....|    +++.++..++..+...|++++|+..++++++..|++....  ...      
T Consensus       232 ~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~------  305 (409)
T TIGR00540       232 EIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCL------  305 (409)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHH------
Confidence            2222444455556667778877777    5899999999999999999999999999999999987532  111      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT--LALEKDPNYLKALSRR  310 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l  310 (470)
                            .......++...+++.++++++..|+++.  ..++..+|+++.+.|++++|.++|+  .+++..|+... +..+
T Consensus       306 ------~~~~l~~~~~~~~~~~~e~~lk~~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~L  376 (409)
T TIGR00540       306 ------PIPRLKPEDNEKLEKLIEKQAKNVDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMA  376 (409)
T ss_pred             ------HhhhcCCCChHHHHHHHHHHHHhCCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHH
Confidence                  34445568889999999999999999652  2568899999999999999999999  57788888655 6699


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        311 CKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       311 a~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      |.++..+|+.++|.++|++++..
T Consensus       377 a~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       377 ADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999998764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1174|consensus

Probab=99.92  E-value=3.8e-22  Score=174.19  Aligned_cols=307  Identities=11%  Similarity=-0.008  Sum_probs=261.7

Q ss_pred             HHHHHhcCC--HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214         11 GNTQYKLKQ--YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA   88 (470)
Q Consensus        11 g~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   88 (470)
                      +...+..++  +..+..++-.-...-|+|...+..+|.|++..|++.+|+..|+++..++|....+.-..|.++...|++
T Consensus       203 a~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~  282 (564)
T KOG1174|consen  203 ALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGC  282 (564)
T ss_pred             HHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCH
Confidence            334444444  444455555666677889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL  168 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~  168 (470)
                      +.-......++.+......-|..-+.            ..+..+++..|+.+.++++..+|.+...++..|.++...++.
T Consensus       283 e~~~~L~~~Lf~~~~~ta~~wfV~~~------------~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~  350 (564)
T KOG1174|consen  283 EQDSALMDYLFAKVKYTASHWFVHAQ------------LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH  350 (564)
T ss_pred             hhHHHHHHHHHhhhhcchhhhhhhhh------------hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch
Confidence            98888888888877665555544333            367788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH-HHH-HhcC
Q psy16214        169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG-NEK-FVAG  246 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~  246 (470)
                      ++|+-.|+.+..+.|...++|..+-.+|...|.+.+|...-+.+++.-|.+......+            | .++ ..-.
T Consensus       351 ~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~------------g~~V~~~dp~  418 (564)
T KOG1174|consen  351 TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF------------GTLVLFPDPR  418 (564)
T ss_pred             HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh------------cceeeccCch
Confidence            9999999999999999999999999999999999999999999999999998877766            5 333 3334


Q ss_pred             CHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16214        247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVID  326 (470)
Q Consensus       247 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  326 (470)
                      --++|.+.+++++.+.|.    ...+...++.++...|.+.+++..+++.+...|+ ...+..+|.++...+.+++|...
T Consensus       419 ~rEKAKkf~ek~L~~~P~----Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~  493 (564)
T KOG1174|consen  419 MREKAKKFAEKSLKINPI----YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEY  493 (564)
T ss_pred             hHHHHHHHHHhhhccCCc----cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHH
Confidence            558899999999999999    6677889999999999999999999999999888 56889999999999999999999


Q ss_pred             HHHHHhcCCCh-hHHHHHHHH
Q psy16214        327 AEKIYKMDNSR-ENHNFLEEA  346 (470)
Q Consensus       327 ~~~a~~~~p~~-~~~~~l~~~  346 (470)
                      |.+|+.++|.+ ...+.+.+.
T Consensus       494 y~~ALr~dP~~~~sl~Gl~~l  514 (564)
T KOG1174|consen  494 YYKALRQDPKSKRTLRGLRLL  514 (564)
T ss_pred             HHHHHhcCccchHHHHHHHHH
Confidence            99999999973 344555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.92  E-value=1.8e-21  Score=194.89  Aligned_cols=322  Identities=11%  Similarity=0.033  Sum_probs=243.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      .+..+|..+...|+|++|++.|+++++.+|+++.++..++.++...++.++|+..+++++..+|.+... ..++.++...
T Consensus       104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~  182 (822)
T PRK14574        104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRAT  182 (822)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhc
Confidence            444557799999999999999999999999999999999999999999999999999999999986554 6667777677


Q ss_pred             CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------------
Q psy16214         86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-----------------------------------  130 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-----------------------------------  130 (470)
                      ++..+|+..++++++.+|++.+++..+..+....+....|..+..                                   
T Consensus       183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~  262 (822)
T PRK14574        183 DRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE  262 (822)
T ss_pred             chHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence            888779999999999999999887776666543333322222211                                   


Q ss_pred             ------------------------------------------cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Q psy16214        131 ------------------------------------------ANDYRTAMFYLDRAMDQG-VASKTYKLMKAECLAHLNR  167 (470)
Q Consensus       131 ------------------------------------------~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~  167 (470)
                                                                .+++.+++..|+.+.... |-...+....|..|+..++
T Consensus       263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~  342 (822)
T PRK14574        263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL  342 (822)
T ss_pred             hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence                                                      144555555554444333 2233445556666666777


Q ss_pred             HHHHHHHHHHHhhcCCC------ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC---------------ChHHHHHHH
Q psy16214        168 LQEAQEIANSILATDKQ------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP---------------DHAKAKETY  226 (470)
Q Consensus       168 ~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---------------~~~~~~~~~  226 (470)
                      .++|+.+|..++...|.      +......+-.+++..+++++|..++++..+..|               +....... 
T Consensus       343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l-  421 (822)
T PRK14574        343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL-  421 (822)
T ss_pred             cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH-
Confidence            77777777766654421      222234555666667777777777776666444               11112222 


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214        227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA  306 (470)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (470)
                                 ++.++...|++.+|.+.+++.+...|.|    ..++..+|.++...|.+.+|...++.++.++|++..+
T Consensus       422 -----------~a~~~~~~gdl~~Ae~~le~l~~~aP~n----~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~  486 (822)
T PRK14574        422 -----------LVQSLVALNDLPTAQKKLEDLSSTAPAN----QNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL  486 (822)
T ss_pred             -----------HHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence                       3888899999999999999999999995    5669999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHH
Q psy16214        307 LSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLE  344 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~  344 (470)
                      ...+|.+++.++++.+|.....++++..|+......|.
T Consensus       487 ~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~  524 (822)
T PRK14574        487 ERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELD  524 (822)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHH
Confidence            99999999999999999999999999999855444443

>KOG2003|consensus

Probab=99.92  E-value=3.7e-22  Score=176.35  Aligned_cols=189  Identities=15%  Similarity=0.091  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214        132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL  211 (470)
Q Consensus       132 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (470)
                      |++++|...|..++..+....++++++|..+..+|+.++|+.+|-++-.+--++.++++.++.+|..+.+..+|++.+.+
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q  583 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ  583 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence            45555555555555555555555555555555555555555555554444444555555555555555555555555555


Q ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHH
Q psy16214        212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIA  291 (470)
Q Consensus       212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~  291 (470)
                      +..+-|+++.++..+            |..|-+.|+-.+|..++-...+..|.+.    .+...+|..|....-+++|+.
T Consensus       584 ~~slip~dp~ilskl------------~dlydqegdksqafq~~ydsyryfp~ni----e~iewl~ayyidtqf~ekai~  647 (840)
T KOG2003|consen  584 ANSLIPNDPAILSKL------------ADLYDQEGDKSQAFQCHYDSYRYFPCNI----ETIEWLAAYYIDTQFSEKAIN  647 (840)
T ss_pred             hcccCCCCHHHHHHH------------HHHhhcccchhhhhhhhhhcccccCcch----HHHHHHHHHHHhhHHHHHHHH
Confidence            555555555554444            5555555555555555555455555432    224444555555555555555


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        292 DCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       292 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +|+++--+.|+...-....+.|+.+.|+|.+|...|+..-...|.
T Consensus       648 y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe  692 (840)
T KOG2003|consen  648 YFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE  692 (840)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc
Confidence            555555555555555555555555555555555555555555553

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=3.1e-25  Score=195.90  Aligned_cols=99  Identities=45%  Similarity=0.702  Sum_probs=80.3

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcC-CC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIME-DS  433 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~-~~  433 (470)
                      .++||++|||+++|+.+|||+|||++|++||||+++.     .++++++|++|++||||||||+||+.||..++... .+
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g-----~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~g   77 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG-----DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAG   77 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccC
Confidence            4789999999999999999999999999999999995     36899999999999999999999999998666543 23


Q ss_pred             CCCC--CCccchhHHHHHHHhcCCCCC
Q psy16214        434 GMGG--HAGANLFEQHMFQTYFDPGCR  458 (470)
Q Consensus       434 ~~~~--~~~~~~~~~~~~~~~~~~~~~  458 (470)
                      |++|  +.+++...+++|.+||+||++
T Consensus        78 g~gg~g~~~fgg~~~DIF~~~FgGg~~  104 (371)
T COG0484          78 GFGGFGFGGFGGDFGDIFEDFFGGGGG  104 (371)
T ss_pred             CcCCCCcCCCCCCHHHHHHHhhcCCCc
Confidence            3332  232221128999999975544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.92  E-value=1e-20  Score=189.56  Aligned_cols=323  Identities=11%  Similarity=-0.040  Sum_probs=247.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++..+..+...++.|+++.|+..|+++++.+|.++.....++.++...|+.++|+..+++++.-.|.....+..+|.++
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            56788999999999999999999999999999999655558888999999999999999999944455555666668899


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCCHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE---------------------ANDYRTAMFYL  141 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------~~~~~~A~~~~  141 (470)
                      ...|++++|++.|+++++.+|+++.++..++.++...+....|...+.                     .++..+|+..+
T Consensus       113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~  192 (822)
T PRK14574        113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS  192 (822)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence            999999999999999999999999999888787766666666555433                     25666699999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-----------------------------------------------
Q psy16214        142 DRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI-----------------------------------------------  174 (470)
Q Consensus       142 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-----------------------------------------------  174 (470)
                      +++++.+|++..++..+..++...|-...|.+.                                               
T Consensus       193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala  272 (822)
T PRK14574        193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA  272 (822)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence            999999999988877777666665554433333                                               


Q ss_pred             -HHHHhhcCCCCh------------------------------------------HHHHHHHHHHhccCChHHHHHHHHH
Q psy16214        175 -ANSILATDKQNP------------------------------------------DAVFVRGLCLYYDDKMDLAVNHFQL  211 (470)
Q Consensus       175 -~~~~l~~~p~~~------------------------------------------~~~~~la~~~~~~g~~~~A~~~~~~  211 (470)
                       ++.++...+..|                                          .+....|..|+..+++++|+.+|+.
T Consensus       273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~  352 (822)
T PRK14574        273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS  352 (822)
T ss_pred             HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence             333333222211                                          1223344445555555555555555


Q ss_pred             HHhhCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc------------cCccchHHHHHH
Q psy16214        212 LLKLAPD----HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA------------RNININSKLLHN  275 (470)
Q Consensus       212 ~l~~~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------~~~~~~~~~~~~  275 (470)
                      ++.-.|.    ....          ........+++..+++++|..++++.....|            .|++ ...+...
T Consensus       353 ~~~~~~~~~~~~~~~----------~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d-~~~~~~l  421 (822)
T PRK14574        353 LYYSDGKTFRNSDDL----------LDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD-WIEGQTL  421 (822)
T ss_pred             HhhccccccCCCcch----------HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc-HHHHHHH
Confidence            5543321    0000          0012237788999999999999999987555            1222 3577888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++.++...|++.+|++.+++.+...|.++.++..+|.++...|.+..|...++.+..++|.
T Consensus       422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~  482 (822)
T PRK14574        422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR  482 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence            9999999999999999999999999999999999999999999999999999999999996

>PRK12370 invasion protein regulator; Provisional

Probab=99.91  E-value=9.3e-22  Score=193.48  Aligned_cols=263  Identities=16%  Similarity=0.048  Sum_probs=200.6

Q ss_pred             HHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---------ChHHHHHHHHHHHhcCCCChHH
Q psy16214         41 YGNRAACYMML---GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG---------DAPTARSNLKALQELDPDNPAI  108 (470)
Q Consensus        41 ~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l~~~p~~~~~  108 (470)
                      ++.+|...+..   +.+++|+..|+++++++|+++.++..+|.++..++         ++++|+..++++++++|+++.+
T Consensus       261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a  340 (553)
T PRK12370        261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQA  340 (553)
T ss_pred             HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHH
Confidence            44455544332   34678888888888888888888888888776443         3788888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHH
Q psy16214        109 AQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA  188 (470)
Q Consensus       109 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  188 (470)
                      +..++.+            +...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++++|.++..
T Consensus       341 ~~~lg~~------------~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        341 LGLLGLI------------NTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA  408 (553)
T ss_pred             HHHHHHH------------HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence            8766665            5556788888888888888888888888888999999999999999999999999988877


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214        189 VFVRGLCLYYDDKMDLAVNHFQLLLKLA-PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN  267 (470)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  267 (470)
                      +..++.+++..|++++|+..+++++... |+++..+..+            |.++...|++++|...+.++....|.   
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l------------a~~l~~~G~~~eA~~~~~~~~~~~~~---  473 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ------------VMFLSLKGKHELARKLTKEISTQEIT---  473 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH------------HHHHHhCCCHHHHHHHHHHhhhccch---
Confidence            7777777777888899999998888764 6777777776            88888889999999988887777776   


Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        268 INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                       ...++..++.++...|+  +|...+++.++.......-......++.-.|+.+.|..+ +++.+..
T Consensus       474 -~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        474 -GLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             -hHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence             34557777888887774  666666666554333222233377888888888887777 6666554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.91  E-value=4.4e-24  Score=192.82  Aligned_cols=263  Identities=23%  Similarity=0.227  Sum_probs=120.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhc--CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISV--CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      .+..|..++..|++++|++.+.+.+..  .|+++..|..+|.+...+++++.|+..|++++..++.++..+..++.+ ..
T Consensus        11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence            346699999999999999999776554  488999999999999999999999999999999999999999999988 79


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG--VASKTYKLMKAECL  162 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~  162 (470)
                      .+++++|+.++.++.+..+ ++..+.....+            +...++++++...++++....  +.++.++..+|.++
T Consensus        90 ~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~  156 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERDG-DPRYLLSALQL------------YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIY  156 (280)
T ss_dssp             -----------------------------H-------------HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHH
T ss_pred             ccccccccccccccccccc-ccchhhHHHHH------------HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            9999999999999887654 34444333332            566788999999999977654  67889999999999


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK  242 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (470)
                      ...|++++|+.+++++++.+|+++.++..++.++...|+.+++...+.......|+++..+..+            |.++
T Consensus       157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l------------a~~~  224 (280)
T PF13429_consen  157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL------------AAAY  224 (280)
T ss_dssp             HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH------------HHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH------------HHHh
Confidence            9999999999999999999999999999999999999999999999999888888888888888            9999


Q ss_pred             HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       243 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      ...|++++|+.+|++++...|+++    .++..+|.++...|+.++|..+..+++..
T Consensus       225 ~~lg~~~~Al~~~~~~~~~~p~d~----~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  225 LQLGRYEEALEYLEKALKLNPDDP----LWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHT-HHHHHHHHHHHHHHSTT-H----HHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccc----ccccccccccccccccccccccccccccc
Confidence            999999999999999999999954    56899999999999999999999988753

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.91  E-value=1.6e-20  Score=177.16  Aligned_cols=300  Identities=13%  Similarity=0.079  Sum_probs=241.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH-HHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKG-LIRQIKC   81 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~   81 (470)
                      .+...+..|...+..|+|++|.+...++-+..+.....+...+.+....|+++.|..++.++.+.+|+...+ ....+.+
T Consensus        83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI  162 (398)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            345678889999999999999988888766543333344444666699999999999999999999998544 3455999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH-----
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKL-----  156 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-----  156 (470)
                      +...|+++.|...++++.+..|+++.+...+..+            +...|++++|+..+.++.+..+.++....     
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~------------~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~  230 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA------------YIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQ  230 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999999999999999999999998877777            45557888888888888877665543222     


Q ss_pred             ---HHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Q psy16214        157 ---MKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK  233 (470)
Q Consensus       157 ---~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  233 (470)
                         .+........+-+...+.++...+..|+++.+...++..+...|+.++|...++++++..| ++.....+       
T Consensus       231 a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~-------  302 (398)
T PRK10747        231 AWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLI-------  302 (398)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHH-------
Confidence               1122222334455566666666667788999999999999999999999999999999555 44433333       


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                           +.  ...++.+++++..++.++..|++    +.++..+|.++...+++.+|.++|+++++..|++ ..+..++.+
T Consensus       303 -----~~--l~~~~~~~al~~~e~~lk~~P~~----~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~  370 (398)
T PRK10747        303 -----PR--LKTNNPEQLEKVLRQQIKQHGDT----PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADA  370 (398)
T ss_pred             -----hh--ccCCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Confidence                 33  35599999999999999999995    4569999999999999999999999999999996 456789999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcC
Q psy16214        314 FHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       314 ~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      +..+|+.++|..+|++++.+.
T Consensus       371 ~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        371 LDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHcCCHHHHHHHHHHHHhhh
Confidence            999999999999999998764

>KOG1125|consensus

Probab=99.91  E-value=1.1e-22  Score=185.43  Aligned_cols=260  Identities=17%  Similarity=0.165  Sum_probs=195.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD   87 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   87 (470)
                      +..|..+++.|+..+|+-+|+.+++.+|.++++|..||.+....++-..|+..+++|++++|++.+++..||.+|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy16214         88 APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR  167 (470)
Q Consensus        88 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~  167 (470)
                      -.+|+.++.+-+...|........                 -..+.+..         ...+.+...             
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a-----------------~~~~~~~~---------~~s~~~~~~-------------  409 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSA-----------------GENEDFEN---------TKSFLDSSH-------------  409 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhcccc-----------------CccccccC---------CcCCCCHHH-------------
Confidence            999999999888877653221000                 00000000         001111111             


Q ss_pred             HHHHHHHHHHHhhcCC--CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214        168 LQEAQEIANSILATDK--QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA  245 (470)
Q Consensus       168 ~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (470)
                      +..-.+.|-.+....|  .++++...||.+|...|+|++|+.+|+.+|...|++...|..+            |-++...
T Consensus       410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRL------------GAtLAN~  477 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRL------------GATLANG  477 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHh------------hHHhcCC
Confidence            1223344555555666  6788888888888888888888888888888888888888888            8888888


Q ss_pred             CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHH
Q psy16214        246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----------LKALSRRCKCFH  315 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~  315 (470)
                      .+.++|+..|++|+++.|.    ..++++++|.+++.+|.|++|+++|-.||.+.+..          -.+|-.|=.++.
T Consensus       478 ~~s~EAIsAY~rALqLqP~----yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als  553 (579)
T KOG1125|consen  478 NRSEEAISAYNRALQLQPG----YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS  553 (579)
T ss_pred             cccHHHHHHHHHHHhcCCC----eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence            8888888888888888888    55678888888888888888888888888875541          235555555555


Q ss_pred             HhCCHHH
Q psy16214        316 ALGQYKE  322 (470)
Q Consensus       316 ~~g~~~~  322 (470)
                      .+++.+.
T Consensus       554 ~~~~~D~  560 (579)
T KOG1125|consen  554 AMNRSDL  560 (579)
T ss_pred             HcCCchH
Confidence            5665553

>PRK12370 invasion protein regulator; Provisional

Probab=99.90  E-value=3.8e-21  Score=189.19  Aligned_cols=228  Identities=13%  Similarity=-0.014  Sum_probs=201.8

Q ss_pred             CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214         86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL  165 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  165 (470)
                      +++++|+..|+++++++|+++.++..++.++...+....   ....+++++|+..++++++.+|+++.++..+|.++...
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~---~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI---FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC---cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            467999999999999999999999999988766543211   12456789999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214        166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA  245 (470)
Q Consensus       166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (470)
                      |++++|+..++++++++|+++.+++.+|.++...|++++|+..++++++++|.++.....+            +.+++..
T Consensus       352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~------------~~~~~~~  419 (553)
T PRK12370        352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK------------LWITYYH  419 (553)
T ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH------------HHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999988765554            6667788


Q ss_pred             CCHHHHHHHHHHHHhhc-ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16214        246 GKNQEAFDIYTEALKID-ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV  324 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  324 (470)
                      |++++|+..+++++... |+    .+.++.++|.++..+|++++|...+.++....|....++..++.+|...|+  +|.
T Consensus       420 g~~eeA~~~~~~~l~~~~p~----~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~  493 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQD----NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RAL  493 (553)
T ss_pred             cCHHHHHHHHHHHHHhcccc----CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHH
Confidence            99999999999999875 55    345689999999999999999999999999999999999999999999884  788


Q ss_pred             HHHHHHHhcC
Q psy16214        325 IDAEKIYKMD  334 (470)
Q Consensus       325 ~~~~~a~~~~  334 (470)
                      ..++++++..
T Consensus       494 ~~l~~ll~~~  503 (553)
T PRK12370        494 PTIREFLESE  503 (553)
T ss_pred             HHHHHHHHHh
Confidence            8777776643

>KOG0495|consensus

Probab=99.90  E-value=3.7e-20  Score=170.61  Aligned_cols=321  Identities=17%  Similarity=0.071  Sum_probs=267.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      -..|..-+..+...+-++-|+..|..+|+..|....+|...+..--.-|..++-...+++++..-|.....|+..+..+.
T Consensus       516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w  595 (913)
T KOG0495|consen  516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKW  595 (913)
T ss_pred             HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHH
Confidence            35688889999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCCHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE---------------------ANDYRTAMFYLD  142 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------~~~~~~A~~~~~  142 (470)
                      ..|+...|...+..+++.+|++.++|..-..+......++.|..++.                     .++.++|+.+++
T Consensus       596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllE  675 (913)
T KOG0495|consen  596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLE  675 (913)
T ss_pred             hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999887777766666666666544                     388999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHH
Q psy16214        143 RAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA  222 (470)
Q Consensus       143 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  222 (470)
                      .+++..|+...+|+.+|.++.+.++.+.|...|...++..|+.+..|..++.+-...|+.-.|...++++.-.+|++...
T Consensus       676 e~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~l  755 (913)
T KOG0495|consen  676 EALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALL  755 (913)
T ss_pred             HHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--------------------------hHHHHHHH
Q psy16214        223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--------------------------NSKLLHNR  276 (470)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------------------------~~~~~~~l  276 (470)
                      |...            ...-++.|+.+.|.....+|++.+|++..+                          ++.++...
T Consensus       756 wle~------------Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllai  823 (913)
T KOG0495|consen  756 WLES------------IRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAI  823 (913)
T ss_pred             HHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHH
Confidence            8776            777888999999999999999999885322                          23444455


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      |..+....++++|.++|.+++..+|++.++|...-..+...|.-++-.+.+.++..-.|.
T Consensus       824 a~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~  883 (913)
T KOG0495|consen  824 AKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT  883 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence            555555555555555555555555555555555555555555555555555555555554

>KOG2076|consensus

Probab=99.89  E-value=1.4e-19  Score=172.99  Aligned_cols=298  Identities=15%  Similarity=0.093  Sum_probs=229.2

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      ...+...|..++..|++++|...+..+|..+|.++.+|+.||.+|.++|+.++|...+-.|-.++|.+.+.|..++.+  
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl--  216 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL--  216 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH--
Confidence            456677788888999999999999999999999999999999999999999999999999999999999999888777  


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-----HHHHHH
Q psy16214        118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP-----DAVFVR  192 (470)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~l  192 (470)
                                ..+.|++.+|.-+|.++++.+|.+....+.++.+|.++|+...|...+.+++...|...     +.....
T Consensus       217 ----------s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~  286 (895)
T KOG2076|consen  217 ----------SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV  286 (895)
T ss_pred             ----------HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence                      55668888999999999999999999999999999999999999999999999999321     233445


Q ss_pred             HHHHhccCChHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHHH-----------------------------------
Q psy16214        193 GLCLYYDDKMDLAVNHFQLLLKLAPD--HAKAKETYKRAKLLKAK-----------------------------------  235 (470)
Q Consensus       193 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~-----------------------------------  235 (470)
                      +..+...++-+.|++.+..++....+  .......+..+......                                   
T Consensus       287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~  366 (895)
T KOG2076|consen  287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA  366 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence            67778888889999999999883221  11112222100000000                                   


Q ss_pred             ----------------HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        236 ----------------KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       236 ----------------~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                                      ...+.+..+.....+++..+..--...|.   ....++..++.++...|++.+|+.++..++..
T Consensus       367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~---d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~  443 (895)
T KOG2076|consen  367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVS---DDVDLYLDLADALTNIGKYKEALRLLSPITNR  443 (895)
T ss_pred             cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChh---hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence                            00011222222333333322221111122   25688999999999999999999999999887


Q ss_pred             CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214        300 DPN-YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL  350 (470)
Q Consensus       300 ~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~  350 (470)
                      .+. +..+|+.+|.||..+|.+++|+.+|++++.+.|+ .+++-.|...+..+
T Consensus       444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~  496 (895)
T KOG2076|consen  444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL  496 (895)
T ss_pred             ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence            654 3779999999999999999999999999999998 66666665554443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.89  E-value=2.5e-20  Score=168.52  Aligned_cols=232  Identities=14%  Similarity=0.067  Sum_probs=114.5

Q ss_pred             ChHHHHHHHHHHHhcC---CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         53 MYTYALDDAKLAVSLD---PR-FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA  128 (470)
Q Consensus        53 ~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  128 (470)
                      ..+.++..+.+++...   |. .+..|+.+|.++...|++++|+..|+++++++|+++.++..++.+            +
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~------------~  108 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY------------L  108 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH------------H
Confidence            4444555555555322   21 134455555555555555555555555555555554443332222            2


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHH
Q psy16214        129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNH  208 (470)
Q Consensus       129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~  208 (470)
                      ...|++++|+..++++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~  187 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKEN  187 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHH
Confidence            233333333333333344444444455566666666777777777777777777766532111 1223345566777777


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHHHHH----hhcccCccchHHHHHHHHHHHHH
Q psy16214        209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA--FDIYTEAL----KIDARNININSKLLHNRATVLFK  282 (470)
Q Consensus       209 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A--~~~~~~al----~~~p~~~~~~~~~~~~la~~~~~  282 (470)
                      +.+.+...+.....   .            +...+..|++.++  +..+.+.+    ++.|.    ...+|+++|.++..
T Consensus       188 l~~~~~~~~~~~~~---~------------~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~----~~ea~~~Lg~~~~~  248 (296)
T PRK11189        188 LKQRYEKLDKEQWG---W------------NIVEFYLGKISEETLMERLKAGATDNTELAER----LCETYFYLAKYYLS  248 (296)
T ss_pred             HHHHHhhCCccccH---H------------HHHHHHccCCCHHHHHHHHHhcCCCcHHHHHH----HHHHHHHHHHHHHH
Confidence            75555432221111   1            3333334443222  22222222    22222    34567777777777


Q ss_pred             cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Q psy16214        283 MGKYNEAIADCTLALEKDP-NYLKALSRRCKCFHA  316 (470)
Q Consensus       283 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~  316 (470)
                      +|++++|+.+|+++++.+| ++++..+.+..+...
T Consensus       249 ~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~  283 (296)
T PRK11189        249 LGDLDEAAALFKLALANNVYNFVEHRYALLELALL  283 (296)
T ss_pred             CCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            7777777777777777765 445544444444433

>KOG0548|consensus

Probab=99.89  E-value=1.7e-19  Score=163.30  Aligned_cols=330  Identities=21%  Similarity=0.271  Sum_probs=227.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy16214         41 YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK  120 (470)
Q Consensus        41 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  120 (470)
                      .-..|...+..|+|+.|+..|..+|.++|.+...|.+...+|..+|+|++|++.-.+.++++|+-+..|..+|..     
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa-----   79 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAA-----   79 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHH-----
Confidence            345688889999999999999999999999999999999999999999999999999999999999988777666     


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------HHHHHHHHH
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR------------------------LQEAQEIAN  176 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------------------------~~~A~~~~~  176 (470)
                             ++-.|+|++|+..|.+.++.+|++..+...++.++.....                        .+.+.....
T Consensus        80 -------~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l  152 (539)
T KOG0548|consen   80 -------LFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKIL  152 (539)
T ss_pred             -------HHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHH
Confidence                   5566777777777777777777777776666666522100                        000111111


Q ss_pred             HHhhcCCCC--------------------------------------------------------------hHHHHHHHH
Q psy16214        177 SILATDKQN--------------------------------------------------------------PDAVFVRGL  194 (470)
Q Consensus       177 ~~l~~~p~~--------------------------------------------------------------~~~~~~la~  194 (470)
                      +.+..+|.+                                                              ....-.+|.
T Consensus       153 ~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn  232 (539)
T KOG0548|consen  153 EIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN  232 (539)
T ss_pred             HHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence            111111100                                                              012345667


Q ss_pred             HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHH----------------------------H-HHHHHHHHHHHHHhc
Q psy16214        195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA----------------------------K-LLKAKKEEGNEKFVA  245 (470)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~----------------------------~-~~~~~~~~~~~~~~~  245 (470)
                      ..+...++..|+++|..+++++ .+.........+                            . ........|..+...
T Consensus       233 aaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~  311 (539)
T KOG0548|consen  233 AAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR  311 (539)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            7777777777777777777766 333222211110                            0 111122247888999


Q ss_pred             CCHHHHHHHHHHHHhhccc-----------------------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        246 GKNQEAFDIYTEALKIDAR-----------------------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~p~-----------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                      ++++.|+.+|.+++...-+                       ++. .+.--...|..++..|+|..|+..|.++|..+|+
T Consensus       312 ~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe-~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~  390 (539)
T KOG0548|consen  312 EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPE-KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE  390 (539)
T ss_pred             HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChh-HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence            9999999999998854322                       111 1334445689999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHH--HHHHhhccc--ccchhhhccCCCCCCHHHHHHHHH
Q psy16214        303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEE--AKRLLKRSE--VKDYYKILGVTKNASSDDIKKAYR  378 (470)
Q Consensus       303 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~--~~~~~~~~~--~~~~y~~lg~~~~~~~~ei~~ay~  378 (470)
                      ++.+|.++|.||..+|.+..|+.+.+++++++|+ -+...+++  +...+++-.  ...|.+.+.+.  .+..++...|+
T Consensus       391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~~  467 (539)
T KOG0548|consen  391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGYR  467 (539)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence            9999999999999999999999999999999996 22223333  333333221  23344444443  55567777777


Q ss_pred             HHHHHcCCC
Q psy16214        379 KRALVHHPD  387 (470)
Q Consensus       379 ~~~~~~~pd  387 (470)
                      +.....+-+
T Consensus       468 rc~~a~~~~  476 (539)
T KOG0548|consen  468 RCVEAQRGD  476 (539)
T ss_pred             HHHHHhhcC
Confidence            766655333

>KOG1174|consensus

Probab=99.88  E-value=5.3e-20  Score=160.94  Aligned_cols=279  Identities=14%  Similarity=0.049  Sum_probs=254.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      ++..+..+|.+++..|++.+|+..|+++..++|.+....-..|..+...|+++.--......+..+.....-|+--+..+
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l  310 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL  310 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence            56778899999999999999999999999999999999999999999999999999999999998888888899899999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      +..+++..|+.+-++++..+|.+..++...|.+            ++..++.++|+-.|+.+..+.|.....+..+..+|
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~l------------L~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY  378 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRL------------LIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY  378 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHH------------HHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence            999999999999999999999999998666666            67778889999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHH-HHHhc-cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRG-LCLYY-DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN  240 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la-~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (470)
                      +..|++.+|.-..+.+++.-|.++.++..+| .++.. ----++|.+.+++++.+.|....+...+            +.
T Consensus       379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~------------AE  446 (564)
T KOG1174|consen  379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLI------------AE  446 (564)
T ss_pred             HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHH------------HH
Confidence            9999999999999999999999999999997 44443 3446899999999999999999988887            99


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214        241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR  310 (470)
Q Consensus       241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (470)
                      .+...|.+..++.++++.+...|+.     .++..+|.++...+.+.+|+++|..|+.++|++..++..+
T Consensus       447 L~~~Eg~~~D~i~LLe~~L~~~~D~-----~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  447 LCQVEGPTKDIIKLLEKHLIIFPDV-----NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             HHHhhCccchHHHHHHHHHhhcccc-----HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence            9999999999999999999999874     5688999999999999999999999999999987665443

>KOG1129|consensus

Probab=99.88  E-value=1.6e-20  Score=159.46  Aligned_cols=265  Identities=15%  Similarity=0.118  Sum_probs=232.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHhcC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         46 ACYMMLGMYTYALDDAKLAVSLD---PR-------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        46 ~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      .+++...+...|-..+...++++   |.       +.+-...+|+||+.+|-+.+|.+.++..++..|. ++.+..++.+
T Consensus       187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskv  265 (478)
T KOG1129|consen  187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKV  265 (478)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHH
Confidence            45667777777777666665542   21       2233457899999999999999999999987764 4555555555


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                                  +....++..|+..+...++..|.+...+...|+++..++++++|+++|+.+++.+|.+.++.-.+|.-
T Consensus       266 ------------Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~  333 (478)
T KOG1129|consen  266 ------------YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG  333 (478)
T ss_pred             ------------HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence                        44557788888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214        196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN  275 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  275 (470)
                      |+..++++-|+.+|++++.+--.+++...++            |.+.+..++++-++..|++++....+.. ..+.+|++
T Consensus       334 yfY~~~PE~AlryYRRiLqmG~~speLf~Ni------------gLCC~yaqQ~D~~L~sf~RAlstat~~~-~aaDvWYN  400 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQMGAQSPELFCNI------------GLCCLYAQQIDLVLPSFQRALSTATQPG-QAADVWYN  400 (478)
T ss_pred             cccCCChHHHHHHHHHHHHhcCCChHHHhhH------------HHHHHhhcchhhhHHHHHHHHhhccCcc-hhhhhhhc
Confidence            9999999999999999999999999999888            9999999999999999999997754322 25789999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +|.+....|++.-|..+|+-++..+|++.+++.++|.+-.+.|+.++|..+++.+..+.|.
T Consensus       401 lg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  401 LGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             cceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            9999999999999999999999999999999999999999999999999999999999996

>KOG1173|consensus

Probab=99.88  E-value=1.6e-19  Score=164.19  Aligned_cols=336  Identities=15%  Similarity=0.087  Sum_probs=272.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-----------------ChHHHHHHHHHHH--
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-----------------MYTYALDDAKLAV--   65 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-----------------~~~~A~~~~~~al--   65 (470)
                      ...+.+|.+|....+.++|...|.+|+..++.+.++...+-...+..-                 ...+-++.+-++.  
T Consensus       142 sic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~  221 (611)
T KOG1173|consen  142 SICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLC  221 (611)
T ss_pred             ceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhh
Confidence            346778999999999999999999999999988766655544433222                 1111111111111  


Q ss_pred             --------hcCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         66 --------SLDP--------RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF  129 (470)
Q Consensus        66 --------~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  129 (470)
                              ..+|        ++.......+..+...+++.+..+.....++.+|-+...+-...           | .++
T Consensus       222 k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i-----------a-~l~  289 (611)
T KOG1173|consen  222 KNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI-----------A-CLY  289 (611)
T ss_pred             hhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH-----------H-HHH
Confidence                    0122        25667788899999999999999999999999998887653221           1 356


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHH
Q psy16214        130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHF  209 (470)
Q Consensus       130 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  209 (470)
                      +.|+..+-...-.++++..|+.+-.|+..|..|...|++++|..++.++..++|....+|...|..+...+..++|+.+|
T Consensus       290 el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY  369 (611)
T KOG1173|consen  290 ELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAY  369 (611)
T ss_pred             HhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHH
Confidence            66777777777788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214        210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA  289 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A  289 (470)
                      ..|.++-|........+            |.-|...++++-|...|.+|+.+.|.+|-    ++..+|.+.+..+.|.+|
T Consensus       370 ~tAarl~~G~hlP~LYl------------gmey~~t~n~kLAe~Ff~~A~ai~P~Dpl----v~~Elgvvay~~~~y~~A  433 (611)
T KOG1173|consen  370 FTAARLMPGCHLPSLYL------------GMEYMRTNNLKLAEKFFKQALAIAPSDPL----VLHELGVVAYTYEEYPEA  433 (611)
T ss_pred             HHHHHhccCCcchHHHH------------HHHHHHhccHHHHHHHHHHHHhcCCCcch----hhhhhhheeehHhhhHHH
Confidence            99999999988877777            99999999999999999999999999664    589999999999999999


Q ss_pred             HHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcc--cccchh
Q psy16214        290 IADCTLALEKD-------PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRS--EVKDYY  359 (470)
Q Consensus       290 ~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~--~~~~~y  359 (470)
                      ..+|+.++..-       +.....+.++|.++.+++.+++|+.+|++++.+.|. ......+.-+...++.-  ....+.
T Consensus       434 ~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fh  513 (611)
T KOG1173|consen  434 LKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFH  513 (611)
T ss_pred             HHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence            99999999442       223567899999999999999999999999999997 66777777666666532  234455


Q ss_pred             hhccCCCCC
Q psy16214        360 KILGVTKNA  368 (470)
Q Consensus       360 ~~lg~~~~~  368 (470)
                      +.|.+.+..
T Consensus       514 KaL~l~p~n  522 (611)
T KOG1173|consen  514 KALALKPDN  522 (611)
T ss_pred             HHHhcCCcc
Confidence            666665544

>KOG1156|consensus

Probab=99.88  E-value=4e-19  Score=163.99  Aligned_cols=332  Identities=16%  Similarity=0.126  Sum_probs=253.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      ..++..+...+..++|...+...+.+++..|++++.+...|..+..+|+-++|......++..++.+...|.-+|.++..
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhh
Confidence            36888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH----------------------HHHHHHhcCCHHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE----------------------GASKAFEANDYRTAMFYLD  142 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~----------------------~a~~~~~~~~~~~A~~~~~  142 (470)
                      ..+|++|+++|..|+.++|+|..++..++.+....+.++                      .|......|++..|+..++
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~  167 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILE  167 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888776554443                      2333444577777777777


Q ss_pred             HHHHhC---CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214        143 RAMDQG---VASK-----TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       143 ~~l~~~---p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                      ...+..   |...     ........++...|.+++|++.+..--...-+.....-..+.++...+++++|+..+...+.
T Consensus       168 ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~  247 (700)
T KOG1156|consen  168 EFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE  247 (700)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence            666554   3222     23444556667777777777766654433334445566778899999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHH-HHHHHHHHHHHH---------------------hcCCHHHH---------------------
Q psy16214        215 LAPDHAKAKETYKRAKL-LKAKKEEGNEKF---------------------VAGKNQEA---------------------  251 (470)
Q Consensus       215 ~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~A---------------------  251 (470)
                      .+|++...+..+..+.. .......-...+                     .-.++...                     
T Consensus       248 rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~  327 (700)
T KOG1156|consen  248 RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR  327 (700)
T ss_pred             hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH
Confidence            99999887777655542 111111000000                     00011111                     


Q ss_pred             --------HHHHHHHHh-----hccc------------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214        252 --------FDIYTEALK-----IDAR------------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA  306 (470)
Q Consensus       252 --------~~~~~~al~-----~~p~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (470)
                              ...+++.+.     +.+.            .|....+.++.++.-+...|+++.|..+++.|+...|+.++.
T Consensus       328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEl  407 (700)
T KOG1156|consen  328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIEL  407 (700)
T ss_pred             HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHH
Confidence                    112222210     0111            122235777788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        307 LSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +...|+++...|++++|..++..+.+++-.
T Consensus       408 y~~KaRI~kH~G~l~eAa~~l~ea~elD~a  437 (700)
T KOG1156|consen  408 YLVKARIFKHAGLLDEAAAWLDEAQELDTA  437 (700)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence            999999999999999999999999999864

>KOG2003|consensus

Probab=99.88  E-value=1.3e-19  Score=160.39  Aligned_cols=296  Identities=15%  Similarity=0.034  Sum_probs=258.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMML--GMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .-..++..++++|+++.|++.+.-.-+.+... ..+-.++...++.+  .++..|..+...++.++.-++.++.+.|.+-
T Consensus       421 lei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~  500 (840)
T KOG2003|consen  421 LEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIA  500 (840)
T ss_pred             hhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCcee
Confidence            34567889999999999999998766655433 44556777777664  4799999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      +..|++++|.+.|+.++.-+....++++.++..            +-..|+.++|+.+|-++-.+--++.+++..++.+|
T Consensus       501 f~ngd~dka~~~ykeal~ndasc~ealfniglt------------~e~~~~ldeald~f~klh~il~nn~evl~qianiy  568 (840)
T KOG2003|consen  501 FANGDLDKAAEFYKEALNNDASCTEALFNIGLT------------AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY  568 (840)
T ss_pred             eecCcHHHHHHHHHHHHcCchHHHHHHHHhccc------------HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999999887777776555554            45568888999999998888889999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK  242 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (470)
                      ..+.+..+|++++.++..+-|++|.++..+|.+|-+.|+-.+|..++-...+..|.+......+            |..|
T Consensus       569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl------------~ayy  636 (840)
T KOG2003|consen  569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWL------------AAYY  636 (840)
T ss_pred             HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHH------------HHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999888            9999


Q ss_pred             HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q psy16214        243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE  322 (470)
Q Consensus       243 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  322 (470)
                      ....-+++|+.+|+++.-+.|+    .+.-...++.|+.+.|+|.+|.+.|+..-...|.+.+.+.-+-++.-.+|-. +
T Consensus       637 idtqf~ekai~y~ekaaliqp~----~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~-d  711 (840)
T KOG2003|consen  637 IDTQFSEKAINYFEKAALIQPN----QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-D  711 (840)
T ss_pred             HhhHHHHHHHHHHHHHHhcCcc----HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch-h
Confidence            9999999999999999999998    4455677899999999999999999999999999999999988888877753 3


Q ss_pred             HHHHHHHH
Q psy16214        323 CVIDAEKI  330 (470)
Q Consensus       323 A~~~~~~a  330 (470)
                      |.++-.+.
T Consensus       712 ~key~~kl  719 (840)
T KOG2003|consen  712 AKEYADKL  719 (840)
T ss_pred             HHHHHHHH
Confidence            44444433

>TIGR00540 hemY_coli hemY protein

Probab=99.87  E-value=9.1e-19  Score=166.23  Aligned_cols=285  Identities=12%  Similarity=0.057  Sum_probs=233.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-HHHHHHHHHHH
Q psy16214         39 AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALET  117 (470)
Q Consensus        39 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~  117 (470)
                      ......|...+..|+++.|.+.+.++.+..|+....+...|.++...|+++.|..++.++.+..|++. .+.        
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~--------  156 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVE--------  156 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHH--------
Confidence            34456788888999999999999999999999888899999999999999999999999999888875 332        


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHH----HHH
Q psy16214        118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF----VRG  193 (470)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----~la  193 (470)
                          ...+...+..|+++.|+..++.+++..|+++.++..++.++...|++++|.+.+.+..+..+.++....    ...
T Consensus       157 ----~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~  232 (409)
T TIGR00540       157 ----IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE  232 (409)
T ss_pred             ----HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence                223555788999999999999999999999999999999999999999999999999987655544332    222


Q ss_pred             HHHhccCChHHHHHHHHHHHhhCC----ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch
Q psy16214        194 LCLYYDDKMDLAVNHFQLLLKLAP----DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ  269 (470)
Q Consensus       194 ~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  269 (470)
                      .-....+..+++...+..+....|    +++.....+            +..+...|++++|++.++++++..|++....
T Consensus       233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~------------a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~  300 (409)
T TIGR00540       233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIAL------------AEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS  300 (409)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHH------------HHHHHHCCChHHHHHHHHHHHhhCCCcccch
Confidence            222344555566678888888777    477777777            9999999999999999999999999875321


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHH--HHHhcCCChhHHHHHHH
Q psy16214        270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL--KALSRRCKCFHALGQYKECVIDAE--KIYKMDNSRENHNFLEE  345 (470)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~--~a~~~~p~~~~~~~l~~  345 (470)
                        ............++...+++.++++++..|+++  ..+..+|+++...|++++|.++|+  ++++..|+++....+..
T Consensus       301 --~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~  378 (409)
T TIGR00540       301 --LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAAD  378 (409)
T ss_pred             --hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHH
Confidence              112233344456888999999999999999999  889999999999999999999999  68889998776666654


Q ss_pred             HHHH
Q psy16214        346 AKRL  349 (470)
Q Consensus       346 ~~~~  349 (470)
                      +...
T Consensus       379 ll~~  382 (409)
T TIGR00540       379 AFDQ  382 (409)
T ss_pred             HHHH
Confidence            4333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1125|consensus

Probab=99.87  E-value=9.4e-21  Score=172.88  Aligned_cols=254  Identities=18%  Similarity=0.132  Sum_probs=181.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy16214         42 GNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN  121 (470)
Q Consensus        42 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  121 (470)
                      +..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.++...++-..|+..++++++++|+|.+++..|+..      
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVS------  362 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVS------  362 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHH------
Confidence            45677777788888888888888888888888888888888877777777777777777777777665333333      


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC
Q psy16214        122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK  201 (470)
Q Consensus       122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  201 (470)
                            +...|.-.+|+.++.+-+...|........  .   ..++               +...       .-......
T Consensus       363 ------ytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a--~---~~~~---------------~~~~-------~s~~~~~~  409 (579)
T KOG1125|consen  363 ------YTNEGLQNQALKMLDKWIRNKPKYVHLVSA--G---ENED---------------FENT-------KSFLDSSH  409 (579)
T ss_pred             ------HhhhhhHHHHHHHHHHHHHhCccchhcccc--C---cccc---------------ccCC-------cCCCCHHH
Confidence                  333344444555555555444432211100  0   0000               0000       00011111


Q ss_pred             hHHHHHHHHHHHhhCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH
Q psy16214        202 MDLAVNHFQLLLKLAP--DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV  279 (470)
Q Consensus       202 ~~~A~~~~~~~l~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~  279 (470)
                      +..-.+.|-.+....|  .++++...+            |.+|...++|++|+.+|+.||...|+    +..+|..||.+
T Consensus       410 l~~i~~~fLeaa~~~~~~~DpdvQ~~L------------GVLy~ls~efdraiDcf~~AL~v~Pn----d~~lWNRLGAt  473 (579)
T KOG1125|consen  410 LAHIQELFLEAARQLPTKIDPDVQSGL------------GVLYNLSGEFDRAVDCFEAALQVKPN----DYLLWNRLGAT  473 (579)
T ss_pred             HHHHHHHHHHHHHhCCCCCChhHHhhh------------HHHHhcchHHHHHHHHHHHHHhcCCc----hHHHHHHhhHH
Confidence            2234455666666677  677888888            99999999999999999999999999    56779999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-----------hhHHHHHHHHHH
Q psy16214        280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-----------RENHNFLEEAKR  348 (470)
Q Consensus       280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-----------~~~~~~l~~~~~  348 (470)
                      +..-.+.++|+..|++|+++.|.++.+++++|.+++.+|.|++|+.+|-.|+.+.+.           ..++..|+.+..
T Consensus       474 LAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als  553 (579)
T KOG1125|consen  474 LANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALS  553 (579)
T ss_pred             hcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999764           235566654444


Q ss_pred             Hh
Q psy16214        349 LL  350 (470)
Q Consensus       349 ~~  350 (470)
                      .+
T Consensus       554 ~~  555 (579)
T KOG1125|consen  554 AM  555 (579)
T ss_pred             Hc
Confidence            44

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.87  E-value=1.6e-19  Score=159.18  Aligned_cols=203  Identities=19%  Similarity=0.101  Sum_probs=183.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..+..+|..++..|++++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+..++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELD--PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAE  160 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  160 (470)
                      ...|++++|+..+.+++...  +.....+..            .+..+...|++++|+..+.+++...|.+...+..++.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~  177 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLEN------------AGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE  177 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence            99999999999999999753  233334333            3445788899999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC
Q psy16214        161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP  217 (470)
Q Consensus       161 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  217 (470)
                      ++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+....|
T Consensus       178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       178 LYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            999999999999999999999888899999999999999999999998887766544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG0550|consensus

Probab=99.87  E-value=1.6e-20  Score=164.23  Aligned_cols=327  Identities=19%  Similarity=0.231  Sum_probs=252.6

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      +.-...+|..++...+|.+|+..+..|+++.|+++..|...+.+++..|++++|....++.+++.|..+......+++..
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            45567788899999999999999999999999999999999999999999999999999999999999888877777776


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---CCChHHHHHHHH
Q psy16214        118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD---KQNPDAVFVRGL  194 (470)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~  194 (470)
                      ..+....|...++..+..                               ....|+..+++++..+   |....+....+.
T Consensus       129 a~~~~i~A~~~~~~~~~~-------------------------------~~anal~~~~~~~~s~s~~pac~~a~~lka~  177 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSKQAY-------------------------------KAANALPTLEKLAPSHSREPACFKAKLLKAE  177 (486)
T ss_pred             hhHHHHHHHHHhhhhhhh-------------------------------HHhhhhhhhhcccccccCCchhhHHHHhhhh
Confidence            666665555554421111                               1222333344433322   333456677889


Q ss_pred             HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc------
Q psy16214        195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI------  268 (470)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------  268 (470)
                      |+...+++++|+..--..+++++.+..+....            |.+++...+.+.|+.+|++++.++|++...      
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vr------------g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~  245 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVR------------GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM  245 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcccchhHHHHhc------------ccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence            99999999999999999999999999998887            999999999999999999999999986432      


Q ss_pred             --hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHH
Q psy16214        269 --NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----LKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF  342 (470)
Q Consensus       269 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  342 (470)
                        ....+-..|.-.++.|++..|.+.|..+|.++|++    +..|.+++.+..++|+..+|+...+.+++++|+ -+...
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikal  324 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKAL  324 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHH
Confidence              13566677888999999999999999999999987    677999999999999999999999999999985 34444


Q ss_pred             HHHHHHHhhc----ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC-------ccHHhhHHHHHHHHHHHHHH
Q psy16214        343 LEEAKRLLKR----SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN-------ATQAQKLEQEKLFKEVGEAY  411 (470)
Q Consensus       343 l~~~~~~~~~----~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~-------~~~~~~~~~~~~~~~i~~ay  411 (470)
                      +.++...+--    ....++-+.+....+   -+|++..+++.+.+...|-++       ...+...++.+.++.+.-++
T Consensus       325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s---~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~  401 (486)
T KOG0550|consen  325 LRRANCHLALEKWEEAVEDYEKAMQLEKD---CEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVH  401 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccc---cchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHh
Confidence            5555444322    234566666666555   467777777766665554443       11223344566666666666

>KOG1129|consensus

Probab=99.87  E-value=1.8e-20  Score=159.16  Aligned_cols=272  Identities=18%  Similarity=0.122  Sum_probs=237.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcC---Cc-------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214         13 TQYKLKQYSKALKCYSEAISVC---PN-------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++...+...|-......++.+   |.       +...-..+|.||+++|-+.+|.+.++.+++..| .++.+..++++|
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY  266 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY  266 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence            4556667777766555555432   21       234446789999999999999999999999877 688999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      .+..++..|+..+...++..|.+.......++++..            .+++++|+++|+.+++.+|.+.++...+|.-|
T Consensus       267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea------------m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y  334 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA------------MEQQEDALQLYKLVLKLHPINVEAIACIAVGY  334 (478)
T ss_pred             HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH------------HHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence            999999999999999999999999888777776444            46778888999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP---DHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      +..++.+-|+.+|+++++..-.+++.+.++|.|.+..++++-++..|++++....   .-.++|.++            |
T Consensus       335 fY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl------------g  402 (478)
T KOG1129|consen  335 FYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL------------G  402 (478)
T ss_pred             ccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc------------c
Confidence            9999999999999999999999999999999999999999999999999998654   235677777            9


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                      .+....|++..|..+|+-++..+++    ++.++.++|.+-.+.|+.++|..+++.+-...|...+..++++.+
T Consensus       403 ~vaV~iGD~nlA~rcfrlaL~~d~~----h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~  472 (478)
T KOG1129|consen  403 FVAVTIGDFNLAKRCFRLALTSDAQ----HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM  472 (478)
T ss_pred             eeEEeccchHHHHHHHHHHhccCcc----hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence            9999999999999999999999999    678899999999999999999999999999999988877776543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.86  E-value=1.3e-19  Score=163.78  Aligned_cols=222  Identities=14%  Similarity=0.071  Sum_probs=177.8

Q ss_pred             HcCChHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDN----PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA  159 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  159 (470)
                      ..+..+.++..+.+++...|-+    +..+            +..+..+...|++++|+..|+++++.+|+++.++..+|
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~------------~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  105 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLH------------YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLG  105 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHH------------HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3457788999999999754433    3334            34444577889999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .++...|++++|+..++++++++|++..++.++|.++...|++++|+..++++++.+|+++... ..            .
T Consensus       106 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~------------~  172 (296)
T PRK11189        106 IYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRA-LW------------L  172 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HH------------H
Confidence            9999999999999999999999999999999999999999999999999999999999987421 11            2


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH--HHHH----HHHHHhCCCCHHHHHHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA--IADC----TLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~----~~al~~~p~~~~~~~~la~~  313 (470)
                      ......+++++|+..+.+++...+.+.      |. .+.+...+|++..+  +..+    +..+++.|..+.+|+.+|.+
T Consensus       173 ~l~~~~~~~~~A~~~l~~~~~~~~~~~------~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~  245 (296)
T PRK11189        173 YLAESKLDPKQAKENLKQRYEKLDKEQ------WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKY  245 (296)
T ss_pred             HHHHccCCHHHHHHHHHHHHhhCCccc------cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence            234456889999999988775433211      21 35555666765443  3222    23346677788999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214        314 FHALGQYKECVIDAEKIYKMDNSR  337 (470)
Q Consensus       314 ~~~~g~~~~A~~~~~~a~~~~p~~  337 (470)
                      +..+|++++|+.+|+++++++|.+
T Consensus       246 ~~~~g~~~~A~~~~~~Al~~~~~~  269 (296)
T PRK11189        246 YLSLGDLDEAAALFKLALANNVYN  269 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCch
Confidence            999999999999999999999853

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.86  E-value=4.5e-18  Score=144.56  Aligned_cols=271  Identities=13%  Similarity=0.046  Sum_probs=235.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy16214         42 GNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN  121 (470)
Q Consensus        42 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  121 (470)
                      +..|.-++-..+.++|+..|-..++.+|...+++..||.++.+.|..+.|+..-+.+++ .|+-+.....++       .
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lA-------l  110 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLA-------L  110 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHH-------H
Confidence            45677777888999999999999999999999999999999999999999998777665 555544332222       2


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-----hHHHHHHHHHH
Q psy16214        122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN-----PDAVFVRGLCL  196 (470)
Q Consensus       122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~  196 (470)
                      .+.+..++..|-++.|...|..+.+...-...++..+..+|....+|++|++..++..++.+..     +..++.++..+
T Consensus       111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~  190 (389)
T COG2956         111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA  190 (389)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence            5667778888999999999998888777778889999999999999999999999999998876     45688899999


Q ss_pred             hccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214        197 YYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR  276 (470)
Q Consensus       197 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~l  276 (470)
                      ....+.+.|+..+.++++.+|....+...+            |.+....|+|+.|++.++.+++.+|.-   .+.+...+
T Consensus       191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~l------------G~v~~~~g~y~~AV~~~e~v~eQn~~y---l~evl~~L  255 (389)
T COG2956         191 LASSDVDRARELLKKALQADKKCVRASIIL------------GRVELAKGDYQKAVEALERVLEQNPEY---LSEVLEML  255 (389)
T ss_pred             hhhhhHHHHHHHHHHHHhhCccceehhhhh------------hHHHHhccchHHHHHHHHHHHHhChHH---HHHHHHHH
Confidence            999999999999999999999999998888            999999999999999999999988874   57788999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ..||..+|+.++.+..+.++.+..+. +.+...++..-....-.+.|..++.+-+...|+
T Consensus       256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt  314 (389)
T COG2956         256 YECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT  314 (389)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence            99999999999999999999998877 556667777777888889999999999999997

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.86  E-value=3.5e-18  Score=161.31  Aligned_cols=269  Identities=14%  Similarity=0.003  Sum_probs=220.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHH-HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY-YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      +...+......|+++.|..+|.++.+.+|++..+ ....+..+...|++++|+..++++++.+|+++.++..++.+|...
T Consensus       121 ~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~  200 (398)
T PRK10747        121 YLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            3444666699999999999999999999987543 345599999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCChHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214         86 GDAPTARSNLKALQELDPDNPAIAQESK-ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH  164 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  164 (470)
                      |++++|++.+.++.+..+.++.....+. ..+..     .........+-+.....++......|+++.+...++..+..
T Consensus       201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~-----l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~  275 (398)
T PRK10747        201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG-----LMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE  275 (398)
T ss_pred             HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-----HHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH
Confidence            9999999999999988776655433211 11111     01111222344455555555556678899999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16214        165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV  244 (470)
Q Consensus       165 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (470)
                      .|+.++|...++++++. |.++......+.+  ..++++++++.+++.++.+|+++.....+            |.++..
T Consensus       276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~l------------grl~~~  340 (398)
T PRK10747        276 CDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTL------------GQLLMK  340 (398)
T ss_pred             CCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHH------------HHHHHH
Confidence            99999999999999994 5466655555554  45999999999999999999999999888            999999


Q ss_pred             cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                      .++|++|.+.|+++++..|++     ..+..++.++..+|+.++|..+|++++.+.
T Consensus       341 ~~~~~~A~~~le~al~~~P~~-----~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        341 HGEWQEASLAFRAALKQRPDA-----YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            999999999999999999984     346789999999999999999999998764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.85  E-value=9.4e-19  Score=154.17  Aligned_cols=202  Identities=15%  Similarity=0.118  Sum_probs=183.3

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      .+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|.+..++..++.+ 
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF-  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-
Confidence            4788999999999999999999999999999999999999999999999999999999999999999998877666555 


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy16214        117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQG--VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL  194 (470)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  194 (470)
                                 +...|++++|+..+.+++...  +.....+..+|.++...|++++|...+.+++...|.++.++..+|.
T Consensus       109 -----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~  177 (234)
T TIGR02521       109 -----------LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE  177 (234)
T ss_pred             -----------HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence                       567789999999999998753  5566788889999999999999999999999999999999999999


Q ss_pred             HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                      ++...|++++|+..+++++...|.++..+...            +.++...|+.++|..+.+.+....
T Consensus       178 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       178 LYYLRGQYKDARAYLERYQQTYNQTAESLWLG------------IRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhhC
Confidence            99999999999999999999988877776665            888889999999999888776554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.85  E-value=9.6e-19  Score=142.09  Aligned_cols=208  Identities=16%  Similarity=0.052  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +.....+|..|+..|++..|...++++|+.+|++..+|..+|.+|...|+.+.|-+.|++|++++|++..++.+.|.-++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQEL--DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC  161 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  161 (470)
                      .+|++++|...|++++..  .|.....+..++.+            .++.|+.+.|..+|+++++.+|+.+.....++..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C------------al~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~  182 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLC------------ALKAGQFDQAEEYLKRALELDPQFPPALLELARL  182 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH------------HhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence            999999999999999872  23344555555544            7888999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      ++..|+|-.|..+++......+-..+.+.....+--..|+.+.+-.+=.++-+..|.+....
T Consensus       183 ~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q  244 (250)
T COG3063         183 HYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ  244 (250)
T ss_pred             HHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            99999999999999999988888888888888888999999999888888888888877643

>KOG0713|consensus

Probab=99.85  E-value=2.3e-21  Score=166.24  Aligned_cols=71  Identities=48%  Similarity=0.784  Sum_probs=65.3

Q ss_pred             ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       353 ~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++||++|||+++|+..|||+||||+|+++||||++++     +.|.++|++|+.||||||||+||+.||..++
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd-----p~A~e~F~~in~AYEVLsDpekRk~YD~~GE   83 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD-----PNANEKFKEINAAYEVLSDPEKRKHYDTYGE   83 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC-----HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence            3568999999999999999999999999999999999984     4678889999999999999999999999554

>KOG4162|consensus

Probab=99.84  E-value=7.6e-19  Score=165.31  Aligned_cols=292  Identities=20%  Similarity=0.096  Sum_probs=237.8

Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214         20 YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP-RFSKGLIRQIKCNIALGDAPTARSNLKAL   98 (470)
Q Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~   98 (470)
                      ..++++.++++++.+|+|+.+.+.++.-|...++...|+...++++++++ +++.+|..+|.++...+++.+|+.....+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a  539 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA  539 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999955 56899999999999999999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHH
Q psy16214         99 QELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK---------TYKLMKAECLAHLNRLQ  169 (470)
Q Consensus        99 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---------~~~~~~a~~~~~~~~~~  169 (470)
                      +.-.|+|.........+.            ..-++.++|+..+...+.......         ......+.......+..
T Consensus       540 l~E~~~N~~l~~~~~~i~------------~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~  607 (799)
T KOG4162|consen  540 LEEFGDNHVLMDGKIHIE------------LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT  607 (799)
T ss_pred             HHHhhhhhhhchhhhhhh------------hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence            999998776554444432            224566666666655554433221         12222333333334444


Q ss_pred             HHHHHHHHHhhc---------------------CCCC-----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        170 EAQEIANSILAT---------------------DKQN-----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       170 ~A~~~~~~~l~~---------------------~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      +|+..+..+...                     .|.+     ...|...+..+...++.++|..++.++-.++|.....+
T Consensus       608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~  687 (799)
T KOG4162|consen  608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVY  687 (799)
T ss_pred             ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHH
Confidence            555544443321                     1111     24677889999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCC
Q psy16214        224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIA--DCTLALEKDP  301 (470)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p  301 (470)
                      ...            |..+...|++.+|.+.|..++.++|+++.    ....+|.++.+.|+..-|..  .+..+++++|
T Consensus       688 ~~~------------G~~~~~~~~~~EA~~af~~Al~ldP~hv~----s~~Ala~~lle~G~~~la~~~~~L~dalr~dp  751 (799)
T KOG4162|consen  688 YLR------------GLLLEVKGQLEEAKEAFLVALALDPDHVP----SMTALAELLLELGSPRLAEKRSLLSDALRLDP  751 (799)
T ss_pred             HHh------------hHHHHHHHhhHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence            887            99999999999999999999999999654    58889999999998888877  9999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhH
Q psy16214        302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSREN  339 (470)
Q Consensus       302 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  339 (470)
                      .++++|+.+|.++..+|+.++|.++|..+++++++..+
T Consensus       752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999999999999987443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.84  E-value=3.2e-18  Score=139.10  Aligned_cols=200  Identities=18%  Similarity=0.165  Sum_probs=175.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD  200 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  200 (470)
                      .+..+..++..|++..|...++++++.+|++..++..+|.+|...|+.+.|-+.|+++++++|++.+++++.|..++.+|
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCC
Confidence            46777888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHH
Q psy16214        201 KMDLAVNHFQLLLK--LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT  278 (470)
Q Consensus       201 ~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~  278 (470)
                      ++++|...|++++.  ..|.....+.++            |.+.++.|+++.|.++|++++..+|+.+    .....++.
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~------------G~Cal~~gq~~~A~~~l~raL~~dp~~~----~~~l~~a~  181 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENL------------GLCALKAGQFDQAEEYLKRALELDPQFP----PALLELAR  181 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhh------------HHHHhhcCCchhHHHHHHHHHHhCcCCC----hHHHHHHH
Confidence            99999999999987  335555666666            9999999999999999999999999854    45788899


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        279 VLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .+++.|+|..|..+++......+-....+....++-..+|+-+.|.++=.+.....|.
T Consensus       182 ~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~  239 (250)
T COG3063         182 LHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY  239 (250)
T ss_pred             HHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999988888888888888888888999999888888888888887

>PLN02789 farnesyltranstransferase

Probab=99.84  E-value=4.3e-18  Score=153.26  Aligned_cols=219  Identities=15%  Similarity=0.056  Sum_probs=163.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG-DAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      ..++..+-.++...+++++|+..+.++|+++|.+..+|..++.++..+| ++++++..+.++++.+|++..+|...+.+.
T Consensus        37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l  116 (320)
T PLN02789         37 REAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLA  116 (320)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence            3444444444556678888888888999999998888888888888888 578888888888888888888887777664


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16214        117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL  196 (470)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  196 (470)
                      ...+.          ..+++++.+++++++.+|.+..+|..++.++...|+++++++.+.++|+.+|.+..+|..++.++
T Consensus       117 ~~l~~----------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        117 EKLGP----------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHcCc----------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence            32211          12356788888999999999999999999999999999999999999999999999999999887


Q ss_pred             hcc---CCh----HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcccC
Q psy16214        197 YYD---DKM----DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDARN  265 (470)
Q Consensus       197 ~~~---g~~----~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~  265 (470)
                      ...   |.+    ++++.+..+++..+|++..+|..+            +.++..    .++..+|++.+.+++...|. 
T Consensus       187 ~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl------------~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-  253 (320)
T PLN02789        187 TRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYL------------RGLFKDDKEALVSDPEVSSVCLEVLSKDSN-  253 (320)
T ss_pred             HhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHH------------HHHHhcCCcccccchhHHHHHHHhhcccCC-
Confidence            665   222    456777777777777777777776            555544    23445566666666665555 


Q ss_pred             ccchHHHHHHHHHHHHH
Q psy16214        266 ININSKLLHNRATVLFK  282 (470)
Q Consensus       266 ~~~~~~~~~~la~~~~~  282 (470)
                         .+.++..++.++..
T Consensus       254 ---s~~al~~l~d~~~~  267 (320)
T PLN02789        254 ---HVFALSDLLDLLCE  267 (320)
T ss_pred             ---cHHHHHHHHHHHHh
Confidence               33445555666553

>PLN02789 farnesyltranstransferase

Probab=99.84  E-value=6.5e-18  Score=152.08  Aligned_cols=202  Identities=11%  Similarity=0.024  Sum_probs=181.6

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh--H
Q psy16214         13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA--P   89 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~--~   89 (470)
                      ++...+.+++|+..+.++|.++|.+..+|..++.++..++ ++++++..++++++.+|++..+|..++.++..+|+.  +
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            4567789999999999999999999999999999999999 689999999999999999999999999999999874  7


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---C
Q psy16214         90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL---N  166 (470)
Q Consensus        90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---~  166 (470)
                      +++.++.++++.+|+|..+|...+.+..            ..+++++++..++++++.+|.+..+|..++.++...   +
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~------------~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~  193 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLR------------TLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLG  193 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHH------------HhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccc
Confidence            8899999999999999999988887744            346688999999999999999999999999998776   3


Q ss_pred             CH----HHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        167 RL----QEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       167 ~~----~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      .+    ++++.+..+++..+|++..+|..++.++..    .++..+|+..+.+++...|.++.+...+
T Consensus       194 ~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l  261 (320)
T PLN02789        194 GLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDL  261 (320)
T ss_pred             cccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHH
Confidence            33    578889999999999999999999999987    4556789999999999999998888877

>KOG0712|consensus

Probab=99.83  E-value=5.3e-21  Score=166.67  Aligned_cols=87  Identities=45%  Similarity=0.740  Sum_probs=72.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCc-CCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIM-EDSG  434 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~-~~~~  434 (470)
                      ..+|.+|+|..+|+..|||||||+++++|||||+++        +.++|++|++||||||||+||+.||+.++.. .+||
T Consensus         4 ~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~--------~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~   75 (337)
T KOG0712|consen    4 TKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD--------AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGG   75 (337)
T ss_pred             cccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccC
Confidence            578999999999999999999999999999999987        6789999999999999999999999977643 3333


Q ss_pred             CCCCCccchhHHHHHHHhcCCCC
Q psy16214        435 MGGHAGANLFEQHMFQTYFDPGC  457 (470)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~  457 (470)
                      +||.++      . |++||+.|+
T Consensus        76 ~~~g~~------~-f~~~F~~g~   91 (337)
T KOG0712|consen   76 GGGGFG------G-FSQFFGFGG   91 (337)
T ss_pred             CCCCCc------c-HHHhccCCC
Confidence            333322      2 888887544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.83  E-value=8.4e-17  Score=136.90  Aligned_cols=293  Identities=16%  Similarity=0.097  Sum_probs=238.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHH
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-----SKGLIRQIKCN   82 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~   82 (470)
                      +-.|.-++-..+.++|+..|...++.+|...++...+|..+.+.|..+.|+..-+..++ .|+.     ..+...||.-|
T Consensus        39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy  117 (389)
T COG2956          39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY  117 (389)
T ss_pred             HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence            45678888899999999999999999999999999999999999999999998776554 5654     45788999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK-----TYKLM  157 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~  157 (470)
                      +..|-++.|...|..+.....--..+...+..+|            -...+|++|++..++..+..+...     ..+..
T Consensus       118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IY------------Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE  185 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIY------------QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE  185 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHH------------HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence            9999999999999998876555566666666664            344677888888888888877653     56778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHH
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLKAKK  236 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~  236 (470)
                      +|..+....+.+.|...+.++++.+|++..+-..+|.+....|+++.|++.++.+++.+|+.. .+...+          
T Consensus       186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L----------  255 (389)
T COG2956         186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML----------  255 (389)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH----------
Confidence            888889999999999999999999999999999999999999999999999999999999864 344444          


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA  316 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  316 (470)
                        ..+|.+.|+.++.+..+.++.+..+..     .+...++..-....-.+.|..++.+-+...|+.- ..+.+-.....
T Consensus       256 --~~~Y~~lg~~~~~~~fL~~~~~~~~g~-----~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~  327 (389)
T COG2956         256 --YECYAQLGKPAEGLNFLRRAMETNTGA-----DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLA  327 (389)
T ss_pred             --HHHHHHhCCHHHHHHHHHHHHHccCCc-----cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhc
Confidence              889999999999999999999988763     3456667777777778899999999999999843 44444333332


Q ss_pred             ---hCCHHHHHHHHHHHH
Q psy16214        317 ---LGQYKECVIDAEKIY  331 (470)
Q Consensus       317 ---~g~~~~A~~~~~~a~  331 (470)
                         .|...+.+..+++.+
T Consensus       328 daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         328 DAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             cccccchhhhHHHHHHHH
Confidence               233444444444443

>KOG0495|consensus

Probab=99.83  E-value=4.6e-16  Score=143.98  Aligned_cols=307  Identities=14%  Similarity=0.038  Sum_probs=275.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCP---NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      +-+.|+..|..+-..|..-.+..+...+|.+--   +.-..|..-+..+...+-++-|...|..+++..|.....|...+
T Consensus       478 ~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~  557 (913)
T KOG0495|consen  478 NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAA  557 (913)
T ss_pred             cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHH
Confidence            345677777777777777777777777766532   34667888899999999999999999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214         80 KCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA  159 (470)
Q Consensus        80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  159 (470)
                      ..-..-|..++-...+++++...|.....|...+..            ....|+...|...+..+++.+|++.++|+...
T Consensus       558 ~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake------------~w~agdv~~ar~il~~af~~~pnseeiwlaav  625 (913)
T KOG0495|consen  558 MFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE------------KWKAGDVPAARVILDQAFEANPNSEEIWLAAV  625 (913)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH------------HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            999999999999999999999999888887544443            56669999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .+.....+++.|..++.++-...| ...+|+.-+.+...+++.++|+..++++++..|+....+..+            |
T Consensus       626 Kle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lml------------G  692 (913)
T KOG0495|consen  626 KLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLML------------G  692 (913)
T ss_pred             HHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHH------------h
Confidence            999999999999999999988665 478899999999999999999999999999999999999988            9


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      .++.+.++.+.|.+.|...++..|..+.    +|..++.+-.+.|....|...++++.-.+|.+...|+...++-++.|+
T Consensus       693 Qi~e~~~~ie~aR~aY~~G~k~cP~~ip----LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn  768 (913)
T KOG0495|consen  693 QIEEQMENIEMAREAYLQGTKKCPNSIP----LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN  768 (913)
T ss_pred             HHHHHHHHHHHHHHHHHhccccCCCCch----HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC
Confidence            9999999999999999999999999654    599999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCChh
Q psy16214        320 YKECVIDAEKIYKMDNSRE  338 (470)
Q Consensus       320 ~~~A~~~~~~a~~~~p~~~  338 (470)
                      .+.|.....+|++-.|+..
T Consensus       769 ~~~a~~lmakALQecp~sg  787 (913)
T KOG0495|consen  769 KEQAELLMAKALQECPSSG  787 (913)
T ss_pred             HHHHHHHHHHHHHhCCccc
Confidence            9999999999999999843

>KOG1156|consensus

Probab=99.81  E-value=1.9e-16  Score=146.55  Aligned_cols=329  Identities=17%  Similarity=0.061  Sum_probs=256.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      -++.+-.+|..+...|+-++|..+...++..++.+...|.-+|.++....+|++|+++|+.|+.++|++...+..++.+.
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ  119 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQ  119 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            35678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH------------------------------hcC
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF------------------------------EAN  132 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~------------------------------~~~  132 (470)
                      .++++++.....-.+.+++.|.....|...+..+...+.+..|...+                              +.|
T Consensus       120 ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g  199 (700)
T KOG1156|consen  120 IQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAG  199 (700)
T ss_pred             HHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999888888888777776666655432                              236


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH-HHHHH
Q psy16214        133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV-NHFQL  211 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~  211 (470)
                      .+++|++.+...-...-+........+.++..++++++|+..+...+..+|++...+..+-.++..-.+.-+++ ..|..
T Consensus       200 ~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~  279 (700)
T KOG1156|consen  200 SLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI  279 (700)
T ss_pred             cHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            66666666655544444555667778999999999999999999999999999887777666664222222233 33333


Q ss_pred             HHhhCCChH------------------------------------HHHHH---------HHHH-----------------
Q psy16214        212 LLKLAPDHA------------------------------------KAKET---------YKRA-----------------  229 (470)
Q Consensus       212 ~l~~~p~~~------------------------------------~~~~~---------~~~~-----------------  229 (470)
                      .-+..|...                                    .....         +.++                 
T Consensus       280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~  359 (700)
T KOG1156|consen  280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL  359 (700)
T ss_pred             HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence            222111100                                    00000         0000                 


Q ss_pred             ---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        230 ---------KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       230 ---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                               ..+......+..+...|+++.|..+++.|+...|+    ..+.+...|.++...|++++|..++..+-+++
T Consensus       360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT----liEly~~KaRI~kH~G~l~eAa~~l~ea~elD  435 (700)
T KOG1156|consen  360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT----LIELYLVKARIFKHAGLLDEAAAWLDEAQELD  435 (700)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch----HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence                     11222233477778889999999999999999999    67779999999999999999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       301 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      -.+.-+-..-|.-..+.++.++|.+...+..+..-
T Consensus       436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            77766666789999999999999999888776653

>KOG4162|consensus

Probab=99.80  E-value=3.1e-16  Score=147.97  Aligned_cols=341  Identities=16%  Similarity=0.094  Sum_probs=267.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCCHHHHHHHHH-
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD--PRFSKGLIRQIK-   80 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-   80 (470)
                      +..|-.+...+...|+|+.+.+.|++++...-.....|+.++.++...|....|+...+..+...  |+++..+...+. 
T Consensus       323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl  402 (799)
T KOG4162|consen  323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL  402 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence            45566777888889999999999999998887888999999999999999999999999999988  777776666554 


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy16214         81 CNIALGDAPTARSNLKALQELDPD-----NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYK  155 (470)
Q Consensus        81 ~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  155 (470)
                      |....+..++++.+..+++.....     .+..+..+|..|...... .-....+.....++++.++++++.+|+++.+.
T Consensus       403 c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~-a~~~seR~~~h~kslqale~av~~d~~dp~~i  481 (799)
T KOG4162|consen  403 CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQ-ANLKSERDALHKKSLQALEEAVQFDPTDPLVI  481 (799)
T ss_pred             HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhc-CCChHHHHHHHHHHHHHHHHHHhcCCCCchHH
Confidence            556789999999999999884421     122333344333222100 00011222345688999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHH------------
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA------------  222 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~------------  222 (470)
                      +.++.-|...++.+.|.....++++.+ ..++.+|..++.++...+++.+|+.....++...|++...            
T Consensus       482 f~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~  561 (799)
T KOG4162|consen  482 FYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFN  561 (799)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcc
Confidence            999999999999999999999999994 5678899999999999999999999999999887773211            


Q ss_pred             ---------------HHH-------HHHH---------------------------------------------------
Q psy16214        223 ---------------KET-------YKRA---------------------------------------------------  229 (470)
Q Consensus       223 ---------------~~~-------~~~~---------------------------------------------------  229 (470)
                                     |..       +.+.                                                   
T Consensus       562 ~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~  641 (799)
T KOG4162|consen  562 DREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPG  641 (799)
T ss_pred             cHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCC
Confidence                           110       0000                                                   


Q ss_pred             ------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214        230 ------KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY  303 (470)
Q Consensus       230 ------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (470)
                            .....+.-.+..+...++.++|..++.++-.++|.    .+..|+..|.++...|+..+|.+.|..++.++|++
T Consensus       642 ~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l----~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h  717 (799)
T KOG4162|consen  642 PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL----SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH  717 (799)
T ss_pred             CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh----hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC
Confidence                  00001112366667778888888888888888887    56789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHH--HHHHHHhcCCC-hhHHHHHHHHHHH
Q psy16214        304 LKALSRRCKCFHALGQYKECVI--DAEKIYKMDNS-RENHNFLEEAKRL  349 (470)
Q Consensus       304 ~~~~~~la~~~~~~g~~~~A~~--~~~~a~~~~p~-~~~~~~l~~~~~~  349 (470)
                      +.+...+|.++...|+..-|..  .+..+++++|. ++++..|......
T Consensus       718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~  766 (799)
T KOG4162|consen  718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK  766 (799)
T ss_pred             cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999988888  99999999998 8888888766433

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.80  E-value=4.9e-15  Score=153.12  Aligned_cols=297  Identities=11%  Similarity=0.034  Sum_probs=196.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP-RFSKGLIRQIKCNI   83 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~   83 (470)
                      .|..+-..+...|++++|..+|..+.+... .+...|..+..+|.+.|+.++|...|++..+... .+...|..+...|.
T Consensus       439 Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~  518 (1060)
T PLN03218        439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA  518 (1060)
T ss_pred             HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            444555566677777777777777766532 2456677777777777777777777777776542 25667777777777


Q ss_pred             HcCChHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCCHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQEL--DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ----GVASKTYKLM  157 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~  157 (470)
                      +.|++++|+..|......  .|+ ...+..+...            +.+.|++++|...+..+...    .|+ ...+..
T Consensus       519 k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a------------~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTyna  584 (1060)
T PLN03218        519 RAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISA------------CGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGA  584 (1060)
T ss_pred             HCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH------------HHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHH
Confidence            777777777777776543  333 3333333333            44557778888888777653    333 456666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhh--CCChHHHHHHHHHHHHHHH
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL--APDHAKAKETYKRAKLLKA  234 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~  234 (470)
                      +...|.+.|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|+..|.+....  .|+. ..+..+        
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~-~TynsL--------  655 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE-VFFSAL--------  655 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHH--------
Confidence            7777888888888888888877765 445677777888888888888888888877764  4543 233333        


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--DPNYLKALSRRCK  312 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~  312 (470)
                          ...+.+.|++++|.+++.++.+.....   ...+|..+..+|.+.|++++|+..|++....  .| +..+|..+..
T Consensus       656 ----I~a~~k~G~~eeA~~l~~eM~k~G~~p---d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~  727 (1060)
T PLN03218        656 ----VDVAGHAGDLDKAFEILQDARKQGIKL---GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALIT  727 (1060)
T ss_pred             ----HHHHHhCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence                566667777777777777766543211   2455677777777777777777777766543  33 3566777777


Q ss_pred             HHHHhCCHHHHHHHHHHHHhc
Q psy16214        313 CFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      .|.+.|++++|.+.|+++...
T Consensus       728 gy~k~G~~eeAlelf~eM~~~  748 (1060)
T PLN03218        728 ALCEGNQLPKALEVLSEMKRL  748 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHc
Confidence            777777777777777766543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.79  E-value=1e-15  Score=143.82  Aligned_cols=311  Identities=14%  Similarity=-0.050  Sum_probs=225.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      -+..+..+|..+...|+++.|...+.++....|.+   .......+.++...|++++|+..++++++.+|++..++.. +
T Consensus         5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~   83 (355)
T cd05804           5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H   83 (355)
T ss_pred             cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence            35678899999999999999999999998887754   5567788999999999999999999999999999887775 5


Q ss_pred             HHHHHcCChH----HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy16214         80 KCNIALGDAP----TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYK  155 (470)
Q Consensus        80 ~~~~~~g~~~----~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  155 (470)
                      ..+..+|++.    .+...+.......|........+            +..+...|++++|+..+++++...|++..++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~  151 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML------------AFGLEEAGQYDRAEEAARRALELNPDDAWAV  151 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence            5555555444    44444443223444444443333            3347788999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh----HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILATDKQNP----DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKL  231 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  231 (470)
                      ..+|.++...|++++|+..+.+++...|.++    ..+..+|.++...|++++|+..+++++...|...........+..
T Consensus       152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (355)
T cd05804         152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASL  231 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHH
Confidence            9999999999999999999999999887543    346689999999999999999999998766632222111000000


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHH--H-HHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Q psy16214        232 LKAKKEEGNEKFVAGKNQEAFDI--Y-TEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------  302 (470)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~A~~~--~-~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------  302 (470)
                             ...+...|....+...  . .......|.  ..........+.++...|+.++|...++........      
T Consensus       232 -------l~~~~~~g~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  302 (355)
T cd05804         232 -------LWRLELAGHVDVGDRWEDLADYAAWHFPD--HGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ  302 (355)
T ss_pred             -------HHHHHhcCCCChHHHHHHHHHHHHhhcCc--ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh
Confidence                   1122222322211111  1 111111122  112233346888999999999999999887664322      


Q ss_pred             ---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        303 ---YLKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       303 ---~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                         ...+....+.++...|++++|+..+..++.+..
T Consensus       303 ~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~  338 (355)
T cd05804         303 PARDVGLPLAEALYAFAEGNYATALELLGPVRDDLA  338 (355)
T ss_pred             hHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence               356778889999999999999999999998753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840|consensus

Probab=99.79  E-value=6.2e-17  Score=152.01  Aligned_cols=252  Identities=17%  Similarity=0.081  Sum_probs=195.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy16214         68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD  146 (470)
Q Consensus        68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  146 (470)
                      .|....+...++..|...|++++|+..++.++++-.+... -...++..     .-..|..+...+++.+|+..|++++.
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~-----l~~~a~~y~~~~k~~eAv~ly~~AL~  269 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM-----LNILALVYRSLGKYDEAVNLYEEALT  269 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH-----HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5666778888999999999999999999999987111000 00011111     11345667888999999999999987


Q ss_pred             h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC--------CChHHHHHHHHHHhccCChHHHHHHHH
Q psy16214        147 Q--------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK--------QNPDAVFVRGLCLYYDDKMDLAVNHFQ  210 (470)
Q Consensus       147 ~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~  210 (470)
                      +        +|....++.++|.+|...|++++|..++++++.+..        .-...+..++.++..++++++|+.+++
T Consensus       270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q  349 (508)
T KOG1840|consen  270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQ  349 (508)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence            6        455567899999999999999999999999987632        234568889999999999999999999


Q ss_pred             HHHhhCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc----CccchHHHHHHHHHHHH
Q psy16214        211 LLLKLAP-----DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR----NININSKLLHNRATVLF  281 (470)
Q Consensus       211 ~~l~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~~~~la~~~~  281 (470)
                      +++++.-     +++..-.         ...+.|.+++.+|++++|.+.+++++.+...    ........+.++|..+.
T Consensus       350 ~al~i~~~~~g~~~~~~a~---------~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~  420 (508)
T KOG1840|consen  350 KALKIYLDAPGEDNVNLAK---------IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE  420 (508)
T ss_pred             HHHHHHHhhccccchHHHH---------HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence            9988542     2212111         1233499999999999999999999977522    12224677889999999


Q ss_pred             HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        282 KMGKYNEAIADCTLALEK-------DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       282 ~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      +++++.+|...|.+++.+       .|+....+.+|+.+|..+|++++|+++..+++..
T Consensus       421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~  479 (508)
T KOG1840|consen  421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA  479 (508)
T ss_pred             HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            999999999999999876       4566788999999999999999999999999854

>KOG1840|consensus

Probab=99.78  E-value=7.3e-17  Score=151.55  Aligned_cols=244  Identities=16%  Similarity=0.063  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------C
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------D   68 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~   68 (470)
                      .....+|..|..+|+|+.|+..++.+++.        .|.-......+|.+|..++++.+|+..|++|+.+        +
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            35566999999999999999999999988        6666666677999999999999999999999986        4


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy16214         69 PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG  148 (470)
Q Consensus        69 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  148 (470)
                      |..+.++.+||.+|...|++++|..++++++++....                                      .....
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--------------------------------------~~~~~  321 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--------------------------------------LGASH  321 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--------------------------------------hccCh
Confidence            4556789999999999999999999999988754220                                      00112


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--------CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC---
Q psy16214        149 VASKTYKLMKAECLAHLNRLQEAQEIANSILATD--------KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP---  217 (470)
Q Consensus       149 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p---  217 (470)
                      |.-...+..++.++...+++++|+.++.+++++.        |.-+..+.++|.+|..+|++++|.+.+++++....   
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~  401 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL  401 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc
Confidence            3334456677888888888888888888877653        23356889999999999999999999999988542   


Q ss_pred             -----ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cccCccchHHHHHHHHHHHHHcCCHHH
Q psy16214        218 -----DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI----DARNININSKLLHNRATVLFKMGKYNE  288 (470)
Q Consensus       218 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~~~la~~~~~~g~~~~  288 (470)
                           ........+            |..+.+.+++.+|...|.+++.+    .|+++. ....+.+||.+|..+|++++
T Consensus       402 ~~~~~~~~~~l~~l------------a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~-~~~~~~nL~~~Y~~~g~~e~  468 (508)
T KOG1840|consen  402 GKKDYGVGKPLNQL------------AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD-VTYTYLNLAALYRAQGNYEA  468 (508)
T ss_pred             cCcChhhhHHHHHH------------HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc-hHHHHHHHHHHHHHcccHHH
Confidence                 112223333            88999999999999999998865    344444 36789999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy16214        289 AIADCTLALEK  299 (470)
Q Consensus       289 A~~~~~~al~~  299 (470)
                      |+++.+.++..
T Consensus       469 a~~~~~~~~~~  479 (508)
T KOG1840|consen  469 AEELEEKVLNA  479 (508)
T ss_pred             HHHHHHHHHHH
Confidence            99999998854

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.78  E-value=1.4e-14  Score=149.78  Aligned_cols=301  Identities=11%  Similarity=-0.026  Sum_probs=249.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--DPRFSKGLIRQI   79 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la   79 (470)
                      +...+..+-..+.+.|++++|..+|+++.+... .+...|..+...|.+.|++++|+..|....+.  .| +...|..+.
T Consensus       471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P-D~vTYnsLI  549 (1060)
T PLN03218        471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP-DRVVFNALI  549 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence            455677888899999999999999999987643 26788999999999999999999999998765  44 477899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHh----cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHH
Q psy16214         80 KCNIALGDAPTARSNLKALQE----LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG-VASKTY  154 (470)
Q Consensus        80 ~~~~~~g~~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~  154 (470)
                      ..|.+.|++++|.+.+.....    +.|+ ...+..+...            +.+.|++++|...++.+.+.. +.+...
T Consensus       550 ~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~a------------y~k~G~ldeA~elf~~M~e~gi~p~~~t  616 (1060)
T PLN03218        550 SACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKA------------CANAGQVDRAKEVYQMIHEYNIKGTPEV  616 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHH------------HHHCCCHHHHHHHHHHHHHcCCCCChHH
Confidence            999999999999999999875    3444 3333333333            567899999999999999885 456778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC-CChHHHHHHHHHHHH
Q psy16214        155 KLMKAECLAHLNRLQEAQEIANSILAT--DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA-PDHAKAKETYKRAKL  231 (470)
Q Consensus       155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~  231 (470)
                      +..+...|.+.|++++|+.+|.++...  .| +...+..+...+...|++++|...+..+.+.. +.+...+..+     
T Consensus       617 ynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL-----  690 (1060)
T PLN03218        617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL-----  690 (1060)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Confidence            888999999999999999999999876  34 46688899999999999999999999998754 2234455555     


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHH
Q psy16214        232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--DPNYLKAL  307 (470)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~  307 (470)
                             ...|.+.|++++|+++|++....  .|+     ...|..+...|.+.|++++|++.+++....  .|+ ..+|
T Consensus       691 -------I~ay~k~G~~eeA~~lf~eM~~~g~~Pd-----vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty  757 (1060)
T PLN03218        691 -------MGACSNAKNWKKALELYEDIKSIKLRPT-----VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITY  757 (1060)
T ss_pred             -------HHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHH
Confidence                   88999999999999999988654  343     567999999999999999999999998765  344 6678


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        308 SRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       308 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ..+..++.+.|++++|...+..+.+....
T Consensus       758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~  786 (1060)
T PLN03218        758 SILLVASERKDDADVGLDLLSQAKEDGIK  786 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            88889999999999999999999886543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.77  E-value=1.1e-16  Score=141.00  Aligned_cols=188  Identities=17%  Similarity=0.129  Sum_probs=156.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH---HH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA---AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK---GL   75 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~   75 (470)
                      ..++.++.+|..++..|+|++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++++.+|+++.   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            4678899999999999999999999999999999875   68899999999999999999999999999998765   79


Q ss_pred             HHHHHHHHHc--------CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         76 IRQIKCNIAL--------GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        76 ~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                      +.+|.++...        |++++|++.+++++..+|++...+..+..+.......                         
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~-------------------------  165 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRL-------------------------  165 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHH-------------------------
Confidence            9999999886        8899999999999999999987654443332211100                         


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCC
Q psy16214        148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD  218 (470)
Q Consensus       148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  218 (470)
                          ......+|.++...|++.+|+..+++++...|++   +.+++.+|.++...|++++|+.+++.+....|+
T Consensus       166 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       166 ----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence                1123467888889999999999999999887765   478899999999999999999988887766553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.77  E-value=1.4e-15  Score=154.97  Aligned_cols=306  Identities=13%  Similarity=0.036  Sum_probs=177.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--C------------
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP--R------------   70 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~------------   70 (470)
                      ..+..+...|.+.|++++|...|++...  | +...|..+...|.+.|++++|+..|++.++..+  +            
T Consensus       159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~  235 (697)
T PLN03081        159 YMMNRVLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA  235 (697)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence            3445555666666666666666666532  2 345566666666666666666666666554321  1            


Q ss_pred             ----------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         71 ----------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA  128 (470)
Q Consensus        71 ----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  128 (470)
                                            +..++..+...|.+.|++++|...|+...   +.+...|..+...+...+..+.|...
T Consensus       236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~l  312 (697)
T PLN03081        236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCL  312 (697)
T ss_pred             cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence                                  11233445556666666666666666542   23445555555554444444444333


Q ss_pred             H-----------------------hcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214        129 F-----------------------EANDYRTAMFYLDRAMDQG-VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ  184 (470)
Q Consensus       129 ~-----------------------~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  184 (470)
                      +                       ..|.+++|...+..+++.. +.+..++..+...|.+.|++++|...|+++.+   .
T Consensus       313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~  389 (697)
T PLN03081        313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---K  389 (697)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---C
Confidence            2                       2366666666666666654 44455666677777777777777777776653   2


Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLK--LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                      +..+|..+...|...|+.++|+..|++...  ..|+..... .+            ...+...|..++|.++|+...+..
T Consensus       390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~l------------l~a~~~~g~~~~a~~~f~~m~~~~  456 (697)
T PLN03081        390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL-AV------------LSACRYSGLSEQGWEIFQSMSENH  456 (697)
T ss_pred             CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH-HH------------HHHHhcCCcHHHHHHHHHHHHHhc
Confidence            455677777777777777777777777655  345543322 22            445556666666666666665432


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +-.|  ....|..+..++.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++++++.|+
T Consensus       457 g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~  526 (697)
T PLN03081        457 RIKP--RAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE  526 (697)
T ss_pred             CCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence            2222  1234566666666666666666666543 1223 2445666666666666666666666666666664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.76  E-value=2.5e-15  Score=153.23  Aligned_cols=291  Identities=12%  Similarity=-0.023  Sum_probs=230.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD-PRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~   85 (470)
                      +..+...|.+.|++++|...|++..   +.+..+|..+...|...|++++|+..|++..+.. .-+..++..+..++...
T Consensus       262 ~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~  338 (697)
T PLN03081        262 SCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL  338 (697)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence            4456677888888888888887663   3456778888888888888888888888876542 12456777788888888


Q ss_pred             CChHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214         86 GDAPTARSNLKALQELD-PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH  164 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  164 (470)
                      |++++|.+.+..+++.. +.+...+..+...            +.+.|++++|...|+++.+   .+...|..+...|.+
T Consensus       339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~------------y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~  403 (697)
T PLN03081        339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDL------------YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGN  403 (697)
T ss_pred             cchHHHHHHHHHHHHhCCCCCeeehHHHHHH------------HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHH
Confidence            88888888888887754 3344454444444            5667889999999988754   355678889999999


Q ss_pred             cCCHHHHHHHHHHHhhcCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214        165 LNRLQEAQEIANSILATDK-QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL---APDHAKAKETYKRAKLLKAKKEEGN  240 (470)
Q Consensus       165 ~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~~~  240 (470)
                      .|+.++|++.++++..... -+...+..+...+...|..++|..+|+...+.   .|+. ..+..+            ..
T Consensus       404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~-~~y~~l------------i~  470 (697)
T PLN03081        404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA-MHYACM------------IE  470 (697)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc-cchHhH------------HH
Confidence            9999999999999887532 24566778888899999999999999998764   3432 234444            88


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q psy16214        241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY  320 (470)
Q Consensus       241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  320 (470)
                      .+.+.|++++|.+.+++. ...|+     ..+|..+..++...|+++.|...+++.+.+.|++...|..++.+|...|++
T Consensus       471 ~l~r~G~~~eA~~~~~~~-~~~p~-----~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~  544 (697)
T PLN03081        471 LLGREGLLDEAYAMIRRA-PFKPT-----VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ  544 (697)
T ss_pred             HHHhcCCHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence            899999999999998764 22332     467999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcC
Q psy16214        321 KECVIDAEKIYKMD  334 (470)
Q Consensus       321 ~~A~~~~~~a~~~~  334 (470)
                      ++|.+.++...+..
T Consensus       545 ~~A~~v~~~m~~~g  558 (697)
T PLN03081        545 AEAAKVVETLKRKG  558 (697)
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999887653

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.76  E-value=1.5e-18  Score=159.65  Aligned_cols=68  Identities=50%  Similarity=0.765  Sum_probs=62.0

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .+||++|||.++++.+||++|||++|++||||+++..     .+++++|++|++||+||+||+||+.||..++
T Consensus         3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~-----~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~   70 (369)
T PRK14288          3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD-----KEAEEKFKLINEAYGVLSDEKKRALYDRYGK   70 (369)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----cHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence            6899999999999999999999999999999998741     3578899999999999999999999998543

>KOG1127|consensus

Probab=99.75  E-value=7.7e-16  Score=148.66  Aligned_cols=306  Identities=11%  Similarity=-0.010  Sum_probs=237.9

Q ss_pred             hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16214         16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL   95 (470)
Q Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~   95 (470)
                      ..++...|...|-++++++|+.+.++..+|..|...-+...|..+|.+|.++||.+..+.-..+..|....+++.|....
T Consensus       470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHH
Confidence            34557888999999999999999999999999998889999999999999999999999999999999999999998886


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16214         96 KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIA  175 (470)
Q Consensus        96 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~  175 (470)
                      ..+-+..|.....+.          ....+..+++.++...|+..++.+++.+|.+...|..+|.+|...|++..|++.+
T Consensus       550 l~~~qka~a~~~k~n----------W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF  619 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKEN----------WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVF  619 (1238)
T ss_pred             HHHhhhchHHHHHhh----------hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhh
Confidence            666665554332211          1224445778899999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-----------------------------------
Q psy16214        176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-----------------------------------  220 (470)
Q Consensus       176 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------------------------------  220 (470)
                      .++..++|.+.-..+..+.+....|+|.+|+..+...+.......                                   
T Consensus       620 ~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie  699 (1238)
T KOG1127|consen  620 TKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE  699 (1238)
T ss_pred             hhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            999999999988888888888888888888887766544221110                                   


Q ss_pred             --------------HHHHHHHHH--------------------------------------------------HHHHHHH
Q psy16214        221 --------------KAKETYKRA--------------------------------------------------KLLKAKK  236 (470)
Q Consensus       221 --------------~~~~~~~~~--------------------------------------------------~~~~~~~  236 (470)
                                    ..|...+..                                                  .....+.
T Consensus       700 ~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~Wy  779 (1238)
T KOG1127|consen  700 SFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWY  779 (1238)
T ss_pred             HHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHH
Confidence                          000000000                                                  0001111


Q ss_pred             HHHHHHHh--------cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy16214        237 EEGNEKFV--------AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS  308 (470)
Q Consensus       237 ~~~~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  308 (470)
                      +.|..|+.        ..+...|+.++.++++++.+    +...|..+|.+ ...|++.-|..+|-+++...|....+|.
T Consensus       780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an----n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~  854 (1238)
T KOG1127|consen  780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN----NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWL  854 (1238)
T ss_pred             HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc----cHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhhee
Confidence            22444433        12335788888888888888    44568888887 5668888888999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        309 RRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++|.++....+++.|...+.++..++|.
T Consensus       855 NlgvL~l~n~d~E~A~~af~~~qSLdP~  882 (1238)
T KOG1127|consen  855 NLGVLVLENQDFEHAEPAFSSVQSLDPL  882 (1238)
T ss_pred             ccceeEEecccHHHhhHHHHhhhhcCch
Confidence            9999999999999999999999999996

>KOG0553|consensus

Probab=99.75  E-value=2.2e-17  Score=139.91  Aligned_cols=113  Identities=41%  Similarity=0.532  Sum_probs=108.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.+...|+.+++.++|.+|+..|++||.++|+++..|.++|.+|.++|.++.|++.++.+|.+||.+.++|.+||.+|
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      ..+|++++|++.|+++++++|++...+..|...
T Consensus       160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIA  192 (304)
T ss_pred             HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence            999999999999999999999999776655544

>KOG1127|consensus

Probab=99.74  E-value=3.9e-16  Score=150.67  Aligned_cols=315  Identities=12%  Similarity=0.062  Sum_probs=221.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF--SKGLIRQIKC   81 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~   81 (470)
                      +-++-.+|..|...-+...|..+|.+|.+++|.++.+.-..+..|....+++.|...+-.+-+..|..  ...|..+|..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            34677888888888889999999999999999887777777777777777666666655555555433  2344456666


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH----------------------HHHHHHHhcCCHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF----------------------EGASKAFEANDYRTAMF  139 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~----------------------~~a~~~~~~~~~~~A~~  139 (470)
                      |...++...|+..|+.++..+|++...|..++..|...|.+                      ..|......|.|.+|+.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald  651 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD  651 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence            66666666666666666666666666666666654333222                      22222333466666666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHhh-------c----------------------CC
Q psy16214        140 YLDRAMDQGVASKTYKLMKAECLAHLN-------RLQEAQEIANSILA-------T----------------------DK  183 (470)
Q Consensus       140 ~~~~~l~~~p~~~~~~~~~a~~~~~~~-------~~~~A~~~~~~~l~-------~----------------------~p  183 (470)
                      .+...+............+|+++.+.-       -...|...+++.+.       .                      .|
T Consensus       652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~  731 (1238)
T KOG1127|consen  652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP  731 (1238)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcc
Confidence            666666666655566666666655431       12222222222211       0                      01


Q ss_pred             C-----------------------------------------ChHHHHHHHHHHhc--------cCChHHHHHHHHHHHh
Q psy16214        184 Q-----------------------------------------NPDAVFVRGLCLYY--------DDKMDLAVNHFQLLLK  214 (470)
Q Consensus       184 ~-----------------------------------------~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~  214 (470)
                      +                                         ++..|+++|..|++        +.+...|+.++.++++
T Consensus       732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~  811 (1238)
T KOG1127|consen  732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVS  811 (1238)
T ss_pred             cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence            1                                         02346677766654        2233578888999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16214        215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT  294 (470)
Q Consensus       215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (470)
                      ++.++...|..+            |.+ ...|++.-|..+|-+++...|.    ..-.|.|+|.++.+..+++-|...+.
T Consensus       812 L~ann~~~WnaL------------GVl-sg~gnva~aQHCfIks~~sep~----~~~~W~NlgvL~l~n~d~E~A~~af~  874 (1238)
T KOG1127|consen  812 LCANNEGLWNAL------------GVL-SGIGNVACAQHCFIKSRFSEPT----CHCQWLNLGVLVLENQDFEHAEPAFS  874 (1238)
T ss_pred             HhhccHHHHHHH------------HHh-hccchhhhhhhhhhhhhhcccc----chhheeccceeEEecccHHHhhHHHH
Confidence            998888888887            766 6668999999999999999999    45679999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       295 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      ++..++|.+...|...+.+....|+.-+++..+....++..
T Consensus       875 ~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~  915 (1238)
T KOG1127|consen  875 SVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS  915 (1238)
T ss_pred             hhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc
Confidence            99999999999999999999999999999999998555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.74  E-value=3.4e-15  Score=142.21  Aligned_cols=302  Identities=14%  Similarity=0.074  Sum_probs=214.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      ..+.+.-...++...|++++|+++++.....-++...++-.+|.+++.+|++++|...|...|+.+|++...+..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            45677888899999999999999999998888889999999999999999999999999999999999999999999888


Q ss_pred             HHcC-----ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCCHHHHH
Q psy16214         83 IALG-----DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYR-TAMFYLDRAMDQGVASKTYKL  156 (470)
Q Consensus        83 ~~~g-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~l~~~p~~~~~~~  156 (470)
                      ....     +.+.-...|+......|....+....-....             -..+. .+..++...+..  ..|.+..
T Consensus        83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~-------------g~~F~~~~~~yl~~~l~K--gvPslF~  147 (517)
T PF12569_consen   83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLE-------------GDEFKERLDEYLRPQLRK--GVPSLFS  147 (517)
T ss_pred             hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCC-------------HHHHHHHHHHHHHHHHhc--CCchHHH
Confidence            4333     4677788888888888875544222111100             01111 122233333322  2333444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhc---------------CCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214        157 MKAECLAHLNRLQEAQEIANSILAT---------------DKQN--PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH  219 (470)
Q Consensus       157 ~~a~~~~~~~~~~~A~~~~~~~l~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  219 (470)
                      .+-.+|....+..-...++...+..               .|..  ..+++.+|..|...|++++|+.++++++...|..
T Consensus       148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~  227 (517)
T PF12569_consen  148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL  227 (517)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc
Confidence            4433443322222222222222111               1111  2356788888888999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        220 AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      ++.+...            |.++-..|++.+|.+.++.+-.+++.+..+    -...+..+++.|+.++|...+..-...
T Consensus       228 ~ely~~K------------arilKh~G~~~~Aa~~~~~Ar~LD~~DRyi----NsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  228 VELYMTK------------ARILKHAGDLKEAAEAMDEARELDLADRYI----NSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             HHHHHHH------------HHHHHHCCCHHHHHHHHHHHHhCChhhHHH----HHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence            8887776            889999999999999999999888886544    444577888889999998888776554


Q ss_pred             C--CCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        300 D--PNY-------LKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       300 ~--p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      +  |..       .+.....|.+|.+.|++..|+..|..+.+...
T Consensus       292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~  336 (517)
T PF12569_consen  292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD  336 (517)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            3  211       33445578899999999999998888887754

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.74  E-value=3.9e-18  Score=158.11  Aligned_cols=88  Identities=36%  Similarity=0.638  Sum_probs=72.3

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG  434 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~  434 (470)
                      ..+||++|||.++++.+|||+|||++|++||||++.+         .++|++|++||+|||||+||+.||..+...-.++
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~---------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~   97 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD---------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGG   97 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch---------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccC
Confidence            4699999999999999999999999999999999753         3689999999999999999999998554321122


Q ss_pred             CCCCCccchhHHHHHHHhcCCC
Q psy16214        435 MGGHAGANLFEQHMFQTYFDPG  456 (470)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~  456 (470)
                      +++.|+     .++|..||++|
T Consensus        98 ~~~~d~-----~d~f~~~Fggg  114 (421)
T PTZ00037         98 EQPADA-----SDLFDLIFGGG  114 (421)
T ss_pred             CCCcch-----hhhHHHhhccc
Confidence            233455     77889988754

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.73  E-value=2.1e-15  Score=132.83  Aligned_cols=148  Identities=24%  Similarity=0.247  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH---HHHHHHHHHhcc--------CChHHHHHHHHHHHhhCCChHHHH
Q psy16214        155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPD---AVFVRGLCLYYD--------DKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      ++.+|.++...|++++|+..++++++..|+++.   +++.+|.++...        |++++|+..+++++..+|++....
T Consensus        73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302        73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence            344455555555555555555555555554443   455555555443        678888888888888888876655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214        224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY  303 (470)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (470)
                      ..+..+....                ..                 .......+|.++...|++.+|+..+++++...|+.
T Consensus       153 ~a~~~~~~~~----------------~~-----------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~  199 (235)
T TIGR03302       153 DAKKRMDYLR----------------NR-----------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDT  199 (235)
T ss_pred             HHHHHHHHHH----------------HH-----------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC
Confidence            4331111100                00                 01123456677777777777777777777775543


Q ss_pred             ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        304 ---LKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       304 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                         +.+++.+|.++..+|++++|..+++.+....|
T Consensus       200 ~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       200 PATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence               46777777777777777777777766665554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=9.4e-18  Score=154.59  Aligned_cols=96  Identities=42%  Similarity=0.732  Sum_probs=73.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cC-C-
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-ME-D-  432 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~-~-  432 (470)
                      .+||++|||.++++.++|++|||+++++||||+++.     ..+++++|++|++||+||+||+||+.||..++. .. . 
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~   78 (372)
T PRK14286          4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKG-----NKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGA   78 (372)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----chHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhcccc
Confidence            589999999999999999999999999999999864     235788999999999999999999999984432 11 1 


Q ss_pred             CC--CCCCCcc-chh--HHHHHHHhcCCC
Q psy16214        433 SG--MGGHAGA-NLF--EQHMFQTYFDPG  456 (470)
Q Consensus       433 ~~--~~~~~~~-~~~--~~~~~~~~~~~~  456 (470)
                      ++  .+++.++ +.|  .+++|+.||++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~d~f~~ffgg~  107 (372)
T PRK14286         79 GGFGQGAYTDFSDIFGDFGDIFGDFFGGG  107 (372)
T ss_pred             CCCCCCCcccccccccchhhHHHHhhCCC
Confidence            11  1111111 011  168899999754

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.73  E-value=1.1e-17  Score=154.17  Aligned_cols=94  Identities=45%  Similarity=0.733  Sum_probs=73.3

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC-
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG-  434 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~-  434 (470)
                      .+||++|||.++++.+||++|||+++++||||++++      ..++++|++|++||++|+||+||+.||..++....++ 
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~------~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~   77 (371)
T PRK14287          4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA------PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGF   77 (371)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCccccccc
Confidence            689999999999999999999999999999999764      3577899999999999999999999998554211111 


Q ss_pred             -CCCCCccchhHHHHHHHhcCCC
Q psy16214        435 -MGGHAGANLFEQHMFQTYFDPG  456 (470)
Q Consensus       435 -~~~~~~~~~~~~~~~~~~~~~~  456 (470)
                       ++|+++++.| +++|++||++|
T Consensus        78 ~~~~~~~f~~~-~d~f~~~fgg~   99 (371)
T PRK14287         78 GGGGAGDFGGF-SDIFDMFFGGG   99 (371)
T ss_pred             CCCCCccccch-HHHHHhhhccc
Confidence             1111111112 68899999754

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.72  E-value=9.4e-18  Score=154.38  Aligned_cols=67  Identities=42%  Similarity=0.654  Sum_probs=61.8

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ++||++|||.++++.++|++|||++|++||||++++      ..++++|++|++||+|||||+||+.||..+.
T Consensus         4 ~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~------~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~   70 (372)
T PRK14296          4 KDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS------PDAHDKMVEINEAADVLLDKDKRKQYDQFGH   70 (372)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence            699999999999999999999999999999999864      3578899999999999999999999999543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.72  E-value=2.3e-14  Score=134.71  Aligned_cols=284  Identities=13%  Similarity=-0.057  Sum_probs=206.5

Q ss_pred             cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214         33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA  109 (470)
Q Consensus        33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  109 (470)
                      .+|+.+.++..+|.++...|+.+.|...+.++....|.+   .+.....+.++...|++++|...++++++..|++..++
T Consensus         1 ~dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~   80 (355)
T cd05804           1 ADPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLAL   80 (355)
T ss_pred             CCCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Confidence            379999999999999999999999999999988887754   55677889999999999999999999999999998665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH
Q psy16214        110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV  189 (470)
Q Consensus       110 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  189 (470)
                      .. +..+...+        ...+....+...+.......|.....+..+|.++...|++++|+..+++++...|+++.++
T Consensus        81 ~~-~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~  151 (355)
T cd05804          81 KL-HLGAFGLG--------DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAV  151 (355)
T ss_pred             HH-hHHHHHhc--------ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHH
Confidence            43 22211111        1134444555555554466778888888899999999999999999999999999999999


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch
Q psy16214        190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ  269 (470)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  269 (470)
                      ..+|.++...|++++|+..+++++...|.++.....        .+...+.++...|++++|+..|++++...|..... 
T Consensus       152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~--------~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~-  222 (355)
T cd05804         152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH--------NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPA-  222 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH--------HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChH-
Confidence            999999999999999999999999988754322110        01122899999999999999999998766632211 


Q ss_pred             HHH--HHHHHHHHHHcCCHHHHHHH--H-HHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        270 SKL--LHNRATVLFKMGKYNEAIAD--C-TLALEKDPN--YLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       270 ~~~--~~~la~~~~~~g~~~~A~~~--~-~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      ...  ...+...+...|....+..+  . .......|.  ........+.++...|+.++|...++.+....
T Consensus       223 ~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~  294 (355)
T cd05804         223 LDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA  294 (355)
T ss_pred             HHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            111  11222333334432222222  1 111111122  22333468889999999999999998876643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376|consensus

Probab=99.72  E-value=1.1e-13  Score=127.23  Aligned_cols=334  Identities=14%  Similarity=0.103  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      ..++..-+.+...++|++|+....+++...|++..++...-.|++..++|++|+...++-....-.+ ...+..|.|.++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR   91 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence            4667777888899999999999999999999999999999999999999999996555433221111 122789999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH  164 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  164 (470)
                      ++..++|+.+++   ..++.+..+....            |..+++.++|++|+..|+.+++.+.++.+.......+-..
T Consensus        92 lnk~Dealk~~~---~~~~~~~~ll~L~------------AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~  156 (652)
T KOG2376|consen   92 LNKLDEALKTLK---GLDRLDDKLLELR------------AQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA  156 (652)
T ss_pred             cccHHHHHHHHh---cccccchHHHHHH------------HHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            999999999999   3455555454333            4448889999999999999998877776554422221111


Q ss_pred             cCCHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHhhC--------CChHHHHHHHHHHHHHHHH
Q psy16214        165 LNRLQEAQEIANSILATDKQ-NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA--------PDHAKAKETYKRAKLLKAK  235 (470)
Q Consensus       165 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~~~~~~~~~~~  235 (470)
                      .  -..+ . ..+.+...|. +.+.+++.+.++...|+|.+|++.+++++++.        .+.......+..+.     
T Consensus       157 a--~l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Ir-----  227 (652)
T KOG2376|consen  157 A--ALQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIR-----  227 (652)
T ss_pred             H--hhhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHH-----
Confidence            1  0111 1 3444444554 57799999999999999999999999995432        11122222222222     


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchH---------------------------------------------
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININS---------------------------------------------  270 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~---------------------------------------------  270 (470)
                      ..++.++..+|+.++|...|...++.+|.+....+                                             
T Consensus       228 vQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~  307 (652)
T KOG2376|consen  228 VQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ  307 (652)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            22388999999999999999999988776543211                                             


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214        271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLL  350 (470)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~  350 (470)
                      .++.+.+...+..+.-+.+.+.+...-...|...-..........+...+.+|...+....+-+|.......|..++..+
T Consensus       308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i  387 (652)
T KOG2376|consen  308 AIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI  387 (652)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence            22223333333333333332222222222232222222222222222356667777777777777665666666666666


Q ss_pred             hcccccchhhhcc
Q psy16214        351 KRSEVKDYYKILG  363 (470)
Q Consensus       351 ~~~~~~~~y~~lg  363 (470)
                      ..+......++|.
T Consensus       388 s~gn~~~A~~il~  400 (652)
T KOG2376|consen  388 SQGNPEVALEILS  400 (652)
T ss_pred             hcCCHHHHHHHHH
Confidence            6666555555554

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=3.2e-17  Score=146.18  Aligned_cols=67  Identities=55%  Similarity=0.798  Sum_probs=61.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .+||++||+..+++.++|++|||+++++||||++++      ..++++|+.|++||++|+|+++|+.||..+.
T Consensus         4 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~   70 (291)
T PRK14299          4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS------PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT   70 (291)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence            689999999999999999999999999999999864      3578899999999999999999999998443

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=3e-17  Score=150.89  Aligned_cols=96  Identities=46%  Similarity=0.804  Sum_probs=74.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCc-C-CC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIM-E-DS  433 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~-~-~~  433 (470)
                      ++||++||+...++.++|++|||+++++||||+++..     ..++++|++|++||+||+|++||..||..++.. . .+
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~   77 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-----KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGG   77 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-----HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCC
Confidence            5899999999999999999999999999999998652     357889999999999999999999999954421 1 11


Q ss_pred             C---C-CCCCccc-hh--HHHHHHHhcCCC
Q psy16214        434 G---M-GGHAGAN-LF--EQHMFQTYFDPG  456 (470)
Q Consensus       434 ~---~-~~~~~~~-~~--~~~~~~~~~~~~  456 (470)
                      +   + +|+++++ .|  .+++|+.||+++
T Consensus        78 ~~~~~~~g~~~~~~~~~~~~d~f~~~fgg~  107 (365)
T PRK14285         78 GFEGFSGGFSGFSDIFEDFGDIFDSFFTGN  107 (365)
T ss_pred             CccccCCCccccccccccHHHHHHHhhcCC
Confidence            1   1 2333321 11  267899999753

>PLN03077 Protein ECB2; Provisional

Probab=99.71  E-value=2.1e-13  Score=142.45  Aligned_cols=192  Identities=14%  Similarity=0.016  Sum_probs=126.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH------------------
Q psy16214        128 AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV------------------  189 (470)
Q Consensus       128 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~------------------  189 (470)
                      +.+.|++++|...|++..+   .+...|..+...|...|++++|+..|++++...+.+...+                  
T Consensus       434 y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~  510 (857)
T PLN03077        434 YSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE  510 (857)
T ss_pred             HHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence            3445677777777766533   2344566666677777777777777777664322222222                  


Q ss_pred             -----------------HHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16214        190 -----------------FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAF  252 (470)
Q Consensus       190 -----------------~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  252 (470)
                                       ..+...|.+.|+.++|...|+..    +.+...|..+            ...|...|+.++|+
T Consensus       511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~l------------I~~~~~~G~~~~A~  574 (857)
T PLN03077        511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNIL------------LTGYVAHGKGSMAV  574 (857)
T ss_pred             HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHH------------HHHHHHcCCHHHHH
Confidence                             33445666677777777777664    3344455555            77788888888888


Q ss_pred             HHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16214        253 DIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP--NYLKALSRRCKCFHALGQYKECVIDAE  328 (470)
Q Consensus       253 ~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~  328 (470)
                      ++|++..+.  .|+.     .++..+-.++.+.|++++|..+|+...+..+  .+...|..+..++.+.|++++|.+.++
T Consensus       575 ~lf~~M~~~g~~Pd~-----~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~  649 (857)
T PLN03077        575 ELFNRMVESGVNPDE-----VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN  649 (857)
T ss_pred             HHHHHHHHcCCCCCc-----ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            888887753  3442     3466666778888888888888888874322  235678888888888888888888888


Q ss_pred             HHHhcCCChhHHHHHH
Q psy16214        329 KIYKMDNSRENHNFLE  344 (470)
Q Consensus       329 ~a~~~~p~~~~~~~l~  344 (470)
                      +. .+.|+..++..|-
T Consensus       650 ~m-~~~pd~~~~~aLl  664 (857)
T PLN03077        650 KM-PITPDPAVWGALL  664 (857)
T ss_pred             HC-CCCCCHHHHHHHH
Confidence            75 4667755544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.71  E-value=5.8e-13  Score=117.25  Aligned_cols=299  Identities=15%  Similarity=0.080  Sum_probs=235.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-FSKGLIRQIKCN   82 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~   82 (470)
                      +......|..-+..|+|.+|.....+.-+..+.....+..-+.+--++|+++.|-.++.++-+..++ .......++.++
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            4566778888999999999999999998888887888888899999999999999999999998444 456788899999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHH--HHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK-TYK--LMKA  159 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~--~~~a  159 (470)
                      ...|+++.|.....++++..|.++.+.....++            ++..|+|.....++.++-+..--+. +..  ...+
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~------------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a  231 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRA------------YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA  231 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH------------HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence            999999999999999999999999998766666            5666777777777777666533222 111  1111


Q ss_pred             HH--HHHcCC---HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214        160 EC--LAHLNR---LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA  234 (470)
Q Consensus       160 ~~--~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  234 (470)
                      ..  +.+..+   .+.-..+++..-..-.+++.+...++.-+...|+.++|.+..+.+++..-+... ..          
T Consensus       232 ~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L-~~----------  300 (400)
T COG3071         232 WEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL-CR----------  300 (400)
T ss_pred             HHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH-HH----------
Confidence            11  112222   222223455544445567888888999999999999999999999987665441 11          


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF  314 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  314 (470)
                          -.-...-++...=++..++.++..|+++    .++..+|..+++.+.|.+|..+++.+++..|+ ...+..+|.++
T Consensus       301 ----~~~~l~~~d~~~l~k~~e~~l~~h~~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~  371 (400)
T COG3071         301 ----LIPRLRPGDPEPLIKAAEKWLKQHPEDP----LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADAL  371 (400)
T ss_pred             ----HHhhcCCCCchHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHH
Confidence                1223466888888999999999999965    56999999999999999999999999998877 67889999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcC
Q psy16214        315 HALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       315 ~~~g~~~~A~~~~~~a~~~~  334 (470)
                      .++|+..+|...++.++.+.
T Consensus       372 ~~~g~~~~A~~~r~e~L~~~  391 (400)
T COG3071         372 DQLGEPEEAEQVRREALLLT  391 (400)
T ss_pred             HHcCChHHHHHHHHHHHHHh
Confidence            99999999999999998543

>PLN03077 Protein ECB2; Provisional

Probab=99.71  E-value=8.4e-14  Score=145.49  Aligned_cols=304  Identities=11%  Similarity=-0.028  Sum_probs=186.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCchh----------------------------------HHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV--CPNVA----------------------------------AYYGNRAA   46 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~----------------------------------~~~~~~a~   46 (470)
                      ++..|..+...+.+.|++++|+.+|++....  .|+..                                  .++..+..
T Consensus       353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~  432 (857)
T PLN03077        353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE  432 (857)
T ss_pred             CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            3456778888888999999999999877553  35432                                  22333344


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214         47 CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS  126 (470)
Q Consensus        47 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  126 (470)
                      .|.+.|++++|.+.|++..+   .+...|..+...|...|+.++|+..|++.+...+.+...+..+.......+..+.+.
T Consensus       433 ~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~  509 (857)
T PLN03077        433 MYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK  509 (857)
T ss_pred             HHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence            44555555555555544321   233445555555555555555555555554322222222222222222222222221


Q ss_pred             -----------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--
Q psy16214        127 -----------------------KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT--  181 (470)
Q Consensus       127 -----------------------~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--  181 (470)
                                             .+.+.|+.++|...++..    +.+...|..+...|...|+.++|+.+|++..+.  
T Consensus       510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~  585 (857)
T PLN03077        510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV  585 (857)
T ss_pred             HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence                                   233457777777777664    445666777777777778888888877777654  


Q ss_pred             CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh---CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214        182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL---APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA  258 (470)
Q Consensus       182 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  258 (470)
                      .|+ ...+..+-..+...|..++|..+|+...+.   .|+. ..+..+            ...+.+.|++++|.+.+++.
T Consensus       586 ~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~-~~y~~l------------v~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        586 NPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL-KHYACV------------VDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             CCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch-HHHHHH------------HHHHHhCCCHHHHHHHHHHC
Confidence            233 334455555677777777787777777633   3332 233344            77778888888888887764


Q ss_pred             HhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        259 LKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                       ...|+     ..+|..+-.++...++.+.+....++++++.|+++..+..++.+|...|++++|.+..+...+.
T Consensus       652 -~~~pd-----~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~  720 (857)
T PLN03077        652 -PITPD-----PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN  720 (857)
T ss_pred             -CCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence             23443     4556666667777788888888888888888888888888888888888888888887777654

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=3.4e-17  Score=151.24  Aligned_cols=94  Identities=45%  Similarity=0.753  Sum_probs=73.7

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCC-CC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMED-SG  434 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~-~~  434 (470)
                      ++||++|||+.+++.++|++|||+++++||||++++      .+++++|++|++||+||+|+++|+.||..++.... ++
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~   76 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD------EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGG   76 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc------HHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccC
Confidence            589999999999999999999999999999999864      35788999999999999999999999996543211 11


Q ss_pred             -CCCCC-ccchhHHHHHHHhcCCC
Q psy16214        435 -MGGHA-GANLFEQHMFQTYFDPG  456 (470)
Q Consensus       435 -~~~~~-~~~~~~~~~~~~~~~~~  456 (470)
                       ++|+. +++.| +++|+.||++|
T Consensus        77 ~~~g~~~~f~~~-~d~f~~ffgg~   99 (378)
T PRK14278         77 GGGGFGGGFGGL-GDVFEAFFGGG   99 (378)
T ss_pred             CCCCCCcCcCch-hHHHHHHhCCC
Confidence             11211 11112 57899999754

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=2.9e-17  Score=152.27  Aligned_cols=66  Identities=52%  Similarity=0.770  Sum_probs=61.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG  426 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~  426 (470)
                      ++||++|||.++++.+|||+|||+++++||||+++++     +.++++|++|++||+|||||+||+.||..
T Consensus         9 ~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~   74 (392)
T PRK14279          9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD-----PAAEERFKAVSEAHDVLSDPAKRKEYDET   74 (392)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-----hHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence            6999999999999999999999999999999998752     35788999999999999999999999984

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.70  E-value=4.4e-17  Score=150.23  Aligned_cols=94  Identities=47%  Similarity=0.775  Sum_probs=73.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCC-C
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MED-S  433 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~-~  433 (470)
                      .+||++||++.+++.++|++|||+++++||||+++++     .+++++|++|++||+||+||.+|+.||..+.. ... +
T Consensus         4 ~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~   78 (373)
T PRK14301          4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-----PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNG   78 (373)
T ss_pred             CChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC-----hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCC
Confidence            6899999999999999999999999999999998752     35788999999999999999999999984432 111 1


Q ss_pred             CCCCC----CccchhHHHHHHHhcCC
Q psy16214        434 GMGGH----AGANLFEQHMFQTYFDP  455 (470)
Q Consensus       434 ~~~~~----~~~~~~~~~~~~~~~~~  455 (470)
                      +++|+    ++++.| +++|++||++
T Consensus        79 ~~~g~~~~~~~~~~f-~d~f~~~fg~  103 (373)
T PRK14301         79 GFGGFSSAEDIFSHF-SDIFGDLFGF  103 (373)
T ss_pred             CCCCcccccccccch-HHHHHHHhhc
Confidence            11222    222223 6788888863

>KOG0553|consensus

Probab=99.69  E-value=4.7e-16  Score=131.95  Aligned_cols=120  Identities=35%  Similarity=0.527  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214        231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR  310 (470)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (470)
                      ....++.+|+-+.+.++|.+|+..|.+||.++|+++    ..|+++|.+|.++|.++.|++.|+.++.++|.+.++|.++
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA----VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA----VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            445567779999999999999999999999999954    5699999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhccc
Q psy16214        311 CKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSE  354 (470)
Q Consensus       311 a~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~~  354 (470)
                      |.+|..+|++++|++.|+++++++|+ ...+..|..++..+.+..
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999998 566888988888886554

>KOG3785|consensus

Probab=99.69  E-value=2.1e-13  Score=117.77  Aligned_cols=302  Identities=16%  Similarity=0.109  Sum_probs=206.1

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHH
Q psy16214         13 TQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTA   91 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A   91 (470)
                      .++...+|..|+..++-.+..+... ...-..+|.|++.+|+|++|+..|+-+...+.-+.+.+.++|.|+.-+|.|.+|
T Consensus        31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence            4567889999999999888776543 356677899999999999999999999887777889999999999999999999


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHH------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214         92 RSNLKALQELDPDNPAIAQESKALE------------------TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT  153 (470)
Q Consensus        92 ~~~~~~~l~~~p~~~~~~~~l~~~~------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  153 (470)
                      .....++    |+++--...+-.+.                  ....++..|...+.+-.|++|++.|.+++..+|....
T Consensus       111 ~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~a  186 (557)
T KOG3785|consen  111 KSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIA  186 (557)
T ss_pred             HHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            9887765    33332111111111                  1133455666677778999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc----------------------------------
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD----------------------------------  199 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------------------------------  199 (470)
                      +...+|.||.++.-|+-+.+.+.--++..|+++-+....+..+++.                                  
T Consensus       187 lNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVv  266 (557)
T KOG3785|consen  187 LNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVV  266 (557)
T ss_pred             hHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEE
Confidence            9999999999999999999999988888888877766666555442                                  


Q ss_pred             --------------------------------CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214        200 --------------------------------DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGK  247 (470)
Q Consensus       200 --------------------------------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (470)
                                                      ++..+|+...+   .++|..+.-+..            +|.+....|+
T Consensus       267 FrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~Eyil------------Kgvv~aalGQ  331 (557)
T KOG3785|consen  267 FRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYIL------------KGVVFAALGQ  331 (557)
T ss_pred             EeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHH------------HHHHHHHhhh
Confidence                                            22222222221   122222222221            2444444444


Q ss_pred             HHHHHHHHHHH---HhhcccCccc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH
Q psy16214        248 NQEAFDIYTEA---LKIDARNINI--NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE  322 (470)
Q Consensus       248 ~~~A~~~~~~a---l~~~p~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  322 (470)
                      -....++++-|   +.+-..+...  ...-...+|.+++-..++++.+.++...-...-++....+++|.++...|++.+
T Consensus       332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e  411 (557)
T KOG3785|consen  332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE  411 (557)
T ss_pred             hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH
Confidence            32222222221   1111100000  011244567777777788888888877777777777788888888888888888


Q ss_pred             HHHHHHHHHhc
Q psy16214        323 CVIDAEKIYKM  333 (470)
Q Consensus       323 A~~~~~~a~~~  333 (470)
                      |.+.|-++-..
T Consensus       412 aEelf~~is~~  422 (557)
T KOG3785|consen  412 AEELFIRISGP  422 (557)
T ss_pred             HHHHHhhhcCh
Confidence            88887766543

>KOG1915|consensus

Probab=99.69  E-value=7.3e-12  Score=112.45  Aligned_cols=329  Identities=15%  Similarity=0.052  Sum_probs=207.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      ...|..-|.--..++++..|.+.|++|+..+..+...|...+.+-++......|...+.+|+.+-|.-...|+.....--
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            34567777777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCCHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE---------------------ANDYRTAMFYLD  142 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------~~~~~~A~~~~~  142 (470)
                      .+|+...|.+.|++-++..|+. .+|..........+..+.|...++                     .|+..-|...|.
T Consensus       153 ~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye  231 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE  231 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            9999999999999999988864 334444333333333333333222                     244555555555


Q ss_pred             HHHHh-------------------------------------CCCC--HHHHHHHHHHHHHcCCH---HHHH-----HHH
Q psy16214        143 RAMDQ-------------------------------------GVAS--KTYKLMKAECLAHLNRL---QEAQ-----EIA  175 (470)
Q Consensus       143 ~~l~~-------------------------------------~p~~--~~~~~~~a~~~~~~~~~---~~A~-----~~~  175 (470)
                      ++++.                                     -|.+  ..++-.....--+-|+.   ++++     -.|
T Consensus       232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY  311 (677)
T KOG1915|consen  232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY  311 (677)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence            55444                                     3433  11221111111222332   1222     134


Q ss_pred             HHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16214        176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIY  255 (470)
Q Consensus       176 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  255 (470)
                      ++.++.+|.+.++|+..-.+....|+.+.-.+.|++++...|....-......+.....+  .-..-+...+.+.+.+.|
T Consensus       312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY--alyeEle~ed~ertr~vy  389 (677)
T KOG1915|consen  312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY--ALYEELEAEDVERTRQVY  389 (677)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHH
Confidence            556677888888999888888888999999999999998777643322211111111100  011122345666666666


Q ss_pred             HHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        256 TEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       256 ~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      +.++.+-|......+.+|...|....++.+...|...+-.||-..|. ..++.....+-.++++++.....|++.++..|
T Consensus       390 q~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL~efDRcRkLYEkfle~~P  468 (677)
T KOG1915|consen  390 QACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQLREFDRCRKLYEKFLEFSP  468 (677)
T ss_pred             HHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence            66666666655545555655555555555555555555555555554 23333334444444555555555555555544


Q ss_pred             C
Q psy16214        336 S  336 (470)
Q Consensus       336 ~  336 (470)
                      +
T Consensus       469 e  469 (677)
T KOG1915|consen  469 E  469 (677)
T ss_pred             H
Confidence            3

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=7.7e-17  Score=148.61  Aligned_cols=94  Identities=46%  Similarity=0.803  Sum_probs=73.1

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MEDS  433 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~~  433 (470)
                      .++||++|||..+++.++|++|||+++++||||++++.     ..++++|++|++||+||+||++|+.||..++. ...+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~   77 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD-----KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGT   77 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----hHHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCC
Confidence            36899999999999999999999999999999998752     35788999999999999999999999985432 1111


Q ss_pred             C---CCCCCc-cchhHHHHHHHhcC
Q psy16214        434 G---MGGHAG-ANLFEQHMFQTYFD  454 (470)
Q Consensus       434 ~---~~~~~~-~~~~~~~~~~~~~~  454 (470)
                      +   ++|+++ ++.| +++|+.||+
T Consensus        78 ~~~~~~~~~~~~~~~-~d~f~~~fg  101 (366)
T PRK14294         78 GFSGFSGFDDIFSSF-GDIFEDFFG  101 (366)
T ss_pred             CCCCcCccccchhhh-hhhHHHhhc
Confidence            1   122221 1112 578999887

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=7.5e-17  Score=148.87  Aligned_cols=69  Identities=52%  Similarity=0.883  Sum_probs=62.2

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      ..+||++|||.++++.++|++|||+++++||||+++..    +..++++|++|++||++|+||+||+.||..+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g   71 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN----RKEAEQKFKEIQEAYEVLSDPQKRAMYDRFG   71 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc----hhHHHHHHHHHHHHHHHhcChhhHHHHhhcC
Confidence            36899999999999999999999999999999998642    2357899999999999999999999999844

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.69  E-value=1.7e-14  Score=143.39  Aligned_cols=249  Identities=13%  Similarity=0.073  Sum_probs=203.5

Q ss_pred             hcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214         32 SVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE  111 (470)
Q Consensus        32 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  111 (470)
                      ..+|.+..++..+...+...+++++|+..++.+++.+|+....++.+|.++.+.+++.+|...  .++...+.+..    
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~----   98 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK----   98 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc----
Confidence            457889999999999999999999999999999999999999999999999999998888877  66665555432    


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHH
Q psy16214        112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFV  191 (470)
Q Consensus       112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  191 (470)
                                            + .++.++...+...+.+..+++.+|.||-++|++++|...|+++++.+|+++.++.+
T Consensus        99 ----------------------~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn  155 (906)
T PRK14720         99 ----------------------W-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKK  155 (906)
T ss_pred             ----------------------h-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHH
Confidence                                  2 35555566666678888899999999999999999999999999999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc---
Q psy16214        192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI---  268 (470)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---  268 (470)
                      +|..+... +.++|+.++.+++..                          ++..+++..+.+++.+.+..+|.+.+.   
T Consensus       156 ~AY~~ae~-dL~KA~~m~~KAV~~--------------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~  208 (906)
T PRK14720        156 LATSYEEE-DKEKAITYLKKAIYR--------------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLR  208 (906)
T ss_pred             HHHHHHHh-hHHHHHHHHHHHHHH--------------------------HHhhhcchHHHHHHHHHHhcCcccchHHHH
Confidence            99999999 999999999998764                          334457777777788877777775543   


Q ss_pred             -------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh------------------
Q psy16214        269 -------------NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL------------------  317 (470)
Q Consensus       269 -------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------------  317 (470)
                                   ...++.-+=.+|...++|++++..++.+++.+|++..+...++.||...                  
T Consensus       209 i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~  288 (906)
T PRK14720        209 IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGN  288 (906)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhcccc
Confidence                         1223333447888999999999999999999999999999999999843                  


Q ss_pred             --CCHHHHHHHHHHHHhcCCC
Q psy16214        318 --GQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       318 --g~~~~A~~~~~~a~~~~p~  336 (470)
                        .++..|+..|++.+..+|.
T Consensus       289 ~~~~~~~~i~~fek~i~f~~G  309 (906)
T PRK14720        289 NRKPVKDCIADFEKNIVFDTG  309 (906)
T ss_pred             CCccHHHHHHHHHHHeeecCC
Confidence              2345666666666665554

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=6.2e-17  Score=149.83  Aligned_cols=67  Identities=51%  Similarity=0.751  Sum_probs=61.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .+||++|||.+.++.+||++|||+++++||||++++      ..++++|++|++||++|+||+||+.||..++
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~------~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   70 (380)
T PRK14276          4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE------PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA   70 (380)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence            689999999999999999999999999999999875      2467889999999999999999999998443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.68  E-value=1.9e-15  Score=120.72  Aligned_cols=116  Identities=19%  Similarity=0.206  Sum_probs=109.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      ++..++..|..+...|++++|+.+|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus        23 ~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l  102 (144)
T PRK15359         23 DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL  102 (144)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            46678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETM  118 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  118 (470)
                      ..+|++++|+..|.+++.+.|+++..+..++.+...
T Consensus       103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359        103 KMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999998777776443

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=1.1e-16  Score=148.46  Aligned_cols=68  Identities=51%  Similarity=0.866  Sum_probs=62.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .+||++|||..+++.++|++|||+++++||||+++.     ...++++|++|++||++|+||++|+.||..++
T Consensus         4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~   71 (380)
T PRK14297          4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKG-----NKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT   71 (380)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----cHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence            589999999999999999999999999999999875     23578899999999999999999999998543

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=1e-16  Score=147.86  Aligned_cols=94  Identities=43%  Similarity=0.738  Sum_probs=72.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCCC-
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MEDS-  433 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~~-  433 (470)
                      ++||++||+...++.+||++|||+++++||||++++      ..++++|++|++||++|+||+||+.||..+.. ...+ 
T Consensus         5 ~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~   78 (377)
T PRK14298          5 RDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE------PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQY   78 (377)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC------hhHHHHHHHHHHHHHHhcchHhhhhhhhcCcccccccc
Confidence            699999999999999999999999999999999864      34678999999999999999999999985432 1111 


Q ss_pred             C-CCCCC--ccchhHHHHHHHhcCCC
Q psy16214        434 G-MGGHA--GANLFEQHMFQTYFDPG  456 (470)
Q Consensus       434 ~-~~~~~--~~~~~~~~~~~~~~~~~  456 (470)
                      + .+++.  .++.| +++|++||+||
T Consensus        79 ~~~~~~~~~~~~~~-~d~f~~~Fgg~  103 (377)
T PRK14298         79 SAEDIFRGADFGGF-GDIFEMFFGGG  103 (377)
T ss_pred             CcccccccCCcCcc-hhhhHhhhcCC
Confidence            0 00010  11112 57899999754

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=1e-16  Score=148.42  Aligned_cols=65  Identities=54%  Similarity=0.850  Sum_probs=60.5

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      .+||++|||.++++.++|++|||+++++||||+++..     ..++++|++|++||+||+||++|+.||.
T Consensus         9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-----AKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-----hhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            5899999999999999999999999999999998652     3578899999999999999999999996

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.67  E-value=1.3e-16  Score=147.52  Aligned_cols=95  Identities=42%  Similarity=0.705  Sum_probs=72.5

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCc-CCC-
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIM-EDS-  433 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~-~~~-  433 (470)
                      .+||++|||..+++.++|++|||+++++||||++++      ..++++|++|++||++|+||+||+.||..++.. ..+ 
T Consensus         4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~------~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~   77 (376)
T PRK14280          4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE------EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGF   77 (376)
T ss_pred             CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCc
Confidence            689999999999999999999999999999999865      247889999999999999999999999954421 111 


Q ss_pred             CCCCC--Cccc-hh-HHHHHHHhcCCC
Q psy16214        434 GMGGH--AGAN-LF-EQHMFQTYFDPG  456 (470)
Q Consensus       434 ~~~~~--~~~~-~~-~~~~~~~~~~~~  456 (470)
                      +.+|+  ++++ .| .+++|.+||+||
T Consensus        78 ~~~~~~~~~~~~~~~~~d~f~~~fgg~  104 (376)
T PRK14280         78 GGGGFGGGDFGGGFGFEDIFSSFFGGG  104 (376)
T ss_pred             CCCCCCCCCccccccchhhHHHHhCCc
Confidence            11110  0110 01 168899999754

>KOG1130|consensus

Probab=99.66  E-value=9.4e-15  Score=128.43  Aligned_cols=284  Identities=17%  Similarity=0.132  Sum_probs=204.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSL------DPRFSKG   74 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~   74 (470)
                      -.+...|..+++.|++...+..|+.|++.-.++    ..+|..+|.+|+.+++|++|+++-..-+.+      .-..+++
T Consensus        18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs   97 (639)
T KOG1130|consen   18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS   97 (639)
T ss_pred             HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence            346678999999999999999999999987665    567889999999999999999876543332      2233566


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214         75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY  154 (470)
Q Consensus        75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  154 (470)
                      --++|.++.-+|.|++|+.+..+-+.+...       ++.      ...                           ...+
T Consensus        98 sgNLGNtlKv~G~fdeA~~cc~rhLd~are-------LgD------rv~---------------------------e~RA  137 (639)
T KOG1130|consen   98 SGNLGNTLKVKGAFDEALTCCFRHLDFARE-------LGD------RVL---------------------------ESRA  137 (639)
T ss_pred             cccccchhhhhcccchHHHHHHHHhHHHHH-------HhH------HHh---------------------------hhHH
Confidence            678999999999999999998876653211       110      000                           1122


Q ss_pred             HHHHHHHHHHcCC--------------------HHHHHHHHHHHhhcCCC------ChHHHHHHHHHHhccCChHHHHHH
Q psy16214        155 KLMKAECLAHLNR--------------------LQEAQEIANSILATDKQ------NPDAVFVRGLCLYYDDKMDLAVNH  208 (470)
Q Consensus       155 ~~~~a~~~~~~~~--------------------~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~  208 (470)
                      ++++|.+|...|+                    ++.|.++|..-+++...      ...++-++|..|+.+|+|+.|+..
T Consensus       138 lYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~  217 (639)
T KOG1130|consen  138 LYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHF  217 (639)
T ss_pred             HhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHH
Confidence            3333333333322                    23344444444433222      245778899999999999999998


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCH
Q psy16214        209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKY  286 (470)
Q Consensus       209 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~  286 (470)
                      -+.-+.+......      +.....++.+.|+++.-.|+++.|+++|+..+.+  .-.+....+...+.+|..|.-+.++
T Consensus       218 H~~RL~ia~efGD------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~  291 (639)
T KOG1130|consen  218 HKLRLEIAQEFGD------RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV  291 (639)
T ss_pred             HHHHHHHHHHhhh------HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH
Confidence            8877765443322      1222233445599999999999999999998754  3334444678889999999999999


Q ss_pred             HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        287 NEAIADCTLALEKD------PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       287 ~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      ++|+.+..+-+.+.      .....+++.+|.++-.+|..++|+.+.++.+++.
T Consensus       292 ~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s  345 (639)
T KOG1130|consen  292 QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS  345 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            99999999887663      3347889999999999999999999998888764

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.66  E-value=3.8e-15  Score=119.03  Aligned_cols=94  Identities=15%  Similarity=0.119  Sum_probs=45.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |.++...|++++|+..|++++..+|.    ...++..+|.++..+|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus        31 g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         31 GYASWQEGDYSRAVIDFSWLVMAQPW----SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            44444444444444444444444444    23334444444444444444444444444444444444444444444444


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q psy16214        319 QYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~~p~  336 (470)
                      ++++|+..|++++++.|+
T Consensus       107 ~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             CHHHHHHHHHHHHHhCCC
Confidence            444444444444444444

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=4.1e-16  Score=144.50  Aligned_cols=96  Identities=49%  Similarity=0.851  Sum_probs=73.5

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cC-C
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-ME-D  432 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~-~  432 (470)
                      ..+||++||+...++.++|++|||+++++||||+++++     ..++++|++|++||++|+|+++|..||..+.. .. .
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~   77 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-----KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQG   77 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc-----HHHHHHHHHHHHHHHHhcchhhhhHhhhccccccccC
Confidence            36899999999999999999999999999999998642     34788999999999999999999999985432 11 1


Q ss_pred             C---CCCCCCcc-chhHHHHHHHhcCCC
Q psy16214        433 S---GMGGHAGA-NLFEQHMFQTYFDPG  456 (470)
Q Consensus       433 ~---~~~~~~~~-~~~~~~~~~~~~~~~  456 (470)
                      +   |++|++++ ++| +++|++||++|
T Consensus        78 ~~~~~~~~~~~~~~~f-~~~f~~~fgg~  104 (371)
T PRK10767         78 GGGGGFGGGGGFGDIF-GDIFGDIFGGG  104 (371)
T ss_pred             CCCCCCCCccccccch-hhhhhhhccCC
Confidence            1   11121111 223 67888888653

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=4e-16  Score=145.18  Aligned_cols=68  Identities=53%  Similarity=0.863  Sum_probs=61.9

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .+||++||++..++.++|++|||+++++||||++++.     ..++++|++|++||++|+|+++|+.||..+.
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~   70 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN-----KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH   70 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            5899999999999999999999999999999998752     3577899999999999999999999998443

>KOG3785|consensus

Probab=99.65  E-value=1.8e-13  Score=118.30  Aligned_cols=299  Identities=15%  Similarity=0.114  Sum_probs=188.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------cCCC--
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVS--------------LDPR--   70 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------------~~p~--   70 (470)
                      -.-+|.+++..|+|++|+..|+-+...+.-+.+.+.++|.|++-+|.|.+|.....++-+              ++..  
T Consensus        60 ~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~  139 (557)
T KOG3785|consen   60 QLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR  139 (557)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence            344689999999999999999999887777788999999999999998888876655422              1110  


Q ss_pred             ----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc---------
Q psy16214         71 ----------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA---------  131 (470)
Q Consensus        71 ----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------  131 (470)
                                ..+-...+|.+++..-.|++|+..|.+++.-+|+.......++-++.....+..+...+..         
T Consensus       140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt  219 (557)
T KOG3785|consen  140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST  219 (557)
T ss_pred             HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence                      1123345566666666788888888888887777666555555555444333332222110         


Q ss_pred             ---------------C----------------CH-----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214        132 ---------------N----------------DY-----------------RTAMFYLDRAMDQGVASKTYKLMKAECLA  163 (470)
Q Consensus       132 ---------------~----------------~~-----------------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  163 (470)
                                     |                .|                 +.|+..+-.++..   -+++..+++..|.
T Consensus       220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~---IPEARlNL~iYyL  296 (557)
T KOG3785|consen  220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH---IPEARLNLIIYYL  296 (557)
T ss_pred             HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh---ChHhhhhheeeec
Confidence                           1                11                 2222222222222   3467888999999


Q ss_pred             HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH---HhhCCC------hHHHHHHHHHHHHHHH
Q psy16214        164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL---LKLAPD------HAKAKETYKRAKLLKA  234 (470)
Q Consensus       164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~---l~~~p~------~~~~~~~~~~~~~~~~  234 (470)
                      ..++.++|+.+++.   ++|..|.-+...|.+....|+--...++++-+   +.+-..      ........        
T Consensus       297 ~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm--------  365 (557)
T KOG3785|consen  297 NQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM--------  365 (557)
T ss_pred             ccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH--------
Confidence            99999999998875   68999999999999999888765544444433   222211      11222222        


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD-PNYLKALSRRCKC  313 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  313 (470)
                          +..++-..++++.+.++...-....++.    ...+++|.++...|++.+|.+.|-+.-... .+.......+|+|
T Consensus       366 ----As~fFL~~qFddVl~YlnSi~sYF~NdD----~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArC  437 (557)
T KOG3785|consen  366 ----ASYFFLSFQFDDVLTYLNSIESYFTNDD----DFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARC  437 (557)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhcCcc----hhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHH
Confidence                5556666666666666655444433322    236667777777777777777665544333 2223344556777


Q ss_pred             HHHhCCHHHHHHHH
Q psy16214        314 FHALGQYKECVIDA  327 (470)
Q Consensus       314 ~~~~g~~~~A~~~~  327 (470)
                      |...+..+.|...+
T Consensus       438 yi~nkkP~lAW~~~  451 (557)
T KOG3785|consen  438 YIRNKKPQLAWDMM  451 (557)
T ss_pred             HHhcCCchHHHHHH
Confidence            77777776665544

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.65  E-value=3.6e-16  Score=145.36  Aligned_cols=67  Identities=58%  Similarity=0.877  Sum_probs=61.5

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      +||++|||..+++.++|++|||+++++||||++++     ...++++|+.|++||++|+|++||+.||..++
T Consensus         2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~-----~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   68 (391)
T PRK14284          2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG-----DAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK   68 (391)
T ss_pred             CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-----chHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence            79999999999999999999999999999999875     23578899999999999999999999998543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.64  E-value=8.3e-14  Score=117.44  Aligned_cols=152  Identities=16%  Similarity=0.170  Sum_probs=127.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE  237 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  237 (470)
                      -+-.|+..|+++......+...  +|..         -+...++.++++..++++++.+|++...|..+           
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~L-----------   79 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALL-----------   79 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHH-----------
Confidence            3456778888877654443221  1211         11236778899999999999999999999998           


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL-FKMGK--YNEAIADCTLALEKDPNYLKALSRRCKCF  314 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~  314 (470)
                       |.++...|++++|+..|++++++.|++    ..++..+|.++ ...|+  +++|...++++++.+|+++.++..+|.++
T Consensus        80 -g~~~~~~g~~~~A~~a~~~Al~l~P~~----~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~  154 (198)
T PRK10370         80 -GEYYLWRNDYDNALLAYRQALQLRGEN----AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDA  154 (198)
T ss_pred             -HHHHHHCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence             999999999999999999999999994    56699999975 67777  59999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCC
Q psy16214        315 HALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       315 ~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ...|++++|+..|++++++.|.
T Consensus       155 ~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        155 FMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999987

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=7e-16  Score=143.20  Aligned_cols=67  Identities=55%  Similarity=0.865  Sum_probs=61.7

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      .+||++|||..+++.++|++|||+++++||||++++.     ..++++|++|++||+||+|++||+.||..+
T Consensus         5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~-----~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G   71 (386)
T PRK14277          5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD-----KEAEQKFKEINEAYEILSDPQKRAQYDQFG   71 (386)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc-----hHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence            6999999999999999999999999999999998752     357889999999999999999999999844

>KOG1915|consensus

Probab=99.63  E-value=1.8e-10  Score=103.63  Aligned_cols=326  Identities=15%  Similarity=0.107  Sum_probs=234.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR--------------   70 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------------   70 (470)
                      ..|..-+..-++......|..++++|+.+-|.-...|+.....--.+|+..-|.+.|++-++..|+              
T Consensus       108 tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRy  187 (677)
T KOG1915|consen  108 TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRY  187 (677)
T ss_pred             hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence            345666777778888888888888888888888888888888888888888888888888887775              


Q ss_pred             ------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHHHHHHHH
Q psy16214         71 ------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA---IAQESKALETMAKNFEGASKAF  129 (470)
Q Consensus        71 ------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~~l~~~~~~~~~~~~a~~~~  129 (470)
                                        ....|...|..-...|+...|..+|.++++.-.++..   .....+.....++.++.|...+
T Consensus       188 keieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iy  267 (677)
T KOG1915|consen  188 KEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIY  267 (677)
T ss_pred             hHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              2345555566666667777777777777665444332   2222233333333333333322


Q ss_pred             h-------c-----------------CC---HHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214        130 E-------A-----------------ND---YRTAMF-----YLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS  177 (470)
Q Consensus       130 ~-------~-----------------~~---~~~A~~-----~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  177 (470)
                      +       .                 |+   .++++.     .|+..++.+|.+-+.|+....+....|+.+.-.+.|++
T Consensus       268 kyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yEr  347 (677)
T KOG1915|consen  268 KYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYER  347 (677)
T ss_pred             HHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            1       1                 11   222222     45667788999999999999999999999999999999


Q ss_pred             HhhcCCCChH-------HHHHHHHHH---hccCChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214        178 ILATDKQNPD-------AVFVRGLCL---YYDDKMDLAVNHFQLLLKLAPDH----AKAKETYKRAKLLKAKKEEGNEKF  243 (470)
Q Consensus       178 ~l~~~p~~~~-------~~~~la~~~---~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~~~~~~~  243 (470)
                      ++...|...+       ++..+-.++   +...+.+.+...|+.++++-|..    ...|..+            +....
T Consensus       348 AIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmy------------A~feI  415 (677)
T KOG1915|consen  348 AIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMY------------AQFEI  415 (677)
T ss_pred             HHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHH------------HHHHH
Confidence            9998776433       222222222   45789999999999999998864    4455555            77778


Q ss_pred             hcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16214        244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKEC  323 (470)
Q Consensus       244 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  323 (470)
                      ++.+...|.+.+-.|+-.+|.+.     ++-....+-.++++++.+...|++-+...|.+..+|...|..-..+|+.+.|
T Consensus       416 Rq~~l~~ARkiLG~AIG~cPK~K-----lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa  490 (677)
T KOG1915|consen  416 RQLNLTGARKILGNAIGKCPKDK-----LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA  490 (677)
T ss_pred             HHcccHHHHHHHHHHhccCCchh-----HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence            88888999999999999988853     4555566677888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHH
Q psy16214        324 VIDAEKIYKMDNSRENHNFLEEAKR  348 (470)
Q Consensus       324 ~~~~~~a~~~~p~~~~~~~l~~~~~  348 (470)
                      ...|+-|++. |.-+..+.|-++..
T Consensus       491 RaifelAi~q-p~ldmpellwkaYI  514 (677)
T KOG1915|consen  491 RAIFELAISQ-PALDMPELLWKAYI  514 (677)
T ss_pred             HHHHHHHhcC-cccccHHHHHHHhh
Confidence            9999888864 44455555544444

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=1.1e-15  Score=141.51  Aligned_cols=90  Identities=42%  Similarity=0.722  Sum_probs=73.0

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCC--
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDS--  433 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~--  433 (470)
                      .+||++||+...++.++|++|||+++++||||++.+      ..++++|+.|++||++|+||.+|+.||..+.....+  
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~   75 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE------KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMP   75 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCccccccc
Confidence            489999999999999999999999999999999864      357889999999999999999999999854321100  


Q ss_pred             C---CC--CCCccchhHHHHHHHhcCCC
Q psy16214        434 G---MG--GHAGANLFEQHMFQTYFDPG  456 (470)
Q Consensus       434 ~---~~--~~~~~~~~~~~~~~~~~~~~  456 (470)
                      +   .+  ++||     .++|++||+++
T Consensus        76 ~~~~~~~~~~d~-----~d~f~~~fg~~   98 (371)
T PRK14292         76 GGDPFGGMGFDP-----MDIFEQLFGGA   98 (371)
T ss_pred             CCcccCccCCCh-----HHHHHHhhCCC
Confidence            1   11  2345     68999999754

>KOG2376|consensus

Probab=99.63  E-value=1.2e-11  Score=113.97  Aligned_cols=323  Identities=15%  Similarity=0.077  Sum_probs=208.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-----------------   70 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----------------   70 (470)
                      ++++.+.|+.+..++|+..++   ..++.+..+....|.+++++|+|++|+..|+..++.+.+                 
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            789999999999999999999   456666778899999999999999999999988654221                 


Q ss_pred             --------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         71 --------------FSKGLIRQIKCNIALGDAPTARSNLKALQEL--------DPDNPAIAQESKALETMAKNFEGASKA  128 (470)
Q Consensus        71 --------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~a~~~  128 (470)
                                    ..+.+++.|.++...|+|.+|++.+++++.+        +.+..+....+..+     ..+.|-.+
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~I-----rvQlayVl  234 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPI-----RVQLAYVL  234 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH-----HHHHHHHH
Confidence                          3557889999999999999999999999432        22223444444444     35556667


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHH-------------------------------------------------HHH
Q psy16214        129 FEANDYRTAMFYLDRAMDQGVASKTYKL-------------------------------------------------MKA  159 (470)
Q Consensus       129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~-------------------------------------------------~~a  159 (470)
                      ...|+.++|...|...++.+|.+.....                                                 +.+
T Consensus       235 Q~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~  314 (652)
T KOG2376|consen  235 QLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA  314 (652)
T ss_pred             HHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999988888776653322                                                 122


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~  238 (470)
                      .+.+..+.-+.+.+.....-...|...-..........+...+.+|+..+..+...+|... .+....            
T Consensus       315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~------------  382 (652)
T KOG2376|consen  315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLR------------  382 (652)
T ss_pred             HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHH------------
Confidence            2222222222222222222222222221122222222223367777777777777777763 233333            


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhccc---CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDAR---NININSKLLHNRATVLFKMGKYNEAIADCTLALEK-------DPNYLKALS  308 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~  308 (470)
                      +.+.+.+|+++.|++.+...+.....   +....+.+-..+-..+.+.++...|...+.+++.-       .+.....+.
T Consensus       383 aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~  462 (652)
T KOG2376|consen  383 AQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR  462 (652)
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence            88889999999999999944311110   00112233444555566666655565555555543       333344566


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214        309 RRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL  350 (470)
Q Consensus       309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~  350 (470)
                      ..+....+.|+-++|...+++.++.+|+ .++...+--+...+
T Consensus       463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  463 EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence            6777888889999999999999999986 55555554444444

>KOG3060|consensus

Probab=99.62  E-value=6.3e-13  Score=109.85  Aligned_cols=173  Identities=21%  Similarity=0.129  Sum_probs=116.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214        127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  206 (470)
                      ..+..++..-|..+++++....|.+..+....|..+...|++++|+++|+..+..+|.+..++-..-.+...+|+.-+|+
T Consensus        61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aI  140 (289)
T KOG3060|consen   61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAI  140 (289)
T ss_pred             HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHH
Confidence            34555666667777777666667777777777777777777777777777777777777666666666666667767777


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC--
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG--  284 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g--  284 (470)
                      +.+...++..+.+.++|..+            +.+|+..|+|++|.-++++.+-+.|.++    ..+..+|.+++-+|  
T Consensus       141 k~ln~YL~~F~~D~EAW~eL------------aeiY~~~~~f~kA~fClEE~ll~~P~n~----l~f~rlae~~Yt~gg~  204 (289)
T KOG3060|consen  141 KELNEYLDKFMNDQEAWHEL------------AEIYLSEGDFEKAAFCLEELLLIQPFNP----LYFQRLAEVLYTQGGA  204 (289)
T ss_pred             HHHHHHHHHhcCcHHHHHHH------------HHHHHhHhHHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhH
Confidence            77777777777777777666            7777777777777777777777777633    34566666666555  


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214        285 -KYNEAIADCTLALEKDPNYLKALSRRCKCFH  315 (470)
Q Consensus       285 -~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  315 (470)
                       ++.-|.++|.++++++|.+..+++.+-.|-.
T Consensus       205 eN~~~arkyy~~alkl~~~~~ral~GI~lc~~  236 (289)
T KOG3060|consen  205 ENLELARKYYERALKLNPKNLRALFGIYLCGS  236 (289)
T ss_pred             HHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence             3455667777777777766666655544443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.61  E-value=1.7e-12  Score=123.96  Aligned_cols=272  Identities=15%  Similarity=0.073  Sum_probs=203.9

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      +.+++.....++...|++++|++.++.....-++....+...|.++..+|++++|...|..++..+|+|...+..+..+.
T Consensus         3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            45778888999999999999999999988888888999999999999999999999999999999999999888777764


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQE-AQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~-A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                      ....       -+.....+.....|+......|....+...- ..+..-..+.. +..++...+.  ..-|.+...+-.+
T Consensus        83 g~~~-------~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~~~~g~~F~~~~~~yl~~~l~--KgvPslF~~lk~L  152 (517)
T PF12569_consen   83 GLQL-------QLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LDFLEGDEFKERLDEYLRPQLR--KGVPSLFSNLKPL  152 (517)
T ss_pred             hhhc-------ccccccHHHHHHHHHHHHHhCccccchhHhh-cccCCHHHHHHHHHHHHHHHHh--cCCchHHHHHHHH
Confidence            3322       1222356677888888888888765544321 11112223333 3334444443  3455666666666


Q ss_pred             HhccCChHHHHHHHHHHHh---hC------------CChHH--HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214        196 LYYDDKMDLAVNHFQLLLK---LA------------PDHAK--AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA  258 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~l~---~~------------p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  258 (470)
                      |....+..-....+.....   ..            |....  ++..+            +..|-..|++++|+++++++
T Consensus       153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l------------Aqhyd~~g~~~~Al~~Id~a  220 (517)
T PF12569_consen  153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL------------AQHYDYLGDYEKALEYIDKA  220 (517)
T ss_pred             HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH------------HHHHHHhCCHHHHHHHHHHH
Confidence            5533333222222222221   11            11111  22333            88999999999999999999


Q ss_pred             HhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        259 LKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      |...|+    ...+|...|.++...|++.+|.+.++.+-.+++.+-.+-...+..+++.|+.++|...+.....-+
T Consensus       221 I~htPt----~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  221 IEHTPT----LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HhcCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            999999    566799999999999999999999999999999999999999999999999999999999887665

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=1.6e-15  Score=140.57  Aligned_cols=67  Identities=55%  Similarity=0.856  Sum_probs=61.6

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ++||++||+...++.++|++|||+++++||||++++      ..++++|+.|++||++|+||+||+.||....
T Consensus         3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~   69 (382)
T PRK14291          3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN------PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH   69 (382)
T ss_pred             CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence            689999999999999999999999999999999875      3467899999999999999999999998543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.61  E-value=1.2e-13  Score=136.68  Aligned_cols=182  Identities=9%  Similarity=-0.045  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      .+++.-+.......|.+++++.++|.+....|.+++|...++.++++.|++..++..+            +.++.+.+++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~------------a~~L~~~~~~  136 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM------------LRGVKRQQGI  136 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH------------HHHHHHhccH
Confidence            3444455555667899999999999999999999999999999999999999999998            9999999999


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE  328 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  328 (470)
                      ++|+..+++++..+|+    ++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+
T Consensus       137 eeA~~~~~~~l~~~p~----~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~  212 (694)
T PRK15179        137 EAGRAEIELYFSGGSS----SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQ  212 (694)
T ss_pred             HHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999    567799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCC--hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHH
Q psy16214        329 KIYKMDNS--RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDD  372 (470)
Q Consensus       329 ~a~~~~p~--~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~e  372 (470)
                      ++++...+  ....+.+.+.      ...-.+|+.|+.....-...
T Consensus       213 ~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  252 (694)
T PRK15179        213 AGLDAIGDGARKLTRRLVDL------NADLAALRRLGVEGDGRDVP  252 (694)
T ss_pred             HHHHhhCcchHHHHHHHHHH------HHHHHHHHHcCcccccCCCc
Confidence            99998765  2222333222      22235677777665444333

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=1.2e-15  Score=141.34  Aligned_cols=67  Identities=51%  Similarity=0.778  Sum_probs=61.7

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      .++||++||+..+++.+||++|||+++++||||++++      ..++++|++|++||++|+|++||+.||..+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G   70 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE------EGAEEKFKEISEAYAVLSDDEKRQRYDQFG   70 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence            4699999999999999999999999999999999764      357889999999999999999999999843

>KOG0718|consensus

Probab=99.60  E-value=1.3e-15  Score=135.33  Aligned_cols=72  Identities=40%  Similarity=0.713  Sum_probs=67.6

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ..++|.+|++++++++++|++|||++++.+||||+.+  ++.|+.||++|..|.+||||||||.+|..||.-+.
T Consensus         8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~d--pd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~   79 (546)
T KOG0718|consen    8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTD--PDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGE   79 (546)
T ss_pred             hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCC--hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhh
Confidence            3589999999999999999999999999999999988  78899999999999999999999999999998443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.60  E-value=2.7e-13  Score=114.30  Aligned_cols=125  Identities=12%  Similarity=0.148  Sum_probs=100.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH-hccCC--hHHHHH
Q psy16214        131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL-YYDDK--MDLAVN  207 (470)
Q Consensus       131 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~--~~~A~~  207 (470)
                      .++.++++..+.+++..+|++...|..+|.++...|++++|+..|++++++.|+++.++..+|.++ ...|+  +++|+.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            355667777788888888888888888888888888888888888888888888888888888864 56666  488888


Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214        208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN  267 (470)
Q Consensus       208 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  267 (470)
                      .++++++.+|++..++..+            |..++..|++++|+.+++++++..|.+..
T Consensus       132 ~l~~al~~dP~~~~al~~L------------A~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLL------------ASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            8888888888888888777            88888888888888888888888776543

>KOG0719|consensus

Probab=99.60  E-value=1.8e-15  Score=121.95  Aligned_cols=77  Identities=43%  Similarity=0.731  Sum_probs=70.1

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGM  435 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~~  435 (470)
                      .+.|.+|||.+++++.+|++||+++++.||||+.+   .+++.++..+|+.++.+|.||||+++|+.||+-+-+++-+|+
T Consensus        14 ~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~---eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd~~~d   90 (264)
T KOG0719|consen   14 KDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH---EEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDDESGD   90 (264)
T ss_pred             cCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch---hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCCccch
Confidence            48899999999999999999999999999999986   477888999999999999999999999999998877754443

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=2.9e-15  Score=138.20  Aligned_cols=95  Identities=44%  Similarity=0.700  Sum_probs=72.7

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCc-CCC-
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIM-EDS-  433 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~-~~~-  433 (470)
                      .+||++|||..+++..||++|||+++++||||++++.    ...++++|+.|++||++|+|+.+|..||..+... ..+ 
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~----~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~   78 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN----KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGG   78 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCC
Confidence            5899999999999999999999999999999997642    3358899999999999999999999999954421 111 


Q ss_pred             -CCC--CCCccchhHHHHHHHhcCC
Q psy16214        434 -GMG--GHAGANLFEQHMFQTYFDP  455 (470)
Q Consensus       434 -~~~--~~~~~~~~~~~~~~~~~~~  455 (470)
                       +++  +++.++-| .++|..||++
T Consensus        79 ~~~~~~~~~~~~~~-~d~f~~~fg~  102 (365)
T PRK14290         79 SNFNWDNFTHFSDI-NDIFNQIFGG  102 (365)
T ss_pred             CCccccccccccch-hHHHHHHhcC
Confidence             111  11100111 6789998875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.59  E-value=8.2e-14  Score=124.16  Aligned_cols=267  Identities=21%  Similarity=0.216  Sum_probs=173.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q psy16214         12 NTQYKLKQYSKALKCYSEAISVCPN-VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPT   90 (470)
Q Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~   90 (470)
                      ..+|..|+|..++..++ ....+|. .......+..+++.+|+++..+..+...   .+....+...++..+....+-+.
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~---~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS---SSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT---SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC---CChhHHHHHHHHHHHhCccchHH
Confidence            45566777777776666 2233332 3445666777777777777655444321   12233444444444433333344


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy16214         91 ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQE  170 (470)
Q Consensus        91 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~  170 (470)
                      ++..++..+....                                            .+.++.+....|.++...|++++
T Consensus        85 ~l~~l~~~~~~~~--------------------------------------------~~~~~~~~~~~A~i~~~~~~~~~  120 (290)
T PF04733_consen   85 ALEELKELLADQA--------------------------------------------GESNEIVQLLAATILFHEGDYEE  120 (290)
T ss_dssp             HHHHHHHCCCTS-----------------------------------------------CHHHHHHHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHHHhcc--------------------------------------------ccccHHHHHHHHHHHHHcCCHHH
Confidence            4443333322111                                            01223344556677777888888


Q ss_pred             HHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--CH
Q psy16214        171 AQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG--KN  248 (470)
Q Consensus       171 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  248 (470)
                      |++.+.+.     .+.+.......++...++++.|.+.++..-+.+.+........            +.+.+..|  ++
T Consensus       121 AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~------------awv~l~~g~e~~  183 (290)
T PF04733_consen  121 ALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAE------------AWVNLATGGEKY  183 (290)
T ss_dssp             HHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHH------------HHHHHHHTTTCC
T ss_pred             HHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHH------------HHHHHHhCchhH
Confidence            88877654     5677778888888899999999999988888877765544433            55555544  68


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-HHHHHHH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY-KECVIDA  327 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~  327 (470)
                      .+|.-.|++.....+.    .+.++..++.+++.+|+|++|...+.+++..+|+++.++.+++.+...+|+. +.+.+++
T Consensus       184 ~~A~y~f~El~~~~~~----t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  184 QDAFYIFEELSDKFGS----TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             CHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHhccCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            8999999997766655    4566888999999999999999999999999999999999999999999988 6677788


Q ss_pred             HHHHhcCCChhHHHHHHHHH
Q psy16214        328 EKIYKMDNSRENHNFLEEAK  347 (470)
Q Consensus       328 ~~a~~~~p~~~~~~~l~~~~  347 (470)
                      .++...+|+......+....
T Consensus       260 ~qL~~~~p~h~~~~~~~~~~  279 (290)
T PF04733_consen  260 SQLKQSNPNHPLVKDLAEKE  279 (290)
T ss_dssp             HHCHHHTTTSHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHH
Confidence            88888888866555554433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.59  E-value=3.2e-15  Score=137.96  Aligned_cols=93  Identities=49%  Similarity=0.829  Sum_probs=71.5

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCCC-C
Q psy16214        357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MEDS-G  434 (470)
Q Consensus       357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~~-~  434 (470)
                      +||++||+...++.++|++|||+++++||||++++      ..++++|+.|++||++|+|+.+|..||..+.. ...+ +
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~   74 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD------KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGG   74 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCc
Confidence            58999999999999999999999999999999863      34678999999999999999999999984332 2111 1


Q ss_pred             --CCCCCcc-----chhHHHHHHHhcCCC
Q psy16214        435 --MGGHAGA-----NLFEQHMFQTYFDPG  456 (470)
Q Consensus       435 --~~~~~~~-----~~~~~~~~~~~~~~~  456 (470)
                        .++++++     +.| +++|.+||+++
T Consensus        75 ~~~~~~~~~~~~~~~~~-~~~f~~~fg~~  102 (354)
T TIGR02349        75 GGGGGFNGFDIGFFGDF-GDIFGDFFGGG  102 (354)
T ss_pred             CCCCCcCCccccCcCch-hhhHHHHhccC
Confidence              1122221     112 57899999753

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.59  E-value=3.3e-15  Score=137.98  Aligned_cols=66  Identities=52%  Similarity=0.766  Sum_probs=60.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      .+||++|||..+++.++|++|||+++++||||++..      ..++++|++|++||++|+|+.+|+.||..+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~------~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G   68 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA------KDAEKKFKEINAAYDVLKDEQKRAAYDRFG   68 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------cCHHHHHHHHHHHHHHhhhHhHhhHHHhcc
Confidence            589999999999999999999999999999999764      236779999999999999999999999944

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.58  E-value=1e-11  Score=131.49  Aligned_cols=321  Identities=15%  Similarity=0.031  Sum_probs=231.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----   71 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----   71 (470)
                      ......+..++..|++++|...+..+....+.         .......++.++...|++++|...+++++...|..    
T Consensus       410 ~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  489 (903)
T PRK04841        410 RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS  489 (903)
T ss_pred             chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence            34456788888999999999999988654221         23455667888899999999999999999864442    


Q ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         72 -SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        72 -~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                       ..+...+|.++...|++++|...+.+++............ ..     .....+..++..|+++.|...+.+++.....
T Consensus       490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~-~~-----~~~~la~~~~~~G~~~~A~~~~~~al~~~~~  563 (903)
T PRK04841        490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA-LW-----SLLQQSEILFAQGFLQAAYETQEKAFQLIEE  563 (903)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH-HH-----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             2356778899999999999999999998764432221111 11     1234456678899999999999998876221


Q ss_pred             --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-----ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC
Q psy16214        151 --------SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ-----NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP  217 (470)
Q Consensus       151 --------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  217 (470)
                              ....+..+|.++...|++++|...+.+++.....     ....+..++.++...|++++|...+.++..+.+
T Consensus       564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence                    1234557889999999999999999998775332     244566789999999999999999999977543


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214        218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (470)
                      .............     ......+...|+.+.|...+.......+.........+..++.++...|++++|+..+++++
T Consensus       644 ~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al  718 (903)
T PRK04841        644 NGRYHSDWIANAD-----KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN  718 (903)
T ss_pred             cccccHhHhhHHH-----HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3211000000000     00134455678999999998776653322221122335678999999999999999999998


Q ss_pred             HhC------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        298 EKD------PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       298 ~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ...      +....++..+|.++...|+.++|...+.+++++...
T Consensus       719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        719 ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            862      223568889999999999999999999999998865

>KOG4340|consensus

Probab=99.58  E-value=2.8e-12  Score=108.49  Aligned_cols=297  Identities=13%  Similarity=0.143  Sum_probs=226.8

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      .+.+..+|..||+++..-.+.+|.+-..+..+|.||+...+|..|..+|++.-.+.|......+..|..+++.+.+..|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            34778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy16214         93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQ  172 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~  172 (470)
                      .+......    ++.......       ..+.| ..+..+++..+...+++.-.  .+......+.|.+.++.|+++.|+
T Consensus        99 rV~~~~~D----~~~L~~~~l-------qLqaA-IkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAv  164 (459)
T KOG4340|consen   99 RVAFLLLD----NPALHSRVL-------QLQAA-IKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAV  164 (459)
T ss_pred             HHHHHhcC----CHHHHHHHH-------HHHHH-HhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHH
Confidence            98877644    233322211       12223 34555666666655544321  256678888999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh----hCCChH--------HHH-----HHHHHHHHHHHH
Q psy16214        173 EIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK----LAPDHA--------KAK-----ETYKRAKLLKAK  235 (470)
Q Consensus       173 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----~~p~~~--------~~~-----~~~~~~~~~~~~  235 (470)
                      +-|+.+++..--++-.-++++.++++.++++.|+++....++    ..|+..        ++.     ..+.....+...
T Consensus       165 qkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf  244 (459)
T KOG4340|consen  165 QKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF  244 (459)
T ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence            999999999988999999999999999999999998877665    444321        111     122233345555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccC-ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARN-ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF  314 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  314 (470)
                      .-++.++++.++++.|.+.+..   +.|.. .+..+..+.+++..-. .+++.+...-+.-.+.++|--.+++.++-.+|
T Consensus       245 NLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly  320 (459)
T KOG4340|consen  245 NLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLY  320 (459)
T ss_pred             hhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            5668899999999999877654   33332 1223456777776543 46677888888888999998788898998888


Q ss_pred             HHhCCHHHHHHHH
Q psy16214        315 HALGQYKECVIDA  327 (470)
Q Consensus       315 ~~~g~~~~A~~~~  327 (470)
                      .+..-++-|...+
T Consensus       321 CKNeyf~lAADvL  333 (459)
T KOG4340|consen  321 CKNEYFDLAADVL  333 (459)
T ss_pred             hhhHHHhHHHHHH
Confidence            8888777776544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.58  E-value=3.3e-13  Score=134.34  Aligned_cols=192  Identities=12%  Similarity=-0.020  Sum_probs=144.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----------
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS----------   72 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----------   72 (470)
                      +.+++..+...+...+++++|+..++.+++.+|+...+++.+|.++.+.+++.+|...  .++..-+.+.          
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~  107 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD  107 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999998887766  6666655544          


Q ss_pred             ---------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh--------cCCHH
Q psy16214         73 ---------KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE--------ANDYR  135 (470)
Q Consensus        73 ---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~  135 (470)
                               .+++.+|.||-++|+.++|...|+++++++|+|+.+...++..+... +++.|..++.        .++|.
T Consensus       108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~  186 (906)
T PRK14720        108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYV  186 (906)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcch
Confidence                     89999999999999999999999999999999999999999987776 6666655533        35666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHH--------HH------------HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        136 TAMFYLDRAMDQGVASKTYKLM--------KA------------ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       136 ~A~~~~~~~l~~~p~~~~~~~~--------~a------------~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                      .+..++.+.+..+|.+...+..        ++            .+|...++|++++.+++.+++.+|.+..+...++.+
T Consensus       187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~  266 (906)
T PRK14720        187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRF  266 (906)
T ss_pred             HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence            6666666666666665543211        11            334444445555555555555555554444444444


Q ss_pred             Hh
Q psy16214        196 LY  197 (470)
Q Consensus       196 ~~  197 (470)
                      |.
T Consensus       267 y~  268 (906)
T PRK14720        267 YK  268 (906)
T ss_pred             HH
Confidence            43

>PHA03102 Small T antigen; Reviewed

Probab=99.58  E-value=4.7e-15  Score=115.44  Aligned_cols=87  Identities=24%  Similarity=0.368  Sum_probs=72.0

Q ss_pred             cccchhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcC
Q psy16214        354 EVKDYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIME  431 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~  431 (470)
                      +.++++.+||++.++  +..+|+++||++++++|||++.+         +++|+.|++||++|+|+.+|..||..+....
T Consensus         3 e~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~---------~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~   73 (153)
T PHA03102          3 ESKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD---------EEKMKELNTLYKKFRESVKSLRDLDGEEDSS   73 (153)
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch---------hHHHHHHHHHHHHHhhHHHhccccccCCccc
Confidence            346789999999999  99999999999999999999754         4589999999999999999999999765543


Q ss_pred             CCCCCCCCccchhHHHHHHHhcCCC
Q psy16214        432 DSGMGGHAGANLFEQHMFQTYFDPG  456 (470)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~~  456 (470)
                      .++.  ..|     +..|.+.||++
T Consensus        74 ~~~~--~~~-----~~~f~~~fg~~   91 (153)
T PHA03102         74 SEEE--DVP-----SGYVGATFGDR   91 (153)
T ss_pred             cccc--ccH-----HHHhhhhcCCc
Confidence            2222  237     78888878654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.57  E-value=6.9e-11  Score=104.38  Aligned_cols=279  Identities=15%  Similarity=0.086  Sum_probs=211.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q psy16214         41 YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK  120 (470)
Q Consensus        41 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~  120 (470)
                      ..+-|..-+..|+|.+|.....++-+..+...-++..-+.+-.+.|+++.|-.++.++-+..+++....           
T Consensus        87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v-----------  155 (400)
T COG3071          87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV-----------  155 (400)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH-----------
Confidence            344466667789999999999999888888888888889999999999999999999999865554322           


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-H--HHH---HHH
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-A--VFV---RGL  194 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~--~~~---la~  194 (470)
                      ....+...+..++++.|...+.++++..|.++.++.....+|...|+|.+...++.++-+..--+.+ .  +-.   .|.
T Consensus       156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl  235 (400)
T COG3071         156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL  235 (400)
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence            2555667889999999999999999999999999999999999999999999999988776543322 1  111   111


Q ss_pred             HHh--ccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHH
Q psy16214        195 CLY--YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL  272 (470)
Q Consensus       195 ~~~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  272 (470)
                      +-.  ..+..+.=..+++..-..-..++.....+            +.-+...|+.++|.+....+++..-+.     .+
T Consensus       236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~------------a~~li~l~~~~~A~~~i~~~Lk~~~D~-----~L  298 (400)
T COG3071         236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAY------------AERLIRLGDHDEAQEIIEDALKRQWDP-----RL  298 (400)
T ss_pred             HHHHhccccchHHHHHHHhccHHhhcChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHhccCh-----hH
Confidence            111  11112221223332222222334444444            888899999999999999999876552     12


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy16214        273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRL  349 (470)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~  349 (470)
                      ....+  ...-++...=++..++.++..|+++..+..+|..+.+.+.|.+|..+++.+++..|+......+..+...
T Consensus       299 ~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~  373 (400)
T COG3071         299 CRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQ  373 (400)
T ss_pred             HHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHH
Confidence            22222  3467888999999999999999999999999999999999999999999999999997777777555333

>KOG1128|consensus

Probab=99.57  E-value=1.4e-12  Score=122.93  Aligned_cols=221  Identities=19%  Similarity=0.142  Sum_probs=171.4

Q ss_pred             chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      .....-..++..+...|-...|+..|++.        ..|-....||...|+..+|.....+-++ .|+++..|..+|.+
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV  466 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence            34556678899999999999999999875        5566789999999999999999999998 77888888888888


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                      ......++.|..+.+                  ..+..+...+|......++|+++.+.++..++++|-....|+.+|.+
T Consensus       467 ~~d~s~yEkawElsn------------------~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~  528 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSN------------------YISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA  528 (777)
T ss_pred             ccChHHHHHHHHHhh------------------hhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence            666555555544432                  11223445556666667788888888888888888888888888888


Q ss_pred             HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214        196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN  275 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  275 (470)
                      ..+.++++.|..+|..++.++|++..+|.++            +..|...++-.+|...+.+|++.+-.+.    .+|.|
T Consensus       529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl------------s~ayi~~~~k~ra~~~l~EAlKcn~~~w----~iWEN  592 (777)
T KOG1128|consen  529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL------------STAYIRLKKKKRAFRKLKEALKCNYQHW----QIWEN  592 (777)
T ss_pred             HHHHhhhHHHHHHHHHHhhcCCCchhhhhhh------------hHHHHHHhhhHHHHHHHHHHhhcCCCCC----eeeec
Confidence            8888888888888888888888888888877            7778888888888888888887776544    34777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        276 RATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       276 la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      .-.+....|.+++|++.|.+.+.+
T Consensus       593 ymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  593 YMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHHh
Confidence            777777888888888888877765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.57  E-value=8.2e-13  Score=110.33  Aligned_cols=183  Identities=15%  Similarity=0.075  Sum_probs=166.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214        133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL  212 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  212 (470)
                      +...+...+-.....+|.+..+ ..++..+...|+-+.+.....++...+|.+...+..+|...+..|++..|+..++++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA  126 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA  126 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3344666667778889999999 999999999999999999999999999999999988999999999999999999999


Q ss_pred             HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214        213 LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD  292 (470)
Q Consensus       213 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (470)
                      ....|++...+..+            |.+|.+.|++++|...|.+++++.|.++    .+..|+|..+.-.|+++.|..+
T Consensus       127 ~~l~p~d~~~~~~l------------gaaldq~Gr~~~Ar~ay~qAl~L~~~~p----~~~nNlgms~~L~gd~~~A~~l  190 (257)
T COG5010         127 ARLAPTDWEAWNLL------------GAALDQLGRFDEARRAYRQALELAPNEP----SIANNLGMSLLLRGDLEDAETL  190 (257)
T ss_pred             hccCCCChhhhhHH------------HHHHHHccChhHHHHHHHHHHHhccCCc----hhhhhHHHHHHHcCCHHHHHHH
Confidence            99999999999998            9999999999999999999999999955    5599999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      +..+...-+.+..+..+++.+....|++++|.....+-+.
T Consensus       191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~  230 (257)
T COG5010         191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQELL  230 (257)
T ss_pred             HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccccc
Confidence            9999999888999999999999999999999877655443

>KOG3060|consensus

Probab=99.57  E-value=1.4e-11  Score=101.96  Aligned_cols=199  Identities=17%  Similarity=0.083  Sum_probs=171.0

Q ss_pred             hcCCHHHHHHHHHHHhhcC------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q psy16214         16 KLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP   89 (470)
Q Consensus        16 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   89 (470)
                      ...+.++-+++....+...      |+....+-....+.+..|+.+-|..++++.....|++.......|..+...|+++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchh
Confidence            3456777777777776543      3445566677888889999999999999998888999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy16214         90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ  169 (470)
Q Consensus        90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~  169 (470)
                      +|+++|+..++-+|+|..++.....            ..-.+|+.-+|++.+...++..+.+.++|..++++|...|+|.
T Consensus       104 ~A~e~y~~lL~ddpt~~v~~KRKlA------------ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~  171 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTVIRKRKLA------------ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE  171 (289)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHH------------HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence            9999999999999999887642222            2445678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHhccC---ChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        170 EAQEIANSILATDKQNPDAVFVRGLCLYYDD---KMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       170 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      +|.-++++++-..|.++..+..+|.+++-.|   +..-|.++|.++++++|.+..++..+
T Consensus       172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence            9999999999999999999999999998776   56789999999999999776665544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.56  E-value=2.1e-13  Score=108.83  Aligned_cols=126  Identities=20%  Similarity=0.273  Sum_probs=112.8

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY  286 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~  286 (470)
                      ..+++++..+|++......+            |..++..|++++|+..+++++..+|.    ...++..+|.++..+|++
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~la~~~~~~~~~   67 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYAL------------AYNLYQQGRYDEALKLFQLLAAYDPY----NSRYWLGLAACCQMLKEY   67 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHH------------HHHHHHcccHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHHHHH
Confidence            46889999999998887777            99999999999999999999999998    456799999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy16214        287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKR  348 (470)
Q Consensus       287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~  348 (470)
                      ++|+.++++++..+|+++..++.+|.++...|++++|+..++++++++|+ ........++..
T Consensus        68 ~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  130 (135)
T TIGR02552        68 EEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEA  130 (135)
T ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 333444444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.56  E-value=8.7e-15  Score=135.48  Aligned_cols=93  Identities=39%  Similarity=0.712  Sum_probs=71.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC-cCCC-
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI-MEDS-  433 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~-~~~~-  433 (470)
                      .+||++||+...++.++|++|||+++++||||++++      ..++++|+.|++||++|+||.+|+.||..++. ...+ 
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~------~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~   76 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE------PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA   76 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC
Confidence            589999999999999999999999999999999865      23678999999999999999999999985432 1111 


Q ss_pred             CCCCCCccchhHHHHHHHhcCC
Q psy16214        434 GMGGHAGANLFEQHMFQTYFDP  455 (470)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~  455 (470)
                      +.+++.+++.| +++|..||++
T Consensus        77 ~~~~~~~~~~~-~d~f~~~fg~   97 (374)
T PRK14293         77 GFPDMGDMGGF-ADIFETFFSG   97 (374)
T ss_pred             CcCCcccccch-HHHHHHHhcc
Confidence            11111111112 5788888863

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.56  E-value=7e-15  Score=143.24  Aligned_cols=79  Identities=30%  Similarity=0.337  Sum_probs=66.9

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG  434 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~  434 (470)
                      ..+||.+||+.++++..+|++|||++|++||||++++.      .+..+|+.|++||+|||||.+|+.||..+.. +..+
T Consensus       572 d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~------~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~-Gl~~  644 (1136)
T PTZ00341        572 DTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN------EGFHKFKKINEAYQILGDIDKKKMYNKFGYD-GIKG  644 (1136)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHhCCHHHHHHHhhcccc-ccCC
Confidence            46899999999999999999999999999999998762      3677999999999999999999999995443 1223


Q ss_pred             CCCCCc
Q psy16214        435 MGGHAG  440 (470)
Q Consensus       435 ~~~~~~  440 (470)
                      ++-.||
T Consensus       645 ~~~iDP  650 (1136)
T PTZ00341        645 VNFIHP  650 (1136)
T ss_pred             CCccCH
Confidence            344688

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.55  E-value=1.7e-12  Score=108.40  Aligned_cols=182  Identities=15%  Similarity=0.026  Sum_probs=164.0

Q ss_pred             CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214         19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL   98 (470)
Q Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~   98 (470)
                      +-..+...+-.....+|.+..+ .+++..+...|+-+.++....++...+|.+...+..+|......|++..|+..+.++
T Consensus        48 q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA  126 (257)
T COG5010          48 QTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKA  126 (257)
T ss_pred             hhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3344666666777889999888 999999999999999999999999999999999888999999999999999999999


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214         99 QELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI  178 (470)
Q Consensus        99 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  178 (470)
                      ..+.|++..+|..++.+            +.+.|+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+
T Consensus       127 ~~l~p~d~~~~~~lgaa------------ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a  194 (257)
T COG5010         127 ARLAPTDWEAWNLLGAA------------LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA  194 (257)
T ss_pred             hccCCCChhhhhHHHHH------------HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999777776            677788899999999999999999999999999999999999999999999


Q ss_pred             hhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy16214        179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLL  213 (470)
Q Consensus       179 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  213 (470)
                      ....+.+..+..+++.+....|++++|.....+-+
T Consensus       195 ~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         195 YLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            99888899999999999999999999988765543

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.55  E-value=1.1e-12  Score=129.98  Aligned_cols=154  Identities=11%  Similarity=0.027  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC
Q psy16214        137 AMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA  216 (470)
Q Consensus       137 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  216 (470)
                      ++..+.......|.++.++.++|.+....|++++|...++.+++..|++..++..++.++.+.+++++|+..+++++..+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~  150 (694)
T PRK15179         71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG  150 (694)
T ss_pred             hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence            33344444556777778888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA  296 (470)
Q Consensus       217 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (470)
                      |++......+            |.++.+.|++++|+.+|++++...|+    ...++..+|.++..+|+.++|...|+++
T Consensus       151 p~~~~~~~~~------------a~~l~~~g~~~~A~~~y~~~~~~~p~----~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        151 SSSAREILLE------------AKSWDEIGQSEQADACFERLSRQHPE----FENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             CCCHHHHHHH------------HHHHHHhcchHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8888777777            88888888888888888888876666    4566788888888888888888888888


Q ss_pred             HHhCCCCHHH
Q psy16214        297 LEKDPNYLKA  306 (470)
Q Consensus       297 l~~~p~~~~~  306 (470)
                      ++...+-...
T Consensus       215 ~~~~~~~~~~  224 (694)
T PRK15179        215 LDAIGDGARK  224 (694)
T ss_pred             HHhhCcchHH
Confidence            8776554444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.54  E-value=3.1e-13  Score=105.44  Aligned_cols=105  Identities=11%  Similarity=0.065  Sum_probs=99.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .-+.++..|..++..|++++|...|+.+...+|.++..|+++|.|+..+|+|.+|+..|.+++.++|+++.+++++|.|+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPA  107 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~  107 (470)
                      +..|+.+.|.+.|+.++.....++.
T Consensus       114 L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHHhccChh
Confidence            9999999999999999997744443

>KOG0691|consensus

Probab=99.54  E-value=9e-15  Score=126.84  Aligned_cols=91  Identities=35%  Similarity=0.630  Sum_probs=76.0

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG  434 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~  434 (470)
                      ..+||.+||+..++++.+|+++||..+++|||||+++++     .+.++|..+.+||+||+|+++|..||.-......+.
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP-----~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~   78 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDP-----QAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ   78 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCh-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence            468999999999999999999999999999999999843     388999999999999999999999998655433222


Q ss_pred             CCCCCccchhHHHHHHHhcCCC
Q psy16214        435 MGGHAGANLFEQHMFQTYFDPG  456 (470)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~  456 (470)
                       +-.|+     .++|++-|++.
T Consensus        79 -~~~d~-----~~~~r~~f~~d   94 (296)
T KOG0691|consen   79 -GREDQ-----ADGFRKKFGSD   94 (296)
T ss_pred             -hhhhH-----HHHHHHHhhhh
Confidence             33577     77777777643

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.53  E-value=2.4e-14  Score=133.28  Aligned_cols=68  Identities=56%  Similarity=0.926  Sum_probs=62.0

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .+||++||+...++.+||++|||+++++||||+++.+     .+++++|++|++||++|+|+++|+.||..+.
T Consensus         5 ~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~   72 (386)
T PRK14289          5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD-----KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH   72 (386)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence            6899999999999999999999999999999998752     3578899999999999999999999998443

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.53  E-value=2.1e-14  Score=129.22  Aligned_cols=65  Identities=45%  Similarity=0.691  Sum_probs=60.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG  426 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~  426 (470)
                      ++||++||+...++.++|+++||+++++||||++.+      ..++++|++|++||++|+|+.+|+.||.-
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~------~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~   68 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE------PDAEARFKEVAEAWEVLSDEQRRAEYDQL   68 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            689999999999999999999999999999999754      25788999999999999999999999973

>KOG1128|consensus

Probab=99.52  E-value=9.5e-12  Score=117.52  Aligned_cols=220  Identities=14%  Similarity=0.047  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      .-..+|..++..|-...|+..|++.        ..|-....||...|+..+|.....+-++ .|.++..|..+|.+....
T Consensus       400 ~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence            3457788999999999999999874        5677889999999999999999999998 677788888888887776


Q ss_pred             CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214         86 GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL  165 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  165 (470)
                      .-|++|.++.+....      .+.            ...+...+..++|+++..+++..++++|-....|+.+|.+..+.
T Consensus       471 s~yEkawElsn~~sa------rA~------------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql  532 (777)
T KOG1128|consen  471 SLYEKAWELSNYISA------RAQ------------RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL  532 (777)
T ss_pred             HHHHHHHHHhhhhhH------HHH------------HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence            666666666654322      111            22222345679999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214        166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA  245 (470)
Q Consensus       166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (470)
                      ++++.|.+.|..++.+.|++.++|.+++.+|...++-.+|...++++++.+-++...|.++            -.+....
T Consensus       533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy------------mlvsvdv  600 (777)
T KOG1128|consen  533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY------------MLVSVDV  600 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech------------hhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999998            8888999


Q ss_pred             CCHHHHHHHHHHHHhhccc
Q psy16214        246 GKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~p~  264 (470)
                      |.+++|++.|.+.+.+...
T Consensus       601 ge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  601 GEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             ccHHHHHHHHHHHHHhhhh
Confidence            9999999999998866443

>KOG0715|consensus

Probab=99.52  E-value=1.6e-14  Score=127.04  Aligned_cols=86  Identities=44%  Similarity=0.634  Sum_probs=72.2

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCCCC
Q psy16214        357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMG  436 (470)
Q Consensus       357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~~~  436 (470)
                      ++|++|||..+++..|||+||+++++++|||.+.+.      .++++|++|.+|||+|+|++||+.||.-.-..  .+..
T Consensus        44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~------~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~--~~~~  115 (288)
T KOG0715|consen   44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK------EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ--HGEF  115 (288)
T ss_pred             chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc------chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc--cccc
Confidence            899999999999999999999999999999999872      78999999999999999999999999755432  1222


Q ss_pred             CCCccchhHHHHHHHhcCC
Q psy16214        437 GHAGANLFEQHMFQTYFDP  455 (470)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~  455 (470)
                      +.+|     .+.|..+|++
T Consensus       116 ~g~~-----~~~~~~~~~~  129 (288)
T KOG0715|consen  116 GGNP-----FDVFLEFFGG  129 (288)
T ss_pred             cCCc-----cchHHHhhcc
Confidence            3377     5666666655

>KOG0717|consensus

Probab=99.51  E-value=2.4e-14  Score=127.42  Aligned_cols=71  Identities=41%  Similarity=0.729  Sum_probs=65.2

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ..+.||.+|||...+++.+|+++||++||+|||||+++.    -+++...|+.|..||+|||||..|+-||.+..
T Consensus         6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~----ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR----IEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc----HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            346799999999999999999999999999999998763    45789999999999999999999999999876

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.51  E-value=1.7e-11  Score=106.78  Aligned_cols=180  Identities=14%  Similarity=0.062  Sum_probs=134.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHH---HHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY---YGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLI   76 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~   76 (470)
                      +++.++..|..++..|+|++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++.+|++   +.+++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            57789999999999999999999999999999987544   4899999999999999999999999998877   56789


Q ss_pred             HHHHHHHHcC---------------C---hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16214         77 RQIKCNIALG---------------D---APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAM  138 (470)
Q Consensus        77 ~la~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  138 (470)
                      .+|.++..++               +   ..+|+..|++.++..|+..-+......+......+                
T Consensus       111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l----------------  174 (243)
T PRK10866        111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL----------------  174 (243)
T ss_pred             HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH----------------
Confidence            9998875554               1   24688999999999998765432222221111000                


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214        139 FYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQL  211 (470)
Q Consensus       139 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~  211 (470)
                                   ..--+..|..|.+.|.|.-|+.-++.+++..|+.   .+++..++.+|..+|..++|......
T Consensus       175 -------------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        175 -------------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             -------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence                         1112346677777777777777777777777765   45677777777777777777766543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.51  E-value=6.1e-13  Score=123.13  Aligned_cols=113  Identities=27%  Similarity=0.435  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..+...|..++..|+|++|+.+|++++..+|+++.+++++|.++..+|++++|+..+++++.++|.++.+++.+|.++.
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~   81 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM   81 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      .+|++++|+..|+++++++|+++.+...+..+.
T Consensus        82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~  114 (356)
T PLN03088         82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECD  114 (356)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999877766663

>KOG4648|consensus

Probab=99.50  E-value=1.2e-14  Score=124.87  Aligned_cols=220  Identities=20%  Similarity=0.218  Sum_probs=159.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      ..+.+.|+.||++|.|++||.+|.+++..+|.++..+.++|.+|+++.+|..|...|..++.++..+..+|.+.+.+-..
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES  177 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-----------------------HHHHHHHhcCCHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF-----------------------EGASKAFEANDYRTAMFYL  141 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~-----------------------~~a~~~~~~~~~~~A~~~~  141 (470)
                      +|...+|.+.++.++.+.|++.+....++.+......-                       ..+...+..+.++.++..+
T Consensus       178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~  257 (536)
T KOG4648|consen  178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDV  257 (536)
T ss_pred             HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEe
Confidence            99999999999999999999888776666554321100                       0000111223444444444


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH
Q psy16214        142 DRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK  221 (470)
Q Consensus       142 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  221 (470)
                      .+-+.....+..+... +..+...-++++++....+.+...|.........+.+---.|...++...++.++.+.|.+..
T Consensus       258 ~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~  336 (536)
T KOG4648|consen  258 VSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVET  336 (536)
T ss_pred             eccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccccc
Confidence            4433333333333333 555666667777777777766666655444444444445556666666777777777776655


Q ss_pred             HHHH
Q psy16214        222 AKET  225 (470)
Q Consensus       222 ~~~~  225 (470)
                      ....
T Consensus       337 ~~~~  340 (536)
T KOG4648|consen  337 PKET  340 (536)
T ss_pred             chhh
Confidence            4433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.50  E-value=1.2e-12  Score=104.29  Aligned_cols=117  Identities=18%  Similarity=0.140  Sum_probs=77.3

Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy16214         25 KCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD  104 (470)
Q Consensus        25 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  104 (470)
                      +.|++++..+|++..+.+.+|.+++..|++++|+..+++++..+|.++.++..+|.++..+|++++|+..+++++..+|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            35667777777777777777777777777777777777777777777777777777777777777777777777777666


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214        105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT  153 (470)
Q Consensus       105 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  153 (470)
                      ++..+..++.+            +...|++++|+..++++++.+|++..
T Consensus        84 ~~~~~~~la~~------------~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        84 DPRPYFHAAEC------------LLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             ChHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhccccch
Confidence            66554333333            33344444444444444444444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.50  E-value=4.7e-14  Score=95.44  Aligned_cols=64  Identities=47%  Similarity=0.816  Sum_probs=59.5

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhcc
Q psy16214        357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD  424 (470)
Q Consensus       357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd  424 (470)
                      ++|++||+...++.++|+++|+++++.+|||+....+    ..++..|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~----~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE----AEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH----HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh----hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            4799999999999999999999999999999987643    568899999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.48  E-value=2.5e-12  Score=100.48  Aligned_cols=94  Identities=11%  Similarity=0.030  Sum_probs=90.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |..++..|++++|...|+-+..++|.    +...|++||.|+..+|++++|+..|.+++.++|+++.++.+.|.|++.+|
T Consensus        42 A~~ly~~G~l~~A~~~f~~L~~~Dp~----~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         42 AMQLMEVKEFAGAARLFQLLTIYDAW----SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            99999999999999999999999999    45669999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q psy16214        319 QYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~~p~  336 (470)
                      +.+.|.+.|+.++.....
T Consensus       118 ~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        118 NVCYAIKALKAVVRICGE  135 (157)
T ss_pred             CHHHHHHHHHHHHHHhcc
Confidence            999999999999998744

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.48  E-value=1.3e-11  Score=105.15  Aligned_cols=175  Identities=16%  Similarity=0.110  Sum_probs=119.7

Q ss_pred             CccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHH
Q psy16214          1 ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKG   74 (470)
Q Consensus         1 e~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~   74 (470)
                      +.+++.++..|..++..|+|.+|+..|++++...|.+   +.+.+.+|.+++..|++..|+..+++.++..|++   +.+
T Consensus         2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen    2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence            3568899999999999999999999999999998875   7789999999999999999999999999999987   468


Q ss_pred             HHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16214         75 LIRQIKCNIALG-----------DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR  143 (470)
Q Consensus        75 ~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  143 (470)
                      ++.+|.++..+.           ...+|+..|+..+...|+++-+......+......+                     
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l---------------------  140 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRL---------------------  140 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---------------------
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---------------------
Confidence            899999876653           345899999999999999876543222221111100                     


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHHHHhccCChHH
Q psy16214        144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGLCLYYDDKMDL  204 (470)
Q Consensus       144 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~  204 (470)
                              ..--+..|..|.+.|.|..|+..++.+++..|+.+   +++..++.++..+|..+.
T Consensus       141 --------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  141 --------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             --------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             --------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence                    01123355556666666666666666666666553   345556666666666553

>KOG1130|consensus

Probab=99.44  E-value=2.6e-12  Score=113.26  Aligned_cols=286  Identities=19%  Similarity=0.147  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhc------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CCH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISV------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP------RFS   72 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~   72 (470)
                      ..|..+|++|+..++|++|+++-..=|.+      .-..+..--++|.++-.+|.|++|+.++.+-+.+..      ...
T Consensus        56 AIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~  135 (639)
T KOG1130|consen   56 AIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLES  135 (639)
T ss_pred             HHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhh
Confidence            35788999999999999999876544432      122356677899999999999999999988776532      236


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---
Q psy16214         73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV---  149 (470)
Q Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---  149 (470)
                      .+++++|.+|...|+.-.-..--    +....+.++..                      .++.|+++|..-+++..   
T Consensus       136 RAlYNlgnvYhakGk~~g~~~pe----e~g~f~~ev~~----------------------al~~Av~fy~eNL~l~~~lg  189 (639)
T KOG1130|consen  136 RALYNLGNVYHAKGKCTGLEAPE----EKGAFNAEVTS----------------------ALENAVKFYMENLELSEKLG  189 (639)
T ss_pred             HHHhhhhhhhhhcccccCCCChh----hcccccHHHHH----------------------HHHHHHHHHHHHHHHHHHhh
Confidence            78999999999887632110000    00001111110                      11122222222222211   


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214        150 ---ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA  220 (470)
Q Consensus       150 ---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  220 (470)
                         ....++-++|..|+-+|+|+.|+..-+.-+.+....      -.++.++|.++...|+++.|+++|+..+.+.-.  
T Consensus       190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie--  267 (639)
T KOG1130|consen  190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE--  267 (639)
T ss_pred             hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH--
Confidence               122456678888999999999998887766654332      357889999999999999999999988764321  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214        221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALE  298 (470)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (470)
                          .-.+....+.-+..|+.|.-..++++||.++.+-+.+...  +..-...+++.+|.++..+|..++|+.+.++.++
T Consensus       268 ----lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  268 ----LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             ----hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                1122223333444599999999999999999987765432  2222468899999999999999999999888876


Q ss_pred             h-----CCC-CHHHHHHHHHHHHHhCCHHH
Q psy16214        299 K-----DPN-YLKALSRRCKCFHALGQYKE  322 (470)
Q Consensus       299 ~-----~p~-~~~~~~~la~~~~~~g~~~~  322 (470)
                      +     +|. ...+..++...-..+|..+.
T Consensus       344 ~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  344 SSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            5     222 35566777777777776554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.43  E-value=8.7e-11  Score=106.60  Aligned_cols=104  Identities=19%  Similarity=0.187  Sum_probs=62.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCCh
Q psy16214        123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKM  202 (470)
Q Consensus       123 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  202 (470)
                      ..|+..+..++++.|+..++.++...|+++.++...+.+++..++..+|++.+++++.+.|+.+..++++|.+++..|++
T Consensus       311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~  390 (484)
T COG4783         311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP  390 (484)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence            33444555555555555555555555555555556666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        203 DLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       203 ~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      .+|+..++..+..+|+++..|..+
T Consensus       391 ~eai~~L~~~~~~~p~dp~~w~~L  414 (484)
T COG4783         391 QEAIRILNRYLFNDPEDPNGWDLL  414 (484)
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHH
Confidence            666666666666666666666655

>KOG0716|consensus

Probab=99.43  E-value=1.8e-13  Score=113.82  Aligned_cols=69  Identities=51%  Similarity=0.779  Sum_probs=62.9

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      +-++|.+||+.++++.++|||+||++++++|||++.+.     .++..+|++|+.||.+|+|+.||..||+-+.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~-----P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~   98 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN-----PEATDKFKEINTAYAILSDPTKRNVYDEYGE   98 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC-----chhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence            45789999999999999999999999999999999884     3577889999999999999999999998644

>KOG4234|consensus

Probab=99.42  E-value=4.8e-12  Score=100.69  Aligned_cols=107  Identities=38%  Similarity=0.559  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy16214        230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI-NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS  308 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  308 (470)
                      ......+..|+-++..|+|++|...|..||.+.|.-+ ...+.+|.++|.++++++.++.|+..|.++|+++|.+..++.
T Consensus        93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~  172 (271)
T KOG4234|consen   93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE  172 (271)
T ss_pred             HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence            3445556679999999999999999999999998744 335788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        309 RRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++|.+|.++..+++|+..|+++++++|+
T Consensus       173 RRAeayek~ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  173 RRAEAYEKMEKYEEALEDYKKILESDPS  200 (271)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999999999997

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.42  E-value=4.7e-10  Score=100.93  Aligned_cols=174  Identities=17%  Similarity=0.234  Sum_probs=113.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-CChHHHH
Q psy16214        128 AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-DKMDLAV  206 (470)
Q Consensus       128 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~  206 (470)
                      .+...++++|+.++++++              .+|...|++..|..+              +..+|.+|... |++++|+
T Consensus        84 ~~k~~~~~~Ai~~~~~A~--------------~~y~~~G~~~~aA~~--------------~~~lA~~ye~~~~d~e~Ai  135 (282)
T PF14938_consen   84 CYKKGDPDEAIECYEKAI--------------EIYREAGRFSQAAKC--------------LKELAEIYEEQLGDYEKAI  135 (282)
T ss_dssp             HHHHTTHHHHHHHHHHHH--------------HHHHHCT-HHHHHHH--------------HHHHHHHHCCTT--HHHHH
T ss_pred             HHHhhCHHHHHHHHHHHH--------------HHHHhcCcHHHHHHH--------------HHHHHHHHHHHcCCHHHHH
Confidence            444456666666666554              345666766666544              45567788888 8999999


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc---hHHHHHHHHHHHHHc
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI---NSKLLHNRATVLFKM  283 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~la~~~~~~  283 (470)
                      .+|++++.+..........      .......+.++...++|++|++.|++.....-+++..   ....+...+.|++..
T Consensus       136 ~~Y~~A~~~y~~e~~~~~a------~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~  209 (282)
T PF14938_consen  136 EYYQKAAELYEQEGSPHSA------AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM  209 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHH------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCChhhH------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc
Confidence            9999998864322211111      1112233899999999999999999998754332211   224567788899999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCC
Q psy16214        284 GKYNEAIADCTLALEKDPNY-----LKALSRRCKCFH--ALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       284 g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~p  335 (470)
                      |++..|...+++....+|..     ......+-.++.  ....+..|+..|.+..+++|
T Consensus       210 ~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  210 GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence            99999999999999998865     344555555554  35678899999998888875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.42  E-value=2e-10  Score=100.10  Aligned_cols=172  Identities=14%  Similarity=0.103  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHH
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYK---LMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGL  194 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~  194 (470)
                      .+..|...+..|++++|+..|++++...|..+.+.   +.+|.++...+++++|+..+++.++.+|+++   .+++.+|.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~  114 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL  114 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence            46788889999999999999999999999987654   8899999999999999999999999999875   57888998


Q ss_pred             HHhccC---------------C---hHHHHHHHHHHHhhCCChHHHHHHHHHHHHH-----HHHHHHHHHHHhcCCHHHH
Q psy16214        195 CLYYDD---------------K---MDLAVNHFQLLLKLAPDHAKAKETYKRAKLL-----KAKKEEGNEKFVAGKNQEA  251 (470)
Q Consensus       195 ~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~A  251 (470)
                      ++...+               |   ..+|+..|+..++..|++..+.....++..+     ......|..|++.|.|..|
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA  194 (243)
T PRK10866        115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV  194 (243)
T ss_pred             hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            864443               1   2478899999999999987665544333222     2222335555666666666


Q ss_pred             HHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16214        252 FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC  293 (470)
Q Consensus       252 ~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (470)
                      +.-++.+++..|+.+. ...++..+..+|..+|..++|....
T Consensus       195 ~~r~~~v~~~Yp~t~~-~~eal~~l~~ay~~lg~~~~a~~~~  235 (243)
T PRK10866        195 VNRVEQMLRDYPDTQA-TRDALPLMENAYRQLQLNAQADKVA  235 (243)
T ss_pred             HHHHHHHHHHCCCCch-HHHHHHHHHHHHHHcCChHHHHHHH
Confidence            6666666655555443 3455555556666666555555444

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.40  E-value=7.2e-11  Score=107.15  Aligned_cols=153  Identities=26%  Similarity=0.301  Sum_probs=135.5

Q ss_pred             CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                      |....+++..+..++..|++++|...++.++...|+++..+...            +.+++..++..+|.+.+++++..+
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~------------~~i~~~~nk~~~A~e~~~kal~l~  370 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELA------------GDILLEANKAKEAIERLKKALALD  370 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHhcC
Confidence            67788999999999999999999999999999999999988888            999999999999999999999999


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHH
Q psy16214        263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHN  341 (470)
Q Consensus       263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~  341 (470)
                      |.    ...++.++|.++.+.|++.+|+..++..+..+|+++..|..+|++|..+|+..+|...+-....+... .....
T Consensus       371 P~----~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~  446 (484)
T COG4783         371 PN----SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAII  446 (484)
T ss_pred             CC----ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHH
Confidence            98    45679999999999999999999999999999999999999999999999999999999888888876 55666


Q ss_pred             HHHHHHHHhh
Q psy16214        342 FLEEAKRLLK  351 (470)
Q Consensus       342 ~l~~~~~~~~  351 (470)
                      .+..+....+
T Consensus       447 ~l~~A~~~~~  456 (484)
T COG4783         447 FLMRASQQVK  456 (484)
T ss_pred             HHHHHHHhcc
Confidence            6666655543

>KOG0543|consensus

Probab=99.40  E-value=8.5e-12  Score=110.92  Aligned_cols=125  Identities=32%  Similarity=0.398  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc-----------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI-----------NINSKLLHNRATVLFKMGKYNEAIADCTLA  296 (470)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (470)
                      ++.......+.|+.+++.|+|..|...|++++..-....           .....++.|++.|+.++++|.+|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            344555566679999999999999999999986533211           113468999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc
Q psy16214        297 LEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKR  352 (470)
Q Consensus       297 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~  352 (470)
                      |.++|+|..+++++|.++..+|+++.|+..|+++++++|+ .++...|..+....+.
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998 6666666666655543

>KOG4234|consensus

Probab=99.40  E-value=9.2e-12  Score=99.13  Aligned_cols=114  Identities=28%  Similarity=0.462  Sum_probs=105.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR   77 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (470)
                      .+..+...|+.+|..|+|++|...|..||...|..     ...|.++|.+++.++.++.|+..+.++|+++|.+..++.+
T Consensus        94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R  173 (271)
T KOG4234|consen   94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER  173 (271)
T ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH
Confidence            46778999999999999999999999999999974     5688999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         78 QIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      .|.+|..+..+++|++.|+++++.+|....+.....++-
T Consensus       174 RAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~  212 (271)
T KOG4234|consen  174 RAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP  212 (271)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence            999999999999999999999999999887766665553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.39  E-value=1.2e-11  Score=114.58  Aligned_cols=113  Identities=27%  Similarity=0.439  Sum_probs=104.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH  315 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  315 (470)
                      ...|..++..|++++|+.+|++++..+|+    ...++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++.
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~----~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~   81 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPN----NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM   81 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            34599999999999999999999999999    45679999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc
Q psy16214        316 ALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKR  352 (470)
Q Consensus       316 ~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~  352 (470)
                      .+|++++|+..|+++++++|+ ..+...+..+...++.
T Consensus        82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999998 7778888888777754

>KOG4340|consensus

Probab=99.38  E-value=5.3e-10  Score=94.91  Aligned_cols=161  Identities=18%  Similarity=0.179  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      ..+..+|.+|+...+|..|..+|++.-...|......+..+.+++..+.+..|+.........+.-.....-.-+-+.++
T Consensus        45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs  124 (459)
T KOG4340|consen   45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS  124 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence            46788999999999999999999999999999999999999999999999999987765543211112233333444445


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH  164 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  164 (470)
                      .+++..+....++.-.-  +.....            ...+-..++.|+++.|++-|+.+++...-.+.+-+++|.++++
T Consensus       125 e~Dl~g~rsLveQlp~e--n~Ad~~------------in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~  190 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPSE--NEADGQ------------INLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS  190 (459)
T ss_pred             cccCcchHHHHHhccCC--Cccchh------------ccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh
Confidence            55555554444432110  112222            1222224555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHh
Q psy16214        165 LNRLQEAQEIANSIL  179 (470)
Q Consensus       165 ~~~~~~A~~~~~~~l  179 (470)
                      .+++..|+++..+++
T Consensus       191 ~~qyasALk~iSEIi  205 (459)
T KOG4340|consen  191 SRQYASALKHISEII  205 (459)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            555555555555444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.37  E-value=2e-10  Score=97.86  Aligned_cols=167  Identities=20%  Similarity=0.231  Sum_probs=119.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHH
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVAS---KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGL  194 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~  194 (470)
                      .+..|...+..|+|.+|+..|++++...|.+   ..+.+.+|.++...|++++|+..+++.++..|+++   .+++.+|.
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence            4788888999999999999999999998876   47889999999999999999999999999999885   57888898


Q ss_pred             HHhccC-----------ChHHHHHHHHHHHhhCCChHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214        195 CLYYDD-----------KMDLAVNHFQLLLKLAPDHAKAKETYKRAKL-----LKAKKEEGNEKFVAGKNQEAFDIYTEA  258 (470)
Q Consensus       195 ~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~a  258 (470)
                      +++...           ...+|+..|+..+...|++..+.....++..     .......|..|++.|.+..|+..++.+
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v  167 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV  167 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred             HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            876542           3458999999999999998776554433322     222333466666666666666666666


Q ss_pred             HhhcccCccchHHHHHHHHHHHHHcCCHHH
Q psy16214        259 LKIDARNININSKLLHNRATVLFKMGKYNE  288 (470)
Q Consensus       259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~  288 (470)
                      ++..|+.+. ...++..++.++.++|..+.
T Consensus       168 ~~~yp~t~~-~~~al~~l~~~y~~l~~~~~  196 (203)
T PF13525_consen  168 IENYPDTPA-AEEALARLAEAYYKLGLKQA  196 (203)
T ss_dssp             HHHSTTSHH-HHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHCCCCch-HHHHHHHHHHHHHHhCChHH
Confidence            666666544 24566666666666666553

>KOG0543|consensus

Probab=99.37  E-value=2.4e-11  Score=108.11  Aligned_cols=118  Identities=31%  Similarity=0.431  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---------------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLD   68 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~   68 (470)
                      +......|+.+++.|+|..|+..|++++..-+.               -..++.+++.|+.++++|.+|+..+.++|.++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            456788999999999999999999999875321               15688999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy16214         69 PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN  121 (470)
Q Consensus        69 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  121 (470)
                      |++..++++.|.++..+|+++.|+..|++++++.|.|..+...+..+......
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~  340 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE  340 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998888777554433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.36  E-value=1.9e-11  Score=95.15  Aligned_cols=106  Identities=18%  Similarity=0.196  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIR   77 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~   77 (470)
                      ++.++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..+++++..+|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            5789999999999999999999999999999876   5789999999999999999999999999998875   678999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214         78 QIKCNIALGDAPTARSNLKALQELDPDNPAIA  109 (470)
Q Consensus        78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  109 (470)
                      +|.++..+|++++|+..+.+++...|+++.+.
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            99999999999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2047|consensus

Probab=99.34  E-value=1.2e-07  Score=89.02  Aligned_cols=311  Identities=10%  Similarity=0.021  Sum_probs=195.9

Q ss_pred             cCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------------------------CCC--
Q psy16214         17 LKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL------------------------DPR--   70 (470)
Q Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------------------------~p~--   70 (470)
                      .+-.+.++..|++-|+..|...   ...-..+...+++++|.+.+...+..                        +|+  
T Consensus       151 ~~lPets~rvyrRYLk~~P~~~---eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~  227 (835)
T KOG2047|consen  151 HGLPETSIRVYRRYLKVAPEAR---EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV  227 (835)
T ss_pred             CCChHHHHHHHHHHHhcCHHHH---HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence            3445567777777777776653   33345566778888888877766543                        222  


Q ss_pred             -------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHH--HHH---
Q psy16214         71 -------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPD---NPAIAQESKALETMAK--NFE---  123 (470)
Q Consensus        71 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~--~~~---  123 (470)
                                         ....|..||..|++.|.+++|...|++++..--.   ...++...+......-  ..+   
T Consensus       228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~  307 (835)
T KOG2047|consen  228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELAD  307 (835)
T ss_pred             cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence                               1346788999999999999999999999874322   2222222221111000  000   


Q ss_pred             -------------HHHHH--------------------------------HhcCCHHHHHHHHHHHHHh-CCCC-----H
Q psy16214        124 -------------GASKA--------------------------------FEANDYRTAMFYLDRAMDQ-GVAS-----K  152 (470)
Q Consensus       124 -------------~a~~~--------------------------------~~~~~~~~A~~~~~~~l~~-~p~~-----~  152 (470)
                                   .....                                +..++..+-+..|..++.. +|..     .
T Consensus       308 ~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~  387 (835)
T KOG2047|consen  308 EESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPG  387 (835)
T ss_pred             hcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChh
Confidence                         00000                                1127788888888888765 5533     3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH--------
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQN----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA--------  220 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~--------  220 (470)
                      ..|...|..|...|+.+.|..+++++++..-..    ..+|...|..-+...+++.|+++++++...-....        
T Consensus       388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~  467 (835)
T KOG2047|consen  388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE  467 (835)
T ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence            678889999999999999999999998865332    56889999999999999999999999876432211        


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                      .+...+-  +.+..+..-+......|-++.....|++.+.+.--    .+.+..|.|..+....-+++|.+.|++.+.+.
T Consensus       468 pvQ~rlh--rSlkiWs~y~DleEs~gtfestk~vYdriidLria----TPqii~NyAmfLEeh~yfeesFk~YErgI~LF  541 (835)
T KOG2047|consen  468 PVQARLH--RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA----TPQIIINYAMFLEEHKYFEESFKAYERGISLF  541 (835)
T ss_pred             cHHHHHH--HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence            1111110  01111111244555566777777777777766555    34456777777777777788888888877775


Q ss_pred             --CCCHHHHHHHHHH---HHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        301 --PNYLKALSRRCKC---FHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       301 --p~~~~~~~~la~~---~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                        |.-.++|...-..   -+.--..+.|...|++|++..|.
T Consensus       542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence              3444444433222   22334567788888888887774

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.33  E-value=6e-12  Score=87.02  Aligned_cols=68  Identities=34%  Similarity=0.502  Sum_probs=58.1

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCC
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDP   69 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p   69 (470)
                      ++++.|..+|..++..|+|++|+.+|+++++.+|+++.+++++|.++..+| ++.+|+..++++++++|
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            357788888888888888888888888888888888888888888888888 68888888888888887

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.33  E-value=1.2e-08  Score=108.21  Aligned_cols=314  Identities=12%  Similarity=-0.033  Sum_probs=211.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------CHHHHH
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAIS-VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR---------FSKGLI   76 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~   76 (470)
                      +...|..+...|++..+...+..+-. ....++.....++.++...|++++|...+..+...-+.         ......
T Consensus       377 l~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~  456 (903)
T PRK04841        377 LLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA  456 (903)
T ss_pred             HHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence            44455666666776665555544310 11123445567788888999999999999888764221         133455


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----
Q psy16214         77 RQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS-----  151 (470)
Q Consensus        77 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----  151 (470)
                      .++.++...|++++|...+++++...+.......  +..     ....+..+...|++++|...+.+++......     
T Consensus       457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~a-----~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~  529 (903)
T PRK04841        457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSR--IVA-----TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY  529 (903)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH--HHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence            6788889999999999999999986554322111  111     1234455677899999999999998663321     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--------ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHH
Q psy16214        152 -KTYKLMKAECLAHLNRLQEAQEIANSILATDKQ--------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA  222 (470)
Q Consensus       152 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  222 (470)
                       ...+..++.++...|++++|...+.+++.....        ....+..+|.++...|++++|...+.+++.........
T Consensus       530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  609 (903)
T PRK04841        530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence             235567899999999999999999998875221        12345678889999999999999999998764322110


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ---SKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      ..       .......+.++...|++++|...+.++..+.+......   ..........+...|+.+.|..++......
T Consensus       610 ~~-------~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~  682 (903)
T PRK04841        610 QQ-------LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP  682 (903)
T ss_pred             HH-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence            00       01112238889999999999999999977644321100   111111234455688999999988776553


Q ss_pred             CCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        300 DPNYL----KALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       300 ~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      .+...    ..+..++.++...|++++|...+++++...
T Consensus       683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~  721 (903)
T PRK04841        683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA  721 (903)
T ss_pred             CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            32222    225678999999999999999999999874

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.31  E-value=1.2e-10  Score=104.03  Aligned_cols=190  Identities=19%  Similarity=0.179  Sum_probs=144.8

Q ss_pred             CHHHHHHHHHHHhhcC--CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214         19 QYSKALKCYSEAISVC--PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK   96 (470)
Q Consensus        19 ~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (470)
                      +-+.++..++..+...  +.++......|.++...|++++|+..+.+.     .+.+.......+++.+++++.|.+.++
T Consensus        81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~  155 (290)
T PF04733_consen   81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK  155 (290)
T ss_dssp             THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444444444433222  234556667778888889999999888754     567888889999999999999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214         97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFEA--NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI  174 (470)
Q Consensus        97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~  174 (470)
                      .+.+.+.+..-....            .|...+..  ..+.+|...|+.+....+.++.++..+|.+++.+|+|++|...
T Consensus       156 ~~~~~~eD~~l~qLa------------~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~  223 (290)
T PF04733_consen  156 NMQQIDEDSILTQLA------------EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEEL  223 (290)
T ss_dssp             HHHCCSCCHHHHHHH------------HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHhcCCcHHHHHHH------------HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            998887665443322            22223333  3699999999999888889999999999999999999999999


Q ss_pred             HHHHhhcCCCChHHHHHHHHHHhccCCh-HHHHHHHHHHHhhCCChHHHHHH
Q psy16214        175 ANSILATDKQNPDAVFVRGLCLYYDDKM-DLAVNHFQLLLKLAPDHAKAKET  225 (470)
Q Consensus       175 ~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~  225 (470)
                      +.+++..+|++++++.+++.+....|+. +.+.+++.++...+|+++.+...
T Consensus       224 L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  224 LEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            9999999999999999999999999998 56777888888899998876544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.30  E-value=7.4e-12  Score=119.63  Aligned_cols=66  Identities=42%  Similarity=0.793  Sum_probs=60.7

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      ++||++||+...++..+|+++||++++++|||++..      ..+..+|+.|++||++|+|+.+|+.||..+
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~------~eAeekFqeINEAYEVLSDP~KRa~YD~fG   67 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA------PDAASIFAEINEANDVLSNPKKRANYDKYG   67 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHhCCHHHHHHHhhhc
Confidence            589999999999999999999999999999999875      346778999999999999999999999854

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG2047|consensus

Probab=99.28  E-value=3.9e-07  Score=85.74  Aligned_cols=303  Identities=11%  Similarity=0.014  Sum_probs=218.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---hh-----HHHHHHHHHHHHcC-------------ChHHHHHHHHHH
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPN---VA-----AYYGNRAACYMMLG-------------MYTYALDDAKLA   64 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~-----~~~~~~a~~~~~~g-------------~~~~A~~~~~~a   64 (470)
                      .|..+|..|...|.|++|...|++++..--.   ..     -+.+.-..+...++             +.+-.+..|+..
T Consensus       250 Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~l  329 (835)
T KOG2047|consen  250 LWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESL  329 (835)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHH
Confidence            5788999999999999999999999975321   11     11111111222222             123333444443


Q ss_pred             ------------HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCh-----HHHHHHHHHHHHHHHHHHHH
Q psy16214         65 ------------VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE-LDPDNP-----AIAQESKALETMAKNFEGAS  126 (470)
Q Consensus        65 ------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~-----~~~~~l~~~~~~~~~~~~a~  126 (470)
                                  +..+|++..-|.....++  .|+..+-+..|..++. .+|.-+     ..|..++.+           
T Consensus       330 m~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fakl-----------  396 (835)
T KOG2047|consen  330 MNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKL-----------  396 (835)
T ss_pred             HhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHH-----------
Confidence                        345788888887776655  6788888999988875 566543     344444444           


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------------------
Q psy16214        127 KAFEANDYRTAMFYLDRAMDQGVAS----KTYKLMKAECLAHLNRLQEAQEIANSILATDKQ------------------  184 (470)
Q Consensus       127 ~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------------  184 (470)
                       +-..|+.+.|...++++....-..    ..+|..-|..-+...+++.|+++++.+......                  
T Consensus       397 -Ye~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr  475 (835)
T KOG2047|consen  397 -YENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR  475 (835)
T ss_pred             -HHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH
Confidence             566788888999999998774322    578888999999999999999999998764222                  


Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214        185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  264 (470)
                      +..+|...+......|-++.....|.+++.+.--.|....++            |..+....-++++.+.|++.+.+.+-
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny------------AmfLEeh~yfeesFk~YErgI~LFk~  543 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY------------AMFLEEHKYFEESFKAYERGISLFKW  543 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH------------HHHHHhhHHHHHHHHHHHcCCccCCC
Confidence            134677788888888999999999999999888888888888            88888888899999999999988643


Q ss_pred             CccchHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        265 NININSKLLH---NRATVLFKMGKYNEAIADCTLALEKDPNY--LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       265 ~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ..  ...+|.   .....-+.--..+.|...|++|++..|..  -..++..+..-..-|--..|+..|++|..--+.
T Consensus       544 p~--v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~  618 (835)
T KOG2047|consen  544 PN--VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKE  618 (835)
T ss_pred             cc--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCH
Confidence            22  233333   33333344457899999999999988743  335566777777889999999999998776554

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.28  E-value=1.3e-11  Score=82.39  Aligned_cols=59  Identities=61%  Similarity=0.943  Sum_probs=53.8

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhh
Q psy16214        357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTK  419 (470)
Q Consensus       357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~  419 (470)
                      ++|.+||+..+++.++|+++|+++++.+|||++...    ...++..|..|++||++|+||.+
T Consensus         2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~----~~~~~~~~~~l~~Ay~~L~~~~~   60 (60)
T smart00271        2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD----KEEAEEKFKEINEAYEVLSDPEK   60 (60)
T ss_pred             CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----hHHHHHHHHHHHHHHHHHcCCCC
Confidence            689999999999999999999999999999998753    46688899999999999999853

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.27  E-value=2.8e-11  Score=98.20  Aligned_cols=69  Identities=25%  Similarity=0.497  Sum_probs=63.0

Q ss_pred             chhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        357 DYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       357 ~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      +||.+||++..  .+..+|+++|+++++++|||++.+.++..+..+...+..|++||++|+||.+|..|+-
T Consensus         2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll   72 (171)
T PRK05014          2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL   72 (171)
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence            68999999985  6778999999999999999999887777777788999999999999999999999974

>KOG1941|consensus

Probab=99.25  E-value=3.3e-09  Score=92.55  Aligned_cols=317  Identities=15%  Similarity=0.120  Sum_probs=220.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC--CHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSL----DPR--FSK   73 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~--~~~   73 (470)
                      .+......|..++...++++|+..+.+.+..-.+.   ...+-.+..+...+|.|++++...--.+..    +..  ..+
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567889999999999999999999998765443   334555667788889988887765443332    222  246


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214         74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT  153 (470)
Q Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  153 (470)
                      ++.++++.+..+-++.+++.+-+..+.+....+.-                                         ....
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~-----------------------------------------~~gq  123 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ-----------------------------------------LGGQ  123 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc-----------------------------------------ccch
Confidence            78888888888888888888887777655443310                                         1112


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHHHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATDKQN------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETY  226 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~  226 (470)
                      ....++.++..++.++++++.|+.+++...++      ..++..+|.++....|+++|+.+..++.++..... .-|.. 
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~-  202 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL-  202 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH-
Confidence            34447788888888888999998888765443      24778899999999999999999988887543221 00110 


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q psy16214        227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID--ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN--  302 (470)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--  302 (470)
                        ..........+..+..+|..-.|.++.+++.++.  ..+..+.+.....+|.+|...|+.+.|..-|+.|......  
T Consensus       203 --kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g  280 (518)
T KOG1941|consen  203 --KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG  280 (518)
T ss_pred             --HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh
Confidence              0111223345888999999999999999998653  3444456788888999999999999999999999876322  


Q ss_pred             ----CHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHhcCCChhHHHHHHHHHHHhhcccccchhhhccCCCCC
Q psy16214        303 ----YLKALSRRCKCFHALGQYKE-----CVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNA  368 (470)
Q Consensus       303 ----~~~~~~~la~~~~~~g~~~~-----A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~  368 (470)
                          ...++...++++....-..+     |++.-++++++..+....-...++...+     ...|+.+|+..+.
T Consensus       281 drmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrl-----a~iYrs~gl~d~~  350 (518)
T KOG1941|consen  281 DRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRL-----ASIYRSKGLQDEL  350 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHH-----HHHHHhccchhHH
Confidence                25667777777776655554     8888888888765533333333333333     4456666655433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.24  E-value=1.3e-10  Score=86.30  Aligned_cols=99  Identities=35%  Similarity=0.451  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      .++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCC
Q psy16214         86 GDAPTARSNLKALQELDPD  104 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~  104 (470)
                      |+++.|...+.+++...|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988763

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.24  E-value=4.3e-11  Score=82.71  Aligned_cols=67  Identities=34%  Similarity=0.487  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG-QYKECVIDAEKIYKMDN  335 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~p  335 (470)
                      .+.+|..+|.++...|++++|+..|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            35679999999999999999999999999999999999999999999999 79999999999999988

...

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.23  E-value=6.5e-11  Score=95.29  Aligned_cols=68  Identities=25%  Similarity=0.457  Sum_probs=59.4

Q ss_pred             cchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        356 KDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       356 ~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      .+||.+||++..  ++..+++++|+++++++|||+..+  +..+..+...+..|++||++|+||.+|+.|+-
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~--~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL   71 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT--LQEKEQNLIIASELNNAYSTLKDALKRAEYML   71 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            478999999986  678999999999999999999865  44455566789999999999999999999954

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.22  E-value=3.1e-11  Score=86.94  Aligned_cols=82  Identities=27%  Similarity=0.415  Sum_probs=73.9

Q ss_pred             hcCCHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16214         16 KLKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARS   93 (470)
Q Consensus        16 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   93 (470)
                      .+|+|++|+.+|++++..+|.  +...++.+|.|++..|+|++|+..+++ ...+|.++...+.+|.|+..+|++++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  577888899999999999999999999 88899888999999999999999999999


Q ss_pred             HHHHH
Q psy16214         94 NLKAL   98 (470)
Q Consensus        94 ~~~~~   98 (470)
                      +|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>KOG4648|consensus

Probab=99.22  E-value=7.3e-12  Score=107.95  Aligned_cols=210  Identities=16%  Similarity=0.058  Sum_probs=173.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC
Q psy16214        122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK  201 (470)
Q Consensus       122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~  201 (470)
                      -+.+..++.+|.|++|+.+|.+.+..+|.++..+.++|.+|++..++..|...+..++.++.....+|..++.+...+|+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            56677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH-----------------------HHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214        202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA-----------------------KKEEGNEKFVAGKNQEAFDIYTEA  258 (470)
Q Consensus       202 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~A~~~~~~a  258 (470)
                      ..+|.+.++.+|++.|++......+..+.....                       ....|..+...+.++.++.++..-
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~  260 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSP  260 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeecc
Confidence            999999999999999998877666554422110                       112256666667777777777665


Q ss_pred             HhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        259 LKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +.....+.    .+-.+ +..+.+..+++.++..+.+++..+|.........+.+-.-+|...++...++.++.+.|.
T Consensus       261 ~A~~~~~~----~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~  333 (536)
T KOG4648|consen  261 RATIDDSN----QLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPA  333 (536)
T ss_pred             ccccCccc----cCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccc
Confidence            55444422    22223 677788888999999999999999988888888888888888899999999999999987

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.22  E-value=3.9e-11  Score=78.47  Aligned_cols=55  Identities=58%  Similarity=0.921  Sum_probs=50.7

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCC
Q psy16214        357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD  416 (470)
Q Consensus       357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d  416 (470)
                      ++|++||+...++.++|+++|+++++.||||+....     ..+...|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-----~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-----PEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHhcC
Confidence            479999999999999999999999999999998762     5678999999999999987

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.22  E-value=6.9e-10  Score=92.13  Aligned_cols=82  Identities=20%  Similarity=0.138  Sum_probs=53.1

Q ss_pred             chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214         36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES  112 (470)
Q Consensus        36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  112 (470)
                      ..+.+++.+|.++...|++++|+..|+++++..|+.   ..++..+|.++..+|++++|+..+.+++...|.+...+..+
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  112 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI  112 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            345566667777777777777777777776665542   34666677777777777777777777777766666666555


Q ss_pred             HHHHH
Q psy16214        113 KALET  117 (470)
Q Consensus       113 ~~~~~  117 (470)
                      +.++.
T Consensus       113 g~~~~  117 (172)
T PRK02603        113 AVIYH  117 (172)
T ss_pred             HHHHH
Confidence            55543

>PRK15331 chaperone protein SicA; Provisional

Probab=99.22  E-value=3.1e-10  Score=89.17  Aligned_cols=105  Identities=13%  Similarity=0.089  Sum_probs=98.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .-+..+..|..++..|++++|...|+-....+|.++..+..+|.|+..+++|++|+..|..+..++++++...+..|.|+
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~  115 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAI  108 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~  108 (470)
                      +.+|+.+.|..+|..++. .|.+..+
T Consensus       116 l~l~~~~~A~~~f~~a~~-~~~~~~l  140 (165)
T PRK15331        116 LLMRKAAKARQCFELVNE-RTEDESL  140 (165)
T ss_pred             HHhCCHHHHHHHHHHHHh-CcchHHH
Confidence            999999999999999998 4555443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.21  E-value=7.1e-11  Score=85.04  Aligned_cols=83  Identities=34%  Similarity=0.492  Sum_probs=74.4

Q ss_pred             cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16214        245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV  324 (470)
Q Consensus       245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  324 (470)
                      .|+++.|+..+++++...|.++  ....++.+|.|++.+|++++|+..+++ ...+|.++...+.+|.|+..+|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            6899999999999999999754  456788899999999999999999999 8889999999999999999999999999


Q ss_pred             HHHHHH
Q psy16214        325 IDAEKI  330 (470)
Q Consensus       325 ~~~~~a  330 (470)
                      ..++++
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            999875

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.20  E-value=1e-10  Score=94.94  Aligned_cols=75  Identities=33%  Similarity=0.522  Sum_probs=66.2

Q ss_pred             ccchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhcc---CCCCC
Q psy16214        355 VKDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD---RGEDI  429 (470)
Q Consensus       355 ~~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd---~~~~~  429 (470)
                      ..+||.+||++..  .+..+|+++|+++++++|||++...++.++..+...+..|++||++|+||.+|..|+   .|.+.
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~~~   84 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGVDV   84 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCCCC
Confidence            3689999999985  578899999999999999999987777777778888999999999999999999998   45554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=99.20  E-value=5.3e-09  Score=94.12  Aligned_cols=195  Identities=17%  Similarity=0.236  Sum_probs=131.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCCC--C----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATDKQ--N----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKL  231 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  231 (470)
                      .|.+|...+++++|...|.++....-.  +    ...+...+.++... ++++|+.++++++.+.-.......      .
T Consensus        41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~------a  113 (282)
T PF14938_consen   41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ------A  113 (282)
T ss_dssp             HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH------H
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH------H
Confidence            566777778888888888777554321  1    23455666666555 999999999999875322211111      1


Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy16214        232 LKAKKEEGNEKFVA-GKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-----  303 (470)
Q Consensus       232 ~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  303 (470)
                      .....+.|.+|... +++++|+++|++|+.....  .+.....++..+|.++..+|+|++|++.|+++....-++     
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            11223349999998 9999999999999987432  222346788899999999999999999999998753221     


Q ss_pred             --HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHhhcccccchh
Q psy16214        304 --LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS---RENHNFLEEAKRLLKRSEVKDYY  359 (470)
Q Consensus       304 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~---~~~~~~l~~~~~~~~~~~~~~~y  359 (470)
                        ...++..+.|++..|++..|...+++....+|+   ..-...+..+.......+...+-
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~  254 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFT  254 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHH
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHH
Confidence              245677888999999999999999999999986   33344555555555555444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.7e-09  Score=93.27  Aligned_cols=123  Identities=17%  Similarity=0.170  Sum_probs=97.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC---hHHHHHHH
Q psy16214        133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK---MDLAVNHF  209 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~  209 (470)
                      ..+..+.-++..+..+|++.+-|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.+++...+   ..++...+
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            355566667777788888888888888888888888888888888888888888888888887765543   45777888


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214        210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN  267 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  267 (470)
                      ++++..+|++..+...+            |..++..|+|.+|+..++..+...|.+.+
T Consensus       217 ~~al~~D~~~iral~lL------------A~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         217 RQALALDPANIRALSLL------------AFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHhcCCccHHHHHHH------------HHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            88888888888888887            88888888888888888888887776544

>KOG0721|consensus

Probab=99.19  E-value=5.2e-11  Score=95.77  Aligned_cols=73  Identities=32%  Similarity=0.562  Sum_probs=66.2

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCCC
Q psy16214        357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSG  434 (470)
Q Consensus       357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~~  434 (470)
                      +-|++||++..+++.||||+||.+..++||||++..     ...++.|..|+.||..|+|++.|..|..-+.++++++
T Consensus       100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~-----~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDGpq~  172 (230)
T KOG0721|consen  100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE-----EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDGPQA  172 (230)
T ss_pred             CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc-----chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCCccc
Confidence            459999999999999999999999999999998762     4678899999999999999999999999888887654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.18  E-value=1.4e-10  Score=78.96  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS   72 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~   72 (470)
                      +.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            35677777777777777777777777777777777777777777777777777777777777653

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.18  E-value=9.2e-10  Score=85.52  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRCKCFH  315 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~  315 (470)
                      |..+...|++++|+..|.+++...|+++. ...+++.+|.++...|++++|+..+++++..+|++   +.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~   87 (119)
T TIGR02795         9 ALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ   87 (119)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence            55555555555555555555555554332 13445555666666666666666666655555543   445555566666


Q ss_pred             HhCCHHHHHHHHHHHHhcCCC
Q psy16214        316 ALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       316 ~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .+|++++|+..++++++..|+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        88 ELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HhCChHHHHHHHHHHHHHCcC
Confidence            666666666666666665555

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG3081|consensus

Probab=99.17  E-value=1.3e-07  Score=79.53  Aligned_cols=175  Identities=21%  Similarity=0.165  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL  232 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  232 (470)
                      ..+..-|.++...+++++|++.....     .+.++...-..++.++.+.+-|.+.+++....+.+.......-      
T Consensus       109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~------  177 (299)
T KOG3081|consen  109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQ------  177 (299)
T ss_pred             HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH------
Confidence            45556678899999999999988763     3456666677888999999999999999998876654322111      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                       ++   .......+++.+|.-+|++.-...|.    .+.+....+.|++.+++|++|...++.++..++++++++.++..
T Consensus       178 -aw---v~la~ggek~qdAfyifeE~s~k~~~----T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv  249 (299)
T KOG3081|consen  178 -AW---VKLATGGEKIQDAFYIFEELSEKTPP----TPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV  249 (299)
T ss_pred             -HH---HHHhccchhhhhHHHHHHHHhcccCC----ChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence             00   12222345788999999998876555    35678999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHH-HHHHHHHhcCCChhHHHHHHHH
Q psy16214        313 CFHALGQYKECV-IDAEKIYKMDNSRENHNFLEEA  346 (470)
Q Consensus       313 ~~~~~g~~~~A~-~~~~~a~~~~p~~~~~~~l~~~  346 (470)
                      +-...|...++. +.+.+....+|+......+.+.
T Consensus       250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk~~~ek  284 (299)
T KOG3081|consen  250 LALHLGKDAEVTERNLSQLKLSHPEHPFVKHLNEK  284 (299)
T ss_pred             HHHHhCCChHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            999999876665 4556666777876655555433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.17  E-value=4.9e-09  Score=84.22  Aligned_cols=126  Identities=23%  Similarity=0.167  Sum_probs=104.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHH
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVAS---KTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGL  194 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~  194 (470)
                      .+..+...+..++...+...++.++..+|+.   ..+.+.+|.++...|++++|+..|+.++...|+.   +.+.+.++.
T Consensus        14 ~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   14 LYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            3555555667889999999999999999998   4677889999999999999999999999987655   457889999


Q ss_pred             HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214        195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL  259 (470)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  259 (470)
                      +++..|++++|+..++.+ ...+-.+.+....            |.++...|++++|+..|++++
T Consensus        94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~------------Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQI-PDEAFKALAAELL------------GDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHH------------HHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999763 2333334444444            999999999999999999875

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.16  E-value=1.4e-09  Score=95.43  Aligned_cols=106  Identities=10%  Similarity=0.015  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHH-HhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHH
Q psy16214          4 AEKHKEDGNTQ-YKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLI   76 (470)
Q Consensus         4 a~~~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~   76 (470)
                      ...++..|..+ +..|+|++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|+++++..|++   +.+++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            36788888887 66799999999999999999997   5899999999999999999999999999988874   78999


Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214         77 RQIKCNIALGDAPTARSNLKALQELDPDNPAIA  109 (470)
Q Consensus        77 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  109 (470)
                      .+|.++..+|++++|...|+++++..|+...+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999999999999999987653

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=4e-09  Score=85.51  Aligned_cols=105  Identities=19%  Similarity=0.225  Sum_probs=75.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..+++.|..|-..|-+.-|.--|++++.+.|..+.+++.+|..+...|+|+.|.+.|...++++|.+.-++.+.|..+
T Consensus        64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~  143 (297)
T COG4785          64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  143 (297)
T ss_pred             HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence            45566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPA  107 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~  107 (470)
                      +--|++.-|.+.+.+-.+.+|++|-
T Consensus       144 YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         144 YYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             eecCchHhhHHHHHHHHhcCCCChH
Confidence            7777777777777777776776653

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.15  E-value=6.4e-08  Score=81.75  Aligned_cols=189  Identities=16%  Similarity=0.089  Sum_probs=134.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS---KGLI   76 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~   76 (470)
                      .+..|+..|...++.|+|++|+..|+.+...+|..   ..+...++.++++.+++++|+..+++-+.+.|+++   .+++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            57889999999999999999999999999998875   67889999999999999999999999999998874   4677


Q ss_pred             HHHHHHHHcC--------ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy16214         77 RQIKCNIALG--------DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG  148 (470)
Q Consensus        77 ~la~~~~~~g--------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  148 (470)
                      ..|.++...=        -..+|+..|+..+...|++.-+-.....+......                           
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~---------------------------  165 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDA---------------------------  165 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH---------------------------
Confidence            7788766432        24578889999999999986543332222111110                           


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214        149 VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA  220 (470)
Q Consensus       149 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  220 (470)
                        -...-...|..|.+.|.+-.|+.-++.+++..|+.   .+++..+..+|..+|-.++|.+.-.-+-...|++.
T Consensus       166 --LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         166 --LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             --HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence              01122345666666777777777777766665554   34566666666777776666655544444444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3.5e-09  Score=91.30  Aligned_cols=121  Identities=21%  Similarity=0.285  Sum_probs=110.8

Q ss_pred             ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q psy16214        201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL  280 (470)
Q Consensus       201 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~  280 (470)
                      +.+.-+.-++.-+..+|++...|..+            |.+|+..|++..|...|.+++++.|+++    .++..+|.++
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~L------------g~~ym~~~~~~~A~~AY~~A~rL~g~n~----~~~~g~aeaL  200 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLL------------GRAYMALGRASDALLAYRNALRLAGDNP----EILLGLAEAL  200 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHH------------HHHHHHhcchhHHHHHHHHHHHhCCCCH----HHHHHHHHHH
Confidence            46677888899999999999999999            9999999999999999999999999955    5588889888


Q ss_pred             HHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214        281 FKMGK---YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSR  337 (470)
Q Consensus       281 ~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  337 (470)
                      +.+.+   ..++...+++++.++|+++.+.+.+|..+...|+|.+|+..++..++..|..
T Consensus       201 ~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         201 YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            76653   6789999999999999999999999999999999999999999999999873

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.14  E-value=4e-09  Score=84.78  Aligned_cols=123  Identities=19%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             ccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q psy16214        198 YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA  277 (470)
Q Consensus       198 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la  277 (470)
                      ..++...+...++..+...|+++......         ...|.+++..|++++|+..|+.++...|+. .+...+...++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~---------l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA   92 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAA---------LQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLA   92 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHH---------HHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHH
Confidence            46777777777777777777774332221         112777788888888888888887766443 33456777788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16214        278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIY  331 (470)
Q Consensus       278 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  331 (470)
                      .++...|++++|+..++. +.-.+-.+.++..+|.++...|++++|+..|++++
T Consensus        93 ~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            888888888888888865 33334456677778888888888888888888764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.13  E-value=8.6e-07  Score=78.03  Aligned_cols=49  Identities=24%  Similarity=0.180  Sum_probs=24.6

Q ss_pred             CChHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214         52 GMYTYALDDAKLAVSLDPR--FSKGLIRQIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        52 g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      +.+..+...+..++...+.  ........+..+...+++..+...+...+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALE   87 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            4444555555555554444  244445555555555555555555555443

>PRK11906 transcriptional regulator; Provisional

Probab=99.13  E-value=7.2e-09  Score=94.94  Aligned_cols=160  Identities=14%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhcCC---HHHHHHHHHHHh---hcCCchhHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcCCCC
Q psy16214          7 HKEDGNTQYKLKQ---YSKALKCYSEAI---SVCPNVAAYYGNRAACYMML---------GMYTYALDDAKLAVSLDPRF   71 (470)
Q Consensus         7 ~~~~g~~~~~~g~---~~~A~~~~~~al---~~~p~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~al~~~p~~   71 (470)
                      ++..|...+..+.   ...|+.+|.+++   .++|..+.+|..++.|++..         ....+|....+++++++|.+
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            3455555544432   345566666666   66666666666666666543         12345555666666666666


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy16214         72 SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS  151 (470)
Q Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  151 (470)
                      +.++..+|.++...++++.|+..|++++.++|+...                                            
T Consensus       338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~--------------------------------------------  373 (458)
T PRK11906        338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIAS--------------------------------------------  373 (458)
T ss_pred             HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHH--------------------------------------------
Confidence            666666666666666666666666666655555554                                            


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH-HhccCChHHHHHHHHHH
Q psy16214        152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC-LYYDDKMDLAVNHFQLL  212 (470)
Q Consensus       152 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~~  212 (470)
                        +++..|.+....|+.++|++.++++++++|....+-...-.+ .+...-.+.|+..|-+-
T Consensus       374 --~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (458)
T PRK11906        374 --LYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKE  433 (458)
T ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhc
Confidence              455555556666666666666666666666554433332222 34445556666665443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.12  E-value=3.6e-09  Score=87.55  Aligned_cols=123  Identities=17%  Similarity=0.204  Sum_probs=96.4

Q ss_pred             ChHHHHHHHHHHHhhCCChHH--HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHH
Q psy16214        201 KMDLAVNHFQLLLKLAPDHAK--AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT  278 (470)
Q Consensus       201 ~~~~A~~~~~~~l~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~  278 (470)
                      .+..+...+...++..+....  .+..+            |.++...|++++|+..|++++.+.|+... .+.++.++|.
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------g~~~~~~g~~~~A~~~~~~al~l~~~~~~-~~~~~~~lg~   80 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRD------------GMSAQSEGEYAEALQNYYEAMRLEIDPYD-RSYILYNIGL   80 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhccccchh-hHHHHHHHHH
Confidence            355555555555554444432  23333            99999999999999999999988775432 3568999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HhCCHH-------HHHHHHHHHHhcCCC
Q psy16214        279 VLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH-------ALGQYK-------ECVIDAEKIYKMDNS  336 (470)
Q Consensus       279 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~a~~~~p~  336 (470)
                      ++..+|++++|+..+++++.++|.....+..+|.++.       .+|+++       +|+..|++++..+|.
T Consensus        81 ~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~  152 (168)
T CHL00033         81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG  152 (168)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999999999999999999998       777766       666666677777875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.11  E-value=1.7e-09  Score=89.42  Aligned_cols=104  Identities=23%  Similarity=0.147  Sum_probs=89.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      .+..++.+|..+...|++++|+..|++++.+.|+   .+.++.++|.++...|++++|+..+++++.++|.....+..+|
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la  113 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA  113 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            4677899999999999999999999999988765   3468999999999999999999999999999999999999999


Q ss_pred             HHHH-------HcCChH-------HHHHHHHHHHhcCCCCh
Q psy16214         80 KCNI-------ALGDAP-------TARSNLKALQELDPDNP  106 (470)
Q Consensus        80 ~~~~-------~~g~~~-------~A~~~~~~~l~~~p~~~  106 (470)
                      .++.       .+|+++       +|+.++++++..+|.+.
T Consensus       114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            8888       777766       55666666777777654

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.11  E-value=2.1e-10  Score=92.62  Aligned_cols=71  Identities=24%  Similarity=0.378  Sum_probs=64.6

Q ss_pred             ccchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        355 VKDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       355 ~~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      ..+||.++|++..  .+..+|+++||++++++|||++...++.++..+...+..|++||++|+||.+|..|+-
T Consensus         3 ~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL   75 (173)
T PRK00294          3 TPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL   75 (173)
T ss_pred             CCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            3689999999986  5679999999999999999999887777788888999999999999999999999994

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.11  E-value=2.7e-09  Score=88.56  Aligned_cols=98  Identities=22%  Similarity=0.330  Sum_probs=87.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  317 (470)
                      .|..+...|++++|+.+|++++...|+.+. ...++.++|.++..+|++++|+..+++++...|+++.++..+|.++..+
T Consensus        41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  119 (172)
T PRK02603         41 DGMSAQADGEYAEALENYEEALKLEEDPND-RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR  119 (172)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhccch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            399999999999999999999998776432 3578999999999999999999999999999999999999999999998


Q ss_pred             CC--------------HHHHHHHHHHHHhcCCC
Q psy16214        318 GQ--------------YKECVIDAEKIYKMDNS  336 (470)
Q Consensus       318 g~--------------~~~A~~~~~~a~~~~p~  336 (470)
                      |+              +++|++++++++.++|+
T Consensus       120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence            88              57778888888888875

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.11  E-value=6e-07  Score=79.03  Aligned_cols=225  Identities=25%  Similarity=0.282  Sum_probs=150.2

Q ss_pred             cCCHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         17 LKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVS--LDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        17 ~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      .+.+..+...+..++...+.  ........+..+...+.+..+...+...+.  ..+.....+...+.++...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            46788888899988888876  378889999999999999999999999997  78888999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHH
Q psy16214         93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV---ASKTYKLMKAECLAHLNRLQ  169 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~~a~~~~~~~~~~  169 (470)
                      ..+..++...+.+..........           .+...++++.|+..+.+++...|   .........+..+...++++
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALG-----------ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE  184 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHH-----------HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHH
Confidence            99999999877763222111110           35556666666666666665554   23344444444455556666


Q ss_pred             HHHHHHHHHhhcCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        170 EAQEIANSILATDKQ-NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       170 ~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      .|+..+.+++...+. ....+..++.++...++++.|+..+..++...|.........            +..+...+.+
T Consensus       185 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  252 (291)
T COG0457         185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNL------------ALLLLELGRY  252 (291)
T ss_pred             HHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhH------------HHHHHHcCCH
Confidence            666666666666665 455555666666666666666666666665555522222222            3333344445


Q ss_pred             HHHHHHHHHHHhhccc
Q psy16214        249 QEAFDIYTEALKIDAR  264 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~  264 (470)
                      +++...+.+++...|.
T Consensus       253 ~~~~~~~~~~~~~~~~  268 (291)
T COG0457         253 EEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            5555555555555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.10  E-value=3.7e-10  Score=76.86  Aligned_cols=65  Identities=25%  Similarity=0.211  Sum_probs=60.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214         42 GNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP  106 (470)
Q Consensus        42 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  106 (470)
                      +.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.10  E-value=1.7e-08  Score=82.00  Aligned_cols=198  Identities=16%  Similarity=0.097  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214         73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK  152 (470)
Q Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  152 (470)
                      ..++..|..|-.+|-+.-|.-.|.+++.+.|+-+++...+|..            +...|+++.|.+.|+..++++|...
T Consensus        66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Y------------l~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY------------LTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHH------------HHhcccchHHHHHhhhHhccCCcch
Confidence            3445555555556666666666666666666655555555444            3334555555555555566666666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHH-HHHhhCCChHHHHHHHHHHHH
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQ-LLLKLAPDHAKAKETYKRAKL  231 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~l~~~p~~~~~~~~~~~~~~  231 (470)
                      .+..++|..++.-|++.-|.+.+.+-.+.+|++|---..+-.. ...-++.+|...+. ++...+.+. ..|..      
T Consensus       134 Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~-WG~~i------  205 (297)
T COG4785         134 YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQ-WGWNI------  205 (297)
T ss_pred             HHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhh-hhHHH------
Confidence            6666777777777777777777777777777776422222111 22334555555443 333333221 11111      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI---NINSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                               +-+-.|+..+ ...++++..-..++.   .....+++.+|..+...|+.++|...|+-++..+
T Consensus       206 ---------V~~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         206 ---------VEFYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             ---------HHHHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence                     1111122211 112222222211111   1134677888888888888888888888877654

>KOG0722|consensus

Probab=99.10  E-value=6e-11  Score=97.27  Aligned_cols=67  Identities=42%  Similarity=0.753  Sum_probs=60.8

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .++|.+|||.++++.++|.+|||+++++||||++++.+      ..+.|+.|+.||++|.|.+.|..||=.-|
T Consensus        33 enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e------~k~~F~~iAtayeilkd~e~rt~ydyald   99 (329)
T KOG0722|consen   33 ENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPE------SKKLFVKIATAYEILKDNETRTQYDYALD   99 (329)
T ss_pred             hhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCch------hhhhhhhhhcccccccchhhHHhHHHHhc
Confidence            68899999999999999999999999999999999832      33789999999999999999999996544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.09  E-value=2.5e-09  Score=79.22  Aligned_cols=96  Identities=34%  Similarity=0.523  Sum_probs=89.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA  316 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  316 (470)
                      ..|..+...|++++|+..++++++..|.+    ..++..+|.++...+++++|+..+++++...|.+..++..+|.++..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence            34899999999999999999999999984    46799999999999999999999999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhcCCC
Q psy16214        317 LGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       317 ~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .|++++|...+.++++..|.
T Consensus        81 ~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          81 LGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHhHHHHHHHHHHHHccCCC
Confidence            99999999999999998873

>PHA02624 large T antigen; Provisional

Probab=99.08  E-value=3e-10  Score=107.62  Aligned_cols=63  Identities=29%  Similarity=0.460  Sum_probs=57.7

Q ss_pred             cccccchhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhc
Q psy16214        352 RSEVKDYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY  423 (470)
Q Consensus       352 ~~~~~~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~y  423 (470)
                      ..+..++|++||+..++  +..+|+++||++++++|||++.+         +++|++|++||++|+|+.++.+|
T Consensus         7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd---------eekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624          7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD---------EEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc---------HHHHHHHHHHHHHHhcHHHhhhc
Confidence            34567899999999999  99999999999999999999654         56899999999999999999999

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.06  E-value=7.2e-09  Score=79.74  Aligned_cols=107  Identities=15%  Similarity=0.108  Sum_probs=97.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS---KGL   75 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~   75 (470)
                      ..+..++..|...+..|+|++|++.|+.+....|..   ..+.+.++.+|+..+++++|+..+++.++++|.++   .++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            467889999999999999999999999999998864   67899999999999999999999999999999874   588


Q ss_pred             HHHHHHHHHcCC---------------hHHHHHHHHHHHhcCCCChHH
Q psy16214         76 IRQIKCNIALGD---------------APTARSNLKALQELDPDNPAI  108 (470)
Q Consensus        76 ~~la~~~~~~g~---------------~~~A~~~~~~~l~~~p~~~~~  108 (470)
                      +..|.++..+..               ...|...|++++...|++.-+
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            999999999876               889999999999999998754

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.05  E-value=7.6e-09  Score=88.16  Aligned_cols=105  Identities=20%  Similarity=0.152  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIRQ   78 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l   78 (470)
                      +.+|+.|..++..|+|..|...|...++..|++   +.+++.+|.+++.+|+++.|...|..+++..|++   +++++.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            458999999999999999999999999999986   7899999999999999999999999999987765   6889999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214         79 IKCNIALGDAPTARSNLKALQELDPDNPAIA  109 (470)
Q Consensus        79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  109 (470)
                      |.|...+|+.++|...|+++++..|+...+.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            9999999999999999999999999988764

>PRK15331 chaperone protein SicA; Provisional

Probab=99.05  E-value=6.7e-09  Score=81.73  Aligned_cols=91  Identities=14%  Similarity=0.036  Sum_probs=86.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |.-++..|++++|...|+-....+|.++    +.+..||.|+..+++|++|+..|..+..++++++...+..|.|++.+|
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~----~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFYNP----DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            8899999999999999999999999954    559999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhc
Q psy16214        319 QYKECVIDAEKIYKM  333 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~  333 (470)
                      +.++|..+|+.+++.
T Consensus       120 ~~~~A~~~f~~a~~~  134 (165)
T PRK15331        120 KAAKARQCFELVNER  134 (165)
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999999983

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=99.04  E-value=3e-07  Score=77.81  Aligned_cols=171  Identities=15%  Similarity=0.177  Sum_probs=120.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH---HHHHHHH
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASK---TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD---AVFVRGL  194 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~  194 (470)
                      .+..+...++.|+|++|+..|+.+....|..+   .+.+.++.++++.+++++|+...++-+.++|++++   +++..|.
T Consensus        37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL  116 (254)
T COG4105          37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL  116 (254)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence            47788889999999999999999999987664   67888999999999999999999999999998865   6778888


Q ss_pred             HHhccC-----C---hHHHHHHHHHHHhhCCChHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy16214        195 CLYYDD-----K---MDLAVNHFQLLLKLAPDHAKAKETYKRAKL-----LKAKKEEGNEKFVAGKNQEAFDIYTEALKI  261 (470)
Q Consensus       195 ~~~~~g-----~---~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  261 (470)
                      +++..=     |   ..+|+..++..+...|++.-+.....++..     .......|..|.+.|.+..|+..++.+++.
T Consensus       117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~  196 (254)
T COG4105         117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence            876532     2   347888899999999998655443322211     112222355566666666666666666655


Q ss_pred             cccCccchHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214        262 DARNININSKLLHNRATVLFKMGKYNEAIAD  292 (470)
Q Consensus       262 ~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (470)
                      .|+... ...++..+..+|..+|-.++|...
T Consensus       197 y~~t~~-~~eaL~~l~eaY~~lgl~~~a~~~  226 (254)
T COG4105         197 YPDTSA-VREALARLEEAYYALGLTDEAKKT  226 (254)
T ss_pred             cccccc-hHHHHHHHHHHHHHhCChHHHHHH
Confidence            444332 234555555556666655555443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.04  E-value=1.6e-08  Score=97.72  Aligned_cols=130  Identities=12%  Similarity=0.068  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Q psy16214         88 APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ--GVASKTYKLMKAECLAHL  165 (470)
Q Consensus        88 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~  165 (470)
                      ...|+.+|+++++++|++..++..++.++.....+..    ....+...+.....+++..  .|..+.++..+|..+...
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~----~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~  433 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP----LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVK  433 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc
Confidence            4455555555555555555555544444322211110    0011234455555565553  777788898899999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHH
Q psy16214        166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA  222 (470)
Q Consensus       166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  222 (470)
                      |++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++..
T Consensus       434 g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        434 GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            999999999999999999 58899999999999999999999999999999998863

>KOG0714|consensus

Probab=99.04  E-value=4.7e-10  Score=103.20  Aligned_cols=69  Identities=57%  Similarity=0.879  Sum_probs=62.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .++|++|++...++..+|++||+++++.||||+++.   . +..++.+|++++++|++|+|+.+|..||.-.+
T Consensus         3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~---~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPS---P-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCC---c-hhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            589999999999999999999999999999999665   2 44566699999999999999999999999776

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=4.2e-10  Score=99.24  Aligned_cols=69  Identities=55%  Similarity=0.873  Sum_probs=63.0

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG  426 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~  426 (470)
                      ...++|.+||+...++..+|+++||++++++|||+++....    .++++|+.|++||++|+|+.+|..||..
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~----~a~~~f~~i~~Ay~vLsd~~~r~~yd~~   72 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK----VAEEKFKEINEAYEILSDPERRAEYDKI   72 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh----HHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence            34689999999999999999999999999999999987332    6889999999999999999999999983

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.03  E-value=3.4e-08  Score=95.43  Aligned_cols=87  Identities=9%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16214        248 NQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI  325 (470)
Q Consensus       248 ~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  325 (470)
                      ...+.....+++.+  +|.    .+.++..+|..+...|++++|...+++|+.++|+ ..+|..+|.++...|++++|++
T Consensus       400 l~~a~~~~~~a~al~~~~~----~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~  474 (517)
T PRK10153        400 LAALSTELDNIVALPELNV----LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAAD  474 (517)
T ss_pred             HHHHHHHHHHhhhcccCcC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence            34455555565554  344    3456777888888888888888888888888884 7888888888888888888988


Q ss_pred             HHHHHHhcCCChhH
Q psy16214        326 DAEKIYKMDNSREN  339 (470)
Q Consensus       326 ~~~~a~~~~p~~~~  339 (470)
                      .|++|+.++|....
T Consensus       475 ~~~~A~~L~P~~pt  488 (517)
T PRK10153        475 AYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHhcCCCCch
Confidence            88888888887443

>KOG1070|consensus

Probab=99.03  E-value=3.9e-07  Score=92.69  Aligned_cols=220  Identities=15%  Similarity=0.113  Sum_probs=175.7

Q ss_pred             CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCCCh----HHHHHHHHHHHHHHHHHHHH
Q psy16214         52 GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE-LDPDNP----AIAQESKALETMAKNFEGAS  126 (470)
Q Consensus        52 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~----~~~~~l~~~~~~~~~~~~a~  126 (470)
                      ++-.+..+.|++.+.-+|+..-.|...-.-++++++.++|.+..++++. +++...    .+|..+-.+...        
T Consensus      1438 ~~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~-------- 1509 (1710)
T KOG1070|consen 1438 SRAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA-------- 1509 (1710)
T ss_pred             ccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh--------
Confidence            3344567789999999999999999999999999999999999999986 444332    233222222111        


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214        127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  206 (470)
                          -|.-+...+.|+++.+.+ +...++..+..+|...+++++|.++++..++...+...+|..++..++..++-+.|.
T Consensus      1510 ----yG~eesl~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1510 ----YGTEESLKKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred             ----hCcHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHH
Confidence                134445566777776654 334567778899999999999999999999988888899999999999999999999


Q ss_pred             HHHHHHHhhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC
Q psy16214        207 NHFQLLLKLAPD--HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG  284 (470)
Q Consensus       207 ~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g  284 (470)
                      ..+.+|++.-|.  +.......            +..-++.|+.+.+..+|+..+...|.    ...+|.-....-.+.|
T Consensus      1585 ~lL~rAL~~lPk~eHv~~Iskf------------AqLEFk~GDaeRGRtlfEgll~ayPK----RtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKF------------AQLEFKYGDAERGRTLFEGLLSAYPK----RTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred             HHHHHHHhhcchhhhHHHHHHH------------HHHHhhcCCchhhHHHHHHHHhhCcc----chhHHHHHHHHHHccC
Confidence            999999999888  44444444            88889999999999999999999998    5677998899999999


Q ss_pred             CHHHHHHHHHHHHHhC
Q psy16214        285 KYNEAIADCTLALEKD  300 (470)
Q Consensus       285 ~~~~A~~~~~~al~~~  300 (470)
                      +.+.+...|++++.+.
T Consensus      1649 ~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1649 DIKYVRDLFERVIELK 1664 (1710)
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999999998874

>PRK11906 transcriptional regulator; Provisional

Probab=99.02  E-value=3.1e-08  Score=90.86  Aligned_cols=164  Identities=13%  Similarity=0.057  Sum_probs=126.4

Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHh---hcCCCChHHHHHHHHHHhcc---------CChHHHHHHHHHHHhhCCChH
Q psy16214        156 LMKAECLAHLNR---LQEAQEIANSIL---ATDKQNPDAVFVRGLCLYYD---------DKMDLAVNHFQLLLKLAPDHA  220 (470)
Q Consensus       156 ~~~a~~~~~~~~---~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~  220 (470)
                      +.+|...+..+.   ...|+.++.+++   .++|....++..++.|++..         .+..+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            556666555443   467889999999   89999999999999988643         234577788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                      .+...+            |.+....++++.|+..|++|+.++|+    .+.+|+..|.++...|+.++|++.++++++++
T Consensus       339 ~a~~~~------------g~~~~~~~~~~~a~~~f~rA~~L~Pn----~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        339 KILAIM------------GLITGLSGQAKVSHILFEQAKIHSTD----IASLYYYRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             HHHHHH------------HHHHHhhcchhhHHHHHHHHhhcCCc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            888877            88888888888888888888888888    56778888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCC
Q psy16214        301 PNYLKALSRRCKC-FHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       301 p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      |.-..+-...-++ .+-....++|+..|-+-.+...
T Consensus       403 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (458)
T PRK11906        403 PRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESES  438 (458)
T ss_pred             chhhHHHHHHHHHHHHcCCchhhhHHHHhhcccccc
Confidence            8876665555555 5556667778877766554433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=99.00  E-value=5e-06  Score=73.92  Aligned_cols=145  Identities=15%  Similarity=0.072  Sum_probs=90.9

Q ss_pred             CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214        167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG  246 (470)
Q Consensus       167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (470)
                      +...|.....+++++.|+....-..-+..++..|+..++-.+++.+.+..|.- .++.              ..++.+.|
T Consensus       244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-~ia~--------------lY~~ar~g  308 (531)
T COG3898         244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-DIAL--------------LYVRARSG  308 (531)
T ss_pred             ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-HHHH--------------HHHHhcCC
Confidence            35566666667777777777766667777777777777777777777766643 2221              11222333


Q ss_pred             CHHHHHHHHHH---HHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-CCHHH
Q psy16214        247 KNQEAFDIYTE---ALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL-GQYKE  322 (470)
Q Consensus       247 ~~~~A~~~~~~---al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~  322 (470)
                      +  .++.-+++   .-.+.|+    +......++..-+.-|++..|..-.+.+....|. ..++..++.+-... |+-.+
T Consensus       309 d--ta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~  381 (531)
T COG3898         309 D--TALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGK  381 (531)
T ss_pred             C--cHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHH
Confidence            3  23333333   2344555    3455666777777777777777777777777776 34566667666654 77777


Q ss_pred             HHHHHHHHHhc
Q psy16214        323 CVIDAEKIYKM  333 (470)
Q Consensus       323 A~~~~~~a~~~  333 (470)
                      +..++-++++-
T Consensus       382 vR~wlAqav~A  392 (531)
T COG3898         382 VRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHHHhcC
Confidence            77777777764

>KOG4642|consensus

Probab=99.00  E-value=1.1e-09  Score=90.05  Aligned_cols=100  Identities=34%  Similarity=0.465  Sum_probs=95.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.+.+.|+.++....|..|+.+|.++|.++|..+..+.+++.|++++.+++.+...+.++++++|+...+++.+|.+.
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcC
Q psy16214         83 IALGDAPTARSNLKALQELD  102 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~  102 (470)
                      .....+++|+..+.++..+.
T Consensus        89 l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HhhccccHHHHHHHHHHHHH
Confidence            99999999999999997643

>KOG1941|consensus

Probab=98.98  E-value=2.2e-07  Score=81.42  Aligned_cols=178  Identities=13%  Similarity=0.092  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNP-----DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK  227 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  227 (470)
                      .++.+++..+...-++.+++.+.+..+.+....+     .+...++.++..++.++++++.|+++++..-++.+....+ 
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl-  162 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL-  162 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee-
Confidence            4677888888888999999999888877644333     5777899999999999999999999998765544332211 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q psy16214        228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKD-  300 (470)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-  300 (470)
                           +-....|..+-...++++|+-+..+|..+...      +......+++.++.++..+|+.-.|.++++++.++. 
T Consensus       163 -----qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal  237 (518)
T KOG1941|consen  163 -----QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLAL  237 (518)
T ss_pred             -----ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence                 11122288999999999999999999876432      122245678899999999999999999999998762 


Q ss_pred             -----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        301 -----PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       301 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                           +.....+.-+|.+|...|+.+.|..-|+.|.....+
T Consensus       238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~  278 (518)
T KOG1941|consen  238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS  278 (518)
T ss_pred             HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence                 344677888999999999999999999999987643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.98  E-value=2.2e-08  Score=87.87  Aligned_cols=107  Identities=14%  Similarity=0.135  Sum_probs=95.8

Q ss_pred             HHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHH
Q psy16214        120 KNFEGASKA-FEANDYRTAMFYLDRAMDQGVAS---KTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVR  192 (470)
Q Consensus       120 ~~~~~a~~~-~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l  192 (470)
                      ..+..|..+ +..++|++|+..|+..+...|++   +.+++.+|.+|+..|++++|+..|.++++.+|++   +++++.+
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            346677766 56799999999999999999998   5799999999999999999999999999988875   7899999


Q ss_pred             HHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        193 GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       193 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      |.++...|++++|+..|+++++..|++..+....
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~  257 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQ  257 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence            9999999999999999999999999988765543

>KOG0720|consensus

Probab=98.97  E-value=8.3e-10  Score=99.08  Aligned_cols=68  Identities=35%  Similarity=0.641  Sum_probs=63.4

Q ss_pred             ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214        353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG  426 (470)
Q Consensus       353 ~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~  426 (470)
                      .+..+.|.+||+..++++.+|||.||++|..-||||+..      +.|++.|+.+..|||++||++||..||.-
T Consensus       232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~------~~A~Eafk~Lq~Afevig~~~kR~eYd~e  299 (490)
T KOG0720|consen  232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI------PRAEEAFKKLQVAFEVIGDSVKRKEYDLE  299 (490)
T ss_pred             hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC------hhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            346899999999999999999999999999999999986      57899999999999999999999999963

>KOG4555|consensus

Probab=98.96  E-value=5.4e-08  Score=72.23  Aligned_cols=100  Identities=22%  Similarity=0.287  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQIK   80 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~   80 (470)
                      ..+-..|..+...|+.+.|++.|.++|.+.|..+.+|.+++.++.-.|+.++|+..+++++++....    ..++...|.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            3466778999999999999999999999999999999999999999999999999999999985443    457889999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCC
Q psy16214         81 CNIALGDAPTARSNLKALQELDPD  104 (470)
Q Consensus        81 ~~~~~g~~~~A~~~~~~~l~~~p~  104 (470)
                      +|..+|+.+.|...|+.+-++...
T Consensus       124 lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  124 LYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHhCchHHHHHhHHHHHHhCCH
Confidence            999999999999999999887654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.95  E-value=2.2e-09  Score=73.83  Aligned_cols=65  Identities=20%  Similarity=0.200  Sum_probs=36.5

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214         15 YKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      +..|+|++|+..|++++..+|++..+++.+|.||+..|++++|...+++++..+|+++..+..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            34555555555555555555555555555555555555555555555555555555555444444

...

>KOG3081|consensus

Probab=98.94  E-value=1.3e-06  Score=73.60  Aligned_cols=262  Identities=15%  Similarity=0.117  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      .+|.. +.+|..|+|..++..-++.-... ........+..+|+.+|++..-+......-   .....+...++.....-
T Consensus        11 ~LF~i-Rn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e   85 (299)
T KOG3081|consen   11 ELFNI-RNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELE   85 (299)
T ss_pred             hHHHH-HHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCc
Confidence            34443 56677899999888877764443 667778888899999999877666554332   12234455555555555


Q ss_pred             CChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214         86 GDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH  164 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  164 (470)
                      ++.++-+..+...+........ .+           ....|..++..+++++|+..+...     .+.++...-..|+.+
T Consensus        86 ~~~~~~~~~l~E~~a~~~~~sn~i~-----------~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk  149 (299)
T KOG3081|consen   86 SNKKSILASLYELVADSTDGSNLID-----------LLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLK  149 (299)
T ss_pred             chhHHHHHHHHHHHHhhccchhHHH-----------HHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHH
Confidence            5555555544444332222221 22           234456688889999999877763     445666677888999


Q ss_pred             cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214        165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN  240 (470)
Q Consensus       165 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (470)
                      +.+.+-|...++++.+.+.+  ..+..+|..+..    .++...|.-+|+..-...|..+......            +.
T Consensus       150 ~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~------------Av  215 (299)
T KOG3081|consen  150 MHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQ------------AV  215 (299)
T ss_pred             HHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccH------------HH
Confidence            99999999999999887654  344445554432    3468889999999888666666666555            89


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHH
Q psy16214        241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAI-ADCTLALEKDPNYLKA  306 (470)
Q Consensus       241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~  306 (470)
                      +++.+++|++|...++.++..++++    +..+.|+-.+-...|...++. ..+.+....+|+++.+
T Consensus       216 ~~l~~~~~eeAe~lL~eaL~kd~~d----petL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  216 CHLQLGRYEEAESLLEEALDKDAKD----PETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHhcCHHHHHHHHHHHHhccCCC----HHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            9999999999999999999999995    456889888888888876655 4556666677887644

>KOG0551|consensus

Probab=98.94  E-value=2e-08  Score=86.89  Aligned_cols=104  Identities=36%  Similarity=0.561  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                      ..+.+.|+-|++.++|..|+.+|.+.|+....++.+++.+|.|+|.|...+|+|..|+..|.+++.++|++..++++-|.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            34566799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        313 CFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      |++.+.++.+|+.+++..+.++..
T Consensus       162 c~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999999999999999888754

>KOG2053|consensus

Probab=98.94  E-value=4e-05  Score=75.36  Aligned_cols=206  Identities=15%  Similarity=0.020  Sum_probs=134.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      -....++|.+|+....+.++..|+..-+....|.++.++|+.++|..+++..-...+++...+-.+-.||..++++++|.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHH
Confidence            34677899999999999999999999999999999999999999998888877788888899999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHH----HHHHHHHhc----------------------------CCHHHHHHH
Q psy16214         93 SNLKALQELDPDNPAIAQESKALETMAKNF----EGASKAFEA----------------------------NDYRTAMFY  140 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~----~~a~~~~~~----------------------------~~~~~A~~~  140 (470)
                      .+|++++..+|. .+....+-..+...+.+    ..|+.+++.                            --..-|...
T Consensus        98 ~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen   98 HLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            999999999999 55554444444333322    223333221                            001112222


Q ss_pred             HHHHHHhC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHH-Hhh-cCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC
Q psy16214        141 LDRAMDQG-VASK-TYKLMKAECLAHLNRLQEAQEIANS-ILA-TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA  216 (470)
Q Consensus       141 ~~~~l~~~-p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~-~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  216 (470)
                      .++.++.. +-.. .=....-.++...|++++|...+.. ... ..+.+...-......+...+++.+-.+...+++...
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            33333332 1110 0011123344555666666666622 222 222333333344455556666666666666666666


Q ss_pred             CCh
Q psy16214        217 PDH  219 (470)
Q Consensus       217 p~~  219 (470)
                      +++
T Consensus       257 ~Dd  259 (932)
T KOG2053|consen  257 NDD  259 (932)
T ss_pred             Ccc
Confidence            665

>KOG0545|consensus

Probab=98.91  E-value=4.1e-08  Score=81.22  Aligned_cols=118  Identities=27%  Similarity=0.337  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--------cccCccc------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214        232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKI--------DARNINI------NSKLLHNRATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (470)
                      ......+|+-++..|+|.+|...|..|+..        .|.++..      ...++.|.+.|++..|+|-++++.+..++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            334455699999999999999999998732        4554432      24678899999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHH
Q psy16214        298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS--RENHNFLEEAKRL  349 (470)
Q Consensus       298 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~l~~~~~~  349 (470)
                      ..+|.+..+++.+|.++...=+..+|...+.++++++|+  +-+...|+..+..
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r  311 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENR  311 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998  4445555444433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.91  E-value=4.8e-08  Score=74.17  Aligned_cols=97  Identities=18%  Similarity=0.014  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---CHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR---FSKGLIR   77 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~   77 (470)
                      |+.+++.|..+-..|+.++|+.+|++++...+.   ...+++.+|.++..+|++++|+..+++++...|+   +......
T Consensus         1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            467899999999999999999999999997544   3678999999999999999999999999999888   7788888


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHh
Q psy16214         78 QIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        78 la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      ++.++...|++++|+..+..++.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999988764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.90  E-value=5.1e-09  Score=71.97  Aligned_cols=67  Identities=24%  Similarity=0.326  Sum_probs=61.0

Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214         48 YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA  114 (470)
Q Consensus        48 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  114 (470)
                      ++..|++++|+..|++++..+|++..+++.+|.||...|++++|...+.+++..+|+++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3678999999999999999999999999999999999999999999999999999998887765554

...

>KOG0376|consensus

Probab=98.90  E-value=3.9e-09  Score=96.12  Aligned_cols=116  Identities=32%  Similarity=0.479  Sum_probs=109.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      ..++.+...|+.++..+.|+.|+..|.+||+++|+.+..+.+++.+++..+++..|+.++.++++++|....+|++.|.+
T Consensus         2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a   81 (476)
T KOG0376|consen    2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTA   81 (476)
T ss_pred             chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHH
Confidence            35778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      ...++.+.+|...|+....+.|+++.+...+..+..
T Consensus        82 ~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   82 VMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            999999999999999999999999998776666643

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.90  E-value=1.6e-08  Score=88.71  Aligned_cols=64  Identities=30%  Similarity=0.517  Sum_probs=56.5

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC--ccHHhhHHHHHHHHHHHHHHhhcCCh
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN--ATQAQKLEQEKLFKEVGEAYGILSDP  417 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~--~~~~~~~~~~~~~~~i~~ay~~l~d~  417 (470)
                      ...++|++||+..+++.++||++||+++++||||+...  .+++..+.++++|++|++||++|+..
T Consensus       198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~  263 (267)
T PRK09430        198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ  263 (267)
T ss_pred             cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence            44789999999999999999999999999999999754  35666778999999999999999753

>KOG1070|consensus

Probab=98.89  E-value=2.1e-06  Score=87.67  Aligned_cols=216  Identities=13%  Similarity=0.085  Sum_probs=181.0

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCC----HHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214         22 KALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-DPRF----SKGLIRQIKCNIALGDAPTARSNLK   96 (470)
Q Consensus        22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~g~~~~A~~~~~   96 (470)
                      +..+-|++.+..+|+++..|...-.-.+.+++.++|.+.+++|+.. ++..    ...|..+-.....-|.-+...+.|+
T Consensus      1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred             cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence            4466788889999999999999999999999999999999999974 4443    2344444444455566677788899


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16214         97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN  176 (470)
Q Consensus        97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~  176 (470)
                      +|.+.... ..++..|..+            |-..+.+++|.++++..++.......+|..++..++..++-+.|...+.
T Consensus      1522 RAcqycd~-~~V~~~L~~i------------y~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~ 1588 (1710)
T KOG1070|consen 1522 RACQYCDA-YTVHLKLLGI------------YEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLK 1588 (1710)
T ss_pred             HHHHhcch-HHHHHHHHHH------------HHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence            98875422 2333333333            4455788899999999999998999999999999999999999999999


Q ss_pred             HHhhcCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q psy16214        177 SILATDKQ--NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDI  254 (470)
Q Consensus       177 ~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~  254 (470)
                      ++++.-|.  +.+..-..|.+-++.|+.+.+...|+..+..+|.-.+.|..+            ...-.+.++.+-+..+
T Consensus      1589 rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VY------------id~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1589 RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVY------------IDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred             HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHH------------HHHHHccCCHHHHHHH
Confidence            99999998  788888999999999999999999999999999999999998            8888899999999999


Q ss_pred             HHHHHhhc
Q psy16214        255 YTEALKID  262 (470)
Q Consensus       255 ~~~al~~~  262 (470)
                      |++++.+.
T Consensus      1657 feRvi~l~ 1664 (1710)
T KOG1070|consen 1657 FERVIELK 1664 (1710)
T ss_pred             HHHHHhcC
Confidence            99998764

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.89  E-value=2.4e-05  Score=69.76  Aligned_cols=273  Identities=18%  Similarity=0.124  Sum_probs=137.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCc--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCC
Q psy16214         11 GNTQYKLKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGD   87 (470)
Q Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~   87 (470)
                      |.+.-..|+-..|...-.++-++-..  .+.++..-+.+-+..|+++.|.+-|+..+. +|.. .-.+..|-.--..+|.
T Consensus        91 GliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~Ga  169 (531)
T COG3898          91 GLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGA  169 (531)
T ss_pred             hhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhccc
Confidence            44444556666666665555433222  234444455666666777777776665543 3321 1112222223345666


Q ss_pred             hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcC
Q psy16214         88 APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT-YKLMKAECLAHLN  166 (470)
Q Consensus        88 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~~~~  166 (470)
                      .+.|+.+-+++....|.-+.++...-..            ....|+|+.|+++++......--... +-..+        
T Consensus       170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~------------r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~r--------  229 (531)
T COG3898         170 REAARHYAERAAEKAPQLPWAARATLEA------------RCAAGDWDGALKLVDAQRAAKVIEKDVAERSR--------  229 (531)
T ss_pred             HHHHHHHHHHHHhhccCCchHHHHHHHH------------HHhcCChHHHHHHHHHHHHHHhhchhhHHHHH--------
Confidence            7777777777666666655544222211            23345555555444433222100000 00000        


Q ss_pred             CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214        167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG  246 (470)
Q Consensus       167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (470)
                                         .-.+...+... ..-+...|...-.+++++.|+....-..-            +..++..|
T Consensus       230 -------------------AvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~A------------Aralf~d~  277 (531)
T COG3898         230 -------------------AVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVA------------ARALFRDG  277 (531)
T ss_pred             -------------------HHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHH------------HHHHHhcc
Confidence                               00111111111 12335566666667777777766655544            66777777


Q ss_pred             CHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Q psy16214        247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT---LALEKDPNYLKALSRRCKCFHALGQYKEC  323 (470)
Q Consensus       247 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~---~al~~~p~~~~~~~~la~~~~~~g~~~~A  323 (470)
                      +..++-.+++.+.+..|..     .+    +.+|....--+.++.-++   +...+.|++.+..+.++..-+.-|++..|
T Consensus       278 ~~rKg~~ilE~aWK~ePHP-----~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~A  348 (531)
T COG3898         278 NLRKGSKILETAWKAEPHP-----DI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAA  348 (531)
T ss_pred             chhhhhhHHHHHHhcCCCh-----HH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHH
Confidence            7777777777777666641     11    223332222223333333   33345677777777777777777777777


Q ss_pred             HHHHHHHHhcCCChhHHHHHHH
Q psy16214        324 VIDAEKIYKMDNSRENHNFLEE  345 (470)
Q Consensus       324 ~~~~~~a~~~~p~~~~~~~l~~  345 (470)
                      ..--+.+..+.|...+.-++..
T Consensus       349 Ra~Aeaa~r~~pres~~lLlAd  370 (531)
T COG3898         349 RAKAEAAAREAPRESAYLLLAD  370 (531)
T ss_pred             HHHHHHHhhhCchhhHHHHHHH
Confidence            7777777777776444444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.88  E-value=7.6e-08  Score=88.88  Aligned_cols=120  Identities=21%  Similarity=0.318  Sum_probs=103.8

Q ss_pred             HHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHH
Q psy16214        192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSK  271 (470)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  271 (470)
                      +-.++...++++.|+..+++..+.+|+.   ...+            +.++...++-.+|+..+.+++...|.+    +.
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pev---~~~L------------A~v~l~~~~E~~AI~ll~~aL~~~p~d----~~  235 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPEV---AVLL------------ARVYLLMNEEVEAIRLLNEALKENPQD----SE  235 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCcH---HHHH------------HHHHHhcCcHHHHHHHHHHHHHhCCCC----HH
Confidence            3444556788999999999999988863   3334            888888899999999999999999884    66


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                      ++...+..+...++++.|+...++++.+.|++...|+.|+.+|..+|++++|+..+..+
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            78889999999999999999999999999999999999999999999999999877733

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2300|consensus

Probab=98.88  E-value=6e-05  Score=69.09  Aligned_cols=196  Identities=16%  Similarity=0.075  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHHHHHHhC------CCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHhhc---CCC-------ChH
Q psy16214        132 NDYRTAMFYLDRAMDQG------VASK--------TYKLMKAECLAHLNRLQEAQEIANSILAT---DKQ-------NPD  187 (470)
Q Consensus       132 ~~~~~A~~~~~~~l~~~------p~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~-------~~~  187 (470)
                      |-+++|.++-++++...      |...        ..+..++.|-.-.|++.+|++....+.+.   .|.       .+.
T Consensus       289 gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~  368 (629)
T KOG2300|consen  289 GYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQ  368 (629)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHH
Confidence            55666666666666441      1111        12334555666677777777776665543   333       244


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214        188 AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN  267 (470)
Q Consensus       188 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  267 (470)
                      +.+.+|......+.++.|...|..+++....... +        .....+.+.+|...++-+.-.+.++   .+.|.+..
T Consensus       369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-~--------a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~  436 (629)
T KOG2300|consen  369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-Q--------AFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTN  436 (629)
T ss_pred             HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH-H--------HHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCC
Confidence            5667777777777788888887777765432211 1        1111234888888776555444443   34444321


Q ss_pred             ------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        268 ------INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       268 ------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                            ..+.+++..|...+.++++.+|...+.+.++...-      ....+..++.+....|+..++.+..+-++.+..
T Consensus       437 s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk  516 (629)
T KOG2300|consen  437 SLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK  516 (629)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence                  13466777888899999999999999999987521      145567789999999999999999988888765


Q ss_pred             C-hhH
Q psy16214        336 S-REN  339 (470)
Q Consensus       336 ~-~~~  339 (470)
                      . +++
T Consensus       517 Ki~Di  521 (629)
T KOG2300|consen  517 KIPDI  521 (629)
T ss_pred             cCCCc
Confidence            4 444

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=98.88  E-value=4.3e-09  Score=77.50  Aligned_cols=52  Identities=31%  Similarity=0.460  Sum_probs=46.2

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS  415 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~  415 (470)
                      ..++|++||+..+++.++|+++||++++++|||+..+         ...|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs---------~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS---------TYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999998543         346889999999983

>KOG1308|consensus

Probab=98.87  E-value=6.4e-09  Score=90.34  Aligned_cols=111  Identities=28%  Similarity=0.398  Sum_probs=100.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH  315 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  315 (470)
                      ...+.-.+..|.++.|++.|..++.++|.    .+.++..++.+++++++...|+..|..++.++|+...-+-.++.+..
T Consensus       118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~----~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r  193 (377)
T KOG1308|consen  118 KVQASEALNDGEFDTAIELFTSAIELNPP----LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER  193 (377)
T ss_pred             HHHHHHHhcCcchhhhhcccccccccCCc----hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence            33477778899999999999999999999    56779999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214        316 ALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLL  350 (470)
Q Consensus       316 ~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~  350 (470)
                      .+|++++|..++..+++++-+.++...|.+..-..
T Consensus       194 llg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a  228 (377)
T KOG1308|consen  194 LLGNWEEAAHDLALACKLDYDEANSATLKEVFPNA  228 (377)
T ss_pred             HhhchHHHHHHHHHHHhccccHHHHHHHHHhccch
Confidence            99999999999999999998888877776654433

>KOG3617|consensus

Probab=98.87  E-value=1.1e-05  Score=78.28  Aligned_cols=296  Identities=15%  Similarity=0.101  Sum_probs=170.6

Q ss_pred             hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHH------------HHHHhcCCCCHHHHHHHHHHHH
Q psy16214         16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA------------KLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~~   83 (470)
                      ..|+.+.|.+..+-+     .+..+|-++|....+..+.+-|.-++            +++.+ +|+  +.-...|.+..
T Consensus       740 tiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~--e~eakvAvLAi  811 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE--EDEAKVAVLAI  811 (1416)
T ss_pred             EeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc--chhhHHHHHHH
Confidence            346666666555433     23456667776666666655554332            23322 332  22233455556


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--------------------HHHHHHHhcCCHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF--------------------EGASKAFEANDYRTAMFYLDR  143 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~A~~~~~~  143 (470)
                      .+|-.++|...|.+.-..        ..+..++...+.+                    ..|..+-..++.+.|+++|++
T Consensus       812 eLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK  883 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEK  883 (1416)
T ss_pred             HHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence            666677777666665432        2222233222222                    333333344666677776664


Q ss_pred             H----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhh---------------------cC
Q psy16214        144 A----------MDQGVA----------SKTYKLMKAECLAHLNRLQEAQEIANSILA---------------------TD  182 (470)
Q Consensus       144 ~----------l~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~---------------------~~  182 (470)
                      +          +..+|.          ++..|..-|..+...|+.+.|+.+|..+-.                     ..
T Consensus       884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e  963 (1416)
T KOG3617|consen  884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE  963 (1416)
T ss_pred             cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence            3          333443          345666778888899999999999987633                     23


Q ss_pred             CCChHHHHHHHHHHhccCChHHHHHHHHHHHh------hCCChHH--HHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Q psy16214        183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK------LAPDHAK--AKETYKRAKLLKAKKEEGNEKFVAG-KNQEAFD  253 (470)
Q Consensus       183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~  253 (470)
                      ..+..+.+.+|..|...|++.+|+..|.++-.      +..++..  -...+.....-......+..|...| +...|+.
T Consensus       964 sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVm 1043 (1416)
T KOG3617|consen  964 SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVM 1043 (1416)
T ss_pred             cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHH
Confidence            34566889999999999999999999887643      3322211  1111111111111112233333343 5555555


Q ss_pred             HHHHH------H-----------------hhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHh-----
Q psy16214        254 IYTEA------L-----------------KIDARNININSKLLHNRATVLFKMGKYNEAIADCTL------ALEK-----  299 (470)
Q Consensus       254 ~~~~a------l-----------------~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------al~~-----  299 (470)
                      +|.+|      +                 .++|.   ..+.++..-+..+....+|++|...+-.      |+++     
T Consensus      1044 LYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~---sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1044 LYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG---SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred             HHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC---CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            55443      1                 12232   2466777778888888899998876543      4443     


Q ss_pred             -----------CCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        300 -----------DPN---------YLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       300 -----------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                                 .|.         -..++..+|.+..++|.|..|.+-|.+|
T Consensus      1121 v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1121 VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence                       111         1467888999999999999998888765

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.87  E-value=1.3e-08  Score=71.01  Aligned_cols=69  Identities=25%  Similarity=0.392  Sum_probs=46.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214         11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      ...++..++|++|+.++++++..+|+++..+..+|.++..+|++.+|+..++++++..|+++.+...++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            345666677777777777777777777777777777777777777777777777777776665554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.87  E-value=8.5e-08  Score=81.86  Aligned_cols=101  Identities=15%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRCKCF  314 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~  314 (470)
                      .+.-++..|+|..|...|..-++..|++.. .+.++++||.+++.+|++++|...|..+++..|++   +++++.+|.|.
T Consensus       147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~  225 (262)
T COG1729         147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL  225 (262)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence            388889999999999999999999998776 48999999999999999999999999999988776   78999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCChhH
Q psy16214        315 HALGQYKECVIDAEKIYKMDNSREN  339 (470)
Q Consensus       315 ~~~g~~~~A~~~~~~a~~~~p~~~~  339 (470)
                      ..+|+.++|...|+++++..|..+.
T Consensus       226 ~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         226 GRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            9999999999999999999998443

>KOG4642|consensus

Probab=98.86  E-value=1.4e-08  Score=83.68  Aligned_cols=112  Identities=26%  Similarity=0.380  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                      ....+.|+.++...+|..|+.+|.++|.++|..+    ..|.+++.|++++++++.+...+.+++++.|+...+++.+|.
T Consensus        11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~----~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~   86 (284)
T KOG4642|consen   11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA----SYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQ   86 (284)
T ss_pred             HHHHhccccccchhhhchHHHHHHHHHhcCCCcc----hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHH
Confidence            3445669999999999999999999999999954    459999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcC------CChhHHHHHHHHHH
Q psy16214        313 CFHALGQYKECVIDAEKIYKMD------NSRENHNFLEEAKR  348 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~l~~~~~  348 (470)
                      +++....+++|+..++++..+.      +..++...|..++.
T Consensus        87 ~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~  128 (284)
T KOG4642|consen   87 WLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKK  128 (284)
T ss_pred             HHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Confidence            9999999999999999997653      22677777777654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.85  E-value=1.4e-07  Score=87.09  Aligned_cols=122  Identities=14%  Similarity=0.144  Sum_probs=106.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK  235 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  235 (470)
                      ..+..++...++++.|+..++++.+.+|+   +...++.++...++..+|+..+.+++...|.+...+...         
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q---------  240 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ---------  240 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH---------
Confidence            34556667789999999999999988764   667789999999999999999999999999997777666         


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA  296 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (470)
                         +..+...++++.|+.+.++++...|+    ....|..|+.+|..+|+++.|+..++.+
T Consensus       241 ---a~fLl~k~~~~lAL~iAk~av~lsP~----~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  241 ---AEFLLSKKKYELALEIAKKAVELSPS----EFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             ---HHHHHhcCCHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence               99999999999999999999999999    4567999999999999999999877743

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.82  E-value=6.2e-09  Score=92.96  Aligned_cols=77  Identities=32%  Similarity=0.543  Sum_probs=72.3

Q ss_pred             chhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcCCC
Q psy16214        357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDS  433 (470)
Q Consensus       357 ~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~~~  433 (470)
                      +-|++||+..+.+..+||++||++..++||||.+.-.++.+.+.|++++.|+.||+.|+|+..|+.|-..+.|++++
T Consensus        99 DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd~pQ  175 (610)
T COG5407          99 DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPDSPQ  175 (610)
T ss_pred             ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCCCCc
Confidence            56999999999999999999999999999999988788999999999999999999999999999999988887763

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.81  E-value=2.9e-08  Score=69.28  Aligned_cols=68  Identities=26%  Similarity=0.384  Sum_probs=63.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214         45 AACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES  112 (470)
Q Consensus        45 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  112 (470)
                      ..+|+..+++++|+..+++++.++|+++..+..+|.++..+|++.+|+..++++++..|+++.+....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999998875433

>KOG0551|consensus

Probab=98.81  E-value=2.8e-08  Score=85.90  Aligned_cols=106  Identities=34%  Similarity=0.490  Sum_probs=96.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC---Cc-hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC---PN-VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR   77 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (470)
                      +.|+.+...|+.+++.++|..|+..|++.|+..   |+ ++..|.++|.|.+.+|+|..|+..+.+++.++|.+..++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            357889999999999999999999999999874   33 47889999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCChH
Q psy16214         78 QIKCNIALGDAPTARSNLKALQELDPDNPA  107 (470)
Q Consensus        78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  107 (470)
                      -|.|++.+.++.+|...++..+.++.....
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~  188 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKK  188 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            999999999999999999998876654433

>KOG2471|consensus

Probab=98.79  E-value=1.5e-06  Score=79.24  Aligned_cols=320  Identities=16%  Similarity=0.045  Sum_probs=193.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHH-hhcCCc--------hhHHHHHHHHHHHHcCChHHHHHHHHHHHh-------
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEA-ISVCPN--------VAAYYGNRAACYMMLGMYTYALDDAKLAVS-------   66 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a-l~~~p~--------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------   66 (470)
                      ++..++.+...++..|+|.+|.+.+... |...|.        .-..|.++|.+++++|.|.-+..+|.+|++       
T Consensus       239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             CcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence            4667889999999999999999988654 222232        234678999999999999999999999996       


Q ss_pred             --cCC---------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH---HHHHHH---
Q psy16214         67 --LDP---------RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE---GASKAF---  129 (470)
Q Consensus        67 --~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~---~a~~~~---  129 (470)
                        +.|         ...+..++.|..|...|++-.|.++|.++....-.+|..|..++.+-.....-.   ......   
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~  398 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRS  398 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccc
Confidence              112         246789999999999999999999999999999999999999998865432111   100000   


Q ss_pred             -------hcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH-----cCCHHHHHHHHHHH----------------
Q psy16214        130 -------EANDYRTAMFYLDRAMDQGVA---SKTYKLMKAECLAH-----LNRLQEAQEIANSI----------------  178 (470)
Q Consensus       130 -------~~~~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~----------------  178 (470)
                             .+|+-...+..-+.... .|.   -+..-...|.+..+     ...-..--..+.-+                
T Consensus       399 ~i~~~vig~g~rr~~m~~~nt~~~-~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~  477 (696)
T KOG2471|consen  399 EIRVHVIGKGNRRQLMIEENTYVE-LAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGN  477 (696)
T ss_pred             cceeeeecccchhheeecccceec-cccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccCCCCcCCCCC
Confidence                   00110000000000000 000   01111112222211     11100000000000                


Q ss_pred             -------------hhcCCCCh-----------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214        179 -------------LATDKQNP-----------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA  234 (470)
Q Consensus       179 -------------l~~~p~~~-----------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  234 (470)
                                   +...|+.+           .++-..+.+-..+|+.-.|+..-.+.+.. |+-..++..++.+     
T Consensus       478 ~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHi-----  551 (696)
T KOG2471|consen  478 TTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHI-----  551 (696)
T ss_pred             CCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHH-----
Confidence                         00001111           23455666778899999999999888875 3444444444322     


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh-----------------------hccc----------Cc-cchHHHHHHHHHHH
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALK-----------------------IDAR----------NI-NINSKLLHNRATVL  280 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~-----------------------~~p~----------~~-~~~~~~~~~la~~~  280 (470)
                        -.|.++....+..+|..++.--+-                       ++|.          .+ .....+++++|.++
T Consensus       552 --YAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~  629 (696)
T KOG2471|consen  552 --YAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAAL  629 (696)
T ss_pred             --HHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHH
Confidence              225666677778888777654220                       0110          00 01235677888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16214        281 FKMGKYNEAIADCTLALEKDP--NYLKALSRRCKCFHALGQYKECVIDAEKIY  331 (470)
Q Consensus       281 ~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  331 (470)
                      .-+|++++|..++..+..+-|  ..+++....-.+-+.+|+...|...+++..
T Consensus       630 alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~  682 (696)
T KOG2471|consen  630 ALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT  682 (696)
T ss_pred             HHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence            888888888888888877766  456666666666677788888877776653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.79  E-value=2.8e-07  Score=71.03  Aligned_cols=101  Identities=19%  Similarity=0.163  Sum_probs=91.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRCKC  313 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~  313 (470)
                      ..|...++.|+|.+|++.|+......|..+. ...+...++.+|++.+++++|+..+++-++++|++   ..+++.+|.+
T Consensus        15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            3499999999999999999999999988665 46889999999999999999999999999999988   5689999999


Q ss_pred             HHHhCC---------------HHHHHHHHHHHHhcCCChh
Q psy16214        314 FHALGQ---------------YKECVIDAEKIYKMDNSRE  338 (470)
Q Consensus       314 ~~~~g~---------------~~~A~~~~~~a~~~~p~~~  338 (470)
                      +.....               ..+|...|+++++..|+++
T Consensus        94 ~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen   94 YYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence            999877               8899999999999999844

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.78  E-value=2.5e-06  Score=67.85  Aligned_cols=169  Identities=15%  Similarity=0.120  Sum_probs=111.2

Q ss_pred             CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh-hCCChHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy16214        167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK-LAPDHAKAKETYKRAKLLKAKKEEGNEKFVA  245 (470)
Q Consensus       167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (470)
                      +.+.......+.+...|. ..-.+.+|..+...|++.+|...|++++. +..+++.....+            ++..+..
T Consensus        71 dP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLgl------------A~Aqfa~  137 (251)
T COG4700          71 DPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGL------------AQAQFAI  137 (251)
T ss_pred             ChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHH------------HHHHHhh
Confidence            444444444455555553 33456677777777888888888777776 445555555555            7777777


Q ss_pred             CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Q psy16214        246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI  325 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  325 (470)
                      +++..|...+++..+.+|.-.  .+.....+|.++...|++.+|...|+.++...|. +.+....+..+.++|+..+|..
T Consensus       138 ~~~A~a~~tLe~l~e~~pa~r--~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         138 QEFAAAQQTLEDLMEYNPAFR--SPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             ccHHHHHHHHHHHhhcCCccC--CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence            888888888887777766533  2344666788888888888888888888888777 6777778888888887777665


Q ss_pred             HHHHH----HhcCCC--hhHHHHHHHHHHHhh
Q psy16214        326 DAEKI----YKMDNS--RENHNFLEEAKRLLK  351 (470)
Q Consensus       326 ~~~~a----~~~~p~--~~~~~~l~~~~~~~~  351 (470)
                      -+..+    .+-.|.  ...+++++.+-..++
T Consensus       215 q~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~  246 (251)
T COG4700         215 QYVAVVDTAKRSRPHYRKHHREWIKTANERLK  246 (251)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            55443    333332  444555555544443

>KOG2053|consensus

Probab=98.77  E-value=3.5e-05  Score=75.79  Aligned_cols=227  Identities=17%  Similarity=0.078  Sum_probs=168.0

Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         49 MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA  128 (470)
Q Consensus        49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  128 (470)
                      ...+++.+|+..+.+.++..|+...+....|.++.++|+.++|..+++..-...+++......+..+            +
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~------------y   87 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV------------Y   87 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH------------H
Confidence            4678999999999999999999999999999999999999999988888877888877766666665            4


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHH-HHHHhccCChH----
Q psy16214        129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVR-GLCLYYDDKMD----  203 (470)
Q Consensus       129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~----  203 (470)
                      .+.+++++|+.+|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|+++-.+... ..+.......+    
T Consensus        88 ~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~  166 (932)
T KOG2053|consen   88 RDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLD  166 (932)
T ss_pred             HHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCccccc
Confidence            5567888999999999999999 88888888999999998877666666667788887654444 33333333333    


Q ss_pred             -----HHHHHHHHHHhhC-CChHHH-HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhcccCccchHHHHHH
Q psy16214        204 -----LAVNHFQLLLKLA-PDHAKA-KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL-KIDARNININSKLLHN  275 (470)
Q Consensus       204 -----~A~~~~~~~l~~~-p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~~~  275 (470)
                           -|...+++.++.. +-...+ ...+            -.++..++++++|...+..-+ +..+.-   +...-..
T Consensus       167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly------------l~iL~~~~k~~eal~~l~~~la~~l~~~---~~~l~~~  231 (932)
T KOG2053|consen  167 PILLALAEKMVQKLLEKKGKIESEAEIILY------------LLILELQGKYQEALEFLAITLAEKLTSA---NLYLENK  231 (932)
T ss_pred             chhHHHHHHHHHHHhccCCccchHHHHHHH------------HHHHHhcccHHHHHHHHHHHHHHhcccc---chHHHHH
Confidence                 2444455555544 211111 1111            456677899999999995433 333321   2233445


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214        276 RATVLFKMGKYNEAIADCTLALEKDPNY  303 (470)
Q Consensus       276 la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (470)
                      ....+..++++.+-.+...+++...+++
T Consensus       232 ~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  232 KLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            6777888999999999999999999997

>KOG4555|consensus

Probab=98.77  E-value=3.8e-07  Score=67.82  Aligned_cols=94  Identities=23%  Similarity=0.270  Sum_probs=86.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----LKALSRRCKCF  314 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~  314 (470)
                      |..+...|+.+.|++.|.+++.+.|.    .+.+|.+++.++.-+|+.++|++.+++++++....    ..++..+|.+|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~----raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPE----RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhccc----chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            88899999999999999999999999    67789999999999999999999999999996443    56789999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCC
Q psy16214        315 HALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       315 ~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ..+|+-+.|...|+.+.++...
T Consensus       126 Rl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHhCchHHHHHhHHHHHHhCCH
Confidence            9999999999999999988764

>KOG2471|consensus

Probab=98.76  E-value=2.1e-06  Score=78.31  Aligned_cols=290  Identities=13%  Similarity=0.072  Sum_probs=194.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHH-HHcCChHHHHHHHHHHHhc-----CC----------
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACY-MMLGMYTYALDDAKLAVSL-----DP----------   69 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~-~~~g~~~~A~~~~~~al~~-----~p----------   69 (470)
                      .+...+...+..++|+..++.++..-.++.++..++++++.+. +..|.+... ..++....+     .|          
T Consensus        19 ~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~-~ll~el~aL~~~~~~~~~~~~gld~~   97 (696)
T KOG2471|consen   19 SLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHS-VLLKELEALTADADAPGDVSSGLSLK   97 (696)
T ss_pred             HHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhH-HHHHHHHHHHHhhccccchhcchhhh
Confidence            4556677788899999999999999888887777777777654 445543322 222222111     11          


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC----ChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214         70 RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD----NPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRA  144 (470)
Q Consensus        70 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  144 (470)
                      .....+++.|.+++....+..|++........-..    ... .......++......++|..++.         ++.+.
T Consensus        98 ~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~---------vL~~~  168 (696)
T KOG2471|consen   98 QGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLN---------VLAEI  168 (696)
T ss_pred             cchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
Confidence            23457788899998888888888877665542211    111 11111122222222333332221         11111


Q ss_pred             HHh------------------CC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy16214        145 MDQ------------------GV------------ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL  194 (470)
Q Consensus       145 l~~------------------~p------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  194 (470)
                      +..                  -|            -...+.......+++..+...+....+.+.....+++.++...+.
T Consensus       169 ~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq  248 (696)
T KOG2471|consen  169 EAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQ  248 (696)
T ss_pred             HHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHH
Confidence            111                  01            011344556677788888888888888888888899999999999


Q ss_pred             HHhccCChHHHHHHHHHH-HhhCCC------hHH--HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hc--
Q psy16214        195 CLYYDDKMDLAVNHFQLL-LKLAPD------HAK--AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK-ID--  262 (470)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~-l~~~p~------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~--  262 (470)
                      .++..|++.+|.+.+... +...|.      -..  .|.++            |.++++.+.|.-+..+|.+|++ .+  
T Consensus       249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl------------GcIh~~~~~y~~~~~~F~kAL~N~c~q  316 (696)
T KOG2471|consen  249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL------------GCIHYQLGCYQASSVLFLKALRNSCSQ  316 (696)
T ss_pred             HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc------------ceEeeehhhHHHHHHHHHHHHHHHHHH
Confidence            999999999999987654 222332      111  23344            9999999999999999999995 21  


Q ss_pred             ------ccC-----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214        263 ------ARN-----ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       263 ------p~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  317 (470)
                            |..     ..-...++++.|..|...|+.-.|.++|.+++.....+|..|.++|.|.+..
T Consensus       317 L~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  317 LRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                  110     0113578999999999999999999999999999999999999999998753

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.76  E-value=4.1e-07  Score=69.09  Aligned_cols=96  Identities=24%  Similarity=0.227  Sum_probs=85.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN---YLKALSRRCK  312 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~  312 (470)
                      ++.+.++-..|+.++|+.+|++++........ ...++..+|.++..+|++++|+..+++++...|+   +..+...++.
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAAGLSGAD-RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            34499999999999999999999997655443 4678999999999999999999999999999898   7888888999


Q ss_pred             HHHHhCCHHHHHHHHHHHHh
Q psy16214        313 CFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~~a~~  332 (470)
                      ++...|++++|+..+-.++.
T Consensus        84 ~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999988775

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.75  E-value=2.3e-08  Score=79.99  Aligned_cols=58  Identities=21%  Similarity=0.371  Sum_probs=52.5

Q ss_pred             CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        368 ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       368 ~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      .+..+|+++|++++.++|||+....++..+..+...+..|++||++|+||.+|+.|+-
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL   60 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYML   60 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence            4568999999999999999998776666777788999999999999999999999987

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG0545|consensus

Probab=98.74  E-value=3.5e-07  Score=75.84  Aligned_cols=106  Identities=25%  Similarity=0.389  Sum_probs=95.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCc----------hhHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV--------CPN----------VAAYYGNRAACYMMLGMYTYALDDAKLA   64 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~----------~~~~~~~~a~~~~~~g~~~~A~~~~~~a   64 (470)
                      .+..+...|+.+|..|+|.+|...|..||..        .|.          ....+.+.+.|++..|+|-++++.+..+
T Consensus       177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999743        333          3567889999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214         65 VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI  108 (470)
Q Consensus        65 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  108 (470)
                      +..+|.+.++++..|.++...-+.++|...|.++++++|.-..+
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            99999999999999999999999999999999999999976554

>KOG2796|consensus

Probab=98.72  E-value=2.7e-05  Score=65.68  Aligned_cols=139  Identities=21%  Similarity=0.228  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL  232 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  232 (470)
                      +.+.++.++.-.+.|.-.+..+.++++.+ |..+.....+|.+.++.||.+.|..+++++-+...               
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---------------  243 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---------------  243 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh---------------
Confidence            34445556666666666666666666655 44455555666666666666666666654432111               


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                                                 .++  +......+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.|.
T Consensus       244 ---------------------------kL~--~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL  294 (366)
T KOG2796|consen  244 ---------------------------KLD--GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL  294 (366)
T ss_pred             ---------------------------hhh--ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence                                       011  111123445566666666677777777777777777777777777777


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        313 CFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      |++.+|+...|++.++.++++.|.
T Consensus       295 cllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  295 CLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCc
Confidence            777777777777777777777776

>KOG2796|consensus

Probab=98.69  E-value=7.1e-06  Score=69.09  Aligned_cols=205  Identities=13%  Similarity=0.055  Sum_probs=136.2

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        71 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                      +...|...-.++.++..+++|..-+...-+++..+-..                                 +---.+.|+
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Y---------------------------------ey~p~iyp~  114 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYY---------------------------------EYYPHVYPG  114 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceee---------------------------------eeccccCCC
Confidence            35566667777888888888887777666655433211                                 000111222


Q ss_pred             C------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHH
Q psy16214        151 S------KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE  224 (470)
Q Consensus       151 ~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  224 (470)
                      .      .......|.+....|+..+.+.-+..+...       .-.+-.........+..+..+++-+.      .+..
T Consensus       115 rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~-------V~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy  181 (366)
T KOG2796|consen  115 RRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTV-------VSKILANLEQGLAEESSIRLWRKRLG------RVMY  181 (366)
T ss_pred             CcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-------HHHHHHHHHhccchhhHHHHHHHHHH------HHHH
Confidence            1      123444677777788877777666554431       11112222233334666777766543      2344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C
Q psy16214        225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK----D  300 (470)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~  300 (470)
                      .+            ..++.-.+.|.-.+..+.+.++.+|..   .+.+...+|.+-++.|+.+.|..+++.+-+.    +
T Consensus       182 ~~------------~~~llG~kEy~iS~d~~~~vi~~~~e~---~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~  246 (366)
T KOG2796|consen  182 SM------------ANCLLGMKEYVLSVDAYHSVIKYYPEQ---EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD  246 (366)
T ss_pred             HH------------HHHHhcchhhhhhHHHHHHHHHhCCcc---cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence            44            778888888999999999999877433   4567888999999999999999999855433    2


Q ss_pred             --CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        301 --PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       301 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                        .....+..+.+.++.-.+++.+|...+.+++..+|.
T Consensus       247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~  284 (366)
T KOG2796|consen  247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR  284 (366)
T ss_pred             ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence              334667788889999999999999999999999997

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.67  E-value=3.6e-07  Score=72.70  Aligned_cols=95  Identities=17%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q psy16214         20 YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM----------YTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD--   87 (470)
Q Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--   87 (470)
                      |+.|.+.++.....+|.+++.+++-|.++..+.+          +++|+.-|+.|+.++|+...+++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6889999999999999999999999999987744          5678888999999999999999999999988764  


Q ss_pred             ---------hHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214         88 ---------APTARSNLKALQELDPDNPAIAQESKA  114 (470)
Q Consensus        88 ---------~~~A~~~~~~~l~~~p~~~~~~~~l~~  114 (470)
                               |++|..+|+++...+|++......|..
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence                     788999999999999999876544443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=1.1e-07  Score=87.20  Aligned_cols=70  Identities=16%  Similarity=0.084  Sum_probs=65.1

Q ss_pred             cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214         33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKG---LIRQIKCNIALGDAPTARSNLKALQELD  102 (470)
Q Consensus        33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~l~~~  102 (470)
                      .+|+++.+++++|.+|+.+|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            467889999999999999999999999999999999999854   9999999999999999999999999973

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=98.64  E-value=3.6e-05  Score=74.24  Aligned_cols=165  Identities=13%  Similarity=0.061  Sum_probs=125.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH-------HHHHH-HH--h--ccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATDKQNPDAV-------FVRGL-CL--Y--YDDKMDLAVNHFQLLLKLAPDHAKAKET  225 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-------~~la~-~~--~--~~g~~~~A~~~~~~~l~~~p~~~~~~~~  225 (470)
                      +..+.--.|+-+.++..+.++.+. ++--...       +.... .+  .  ...+.+.|...+.......|+.......
T Consensus       194 ll~~vGF~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~  272 (468)
T PF10300_consen  194 LLSFVGFSGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF  272 (468)
T ss_pred             HHhhcCcCCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            334444568999999999998773 2221111       11111 11  1  3456788999999999999998777666


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H
Q psy16214        226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-L  304 (470)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~  304 (470)
                      .            |.++...|+.++|++.|++++.....-+.+....++.+++++..+.+|++|..++.+.++.+.-+ .
T Consensus       273 ~------------gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka  340 (468)
T PF10300_consen  273 E------------GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKA  340 (468)
T ss_pred             H------------HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHH
Confidence            6            99999999999999999999976666666667889999999999999999999999999876554 3


Q ss_pred             HHHHHHHHHHHHhCCH-------HHHHHHHHHHHhcCC
Q psy16214        305 KALSRRCKCFHALGQY-------KECVIDAEKIYKMDN  335 (470)
Q Consensus       305 ~~~~~la~~~~~~g~~-------~~A~~~~~~a~~~~p  335 (470)
                      -..+..|.|+..+++.       ++|...+.++-.+..
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            4456678899999999       888888887766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1586|consensus

Probab=98.63  E-value=2.7e-05  Score=64.46  Aligned_cols=185  Identities=20%  Similarity=0.233  Sum_probs=119.9

Q ss_pred             CCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHHcCChHHH
Q psy16214         18 KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL----DP--RFSKGLIRQIKCNIALGDAPTA   91 (470)
Q Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~g~~~~A   91 (470)
                      +.|++|.++|.++-              ..|...+++..|=..|.++-+.    +.  +-...|...+.||.+. ++++|
T Consensus        28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eA   92 (288)
T KOG1586|consen   28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEA   92 (288)
T ss_pred             cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHH
Confidence            46778887777763              3344444455554455444432    11  1244566667777655 89999


Q ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHHHH-HHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH
Q psy16214         92 RSNLKALQELDPDNPAIAQESKALETMAKN-FEGASKAFE-ANDYRTAMFYLDRAMDQGVASK------TYKLMKAECLA  163 (470)
Q Consensus        92 ~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~------~~~~~~a~~~~  163 (470)
                      +.++++++++..+       +|+.....+. .+.|..+-. ..++++|+.+|+++-+......      ..++..|..-.
T Consensus        93 v~cL~~aieIyt~-------~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa  165 (288)
T KOG1586|consen   93 VNCLEKAIEIYTD-------MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA  165 (288)
T ss_pred             HHHHHHHHHHHHh-------hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH
Confidence            9999998875543       3333222221 122222222 2577888888888876543322      33455667777


Q ss_pred             HcCCHHHHHHHHHHHhhcCCCCh-------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHH
Q psy16214        164 HLNRLQEAQEIANSILATDKQNP-------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE  224 (470)
Q Consensus       164 ~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  224 (470)
                      .+++|.+|+..|+++....-+++       +.++.-|.|++...+.-.+...+++-.+++|.....+.
T Consensus       166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsRE  233 (288)
T KOG1586|consen  166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRE  233 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHH
Confidence            88999999999999988766553       34567788888889999999999999999998776554

>KOG0376|consensus

Probab=98.62  E-value=6.9e-08  Score=88.18  Aligned_cols=113  Identities=29%  Similarity=0.504  Sum_probs=104.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH  315 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  315 (470)
                      .++++..+..+.++.|+..|.++|+++|+.    +..+.+++.++.+.+++..|+..+.++++++|....+|++.|.+..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnc----a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNC----AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcc----eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            455889999999999999999999999994    4559999999999999999999999999999999999999999999


Q ss_pred             HhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc
Q psy16214        316 ALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKR  352 (470)
Q Consensus       316 ~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~  352 (470)
                      .++++.+|...|++...+.|+ ..+...+.++....++
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999998 7788888888776654

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.61  E-value=1.5e-07  Score=76.17  Aligned_cols=70  Identities=19%  Similarity=0.256  Sum_probs=64.4

Q ss_pred             cchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        356 KDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       356 ~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      .+|+.++|++..  .+...+++.|+.+...+|||+....++.++..+...=..|++||.+|+||-+|+.|=-
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL   73 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII   73 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence            478999999875  7889999999999999999999988888888888899999999999999999999976

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.60  E-value=1e-07  Score=67.45  Aligned_cols=65  Identities=26%  Similarity=0.440  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEK---D----PNYLKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      .+.++.++|.++..+|++++|+.+|++++++   .    |..+.++.++|.++..+|++++|+.++++++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567888888888888888888888888865   1    122567888888888888888888888888875

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.57  E-value=3.2e-07  Score=84.21  Aligned_cols=65  Identities=22%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA---LSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      .+..++++|.+|..+|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.++++++++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45677788888888888888888888888888877744   788888888888888888888887776

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.56  E-value=1.4e-05  Score=63.73  Aligned_cols=147  Identities=16%  Similarity=0.144  Sum_probs=95.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-cCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214        133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA-TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL  211 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (470)
                      +.+..+....+.+...|.... .+.+|..+...|++.+|...|++++. +...++..+..++...+..+++..|...+++
T Consensus        71 dP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~  149 (251)
T COG4700          71 DPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED  149 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            334444444455555554433 44577777777777777777777664 3456667777777777777777777777777


Q ss_pred             HHhhCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214        212 LLKLAPDH--AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA  289 (470)
Q Consensus       212 ~l~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A  289 (470)
                      +.+.+|..  +.....+            |.++...|++.+|...|+.++...|.     +......+..+.++|+..+|
T Consensus       150 l~e~~pa~r~pd~~Ll~------------aR~laa~g~~a~Aesafe~a~~~ypg-----~~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         150 LMEYNPAFRSPDGHLLF------------ARTLAAQGKYADAESAFEVAISYYPG-----PQARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HhhcCCccCCCCchHHH------------HHHHHhcCCchhHHHHHHHHHHhCCC-----HHHHHHHHHHHHHhcchhHH
Confidence            77766642  3334444            77777777777777777777777766     33445556777777776666


Q ss_pred             HHHHHHHH
Q psy16214        290 IADCTLAL  297 (470)
Q Consensus       290 ~~~~~~al  297 (470)
                      ..-+....
T Consensus       213 ~aq~~~v~  220 (251)
T COG4700         213 NAQYVAVV  220 (251)
T ss_pred             HHHHHHHH
Confidence            55544433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.54  E-value=1.1e-07  Score=67.27  Aligned_cols=65  Identities=28%  Similarity=0.310  Sum_probs=36.5

Q ss_pred             chhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CC---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214         36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSL----DP---RFSKGLIRQIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      +-+.++.++|.+|..+|++++|+..|++++++    .+   ....++.++|.++..+|++++|+++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34455566666666666666666666666543    11   1234555666666666666666666666654

...

>KOG4507|consensus

Probab=98.53  E-value=9.8e-06  Score=75.74  Aligned_cols=107  Identities=18%  Similarity=0.095  Sum_probs=92.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |..+...|+...|+.++..|+...|....   ....++|.++.+.|-..+|-..+.+++.++...+-.++.+|++++.+.
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~  690 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALK  690 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence            33344568999999999999999887543   347889999999999999999999999999888999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy16214        319 QYKECVIDAEKIYKMDNS-RENHNFLEEAKR  348 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~  348 (470)
                      +.+.|++.++.|++++|+ .++.+-|..+..
T Consensus       691 ~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  691 NISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999998 666666655544

>KOG1586|consensus

Probab=98.50  E-value=6.6e-05  Score=62.28  Aligned_cols=184  Identities=15%  Similarity=0.112  Sum_probs=122.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-----CCC-hHHHHHHHHHHhccCChHHH
Q psy16214        132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD-----KQN-PDAVFVRGLCLYYDDKMDLA  205 (470)
Q Consensus       132 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~-~~~~~~la~~~~~~g~~~~A  205 (470)
                      +.+++|.+++.++              |..|....+|+.|-..|.++-...     ..+ ...+...+.+| +..++++|
T Consensus        28 ~k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eA   92 (288)
T KOG1586|consen   28 NKYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEA   92 (288)
T ss_pred             cchHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHH
Confidence            4667777666654              334444455555555554443321     111 23344444444 45599999


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHHHHH
Q psy16214        206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-GKNQEAFDIYTEALKIDARNINI--NSKLLHNRATVLFK  282 (470)
Q Consensus       206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~la~~~~~  282 (470)
                      +.++++++++..+-......      ..-+.+.|.+|... .++++|+.+|+++-+....+...  ....+...+..-..
T Consensus        93 v~cL~~aieIyt~~Grf~~a------Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~  166 (288)
T KOG1586|consen   93 VNCLEKAIEIYTDMGRFTMA------AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ  166 (288)
T ss_pred             HHHHHHHHHHHHhhhHHHHH------HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence            99999999876554332211      12223347777665 89999999999998664432211  23556666777788


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        283 MGKYNEAIADCTLALEKDPNYL-------KALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       283 ~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +++|.+|+..|++.....-++.       .-++.-|.|++...+.-.+...+++..+++|+
T Consensus       167 leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~  227 (288)
T KOG1586|consen  167 LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA  227 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence            9999999999999988765553       34566788999989999999999999999998

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.5e-07  Score=75.08  Aligned_cols=74  Identities=28%  Similarity=0.431  Sum_probs=61.1

Q ss_pred             ccchhhhccCCC---CCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCCcC
Q psy16214        355 VKDYYKILGVTK---NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIME  431 (470)
Q Consensus       355 ~~~~y~~lg~~~---~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~~~  431 (470)
                      ..+.|-+||++.   .+.+..|.++.++...+||||+.....   ...+...|+.|..|++||||+.+|..||+...+.+
T Consensus        42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g---~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~ad  118 (379)
T COG5269          42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGG---NKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDAD  118 (379)
T ss_pred             hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccC---CCCcHHHHHHHHHHHHHhccHHHHhhccccccccC
Confidence            367899999875   677899999999999999999873211   13467789999999999999999999999776554

>KOG3617|consensus

Probab=98.46  E-value=3.9e-05  Score=74.65  Aligned_cols=238  Identities=14%  Similarity=0.081  Sum_probs=157.8

Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH------------HHHhcCCCChHHHHHHHHH
Q psy16214         48 YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK------------ALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        48 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~------------~~l~~~p~~~~~~~~l~~~  115 (470)
                      |...|+.+.|.+..+-.     .....|-++|....+..+.+-|.-++-            ++.+ +|++.++       
T Consensus       738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e~ea-------  804 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEEDEA-------  804 (1416)
T ss_pred             EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcchhh-------
Confidence            44568888887766532     234678888888888877777665543            2222 2322221       


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                             .-|....+.|..++|..+|.+.-+.        -.+-.+|...|.|++|.++.+.--+++-  -..|++.|.-
T Consensus       805 -------kvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiHL--r~Tyy~yA~~  867 (1416)
T KOG3617|consen  805 -------KVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIHL--RNTYYNYAKY  867 (1416)
T ss_pred             -------HHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhccceeh--hhhHHHHHHH
Confidence                   1233355667777787777775432        3456678888999999888765333221  3467888888


Q ss_pred             HhccCChHHHHHHHHHH----------HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214        196 LYYDDKMDLAVNHFQLL----------LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN  265 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~----------l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  265 (470)
                      +...++.+.|+++|+++          +.-+|.....+....+-..+..  =-|..+...|+.+.|+.+|..|-      
T Consensus       868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~--WWgqYlES~GemdaAl~~Y~~A~------  939 (1416)
T KOG3617|consen  868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYS--WWGQYLESVGEMDAALSFYSSAK------  939 (1416)
T ss_pred             HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHH--HHHHHHhcccchHHHHHHHHHhh------
Confidence            88889999999999875          2222322111111100000000  01777778899999999998652      


Q ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                            -|+.+-.+..-+|+.++|-...++     ..+..+.+.+|+.|...|++.+|+.+|.+|-...
T Consensus       940 ------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs  997 (1416)
T KOG3617|consen  940 ------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFS  997 (1416)
T ss_pred             ------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence                  277778888889999998776554     5677899999999999999999999998876543

>KOG2610|consensus

Probab=98.44  E-value=9.9e-05  Score=64.61  Aligned_cols=165  Identities=10%  Similarity=0.007  Sum_probs=131.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCCh---HHHHHHHHHH
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT-DKQNP---DAVFVRGLCL  196 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~---~~~~~la~~~  196 (470)
                      ....+...+.+|+..+|-...+++++..|.+.-++..--.+++.+|+...-...+++++.. +|+-|   .+.-.++..+
T Consensus       106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL  185 (491)
T KOG2610|consen  106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL  185 (491)
T ss_pred             hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence            3445566778899999999999999999999888887788899999999999999999877 66553   3444566777


Q ss_pred             hccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214        197 YYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR  276 (470)
Q Consensus       197 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~l  276 (470)
                      ...|-+++|.+.-+++++++|.+..+....            +.++...+++.++.+...+.-..-....-..+.-|..-
T Consensus       186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~------------aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~  253 (491)
T KOG2610|consen  186 EECGIYDDAEKQADRALQINRFDCWASHAK------------AHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT  253 (491)
T ss_pred             HHhccchhHHHHHHhhccCCCcchHHHHHH------------HHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence            889999999999999999999988877776            88888899999999988775433222211123446777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q psy16214        277 ATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~al  297 (470)
                      +.++..-+.|+.|++.|..-+
T Consensus       254 Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  254 ALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHhhhcccchhHHHHHHHHHH
Confidence            889999999999999998765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.41  E-value=2.8e-06  Score=67.75  Aligned_cols=88  Identities=19%  Similarity=0.186  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214        248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK----------YNEAIADCTLALEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       248 ~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  317 (470)
                      ++.|.+.++.....+|.+    +..+++-|.++..+.+          +++|+.-|++|+.++|+...+++.+|.+|..+
T Consensus         7 FE~ark~aea~y~~nP~D----adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLD----ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHh----HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            678899999999999995    5557777777776643          57788899999999999999999999999877


Q ss_pred             CC-----------HHHHHHHHHHHHhcCCChhH
Q psy16214        318 GQ-----------YKECVIDAEKIYKMDNSREN  339 (470)
Q Consensus       318 g~-----------~~~A~~~~~~a~~~~p~~~~  339 (470)
                      +.           |++|..+|++|...+|+++.
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            54           78999999999999998554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1914|consensus

Probab=98.38  E-value=0.0021  Score=60.20  Aligned_cols=325  Identities=9%  Similarity=-0.043  Sum_probs=175.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH-HHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLI-RQIKC   81 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~~   81 (470)
                      +.++|+.+-..+-.+ -+++..+.|++.+...|..+.+|.......+...+|+.-...|.+++..--+ ...|. .+..+
T Consensus        19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lDLW~lYl~YV   96 (656)
T KOG1914|consen   19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LDLWKLYLSYV   96 (656)
T ss_pred             cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-HhHHHHHHHHH
Confidence            456677776665544 8888888888888888888888888888888888888888888888764322 33332 22333


Q ss_pred             HHHcCChHHHHHHH----HHHHh---cCCCChHHHHHHHHHHHH---HH------HHHHHHHHHh---------------
Q psy16214         82 NIALGDAPTARSNL----KALQE---LDPDNPAIAQESKALETM---AK------NFEGASKAFE---------------  130 (470)
Q Consensus        82 ~~~~g~~~~A~~~~----~~~l~---~~p~~~~~~~~l~~~~~~---~~------~~~~a~~~~~---------------  130 (470)
                      -...++...+.+..    +-++.   .++....+|.........   .+      +++.....++               
T Consensus        97 R~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~  176 (656)
T KOG1914|consen   97 RETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWK  176 (656)
T ss_pred             HHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHH
Confidence            33444444444333    33332   334444455444433311   00      1111111110               


Q ss_pred             ---------------------cCCHHHHHHHHHHHHHh-------CCC----C-------HHHHHHHHHHHHHc------
Q psy16214        131 ---------------------ANDYRTAMFYLDRAMDQ-------GVA----S-------KTYKLMKAECLAHL------  165 (470)
Q Consensus       131 ---------------------~~~~~~A~~~~~~~l~~-------~p~----~-------~~~~~~~a~~~~~~------  165 (470)
                                           ...|..|...++.....       +|.    .       .+.|.+....-...      
T Consensus       177 DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~  256 (656)
T KOG1914|consen  177 DYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLD  256 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCccccc
Confidence                                 12334444444333221       111    0       01121111111110      


Q ss_pred             CC--HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC--------------hHHHHHHHHHHHhhCCC-hHHHHHHHHH
Q psy16214        166 NR--LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK--------------MDLAVNHFQLLLKLAPD-HAKAKETYKR  228 (470)
Q Consensus       166 ~~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~l~~~p~-~~~~~~~~~~  228 (470)
                      |.  -..-.=.+++++..-+-.+++|+..+..+...++              .+++..+|++++...-. +......+..
T Consensus       257 ~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~  336 (656)
T KOG1914|consen  257 GTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALAD  336 (656)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11  0123345566666666677777766655555444              56777777777653221 1111111111


Q ss_pred             HHHHHH--------------------------HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH-HH
Q psy16214        229 AKLLKA--------------------------KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV-LF  281 (470)
Q Consensus       229 ~~~~~~--------------------------~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~-~~  281 (470)
                      ......                          +...-+...+..-...|...|.+|-+..-.    ...++..-|.+ |.
T Consensus       337 ~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~----~hhVfVa~A~mEy~  412 (656)
T KOG1914|consen  337 YEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT----RHHVFVAAALMEYY  412 (656)
T ss_pred             hHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC----cchhhHHHHHHHHH
Confidence            100000                          000022222333445566666665443222    11233333332 55


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       282 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      ..++.+-|...|+-.+...++.+..-......+..+++-..|...|++++..
T Consensus       413 cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s  464 (656)
T KOG1914|consen  413 CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS  464 (656)
T ss_pred             hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence            6889999999999999999999999999999999999999999999999987

>KOG1585|consensus

Probab=98.38  E-value=0.00016  Score=60.46  Aligned_cols=199  Identities=16%  Similarity=0.077  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE  111 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  111 (470)
                      +..|..-+.+|....+|++|...+.++++-..++      .+++-..+.+...+..+.++..+++++..+.-.+      
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~------  104 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC------  104 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh------
Confidence            4556666788888899999999999998654332      4567777788888889999999999987754222      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----
Q psy16214        112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS------KTYKLMKAECLAHLNRLQEAQEIANSILAT----  181 (470)
Q Consensus       112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----  181 (470)
                       |......-.+++|-..++..++++|+.+|++++.+....      .+.+...++++.+..++.+|...+.+-...    
T Consensus       105 -GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~  183 (308)
T KOG1585|consen  105 -GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC  183 (308)
T ss_pred             -CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence             111222224677788899999999999999998774433      245566788899999999998887764332    


Q ss_pred             --CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC----CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16214        182 --DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA----PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIY  255 (470)
Q Consensus       182 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  255 (470)
                        .++....+.....+++...+|..|..+++.+.++.    |++......+             ...+..|+.++....+
T Consensus       184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenL-------------L~ayd~gD~E~~~kvl  250 (308)
T KOG1585|consen  184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENL-------------LTAYDEGDIEEIKKVL  250 (308)
T ss_pred             hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHH-------------HHHhccCCHHHHHHHH
Confidence              33334456666677777889999999999877643    3444433332             3445667777766655


Q ss_pred             H
Q psy16214        256 T  256 (470)
Q Consensus       256 ~  256 (470)
                      .
T Consensus       251 ~  251 (308)
T KOG1585|consen  251 S  251 (308)
T ss_pred             c
Confidence            4

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.37  E-value=0.0041  Score=62.71  Aligned_cols=310  Identities=15%  Similarity=0.093  Sum_probs=188.3

Q ss_pred             cHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhcCCc--h----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---C-
Q psy16214          3 SAEKHKEDGNTQY-KLKQYSKALKCYSEAISVCPN--V----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR---F-   71 (470)
Q Consensus         3 ~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~-   71 (470)
                      ++...+.+|..++ ...+++.|..++++++.+...  .    ..+.+.++.++.+.+... |+..++++++...+   . 
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~  136 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA  136 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence            5677888999988 788999999999999887633  2    334456688888887777 99999999886443   2 


Q ss_pred             HHHHHHH--HHHHHHcCChHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         72 SKGLIRQ--IKCNIALGDAPTARSNLKALQELDP--DNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        72 ~~~~~~l--a~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                      ....+++  ...+...+++..|++.++.+.....  .++.+.. +..       +..+...+..+..+++++.++++...
T Consensus       137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v-~~~-------l~~~~l~l~~~~~~d~~~~l~~~~~~  208 (608)
T PF10345_consen  137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV-LAS-------LSEALLHLRRGSPDDVLELLQRAIAQ  208 (608)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH-HHH-------HHHHHHHhcCCCchhHHHHHHHHHHH
Confidence            2222222  3333334799999999999888663  4444322 111       23344456667777788888777433


Q ss_pred             CC----------CCHHHHHHHH--HHHHHcCCHHHHHHHHHHH---hhc---CC---C---C-----------------h
Q psy16214        148 GV----------ASKTYKLMKA--ECLAHLNRLQEAQEIANSI---LAT---DK---Q---N-----------------P  186 (470)
Q Consensus       148 ~p----------~~~~~~~~~a--~~~~~~~~~~~A~~~~~~~---l~~---~p---~---~-----------------~  186 (470)
                      ..          ....++..+-  .+....|++..+...+++.   +..   .+   .   +                 +
T Consensus       209 ~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~  288 (608)
T PF10345_consen  209 ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTP  288 (608)
T ss_pred             HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCce
Confidence            11          1223333333  3456677776666655443   211   11   0   0                 0


Q ss_pred             -------------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH---------H---HHHHHH--HHHHHHHHHHHH
Q psy16214        187 -------------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA---------K---AKETYK--RAKLLKAKKEEG  239 (470)
Q Consensus       187 -------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---------~---~~~~~~--~~~~~~~~~~~~  239 (470)
                                   -++..-|.+....+..++|.+++.++++.-.+..         .   +.....  .........-.+
T Consensus       289 ~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~  368 (608)
T PF10345_consen  289 LVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQI  368 (608)
T ss_pred             eEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHH
Confidence                         1233445556667777788888888876321111         0   111111  111122223347


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccC-----ccchHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCC---
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARN-----ININSKLLHNRATVLFKMGKYNEAIADCT--------LALEKDPNY---  303 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~--------~al~~~p~~---  303 (470)
                      ...+-.+++..|....+.+.......     ....+.+++..|..+...|+.+.|+..|.        .+....+.+   
T Consensus       369 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~  448 (608)
T PF10345_consen  369 WCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELY  448 (608)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHH
Confidence            77788899999999888877654322     12246788899999999999999999998        333333333   


Q ss_pred             HHHHHHHHHHHHHhCCHH
Q psy16214        304 LKALSRRCKCFHALGQYK  321 (470)
Q Consensus       304 ~~~~~~la~~~~~~g~~~  321 (470)
                      .-+..++..++...+...
T Consensus       449 ila~LNl~~I~~~~~~~~  466 (608)
T PF10345_consen  449 ILAALNLAIILQYESSRD  466 (608)
T ss_pred             HHHHHHHHHHhHhhcccc
Confidence            334556667776655533

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1308|consensus

Probab=98.34  E-value=2.7e-07  Score=80.49  Aligned_cols=100  Identities=23%  Similarity=0.355  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      ......+...+..|.+++||+.|..+|.++|..+..+..++.+++.+++...|+..|..+++++|+....|-..+.+...
T Consensus       115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl  194 (377)
T KOG1308|consen  115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL  194 (377)
T ss_pred             HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCC
Q psy16214         85 LGDAPTARSNLKALQELDPD  104 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~  104 (470)
                      +|++++|...+..+.+++-+
T Consensus       195 lg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  195 LGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhchHHHHHHHHHHHhcccc
Confidence            99999999999999987643

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=98.32  E-value=0.0018  Score=60.76  Aligned_cols=168  Identities=14%  Similarity=0.100  Sum_probs=100.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC----CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH-HHHH
Q psy16214        150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDK----QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKE  224 (470)
Q Consensus       150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~  224 (470)
                      .....+...+.+....|+++.|...+.++....+    ..+.+.+..+.++...|+..+|+..++..+....... ....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            4445666677777777777777777777666442    1456666677777777777777777776666222211 1000


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hhcccCccchHHHHHHHHHHHHHc------CCHHHHHHHHHHH
Q psy16214        225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL--KIDARNININSKLLHNRATVLFKM------GKYNEAIADCTLA  296 (470)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~a  296 (470)
                      .               .....+-..    .+....  ..........+.++..+|......      +..++++..|.++
T Consensus       224 ~---------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a  284 (352)
T PF02259_consen  224 N---------------AELKSGLLE----SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEA  284 (352)
T ss_pred             H---------------HHHhhcccc----ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence            0               000000000    000000  001111222457777888877777      8899999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHhcCCC
Q psy16214        297 LEKDPNYLKALSRRCKCFHALGQY-----------------KECVIDAEKIYKMDNS  336 (470)
Q Consensus       297 l~~~p~~~~~~~~la~~~~~~g~~-----------------~~A~~~~~~a~~~~p~  336 (470)
                      ++++|+...+|+..|..+..+=+.                 ..|+..|-+++...+.
T Consensus       285 ~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  285 TKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999999999998887654221                 3467777777777665

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1585|consensus

Probab=98.28  E-value=0.00048  Score=57.74  Aligned_cols=213  Identities=12%  Similarity=0.014  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         72 SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS-KAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                      ...|..-+.+|....++++|..++.++.+-..+|...++. +..      ++.|. ..-+...+.++..+++++...   
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-AKa------yEqaamLake~~klsEvvdl~eKAs~l---  100 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-AKA------YEQAAMLAKELSKLSEVVDLYEKASEL---  100 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-HHH------HHHHHHHHHHHHHhHHHHHHHHHHHHH---
Confidence            4566777889999999999999999998766665544321 221      22222 223335566666666665433   


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q psy16214        151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK  230 (470)
Q Consensus       151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  230 (470)
                                 |...|..+.|...++++-+               ....-++++|+.+|++++.+-..+.........+.
T Consensus       101 -----------Y~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g  154 (308)
T KOG1585|consen  101 -----------YVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG  154 (308)
T ss_pred             -----------HHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence                       3444444444443333322               23344555555555555554333222222111111


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc--cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCH
Q psy16214        231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA--RNININSKLLHNRATVLFKMGKYNEAIADCTLALEK----DPNYL  304 (470)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~  304 (470)
                      ..      ++++.+..++.+|-..+.+-.....  .+.......+.....+++...+|..|..+++..-++    .|++.
T Consensus       155 k~------sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~  228 (308)
T KOG1585|consen  155 KC------SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS  228 (308)
T ss_pred             Hh------hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence            11      5555555555555554444322110  011112344444445555555666666666665544    23444


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHH
Q psy16214        305 KALSRRCKCFHALGQYKECVIDA  327 (470)
Q Consensus       305 ~~~~~la~~~~~~g~~~~A~~~~  327 (470)
                      .++-+|-..| ..|+.++....+
T Consensus       229 r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  229 RSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHHh-ccCCHHHHHHHH
Confidence            4444444433 345555544433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.23  E-value=3.1e-06  Score=51.88  Aligned_cols=40  Identities=23%  Similarity=0.110  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214         40 YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      ++..+|.+|..+|++++|+..|+++++.+|+++.++..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444444444444444444444444444444444444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.18  E-value=0.0014  Score=60.00  Aligned_cols=178  Identities=13%  Similarity=0.064  Sum_probs=125.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc----CCCChHHHHHHHHHHhc---cCChHHHHHHHHH-HHhhCCChHHH
Q psy16214        151 SKTYKLMKAECLAHLNRLQEAQEIANSILAT----DKQNPDAVFVRGLCLYY---DDKMDLAVNHFQL-LLKLAPDHAKA  222 (470)
Q Consensus       151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~p~~~~~  222 (470)
                      ++.+...+-.+|....+|+.-+.+.+.+-..    .++.+.+.+..|.++.+   .|+.++|+..+.. +....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4456677778899999999999999888776    55677888899999988   8999999999999 44566677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Q psy16214        223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL-----  297 (470)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----  297 (470)
                      +...+++..-.-. + + ........++|+..|.++..++|+.-     .-.|++.++...|.-.+....+++..     
T Consensus       220 ~gL~GRIyKD~~~-~-s-~~~d~~~ldkAi~~Y~kgFe~~~~~Y-----~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~  291 (374)
T PF13281_consen  220 LGLLGRIYKDLFL-E-S-NFTDRESLDKAIEWYRKGFEIEPDYY-----SGINAATLLMLAGHDFETSEELRKIGVKLSS  291 (374)
T ss_pred             HHHHHHHHHHHHH-H-c-CccchHHHHHHHHHHHHHHcCCcccc-----chHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence            7777444322100 0 0 01122348999999999999997631     23456666666665333222222221     


Q ss_pred             ---Hh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        298 ---EK----DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       298 ---~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                         +.    .-++...+-.++.+..-.|++++|+..+++++++.|.
T Consensus       292 llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  292 LLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             HHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence               11    2344667777889999999999999999999999875

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.17  E-value=5.2e-06  Score=50.89  Aligned_cols=43  Identities=21%  Similarity=0.111  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                      .++..+|.+|..+|++++|+..|+++++.+|+++.++..+|.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            4688899999999999999999999999999999999888753

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=98.16  E-value=0.011  Score=59.56  Aligned_cols=322  Identities=14%  Similarity=0.062  Sum_probs=198.4

Q ss_pred             HHHHHHHHHHHhhc-CCc---hhHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCC--CCH----HHHHHHHHHHHHcCCh
Q psy16214         20 YSKALKCYSEAISV-CPN---VAAYYGNRAACYM-MLGMYTYALDDAKLAVSLDP--RFS----KGLIRQIKCNIALGDA   88 (470)
Q Consensus        20 ~~~A~~~~~~al~~-~p~---~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p--~~~----~~~~~la~~~~~~g~~   88 (470)
                      ...|+.+++.+++. .+.   .+.+++.+|.+++ ...+++.|..++++++.+..  +..    .+.+.++.++.+.+..
T Consensus        37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~  116 (608)
T PF10345_consen   37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK  116 (608)
T ss_pred             HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence            35567888877742 222   3678899999988 68999999999999988763  333    3455678899888877


Q ss_pred             HHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHH----HHHHHH
Q psy16214         89 PTARSNLKALQELDPDN-PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG--VASKTYK----LMKAEC  161 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~----~~~a~~  161 (470)
                      . |...+++.++...+. ...|...-++.       .+...+..+++..|+..++.+....  +.++.+.    ...+.+
T Consensus       117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll-------~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l  188 (608)
T PF10345_consen  117 A-ALKNLDKAIEDSETYGHSAWYYAFRLL-------KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL  188 (608)
T ss_pred             H-HHHHHHHHHHHHhccCchhHHHHHHHH-------HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence            7 999999998865542 12222222221       1112222379999999999888775  3444332    334566


Q ss_pred             HHHcCCHHHHHHHHHHHhhcC------CC----ChHHHHHHHH--HHhccCChHHHHHHHHHH---HhhCCChH------
Q psy16214        162 LAHLNRLQEAQEIANSILATD------KQ----NPDAVFVRGL--CLYYDDKMDLAVNHFQLL---LKLAPDHA------  220 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~------p~----~~~~~~~la~--~~~~~g~~~~A~~~~~~~---l~~~p~~~------  220 (470)
                      +...+..+++++.++.+....      |+    ...+|..+-.  +....|++..+...+++.   +....+.+      
T Consensus       189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~  268 (608)
T PF10345_consen  189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD  268 (608)
T ss_pred             HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence            667787888888888774321      11    1234443333  345677766666554433   33111110      


Q ss_pred             --------------------HH--HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc-------Cccc---
Q psy16214        221 --------------------KA--KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR-------NINI---  268 (470)
Q Consensus       221 --------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~---  268 (470)
                                          ..  |.....+.. ..+.--|......+..+.|.+++.++++.-.+       .+..   
T Consensus       269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~-L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~  347 (608)
T PF10345_consen  269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYA-LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLS  347 (608)
T ss_pred             CCeeEEeecccccccCCCceeEEeecCHHHHHH-HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHH
Confidence                                00  101111111 11112266777777777888888887743211       1110   


Q ss_pred             ------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16214        269 ------------NSKLLHNRATVLFKMGKYNEAIADCTLALEKD---PN------YLKALSRRCKCFHALGQYKECVIDA  327 (470)
Q Consensus       269 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~  327 (470)
                                  ...+....+.+..-.+++..|......+....   |.      .+.+++..|..+...|+.+.|...|
T Consensus       348 ~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y  427 (608)
T PF10345_consen  348 EASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQY  427 (608)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence                        12455567888889999999998888777652   22      3778999999999999999999999


Q ss_pred             H--------HHHhcCCChhH--HHHHHHHHHHh
Q psy16214        328 E--------KIYKMDNSREN--HNFLEEAKRLL  350 (470)
Q Consensus       328 ~--------~a~~~~p~~~~--~~~l~~~~~~~  350 (470)
                      .        .+....+..+.  ...|..+-...
T Consensus       428 ~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~  460 (608)
T PF10345_consen  428 QKPRFLLCEAANRKSKFRELYILAALNLAIILQ  460 (608)
T ss_pred             hhhHHhhhhhhccCCcchHHHHHHHHHHHHHhH
Confidence            8        55555555554  33344443333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG1550|consensus

Probab=98.16  E-value=0.0037  Score=61.98  Aligned_cols=284  Identities=19%  Similarity=0.161  Sum_probs=194.7

Q ss_pred             CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHc-----CChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC--
Q psy16214         19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMML-----GMYTYALDDAKLAVSL-----DPRFSKGLIRQIKCNIALG--   86 (470)
Q Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--   86 (470)
                      +...|..+++.+.+.  .+..+...+|.||..-     .+.+.|+.+++.+.+.     .-.++.+.+.+|.+|..-.  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888888765  4678888899998865     6899999999998771     1125668889999998853  


Q ss_pred             ---ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214         87 ---DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA  163 (470)
Q Consensus        87 ---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  163 (470)
                         +...|..+|.++-...  ++.+...++.++....         ...++..|..+|..+...  ....+.+.++.||.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~---------~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~  371 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT---------KERDYRRAFEYYSLAAKA--GHILAIYRLALCYE  371 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC---------ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence               6788999999988765  4555666666643321         225678899999888765  45667777888876


Q ss_pred             Hc----CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214        164 HL----NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       164 ~~----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  238 (470)
                      .-    .+...|..++.++...+  ++.+.+.++.++... +.++.+...+.....+--+........  +.      ..
T Consensus       372 ~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~--l~------~~  441 (552)
T KOG1550|consen  372 LGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAY--LL------DQ  441 (552)
T ss_pred             hCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHH--HH------Hh
Confidence            53    57889999999999877  556566666555332 777777766655544433222211111  00      00


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214        239 GNEKFV----AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM----GKYNEAIADCTLALEKDPNYLKALSRR  310 (470)
Q Consensus       239 ~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (470)
                      ......    ..+...+...+.++....      +..+...+|.+|..-    .+++.|...|.++....   +...+++
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g------~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nl  512 (552)
T KOG1550|consen  442 SEEDLFSRGVISTLERAFSLYSRAAAQG------NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNL  512 (552)
T ss_pred             ccccccccccccchhHHHHHHHHHHhcc------CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhh
Confidence            101111    125566777777665443      235677888887754    36999999999998877   8999999


Q ss_pred             HHHHHHh---CCHHHHHHHHHHHHhcCCC
Q psy16214        311 CKCFHAL---GQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       311 a~~~~~~---g~~~~A~~~~~~a~~~~p~  336 (470)
                      |.++..-   .....|.++|.++.+.+..
T Consensus       513 g~~~e~g~g~~~~~~a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  513 GYMHEHGEGIKVLHLAKRYYDQASEEDSR  541 (552)
T ss_pred             hhHHhcCcCcchhHHHHHHHHHHHhcCch
Confidence            9999742   2278999999999987764

>KOG1150|consensus

Probab=98.16  E-value=1.1e-05  Score=64.23  Aligned_cols=66  Identities=29%  Similarity=0.526  Sum_probs=57.6

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      -+-|.+|.+....+.++|++.||++++.-||||+++    +.+.|.+.|-.+..||..|-|+..|.+-+.
T Consensus        53 LNpfeVLqIdpev~~edikkryRklSilVHPDKN~D----d~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   53 LNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPD----DAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             cChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcc----cHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            356899999999999999999999999999999987    345788999999999999999986655443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.14  E-value=0.00013  Score=65.60  Aligned_cols=136  Identities=13%  Similarity=0.074  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc-cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY-DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL  232 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  232 (470)
                      +|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|..+      
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y------   76 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEY------   76 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHH------
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHH------
Confidence            455555666666667777777777776555667777777777555 4555557777777777777777777766      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                            ...+...++.+.|..+|++++..-|.... ...+|......-...|+.+....+.+++.+..|.
T Consensus        77 ------~~~l~~~~d~~~aR~lfer~i~~l~~~~~-~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   77 ------LDFLIKLNDINNARALFERAISSLPKEKQ-SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             ------HHHHHHTT-HHHHHHHHHHHCCTSSCHHH-CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             ------HHHHHHhCcHHHHHHHHHHHHHhcCchhH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence                  66667777777777777777766554321 1234444455555555555555555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.12  E-value=0.00035  Score=56.15  Aligned_cols=95  Identities=25%  Similarity=0.284  Sum_probs=74.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCcc------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNIN------------------INSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      .+......++.+.++..+.+++.+...+.-                  ....+...++..+...|++++|+..+++++..
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~   91 (146)
T PF03704_consen   12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL   91 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence            366667788999999999999976532110                  02355667788889999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        300 DPNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       300 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      +|.+-.++..+..+|...|+..+|+..|+++..
T Consensus        92 dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   92 DPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998854

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.12  E-value=0.0005  Score=63.88  Aligned_cols=190  Identities=16%  Similarity=0.069  Sum_probs=119.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--------------------
Q psy16214         11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR--------------------   70 (470)
Q Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--------------------   70 (470)
                      -....+..+...-++.-.+|++++|+.+.+|..+|.-.  .....+|...++++++....                    
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR  252 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence            34456788999999999999999999999998887632  22345666666666553110                    


Q ss_pred             -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16214         71 -----FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN--PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR  143 (470)
Q Consensus        71 -----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  143 (470)
                           ...+..++|.|..++|+.++|++.++.+++..|..  ..+...+...            +++.+.|.++...+.+
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~------------LLelq~Yad~q~lL~k  320 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEA------------LLELQAYADVQALLAK  320 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHH------------HHhcCCHHHHHHHHHH
Confidence                 13355678999999999999999999999877752  3344444433            5666777777766666


Q ss_pred             HHHh-CCCCHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHhhcCCCChHHHHHHHH------HHhccC
Q psy16214        144 AMDQ-GVASKTYKLMKAECLAHL-NR---------------LQEAQEIANSILATDKQNPDAVFVRGL------CLYYDD  200 (470)
Q Consensus       144 ~l~~-~p~~~~~~~~~a~~~~~~-~~---------------~~~A~~~~~~~l~~~p~~~~~~~~la~------~~~~~g  200 (470)
                      .-++ -|.+..+.+..|.+-.+. ++               -..|++.+.++++.+|..+..+..+=.      -..+.|
T Consensus       321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrG  400 (539)
T PF04184_consen  321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRG  400 (539)
T ss_pred             hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCC
Confidence            5333 245555555444433221 11               123667788888888877765443221      123445


Q ss_pred             ChHHHHHHHHHHHhh
Q psy16214        201 KMDLAVNHFQLLLKL  215 (470)
Q Consensus       201 ~~~~A~~~~~~~l~~  215 (470)
                      + .+|+.+---.+..
T Consensus       401 D-SEAiaYAf~hL~h  414 (539)
T PF04184_consen  401 D-SEAIAYAFFHLQH  414 (539)
T ss_pred             c-HHHHHHHHHHHHH
Confidence            4 5666655444443

The molecular function of this protein is uncertain.

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.12  E-value=3.2e-06  Score=48.19  Aligned_cols=32  Identities=25%  Similarity=0.445  Sum_probs=27.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16214        293 CTLALEKDPNYLKALSRRCKCFHALGQYKECV  324 (470)
Q Consensus       293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  324 (470)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67888888888888888888888888888875

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.11  E-value=0.00053  Score=63.73  Aligned_cols=96  Identities=14%  Similarity=0.064  Sum_probs=74.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK-DPNYLKALSRRCKCFHA-  316 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~-  316 (470)
                      +.+..+.|+.++|++.++..++..|...  ...++.++..+++.++.|.++...+.+.-++ -|+.+...+..|.+..+ 
T Consensus       266 AmCarklGr~~EAIk~~rdLlke~p~~~--~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa  343 (539)
T PF04184_consen  266 AMCARKLGRLREAIKMFRDLLKEFPNLD--NLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA  343 (539)
T ss_pred             HHHHHHhCChHHHHHHHHHHHhhCCccc--hhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence            8899999999999999999998877533  3468999999999999999999999886544 36666666666554433 


Q ss_pred             hCC---------------HHHHHHHHHHHHhcCCC
Q psy16214        317 LGQ---------------YKECVIDAEKIYKMDNS  336 (470)
Q Consensus       317 ~g~---------------~~~A~~~~~~a~~~~p~  336 (470)
                      .++               -..|++.+.+|++.+|-
T Consensus       344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence            121               23577889999999985

The molecular function of this protein is uncertain.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=98.09  E-value=0.0064  Score=54.67  Aligned_cols=233  Identities=13%  Similarity=0.063  Sum_probs=144.4

Q ss_pred             HHcCChHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC----C---CC--
Q psy16214         83 IALGDAPTARSNLKALQELD-PDNPAIAQESKALETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQG----V---AS--  151 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~----p---~~--  151 (470)
                      ...|+.+.|..++.++-... ..++.....++.+.     +.-+...+..+ +++.|+.+++++.+.-    +   ..  
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~-----yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~   78 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC-----YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD   78 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH-----HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence            46788899999998887766 55666666666663     55666688888 9999999999998772    1   11  


Q ss_pred             -----HHHHHHHHHHHHHcCCHH---HHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC-ChHHH
Q psy16214        152 -----KTYKLMKAECLAHLNRLQ---EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP-DHAKA  222 (470)
Q Consensus       152 -----~~~~~~~a~~~~~~~~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~  222 (470)
                           ..++..++.++...+.++   +|...++.+-...|+.+..+...-.+....++.+.+...+.+++..-+ .....
T Consensus        79 ~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~  158 (278)
T PF08631_consen   79 GSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF  158 (278)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence                 245677888998887754   566666677777888888887666777778999999999999987654 22222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHH--HHHHHHHHH
Q psy16214        223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEA--IADCTLALE  298 (470)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~~~al~  298 (470)
                      ...+.           ..-.+.......|...+...+..  .|........+...+-......++....  ++.....+.
T Consensus       159 ~~~l~-----------~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~  227 (278)
T PF08631_consen  159 DSILH-----------HIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLS  227 (278)
T ss_pred             HHHHH-----------HHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHH
Confidence            22221           11112223456677777776643  2221101112222222222222222222  333322222


Q ss_pred             ----h--CCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16214        299 ----K--DPNY-------LKALSRRCKCFHALGQYKECVIDAEKIY  331 (470)
Q Consensus       299 ----~--~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~  331 (470)
                          .  .|-.       ...+.+.|...++.++|++|..+|+-++
T Consensus       228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence                1  2222       2346677999999999999999999776

It is also involved in sporulation [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.09  E-value=3.6e-06  Score=47.97  Aligned_cols=32  Identities=22%  Similarity=0.219  Sum_probs=17.0

Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         61 AKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        61 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            44555555555555555555555555555543

>KOG2300|consensus

Probab=98.08  E-value=0.009  Score=55.40  Aligned_cols=324  Identities=14%  Similarity=0.073  Sum_probs=188.5

Q ss_pred             hHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCC---HHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214         38 AAYYGNRAACYMMLG--MYTYALDDAKLAVSLDPRF---SKGLIRQIKCN-IALGDAPTARSNLKALQELDPDNPAIAQE  111 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  111 (470)
                      +.++..+|..+...+  +...++++++......|.+   +..+..+|.++ ....+.+.|...++++..+...-+..+..
T Consensus         7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv   86 (629)
T KOG2300|consen    7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV   86 (629)
T ss_pred             HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence            456677778888888  7888888888888877765   44566676654 45778888998888888765544433221


Q ss_pred             HHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHhhc-CCCC
Q psy16214        112 SKALETMAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVASKT----YKLMKAECLAHLNRLQEAQEIANSILAT-DKQN  185 (470)
Q Consensus       112 l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~p~~  185 (470)
                      .-..+..     .+..+... ..+..+...+.+++++....+.    ..+.++.++....++..|++.+.-.... ++..
T Consensus        87 Kf~a~Sl-----La~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~  161 (629)
T KOG2300|consen   87 KFQAASL-----LAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHIC  161 (629)
T ss_pred             hhHHHHH-----HHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhh
Confidence            1111111     11112222 2677778888888888766653    4566888888888999888875432211 1111


Q ss_pred             ---hHHHHHH--HHHHhccCC---hHHHHHHHHHHHhhCCChHHHHHH-------------------------HHHHHHH
Q psy16214        186 ---PDAVFVR--GLCLYYDDK---MDLAVNHFQLLLKLAPDHAKAKET-------------------------YKRAKLL  232 (470)
Q Consensus       186 ---~~~~~~l--a~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~-------------------------~~~~~~~  232 (470)
                         ..+.+.+  +.++...-+   ...+.....+..+....++.-...                         ++++...
T Consensus       162 ~~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~s  241 (629)
T KOG2300|consen  162 FPYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDS  241 (629)
T ss_pred             hHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHH
Confidence               1111111  222222222   222233233333222111111110                         0000000


Q ss_pred             HHHH-----------------------HH----HHHH-------HhcCCHHHHHHHHHHHHhhcccCcc----------c
Q psy16214        233 KAKK-----------------------EE----GNEK-------FVAGKNQEAFDIYTEALKIDARNIN----------I  268 (470)
Q Consensus       233 ~~~~-----------------------~~----~~~~-------~~~~~~~~A~~~~~~al~~~p~~~~----------~  268 (470)
                      ....                       -+    +.+|       ...|-+++|.++-++++......+.          .
T Consensus       242 iqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~  321 (629)
T KOG2300|consen  242 IQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMF  321 (629)
T ss_pred             HhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            0000                       00    1111       2346677888877777754222111          1


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChh
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEK---DPN-------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE  338 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  338 (470)
                      ....+-++..|-.-.|++.+|++....+.+.   .|.       .+..++.+|......+.++.|...|..|.++-.+.+
T Consensus       322 km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~d  401 (629)
T KOG2300|consen  322 KMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESID  401 (629)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHH
Confidence            2345667788888999999999888777664   454       256777888888889999999999999999887755


Q ss_pred             HHH--HHHHHHHHhhcccccchhhhccCCC
Q psy16214        339 NHN--FLEEAKRLLKRSEVKDYYKILGVTK  366 (470)
Q Consensus       339 ~~~--~l~~~~~~~~~~~~~~~y~~lg~~~  366 (470)
                      ...  .+.-+...+...+..++|++|..-.
T Consensus       402 l~a~~nlnlAi~YL~~~~~ed~y~~ld~i~  431 (629)
T KOG2300|consen  402 LQAFCNLNLAISYLRIGDAEDLYKALDLIG  431 (629)
T ss_pred             HHHHHHHhHHHHHHHhccHHHHHHHHHhcC
Confidence            543  3445566677778888998887543

>KOG1258|consensus

Probab=98.07  E-value=0.012  Score=56.31  Aligned_cols=56  Identities=16%  Similarity=0.082  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHH
Q psy16214         21 SKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLI   76 (470)
Q Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (470)
                      +.+...|...+...|.....|...|..-.++|..+.+++.|++++.--|.....|.
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~  117 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWL  117 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHH
Confidence            44445555566666666666666666666666666666666666666555444443

>KOG0530|consensus

Probab=98.07  E-value=0.002  Score=54.69  Aligned_cols=167  Identities=16%  Similarity=0.075  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChH-HHHHHHHH
Q psy16214        134 YRTAMFYLDRAMDQGVASKTYKLMKAECLAHL-NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD-LAVNHFQL  211 (470)
Q Consensus       134 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~~~  211 (470)
                      -..|+.+...++..+|.+-.+|..+-.++..+ .+..+-++++..++..+|.+..+|..+-.+....|++. .-+...+.
T Consensus        59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~  138 (318)
T KOG0530|consen   59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL  138 (318)
T ss_pred             CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHH
Confidence            34566666777777777777776666666554 35667778888888888888888888888887778777 77778888


Q ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH-cC-----C
Q psy16214        212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK-MG-----K  285 (470)
Q Consensus       212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~-~g-----~  285 (470)
                      ++..+..+.-+|...            -.+...-+.++.-+.+..+.++.+-.|.    .+|..+--+... .|     .
T Consensus       139 ~l~~DaKNYHaWshR------------qW~~r~F~~~~~EL~y~~~Lle~Di~NN----SAWN~Ryfvi~~~~~~~~~~~  202 (318)
T KOG0530|consen  139 MLDDDAKNYHAWSHR------------QWVLRFFKDYEDELAYADELLEEDIRNN----SAWNQRYFVITNTKGVISKAE  202 (318)
T ss_pred             HHhccccchhhhHHH------------HHHHHHHhhHHHHHHHHHHHHHHhhhcc----chhheeeEEEEeccCCccHHH
Confidence            888887777777766            5555566667777777777777655432    223332211111 11     2


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214        286 YNEAIADCTLALEKDPNYLKALSRRCKCFHA  316 (470)
Q Consensus       286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  316 (470)
                      .+.-+.+..+.|.+.|++..+|..+.-++..
T Consensus       203 le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  203 LERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            3445677778888899998888888777775

>KOG2610|consensus

Probab=98.06  E-value=0.00095  Score=58.66  Aligned_cols=159  Identities=15%  Similarity=0.027  Sum_probs=130.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh-CCChH---HHHHHHHHHHHH
Q psy16214        157 MKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL-APDHA---KAKETYKRAKLL  232 (470)
Q Consensus       157 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~---~~~~~~~~~~~~  232 (470)
                      ..+-++...|++.+|....+++++..|.+.-++..--.+++.+|+...-...+++++.. +|+-|   .+.-.+      
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy------  181 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY------  181 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH------
Confidence            34566778899999999999999999999998888888999999999999999999987 55543   333334      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----LKALS  308 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~  308 (470)
                            +-.+...|-|++|.+.-+++++++|.    ..++...++.++...+++.++.+...+.-..-...    ..-|.
T Consensus       182 ------aFgL~E~g~y~dAEk~A~ralqiN~~----D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyW  251 (491)
T KOG2610|consen  182 ------AFGLEECGIYDDAEKQADRALQINRF----DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYW  251 (491)
T ss_pred             ------HhhHHHhccchhHHHHHHhhccCCCc----chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhH
Confidence                  77788899999999999999999999    56788889999999999999999887643321111    33456


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHH
Q psy16214        309 RRCKCFHALGQYKECVIDAEKIY  331 (470)
Q Consensus       309 ~la~~~~~~g~~~~A~~~~~~a~  331 (470)
                      ..|.+++.-+.|+.|++.|.+-+
T Consensus       252 H~Al~~iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  252 HTALFHIEGAEYEKALEIYDREI  274 (491)
T ss_pred             HHHHhhhcccchhHHHHHHHHHH
Confidence            67889999999999999998654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.03  E-value=0.00027  Score=63.43  Aligned_cols=138  Identities=10%  Similarity=0.025  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCH
Q psy16214         74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-ANDYRTAMFYLDRAMDQGVASK  152 (470)
Q Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~  152 (470)
                      +|..+.....+.+..+.|..+|.++++..+....++...+.+            -+. .++.+.|..+|+.+++..|.+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~------------E~~~~~d~~~A~~Ife~glk~f~~~~   70 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALM------------EYYCNKDPKRARKIFERGLKKFPSDP   70 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHH------------HHHTCS-HHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHHhCCCHHHHHHHHHHHHHHCCCCH
Confidence            455555666666667777777777765444445554333332            233 4555557777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      .+|......+...++.+.|..+|++++..-|...   .+|......-...|+.+...++.+++.+..|+.....
T Consensus        71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~  144 (280)
T PF05843_consen   71 DFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE  144 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH
Confidence            7888888888889999999999999988766554   5777777777888999999999999999888855443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=98.00  E-value=0.013  Score=58.58  Aligned_cols=246  Identities=13%  Similarity=0.019  Sum_probs=157.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF--   71 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--   71 (470)
                      ++..-...+.......++.+|..+..++...-|.         .+......|.+....|++++|+...+.++..-|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            4555667788899999999999999888765433         24566678889999999999999999999987764  


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH--HHHHH----
Q psy16214         72 ---SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTA--MFYLD----  142 (470)
Q Consensus        72 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A--~~~~~----  142 (470)
                         ..++..+|.+..-.|++++|..+...+.+........+.      ........+..+..+|+...+  ...+.    
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l------~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~  567 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL------ALWSLLQQSEILEAQGQVARAEQEKAFNLIRE  567 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence               456778899999999999999999988876433222111      111224445555666632222  22222    


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC----CCC--hH-HHHHHHHHHhccCChHHHHHHHHHHHhh
Q psy16214        143 RAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD----KQN--PD-AVFVRGLCLYYDDKMDLAVNHFQLLLKL  215 (470)
Q Consensus       143 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~  215 (470)
                      +-+...|........++.++..--+++.+.......++..    |..  +. +++.++.+.+..|+.++|...+..+..+
T Consensus       568 q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l  647 (894)
T COG2909         568 QHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL  647 (894)
T ss_pred             HHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            2223344444444445555554444676666666655442    222  22 2347899999999999999999988775


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214        216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL  259 (470)
Q Consensus       216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  259 (470)
                      -.....-......+..+     .......+|+...|.....+..
T Consensus       648 ~~~~~~~~~~~a~~~~v-----~~~lwl~qg~~~~a~~~l~~s~  686 (894)
T COG2909         648 LLNGQYHVDYLAAAYKV-----KLILWLAQGDKELAAEWLLKSG  686 (894)
T ss_pred             hcCCCCCchHHHHHHHh-----hHHHhcccCCHHHHHHHHHhcc
Confidence            43331111111111111     2455567788888888877743

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.4e-05  Score=45.79  Aligned_cols=32  Identities=31%  Similarity=0.563  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPN   36 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~   36 (470)
                      +.|+.+|.+++..|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34455555555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.98  E-value=0.0057  Score=56.17  Aligned_cols=186  Identities=12%  Similarity=-0.029  Sum_probs=133.6

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHH-HHhcCCCChHH
Q psy16214         37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSL----DPRFSKGLIRQIKCNIA---LGDAPTARSNLKA-LQELDPDNPAI  108 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-~l~~~p~~~~~  108 (470)
                      +++...++=.+|....+|+.-+...+..-.+    -++.+...+.+|.++-+   .|+.++|+..+.. +....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4677788888999999999999999887766    45567788899999999   9999999999999 55667788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh--------h
Q psy16214        109 AQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL--------A  180 (470)
Q Consensus       109 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l--------~  180 (470)
                      +..+|.++...-  ..+ ..-.....++|+..|.++....|+. ..=.+++.++...|.-.+....+.++.        +
T Consensus       220 ~gL~GRIyKD~~--~~s-~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~  295 (374)
T PF13281_consen  220 LGLLGRIYKDLF--LES-NFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR  295 (374)
T ss_pred             HHHHHHHHHHHH--HHc-CccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence            999999976541  111 0112334899999999999999654 334456667776665433332222221        1


Q ss_pred             c----CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        181 T----DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       181 ~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      .    .-.+...+-.++.+....|++++|+..+++++++.|........+
T Consensus       296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~  345 (374)
T PF13281_consen  296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTL  345 (374)
T ss_pred             hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHH
Confidence            1    112334455667777889999999999999999987765544333

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.98  E-value=0.002  Score=52.38  Aligned_cols=105  Identities=19%  Similarity=0.105  Sum_probs=82.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA  316 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  316 (470)
                      ..+..+...+++++|+..++.++.... +..+.+.+-.+++.+...+|.+++|+..+...... .-.+..-..+|.++..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~-De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~  171 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTK-DENLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccch-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHH
Confidence            348889999999999999999886543 33335677888999999999999999988764321 1123446678999999


Q ss_pred             hCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214        317 LGQYKECVIDAEKIYKMDNSRENHNFL  343 (470)
Q Consensus       317 ~g~~~~A~~~~~~a~~~~p~~~~~~~l  343 (470)
                      .|+.++|+..|+++++..+++...+.+
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s~~~~~~l  198 (207)
T COG2976         172 KGDKQEARAAYEKALESDASPAAREIL  198 (207)
T ss_pred             cCchHHHHHHHHHHHHccCChHHHHHH
Confidence            999999999999999998776655555

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.96  E-value=0.00029  Score=56.67  Aligned_cols=95  Identities=16%  Similarity=0.126  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----------------------hHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------------AAYYGNRAACYMMLGMYTYALDDAKL   63 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~g~~~~A~~~~~~   63 (470)
                      .+...|......++...++..+.+++.+....                      ..+...++..+...|++++|+..+++
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            44556777788899999999999999874221                      34556677788899999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214         64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        64 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      ++..+|.+..++..+..+|...|+...|+..|.++..
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.96  E-value=1.9e-05  Score=45.31  Aligned_cols=31  Identities=35%  Similarity=0.561  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        272 LLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                      +|+++|.++..+|++++|+..|+++++++|+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            3455555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG3616|consensus

Probab=97.95  E-value=0.0043  Score=60.32  Aligned_cols=33  Identities=6%  Similarity=0.106  Sum_probs=28.5

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       302 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      ..+.++..++..+...|++++|.+.|-.+++++
T Consensus       993 k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             cCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            346778889999999999999999999998875

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.94  E-value=0.018  Score=53.98  Aligned_cols=270  Identities=17%  Similarity=0.050  Sum_probs=151.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH
Q psy16214         11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------DPRFSKGLIRQIKCN   82 (470)
Q Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~   82 (470)
                      +.+..+.|+|+.-.++....   ..+.+...+..+...+..++++++...++++...        .+......+..-.-+
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~---~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l   81 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQS---NEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL   81 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhc---cCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            56778889999833332222   1223466777777888999999999988887664        122222222222222


Q ss_pred             HHcCChHHHHHHHH-----------------HHHhcCCCChHHHHHHHHHHHH------------HHHHHHHHHHHhcCC
Q psy16214         83 IALGDAPTARSNLK-----------------ALQELDPDNPAIAQESKALETM------------AKNFEGASKAFEAND  133 (470)
Q Consensus        83 ~~~g~~~~A~~~~~-----------------~~l~~~p~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~  133 (470)
                      ..+.+.+++.....                 .=+...+++...+..+-.+...            ......|....+.|.
T Consensus        82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~  161 (352)
T PF02259_consen   82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGN  161 (352)
T ss_pred             hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCC
Confidence            22334444444331                 1122234455555443333221            123445566677899


Q ss_pred             HHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC-C--hHHHHHHHHHHhccCChHHHH
Q psy16214        134 YRTAMFYLDRAMDQGV----ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ-N--PDAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       134 ~~~A~~~~~~~l~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~--~~~~~~la~~~~~~g~~~~A~  206 (470)
                      ++.|...+.++....+    ..+.+.+..+.++...|+..+|+..++..+..... .  +.....+......        
T Consensus       162 ~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--------  233 (352)
T PF02259_consen  162 FQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE--------  233 (352)
T ss_pred             cHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc--------
Confidence            9999999999988652    25678888999999999999999999998873221 1  1111111100000        


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA------GKNQEAFDIYTEALKIDARNININSKLLHNRATVL  280 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~  280 (470)
                       .+........ ........     ...+...|......      +..++++..|.+++..+|.    ...+|...|..+
T Consensus       234 -~~~~~~~~~~-~~~~~~~~-----a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~k~~~~~a~~~  302 (352)
T PF02259_consen  234 -SLEVISSTNL-DKESKELK-----AKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS----WEKAWHSWALFN  302 (352)
T ss_pred             -ccccccccch-hhhhHHHH-----HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh----HHHHHHHHHHHH
Confidence             0000000000 00000000     01111124444444      8889999999999999998    456788777766


Q ss_pred             HHcCC-----------------HHHHHHHHHHHHHhCCC
Q psy16214        281 FKMGK-----------------YNEAIADCTLALEKDPN  302 (470)
Q Consensus       281 ~~~g~-----------------~~~A~~~~~~al~~~p~  302 (470)
                      ...=+                 ...|+..|-+++...+.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            54421                 13477777788877776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.92  E-value=2.2e-05  Score=45.01  Aligned_cols=32  Identities=28%  Similarity=0.518  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPN   36 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~   36 (470)
                      +.|+.+|.+++..|+|++|+.+|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            44555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.92  E-value=0.00099  Score=64.39  Aligned_cols=162  Identities=14%  Similarity=0.080  Sum_probs=117.3

Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH--H--hcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA--F--EANDYRTAMFYLDRAMDQGVASKTYKLMKA  159 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~--~--~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  159 (470)
                      -.||-+.++..+.++.+ .++-......+.-+.    .+.-....  .  .....+.|...+.......|+..-.++..|
T Consensus       200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~----y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~g  274 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLW----YHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEG  274 (468)
T ss_pred             cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHH----HHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            35888999999998876 222222111111110    01000111  1  456788999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQN----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK  235 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  235 (470)
                      +++...|+.++|++.+++++.....-    .-.++.++.++..+.+|++|..++.++.+.+.-+...+..+         
T Consensus       275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~---------  345 (468)
T PF10300_consen  275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL---------  345 (468)
T ss_pred             HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHH---------
Confidence            99999999999999999988543332    23688999999999999999999999999766655444433         


Q ss_pred             HHHHHHHHhcCCH-------HHHHHHHHHHHhh
Q psy16214        236 KEEGNEKFVAGKN-------QEAFDIYTEALKI  261 (470)
Q Consensus       236 ~~~~~~~~~~~~~-------~~A~~~~~~al~~  261 (470)
                        .|.++...++.       ++|.+++.++-..
T Consensus       346 --~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  346 --AAACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             --HHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence              37888888888       7777777776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.0013  Score=57.07  Aligned_cols=151  Identities=19%  Similarity=0.076  Sum_probs=102.8

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      ...-+..+.-....|++.+|...+..++...|.+..+...++.||...|+.+.|...+...-....+. ......+    
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a----  208 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQA----  208 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHH----
Confidence            44456667788889999999999999999999999999999999999999999988887643222111 1111011    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChHHHHHHHHH
Q psy16214        118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ--NPDAVFVRGLC  195 (470)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~  195 (470)
                         +.+.....-..++.    ..+.+.+..+|++..+.+.+|..+...|+.++|++.+-..++.+..  +..+...+-.+
T Consensus       209 ---~i~ll~qaa~~~~~----~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~  281 (304)
T COG3118         209 ---QIELLEQAAATPEI----QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLEL  281 (304)
T ss_pred             ---HHHHHHHHhcCCCH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence               11111112222222    2345667778999999999999999999999999999888876543  33344444444


Q ss_pred             HhccC
Q psy16214        196 LYYDD  200 (470)
Q Consensus       196 ~~~~g  200 (470)
                      +...|
T Consensus       282 f~~~g  286 (304)
T COG3118         282 FEAFG  286 (304)
T ss_pred             HHhcC
Confidence            44444

>KOG0530|consensus

Probab=97.88  E-value=0.012  Score=50.12  Aligned_cols=182  Identities=13%  Similarity=0.025  Sum_probs=128.6

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH-HHH
Q psy16214         15 YKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP-TAR   92 (470)
Q Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~   92 (470)
                      .....-..|+.+-..+|.++|.+..+|..+-.++..++ +..+-++.+..+++-+|.+...|...-.+...+|++. .-+
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL  133 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence            34456689999999999999999999988888887765 6778889999999999999999999999999999988 888


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hc------------------------CCHHHHHHHHHHH
Q psy16214         93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF----EA------------------------NDYRTAMFYLDRA  144 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~----~~------------------------~~~~~A~~~~~~~  144 (470)
                      +....++..+.+|-.+|.....+....+.++.-..+.    ..                        -..+.-+.+..+.
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~  213 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDK  213 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHH
Confidence            9999999999999999888777766655554433321    11                        1233445566667


Q ss_pred             HHhCCCCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHh-hcCCCChHHHHHHHHHH
Q psy16214        145 MDQGVASKTYKLMKAECLAH-LN--RLQEAQEIANSIL-ATDKQNPDAVFVRGLCL  196 (470)
Q Consensus       145 l~~~p~~~~~~~~~a~~~~~-~~--~~~~A~~~~~~~l-~~~p~~~~~~~~la~~~  196 (470)
                      +...|++..+|..+.-++.. .|  .+.+.......++ .....+|..+-.+..++
T Consensus       214 I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~  269 (318)
T KOG0530|consen  214 ILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY  269 (318)
T ss_pred             HHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence            77777777777776666664 33  2334444444443 22233344444444333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.87  E-value=0.022  Score=52.55  Aligned_cols=141  Identities=11%  Similarity=0.017  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVA-----AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      +.-.|-.+.+++++.+|...|.++.+...+.+     +++.++-...+-+.+.+.-...+...-+..|+.+....-.|..
T Consensus         9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~   88 (549)
T PF07079_consen    9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALV   88 (549)
T ss_pred             HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            45678899999999999999999987654442     4455555555566777766666666667788888888889999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHH--HH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESK--AL-ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~--~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                      .++.+.+.+|++.+....+.-......+....  .+ ....-..-.|..+++.|.+.++...+++.+..
T Consensus        89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen   89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            99999999999998876654222222221111  10 01111234566778889999998888887754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.86  E-value=4.7e-05  Score=43.59  Aligned_cols=31  Identities=35%  Similarity=0.502  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        272 LLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                      +++.+|.++..+|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            4555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0985|consensus

Probab=97.85  E-value=0.026  Score=57.24  Aligned_cols=238  Identities=13%  Similarity=0.040  Sum_probs=126.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q psy16214         10 DGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP   89 (470)
Q Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   89 (470)
                      .|......+-|++|...|.+. ..+   ..+.   -...-..+..+.|.++.+++     +.+..|..+|.+..+.|...
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf-~~n---~~A~---~VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-DMN---VSAI---QVLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHh-ccc---HHHH---HHHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence            456666667777777777653 111   1111   11112345555555555554     34667777777777777777


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------
Q psy16214         90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ----------------------  147 (470)
Q Consensus        90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----------------------  147 (470)
                      +|++.|-++     +++..+.....+.            -+.|.|++-+.++.-+.+.                      
T Consensus      1122 dAieSyika-----dDps~y~eVi~~a------------~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVA------------SRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTE 1184 (1666)
T ss_pred             HHHHHHHhc-----CCcHHHHHHHHHH------------HhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHH
Confidence            777777665     3444443333332            2234444444443333222                      


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH
Q psy16214        148 ------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK  221 (470)
Q Consensus       148 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  221 (470)
                            .|+...+ ...|.-++..+.|+.|.-+|..        ..-|-.++..+..+|+|..|...-+++-.     ..
T Consensus      1185 lE~fi~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns-----~k 1250 (1666)
T KOG0985|consen 1185 LEEFIAGPNVANI-QQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANS-----TK 1250 (1666)
T ss_pred             HHHHhcCCCchhH-HHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccc-----hh
Confidence                  2333222 2245555555556555555543        23456677777777888877777766533     22


Q ss_pred             HHHHHHHHH------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc
Q psy16214        222 AKETYKRAK------------------LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM  283 (470)
Q Consensus       222 ~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~  283 (470)
                      .|.......                  -....-+....|...|-+++-+.+++.++-+...    ....+..+|.+|.+-
T Consensus      1251 tWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERA----HMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERA----HMGMFTELAILYSKY 1326 (1666)
T ss_pred             HHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHH----HHHHHHHHHHHHHhc
Confidence            222211110                  1223334456667777788888888877776655    334466667666543


Q ss_pred             CCHHHHHHHHHH
Q psy16214        284 GKYNEAIADCTL  295 (470)
Q Consensus       284 g~~~~A~~~~~~  295 (470)
                       ++++-.++++-
T Consensus      1327 -kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1327 -KPEKMMEHLKL 1337 (1666)
T ss_pred             -CHHHHHHHHHH
Confidence             35555555543

>KOG4507|consensus

Probab=97.83  E-value=0.0056  Score=58.01  Aligned_cols=99  Identities=11%  Similarity=-0.037  Sum_probs=84.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNV--AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      ..-+-.+..+|+..+|+.++..++-..|..  ..++..+|.++.+.|...+|--.+..|+.-.|....-++-++.++..+
T Consensus       217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml  296 (886)
T KOG4507|consen  217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAML  296 (886)
T ss_pred             HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHH
Confidence            333444556899999999999999887654  457889999999999999999999999988887777799999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCCh
Q psy16214         86 GDAPTARSNLKALQELDPDNP  106 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~  106 (470)
                      +++.....+|..+.+..|...
T Consensus       297 ~~~N~S~~~ydha~k~~p~f~  317 (886)
T KOG4507|consen  297 GEYNHSVLCYDHALQARPGFE  317 (886)
T ss_pred             hhhhhhhhhhhhhhccCcchh
Confidence            999999999999998888654

>KOG0985|consensus

Probab=97.81  E-value=0.015  Score=58.81  Aligned_cols=244  Identities=13%  Similarity=0.056  Sum_probs=144.2

Q ss_pred             hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16214         16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL   95 (470)
Q Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~   95 (470)
                      ..++.+.|.++-+++     +.+..|..+|.+.+..|...+|++.|-++     +++..|.....+..+.|.|++-+.++
T Consensus      1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred             HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence            346667777766665     45778888888888888888888888654     45667777777888888888888887


Q ss_pred             HHHHhcCCC---ChHHHHHHHHHHHHH------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214         96 KALQELDPD---NPAIAQESKALETMA------------KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAE  160 (470)
Q Consensus        96 ~~~l~~~p~---~~~~~~~l~~~~~~~------------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  160 (470)
                      .-+-+....   +.+....++......            .--.-+..+++.+.|+.|.-+|...        .-+..+|.
T Consensus      1157 ~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~ 1228 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLAS 1228 (1666)
T ss_pred             HHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHH
Confidence            776653221   112222222211100            0112234566777787777666543        44667888


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcCC-------------------------CChHHHHHHHHHHhccCChHHHHHHHHHHHhh
Q psy16214        161 CLAHLNRLQEAQEIANSILATDK-------------------------QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL  215 (470)
Q Consensus       161 ~~~~~~~~~~A~~~~~~~l~~~p-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  215 (470)
                      .+..+|+|+.|....+++-....                         -+++-+-.+...|...|-+++-+..++.++-+
T Consensus      1229 TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred             HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence            99999999999988887632100                         01222334445556667777777777777666


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCcc--chHHHHHHHHHHHHHcCCHHHHH
Q psy16214        216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID--ARNIN--INSKLLHNRATVLFKMGKYNEAI  290 (470)
Q Consensus       216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~--~~~~~~~~la~~~~~~g~~~~A~  290 (470)
                      ...+......+            |..|. .=++++-.++++-....-  |.-..  -.+.+|..+--+|.+-..|+.|.
T Consensus      1309 ERAHMgmfTEL------------aiLYs-kykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1309 ERAHMGMFTEL------------AILYS-KYKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             hHHHHHHHHHH------------HHHHH-hcCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            55444433333            44443 344555555554433211  11000  03466777777777777777663

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.75  E-value=0.029  Score=50.48  Aligned_cols=155  Identities=16%  Similarity=0.069  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CChHHHHHHHHH-HhccCChHHHHHHHH
Q psy16214        133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK-QNPDAVFVRGLC-LYYDDKMDLAVNHFQ  210 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~-~~~~g~~~~A~~~~~  210 (470)
                      ..++|...++.+....|+.+.++...-.++...++.+++.+.+.+++..-+ .....-..+..+ .........|...+.
T Consensus       102 ~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld  181 (278)
T PF08631_consen  102 SVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLD  181 (278)
T ss_pred             HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHH
Confidence            345677777777788899888887777888888999999999999988654 222221112222 122344566777776


Q ss_pred             HHHhh--CCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--C------HHHHHHHHHHHHhh--cccCcc---chHHHHHH
Q psy16214        211 LLLKL--APDHAKAKETYKRAKLLKAKKEEGNEKFVAG--K------NQEAFDIYTEALKI--DARNIN---INSKLLHN  275 (470)
Q Consensus       211 ~~l~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~A~~~~~~al~~--~p~~~~---~~~~~~~~  275 (470)
                      ..+..  .|.... +...  +..       -.++...+  +      .+.....++...+.  .|-++.   ....++.+
T Consensus       182 ~~l~~r~~~~~~~-~~e~--~vl-------~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~  251 (278)
T PF08631_consen  182 YLLLNRFKSSEDQ-WLEK--LVL-------TRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWN  251 (278)
T ss_pred             HHHHHHhCCChhH-HHHH--HHH-------HHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            66652  333221 1111  000       11111111  1      22333333322111  111111   11255667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q psy16214        276 RATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       276 la~~~~~~g~~~~A~~~~~~al  297 (470)
                      .|...++.++|.+|+.+|+-++
T Consensus       252 ~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  252 KGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHhhcCHHHHHHHHHHHH
Confidence            7999999999999999999776

It is also involved in sporulation [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=0.0029  Score=55.10  Aligned_cols=53  Identities=30%  Similarity=0.409  Sum_probs=26.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214        125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS  177 (470)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~  177 (470)
                      +...+..+++.+|...+..++...|.+..+...+++|+...|+.+.|...+..
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            33444445555555555555555555555555555555555555555444443

>KOG3783|consensus

Probab=97.68  E-value=0.011  Score=55.85  Aligned_cols=252  Identities=13%  Similarity=0.043  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214         21 SKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQIKCNIALGDAPTARSNLK   96 (470)
Q Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~   96 (470)
                      +...+.+.......|+++......+..+...|+.+.|+..++..++  +..    .-.++.+|.++..+.+|..|...+.
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~  327 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD  327 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            3444555555567888888889999999999998888888888776  322    2356778888888999999999998


Q ss_pred             HHHhcCCCChHHHHHHH-HHHHHHHHHHHHHHHHhcCCHHHHHHHHH---HHHHhCCCCHHH---HHHHHHHHHHcCCHH
Q psy16214         97 ALQELDPDNPAIAQESK-ALETMAKNFEGASKAFEANDYRTAMFYLD---RAMDQGVASKTY---KLMKAECLAHLNRLQ  169 (470)
Q Consensus        97 ~~l~~~p~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~---~~l~~~p~~~~~---~~~~a~~~~~~~~~~  169 (470)
                      .+.+.+.-....+..++ -++......    .....++-+.|-.+.+   ..+...|.+..+   ....+.-+...+.  
T Consensus       328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~----~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~--  401 (546)
T KOG3783|consen  328 LLRDESDWSHAFYTYFAGCCLLQNWEV----NQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP--  401 (546)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHhccHHH----HHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc--
Confidence            88876655444444333 221110000    0011123333333222   223333332221   1112222211110  


Q ss_pred             HHHHHHHHHhhcCCCChH--HHHHHHHHHh--ccCChHHHHHHHHHHHh---h-CCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214        170 EAQEIANSILATDKQNPD--AVFVRGLCLY--YDDKMDLAVNHFQLLLK---L-APDHAKAKETYKRAKLLKAKKEEGNE  241 (470)
Q Consensus       170 ~A~~~~~~~l~~~p~~~~--~~~~la~~~~--~~g~~~~A~~~~~~~l~---~-~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (470)
                                 .++..+.  .++.++.++.  .....++.. -++..+.   . ++++.-....+           +|.+
T Consensus       402 -----------~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL-----------~g~~  458 (546)
T KOG3783|consen  402 -----------LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLL-----------KGVI  458 (546)
T ss_pred             -----------ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHH-----------HHHH
Confidence                       1111111  1233333321  111222222 1111111   2 33433333332           4888


Q ss_pred             HHhcCCHHHHHHHHHHHHh---hcccCccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q psy16214        242 KFVAGKNQEAFDIYTEALK---IDARNININSKLLHNRATVLFKMGK-YNEAIADCTLALEKDPNY  303 (470)
Q Consensus       242 ~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~  303 (470)
                      +...|+...|..+|..++.   ....++...+.+++.+|..+..++. ..++..++.+|-....++
T Consensus       459 lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY  524 (546)
T KOG3783|consen  459 LRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY  524 (546)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence            8889999999888888773   3344444556788888888888888 888888888887765443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.0061  Score=49.67  Aligned_cols=95  Identities=25%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH-HHHHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK-AKETYKRAKL  231 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~~~~~~~  231 (470)
                      ..+|..+...+++++|+..++.++....+.   +-+-..++.+....|.+++|+..+...-..  .... ....      
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~w~~~~~el------  164 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--SWAAIVAEL------  164 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--cHHHHHHHH------
Confidence            345566666666666666666666432221   224455666666666666666665433211  1111 1111      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214        232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  264 (470)
                            +|.++...|+-++|...|++++...++
T Consensus       165 ------rGDill~kg~k~~Ar~ay~kAl~~~~s  191 (207)
T COG2976         165 ------RGDILLAKGDKQEARAAYEKALESDAS  191 (207)
T ss_pred             ------hhhHHHHcCchHHHHHHHHHHHHccCC
Confidence                  266666666666666666666666533

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.62  E-value=0.055  Score=50.09  Aligned_cols=122  Identities=16%  Similarity=0.211  Sum_probs=79.7

Q ss_pred             HHHHhccCC-hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHH---------h
Q psy16214        193 GLCLYYDDK-MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFD--IYTEAL---------K  260 (470)
Q Consensus       193 a~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al---------~  260 (470)
                      |.-+...|. -++|+..++.+++..|.+..+....              ..+-...|.+|+.  .+.+.+         .
T Consensus       386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--------------~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g  451 (549)
T PF07079_consen  386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--------------FLFVKQAYKQALSMHAIPRLLKLEDFITEVG  451 (549)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            334455565 7788999999998888877654332              1111112222221  111111         1


Q ss_pred             hcccCccchHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        261 IDARNININSKLLHNR--ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       261 ~~p~~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                      +.|-... ...+-..+  |..++..|+|.++.-+..=..++.| ++.++..+|.|+....+|++|..++...
T Consensus       452 l~~i~i~-e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  452 LTPITIS-EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             CCccccc-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            2222211 23444444  4457789999999999988889999 7999999999999999999999998754

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.53  E-value=0.0083  Score=55.08  Aligned_cols=135  Identities=13%  Similarity=0.024  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc---cCChHHHHHHHH
Q psy16214        134 YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY---DDKMDLAVNHFQ  210 (470)
Q Consensus       134 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~  210 (470)
                      .+.-+.+|++|++.+|++..++..+-.+....-+.++..+.+++++..+|+++..|...-.....   .-.++.....|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999888766544433   345778888888


Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHH
Q psy16214        211 LLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAI  290 (470)
Q Consensus       211 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (470)
                      +++..-.....                 +.    ... .......+.          ....++..++......|-.+.|+
T Consensus       127 ~~l~~L~~~~~-----------------~~----~~~-~~~~~~~e~----------~~l~v~~r~~~fl~~aG~~E~Av  174 (321)
T PF08424_consen  127 KCLRALSRRRS-----------------GR----MTS-HPDLPELEE----------FMLYVFLRLCRFLRQAGYTERAV  174 (321)
T ss_pred             HHHHHHHHhhc-----------------cc----ccc-ccchhhHHH----------HHHHHHHHHHHHHHHCCchHHHH
Confidence            87763221110                 00    000 000000000          02345777777788888888888


Q ss_pred             HHHHHHHHhC
Q psy16214        291 ADCTLALEKD  300 (470)
Q Consensus       291 ~~~~~al~~~  300 (470)
                      ..++-.++++
T Consensus       175 a~~Qa~lE~n  184 (321)
T PF08424_consen  175 ALWQALLEFN  184 (321)
T ss_pred             HHHHHHHHHH
Confidence            8888888875

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.52  E-value=0.017  Score=53.13  Aligned_cols=167  Identities=14%  Similarity=0.087  Sum_probs=118.9

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214        139 FYLDRAMDQGVASKTYKLMKAECLAHLNR------------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       139 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  206 (470)
                      ..+++.++.+|.+...|..++...-..-.            .+.-+.+|++|++.+|++...+..+-.+.....+.++..
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45778889999999999988876554422            456788999999999999999988888888888999999


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY  286 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~  286 (470)
                      +.+++++..+|++...|..+-..         -...+..-.+......|.+++..-......    .         ....
T Consensus        86 ~~we~~l~~~~~~~~LW~~yL~~---------~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~----~---------~~~~  143 (321)
T PF08424_consen   86 KKWEELLFKNPGSPELWREYLDF---------RQSNFASFTVSDVRDVYEKCLRALSRRRSG----R---------MTSH  143 (321)
T ss_pred             HHHHHHHHHCCCChHHHHHHHHH---------HHHHhccCcHHHHHHHHHHHHHHHHHhhcc----c---------cccc
Confidence            99999999999999988765111         111123345677777777776543321100    0         0000


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                       ......+      .....++.++...+...|-.+.|+..++..++++
T Consensus       144 -~~~~~~e------~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  144 -PDLPELE------EFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             -cchhhHH------HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence             1111111      1125677888999999999999999999999986

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.52  E-value=0.013  Score=43.35  Aligned_cols=95  Identities=17%  Similarity=0.243  Sum_probs=73.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCcc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNIN--------INSKLLHNRATVLFKMGKYNEAIADCTLALEK-------DPNY  303 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~  303 (470)
                      |.-.+..|-|++|...+++++....+-|.        ..+.++..|+.++..+|+|++++....+++..       +.+.
T Consensus        16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde   95 (144)
T PF12968_consen   16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE   95 (144)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence            66667789999999999999976543322        24577888999999999999998888888753       4444


Q ss_pred             ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        304 ----LKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       304 ----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                          +.+.+.++..+..+|+.++|+..|+++-++
T Consensus        96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                455677899999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG0890|consensus

Probab=97.49  E-value=0.25  Score=55.17  Aligned_cols=302  Identities=14%  Similarity=0.081  Sum_probs=162.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCC--c--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          9 EDGNTQYKLKQYSKALKCYSEAISVCP--N--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~--~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      .+|.+-++.+.|.+|+.++++- ...+  .  ....+..+=.+|...++++.-.-.... ...+|+    ....-..+..
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s----l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS----LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc----HHHHHHHHHh
Confidence            5778888999999999999984 2211  1  133444455588888888776655543 222332    3344556677


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT-YKLMKAECLA  163 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~~a~~~~  163 (470)
                      .|++..|..+|+++++.+|+........-..            .+..+.+...+...+-.....++... .......+..
T Consensus      1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~s------------ml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW 1529 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKS------------MLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAW 1529 (2382)
T ss_pred             hccHHHHHHHHHHhhcCCCccccchhhHHHh------------hhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHh
Confidence            8999999999999999998866443322222            33344455555544444433333222 2222233445


Q ss_pred             HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChH-----HHHHHHHHHH-------hhCCChHHHHHHHHHHHH
Q psy16214        164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD-----LAVNHFQLLL-------KLAPDHAKAKETYKRAKL  231 (470)
Q Consensus       164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~-----~A~~~~~~~l-------~~~p~~~~~~~~~~~~~~  231 (470)
                      ..++|+.-..+..   ..+-.+..+.. +|.+.+...+-+     +.++..+..+       .........+..+-++..
T Consensus      1530 ~l~qwD~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~ 1605 (2382)
T KOG0890|consen 1530 RLSQWDLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHL 1605 (2382)
T ss_pred             hhcchhhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHH
Confidence            5555555444433   11111111111 233322221111     0111100000       000000001111000000


Q ss_pred             HH-----------------------HHHHHHHHHHhcCCHHHHHHHHHHHH---hhcccCccchHHHHHHHHHHHHHcCC
Q psy16214        232 LK-----------------------AKKEEGNEKFVAGKNQEAFDIYTEAL---KIDARNININSKLLHNRATVLFKMGK  285 (470)
Q Consensus       232 ~~-----------------------~~~~~~~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~~~la~~~~~~g~  285 (470)
                      ..                       .+..+...-....+..+-+-.+++++   ..+|+-....+..|...|++....|+
T Consensus      1606 l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~ 1685 (2382)
T KOG0890|consen 1606 LLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGH 1685 (2382)
T ss_pred             HHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhccc
Confidence            00                       00000111111112334444445544   23444333367899999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      ++.|...+-+|.+..  -+.++..+|..+...|+-..|+..+++.++.+
T Consensus      1686 ~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1686 LQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            999999999998876  57899999999999999999999999999664

>KOG1310|consensus

Probab=97.48  E-value=0.00039  Score=64.66  Aligned_cols=105  Identities=32%  Similarity=0.302  Sum_probs=95.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMML---GMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      .++..+..|+-.+..+....|+..|.+++...|.....+.+++.++++.   |+.-.|+..+..+++++|...++++.|+
T Consensus       373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la  452 (758)
T KOG1310|consen  373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLA  452 (758)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHH
Confidence            4567788888888889999999999999999999999999999999885   5777899999999999999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCChH
Q psy16214         80 KCNIALGDAPTARSNLKALQELDPDNPA  107 (470)
Q Consensus        80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~  107 (470)
                      .++..++++.+|+.+...+....|.+..
T Consensus       453 ~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  453 RALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            9999999999999999998888886544

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.47  E-value=0.15  Score=51.41  Aligned_cols=204  Identities=14%  Similarity=0.072  Sum_probs=128.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-----hHH
Q psy16214        123 EGASKAFEANDYRTAMFYLDRAMDQGVA---------SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN-----PDA  188 (470)
Q Consensus       123 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~  188 (470)
                      ..|.......++.+|...+.++...-+.         .....-..|.+....|++++|++..+.++..-|.+     ..+
T Consensus       420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~  499 (894)
T COG2909         420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA  499 (894)
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence            3444556678888888888877665333         12455668889999999999999999999887765     346


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHH----hhc
Q psy16214        189 VFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN--QEAFDIYTEAL----KID  262 (470)
Q Consensus       189 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al----~~~  262 (470)
                      +..+|.+..-.|++++|..+...+.+..........      .+......+.++..+|+.  .+....+...-    ...
T Consensus       500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l------~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~  573 (894)
T COG2909         500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHL------ALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK  573 (894)
T ss_pred             hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            778899999999999999999988876332211111      112223346777777733  23333333222    112


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK----DPNY--LK-ALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      |.+.. ...++..+..++.+   ++.+..-....++.    .|..  .. +++.++.+....|+.++|...+.....+..
T Consensus       574 ~~~~f-~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~  649 (894)
T COG2909         574 PRHEF-LVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL  649 (894)
T ss_pred             ccchh-HHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            22111 12223333333333   66666666655554    2322  22 234789999999999999999988877654


Q ss_pred             C
Q psy16214        336 S  336 (470)
Q Consensus       336 ~  336 (470)
                      +
T Consensus       650 ~  650 (894)
T COG2909         650 N  650 (894)
T ss_pred             C
Confidence            3

>KOG1464|consensus

Probab=97.44  E-value=0.035  Score=47.64  Aligned_cols=234  Identities=14%  Similarity=0.069  Sum_probs=127.1

Q ss_pred             cCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214         51 LGMYTYALDDAKLAVSLDPRF----SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS  126 (470)
Q Consensus        51 ~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  126 (470)
                      ....++|+..|++++++.|.-    ..++-.+..++..++++++-.+.|.+.+..-.                       
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk-----------------------   96 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK-----------------------   96 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-----------------------
Confidence            347899999999999998765    45777888999999999999998888765110                       


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214        127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  206 (470)
                      .....+--++++...-..++...+ ...+         +.-|+..+..++.+-. ..-....-..+|.+++..+++.+-.
T Consensus        97 SAVTrNySEKsIN~IlDyiStS~~-m~LL---------Q~FYeTTL~ALkdAKN-eRLWFKTNtKLgkl~fd~~e~~kl~  165 (440)
T KOG1464|consen   97 SAVTRNYSEKSINSILDYISTSKN-MDLL---------QEFYETTLDALKDAKN-ERLWFKTNTKLGKLYFDRGEYTKLQ  165 (440)
T ss_pred             HHHhccccHHHHHHHHHHHhhhhh-hHHH---------HHHHHHHHHHHHhhhc-ceeeeeccchHhhhheeHHHHHHHH
Confidence            011111112222211111111100 0000         0012222222222211 0111223346888888888888777


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcC
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMG  284 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g  284 (470)
                      +.+++.-........--...+....+..+.-....|..+.+-..-..+|++++.+...  +|.+...+.-.=|..+++.|
T Consensus       166 KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg  245 (440)
T KOG1464|consen  166 KILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREG  245 (440)
T ss_pred             HHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccc
Confidence            7776665433221111011111111111222356777777777778889999876543  22222334444567788999


Q ss_pred             CHHHHHHHHHHHHHhC-----CCCHH--HHHHHHHHHHHhC
Q psy16214        285 KYNEAIADCTLALEKD-----PNYLK--ALSRRCKCFHALG  318 (470)
Q Consensus       285 ~~~~A~~~~~~al~~~-----p~~~~--~~~~la~~~~~~g  318 (470)
                      ++++|-..|=+|.+..     |....  -|.-+|..+++.|
T Consensus       246 ~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  246 EFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             hHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence            9999999888888753     32222  2444566665544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.42  E-value=0.00031  Score=40.08  Aligned_cols=30  Identities=30%  Similarity=0.432  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214        272 LLHNRATVLFKMGKYNEAIADCTLALEKDP  301 (470)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (470)
                      +|+.+|.++..+|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            344445555555555555555555554444

...

>KOG3616|consensus

Probab=97.40  E-value=0.16  Score=49.98  Aligned_cols=111  Identities=14%  Similarity=0.149  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214        271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLL  350 (470)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~  350 (470)
                      ..|-.++.-|...|+|+.|.+.|.++-        ....-...|-+.|+|++|.+.-.++.  .|..-+...+.+++..-
T Consensus       766 ~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedld  835 (1636)
T KOG3616|consen  766 GYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLD  835 (1636)
T ss_pred             ccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence            345667888888888888888887642        22334456777888888877766654  35455666777777665


Q ss_pred             hccccc---chhhhccCCCCCCH----HHHHHHHHHHHHHcCCCCCCC
Q psy16214        351 KRSEVK---DYYKILGVTKNASS----DDIKKAYRKRALVHHPDRHTN  391 (470)
Q Consensus       351 ~~~~~~---~~y~~lg~~~~~~~----~ei~~ay~~~~~~~~pd~~~~  391 (470)
                      +.++..   ..|-..|.+..+-.    .-.....-++..++|||.-.+
T Consensus       836 ehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~d  883 (1636)
T KOG3616|consen  836 EHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHD  883 (1636)
T ss_pred             hhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence            555432   33444444332210    001112346788999997655

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.37  E-value=0.039  Score=51.37  Aligned_cols=37  Identities=11%  Similarity=0.092  Sum_probs=31.1

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q psy16214        143 RAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL  179 (470)
Q Consensus       143 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  179 (470)
                      ..+..+|-..+.+..++.++..+|+...|.+++++++
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL   67 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL   67 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4457788888899999999999999988888888875

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0890|consensus

Probab=97.34  E-value=0.33  Score=54.34  Aligned_cols=291  Identities=10%  Similarity=-0.001  Sum_probs=161.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH-HHHHHcC
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI-KCNIALG   86 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g   86 (470)
                      ..+-......|+|..|..+|++++..+|+....+...-.+.+..+.+...+...+-.....++...-+..++ .+-..++
T Consensus      1453 ~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~ 1532 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLS 1532 (2382)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhc
Confidence            344445566788888888888888888888877777778888888888888877766665555544444433 3446666


Q ss_pred             ChHHHHHHHH--------------HHHhcCCCChHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----
Q psy16214         87 DAPTARSNLK--------------ALQELDPDNPAIA-QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ----  147 (470)
Q Consensus        87 ~~~~A~~~~~--------------~~l~~~p~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----  147 (470)
                      +++.-..+..              ..+.....+.-+. ..+.......  .+.....-..+.|..+.+++-++...    
T Consensus      1533 qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~--i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1533 QWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELV--IENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred             chhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHh--hhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            6665554432              0011111111111 1111110000  00000111112333444333332211    


Q ss_pred             ---------CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHh---hcC----CCChHHHHHHHHHHhccCChHHHH
Q psy16214        148 ---------GVAS-----KTYKLMKAECLAHLNRLQEAQEIANSIL---ATD----KQNPDAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       148 ---------~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l---~~~----p~~~~~~~~la~~~~~~g~~~~A~  206 (470)
                               .++.     ..-|.++...-....+..+-+-.+++++   ..+    ....+.|...|.+....|+++.|.
T Consensus      1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred             HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence                     1111     1122222221111122333333333332   223    234678999999999999999999


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC--------c-----cchHHHH
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN--------I-----NINSKLL  273 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--------~-----~~~~~~~  273 (470)
                      .++-+|.+..+.  .+...            .|..+...|+-..|+..+++.+..+-.+        |     .....+.
T Consensus      1691 nall~A~e~r~~--~i~~E------------~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~ 1756 (2382)
T KOG0890|consen 1691 NALLNAKESRLP--EIVLE------------RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAK 1756 (2382)
T ss_pred             HHHHhhhhcccc--hHHHH------------HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHH
Confidence            999888887643  22222            3889999999999999999999654222        0     0112233


Q ss_pred             HHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214        274 HNRATVLFKMGKY--NEAIADCTLALEKDPNYLKALSRRCKCF  314 (470)
Q Consensus       274 ~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~  314 (470)
                      ...+.-....+++  ..-+..|..+.++.|.....++.+|..|
T Consensus      1757 L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1757 LKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence            3444444455553  3467889999999997777777777444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.34  E-value=0.00034  Score=39.93  Aligned_cols=30  Identities=37%  Similarity=0.455  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy16214         40 YYGNRAACYMMLGMYTYALDDAKLAVSLDP   69 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p   69 (470)
                      +|+.+|.+|..+|++++|+..|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445555555555555555555555555544

...

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=97.33  E-value=0.28  Score=51.25  Aligned_cols=100  Identities=15%  Similarity=0.072  Sum_probs=82.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHc----C---ChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214         10 DGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMML----G---MYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      ..++++..+.|+.|+..|+++-...|..   .++.+..|.+.+..    |   .+.+|+..|++. .-.|.-+--|...|
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  559 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA  559 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence            3567788899999999999999988864   56777888777653    2   477888888764 34677788899999


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCChHHHH
Q psy16214         80 KCNIALGDAPTARSNLKALQELDPDNPAIAQ  110 (470)
Q Consensus        80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  110 (470)
                      .+|..+|++++-+++|.-+++..|++|.+-.
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (932)
T PRK13184        560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISR  590 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence            9999999999999999999999999987543

>PRK10941 hypothetical protein; Provisional

Probab=97.31  E-value=0.0032  Score=55.49  Aligned_cols=82  Identities=13%  Similarity=0.097  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKR  348 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~  348 (470)
                      ....+.++-.++...++++.|+.+.+..+.+.|+++.-+..+|.+|.++|.+..|...++..++..|+......++.-..
T Consensus       180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999766666655444


Q ss_pred             Hh
Q psy16214        349 LL  350 (470)
Q Consensus       349 ~~  350 (470)
                      .+
T Consensus       260 ~l  261 (269)
T PRK10941        260 SI  261 (269)
T ss_pred             HH
Confidence            44

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=97.30  E-value=0.15  Score=47.63  Aligned_cols=105  Identities=12%  Similarity=0.101  Sum_probs=66.4

Q ss_pred             cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC----C---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214        245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG----K---YNEAIADCTLALEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g----~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  317 (470)
                      .|+.++|+..+-..-.+.|+-... ..-|-.+..++....    .   --+-+.+.++.+-.+..+..++..-+.--+.+
T Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (831)
T PRK15180        711 EGRLDEALSVLISLKRIEPDVSRL-MREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHL  789 (831)
T ss_pred             cccHHHHHHHHHhhhccCccHHHH-HHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHH
Confidence            478889998888777778873221 112222233322211    1   12334555566666788888887777778889


Q ss_pred             CCHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHh
Q psy16214        318 GQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLL  350 (470)
Q Consensus       318 g~~~~A~~~~~~a~~~~-p~~~~~~~l~~~~~~~  350 (470)
                      .+|.+|+.++++.-+.+ |...+...+..|...+
T Consensus       790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  823 (831)
T PRK15180        790 RDYTQALQYWQRLEKVNGPTEPVTRQISTCITAL  823 (831)
T ss_pred             HHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHH
Confidence            99999999999999887 4455555555554444

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.29  E-value=0.003  Score=46.41  Aligned_cols=92  Identities=14%  Similarity=0.027  Sum_probs=72.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHcCC-----------hHHHHHHHHHHHhcCCCCHHHH
Q psy16214         10 DGNTQYKLKQYSKALKCYSEAISVCPNVA---AYYGNRAACYMMLGM-----------YTYALDDAKLAVSLDPRFSKGL   75 (470)
Q Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~   75 (470)
                      +|..++..||+.+|+++.+..+..++++.   ..+...|.++..+..           .-.|++.+.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57889999999999999999999888765   556667887765542           3467788888888888888888


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214         76 IRQIKCNIALGDAPTARSNLKALQEL  101 (470)
Q Consensus        76 ~~la~~~~~~g~~~~A~~~~~~~l~~  101 (470)
                      +.+|.-+-....|+++..-.++++.+
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            88887777777777777777777764

>KOG1550|consensus

Probab=97.23  E-value=0.18  Score=50.18  Aligned_cols=265  Identities=12%  Similarity=0.002  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcC
Q psy16214          4 AEKHKEDGNTQYKL-----KQYSKALKCYSEAISV-----CPNVAAYYGNRAACYMMLG-----MYTYALDDAKLAVSLD   68 (470)
Q Consensus         4 a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~   68 (470)
                      +.....+|.+++.-     .|.+.|+.+|..+...     .-.++.+.+.+|.+|..-.     ++..|+..+.++.+..
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g  323 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG  323 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence            34455666666554     6899999999999771     1125668889999999853     6788999999998765


Q ss_pred             CCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214         69 PRFSKGLIRQIKCNIALG---DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM  145 (470)
Q Consensus        69 p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  145 (470)
                        ++.+.+.+|.++..-.   ++..|..+|..+...  .+..+...++.++..      +  .-...+...|..++.++.
T Consensus       324 --~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~------G--~gv~r~~~~A~~~~k~aA  391 (552)
T KOG1550|consen  324 --NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL------G--LGVERNLELAFAYYKKAA  391 (552)
T ss_pred             --CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh------C--CCcCCCHHHHHHHHHHHH
Confidence              5678889999998766   578999999998764  355666666665322      1  112357889999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhhcCCCChH----HHHHHHHHHhcc----CChHHHHHHHHHHHhhC
Q psy16214        146 DQGVASKTYKLMKAECLAHL-NRLQEAQEIANSILATDKQNPD----AVFVRGLCLYYD----DKMDLAVNHFQLLLKLA  216 (470)
Q Consensus       146 ~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~----g~~~~A~~~~~~~l~~~  216 (470)
                      +..  .+.+...++.++..- +.++.+...+.......-..+.    .+..........    .+...+...+.++... 
T Consensus       392 ~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-  468 (552)
T KOG1550|consen  392 EKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQ-  468 (552)
T ss_pred             Hcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhc-
Confidence            887  333344444444332 7777776666655444322221    111111111111    2344555555555433 


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH---cCCHHHH
Q psy16214        217 PDHAKAKETYKRAKLLKAKKEEGNEKFVA----GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK---MGKYNEA  289 (470)
Q Consensus       217 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~---~g~~~~A  289 (470)
                       .+..+...+            |.+|+.-    .+++.|...|..+....       +...+++|.++..   ...+..|
T Consensus       469 -g~~~a~~~l------------gd~y~~g~g~~~d~~~a~~~y~~a~~~~-------~~~~~nlg~~~e~g~g~~~~~~a  528 (552)
T KOG1550|consen  469 -GNADAILKL------------GDYYYYGLGTGRDPEKAAAQYARASEQG-------AQALFNLGYMHEHGEGIKVLHLA  528 (552)
T ss_pred             -cCHHHHhhh------------cceeeecCCCCCChHHHHHHHHHHHHhh-------hHHHhhhhhHHhcCcCcchhHHH
Confidence             233333333            6666554    46899999999987766       3568888888753   1127889


Q ss_pred             HHHHHHHHHhCCCC
Q psy16214        290 IADCTLALEKDPNY  303 (470)
Q Consensus       290 ~~~~~~al~~~p~~  303 (470)
                      ..++.++.+.+...
T Consensus       529 ~~~~~~~~~~~~~~  542 (552)
T KOG1550|consen  529 KRYYDQASEEDSRA  542 (552)
T ss_pred             HHHHHHHHhcCchh
Confidence            99999988876553

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.21  E-value=0.0093  Score=50.86  Aligned_cols=95  Identities=18%  Similarity=0.101  Sum_probs=70.0

Q ss_pred             HhcCCHHHHHHHHHHHHhh---cccCccchHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhC--CC----CHHH
Q psy16214        243 FVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYN-------EAIADCTLALEKD--PN----YLKA  306 (470)
Q Consensus       243 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~--p~----~~~~  306 (470)
                      .....+++|++.|.-|+-.   ....+...+.++..+|++|..+++.+       .|++.|.+++...  |.    ...+
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            3345778888888887732   22223235788999999999999954       5556666665543  22    2678


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214        307 LSRRCKCFHALGQYKECVIDAEKIYKMDNSR  337 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  337 (470)
                      .+.+|.+..++|++++|.++|.+++.....+
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            8999999999999999999999999875543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.18  E-value=0.024  Score=52.73  Aligned_cols=78  Identities=24%  Similarity=0.086  Sum_probs=57.0

Q ss_pred             hhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------------CCC------------C---HHHHHHHHHH
Q psy16214         31 ISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------------DPR------------F---SKGLIRQIKC   81 (470)
Q Consensus        31 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------------~p~------------~---~~~~~~la~~   81 (470)
                      +..+|-+.+++..++.++..+|+...|.+.+++|+-.              ++.            |   ..+.++....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            4567888889999999999999988888888887532              111            1   2355666777


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCC-ChHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPD-NPAI  108 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~-~~~~  108 (470)
                      +.+.|-+..|.+..+-++.++|. ++-.
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence            77788888888888888888887 5543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.15  E-value=0.21  Score=46.34  Aligned_cols=71  Identities=6%  Similarity=0.002  Sum_probs=44.4

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214         26 CYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ   99 (470)
Q Consensus        26 ~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l   99 (470)
                      .+++++..-|-.+..|+.....+...++-+.|+...++++...|.   ....++.+|....+.+....+|+++.
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~  360 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT  360 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence            345555555556666766666666777777777766666655554   45566666666666665555666554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.14  E-value=0.19  Score=45.63  Aligned_cols=174  Identities=17%  Similarity=0.075  Sum_probs=125.4

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHc----CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----
Q psy16214         13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMML----GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA----   84 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----   84 (470)
                      .....+++..|+..+..+-..  ..+.....++.+|..-    .+..+|+..|..+.  ...++.+.+.+|.+|..    
T Consensus        50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv  125 (292)
T COG0790          50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV  125 (292)
T ss_pred             cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence            344667889999999988763  2346777888888753    46888999999544  56678899999999987    


Q ss_pred             cCChHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDN-PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA  163 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  163 (470)
                      ..+..+|..+|.++....-.. ......++..+..-. ..    .-...+...|+..+.++....  ++.....+|.+|.
T Consensus       126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~----~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~  198 (292)
T COG0790         126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA----LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYE  198 (292)
T ss_pred             ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh----hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence            459999999999998865433 233555555543321 00    111113357888888887776  6777888888886


Q ss_pred             H----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC
Q psy16214        164 H----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD  200 (470)
Q Consensus       164 ~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  200 (470)
                      .    ..++.+|...|.++.+...  ....+.++ +++..|
T Consensus       199 ~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         199 KGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             cCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            5    3589999999999998776  88888888 666655

>KOG0568|consensus

Probab=97.12  E-value=0.00066  Score=55.64  Aligned_cols=58  Identities=26%  Similarity=0.563  Sum_probs=48.6

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHh-hcCCh
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG-ILSDP  417 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~-~l~d~  417 (470)
                      ...++|++|||...++.++++.+|-+++.++|||...+      +.....|..|.+||. ||+..
T Consensus        45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~------~adaa~f~qideafrkvlq~~  103 (342)
T KOG0568|consen   45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE------EADAARFIQIDEAFRKVLQEK  103 (342)
T ss_pred             HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc------cccHHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999998765      334567888888886 66553

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.12  E-value=0.00073  Score=38.18  Aligned_cols=31  Identities=23%  Similarity=0.396  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPN   36 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~   36 (470)
                      +++.+|.++...|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.07  E-value=0.014  Score=46.35  Aligned_cols=86  Identities=16%  Similarity=0.047  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..+..........++.+++..++...--+.|+.+..-..-|..++..|++.+|+..++.+....|..+.+--.++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            34577788888888899999999888888899999988889999999999999999999988888888888888889988


Q ss_pred             HcCChH
Q psy16214         84 ALGDAP   89 (470)
Q Consensus        84 ~~g~~~   89 (470)
                      .+|+.+
T Consensus        90 ~~~D~~   95 (160)
T PF09613_consen   90 ALGDPS   95 (160)
T ss_pred             HcCChH
Confidence            888764

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.07  E-value=0.0081  Score=44.18  Aligned_cols=95  Identities=17%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK-----------YNEAIADCTLALEKDPNYLKAL  307 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~  307 (470)
                      +..++..|++-+|+++.+..+...+++... +.++..-|.++..+..           .-.+++.+.++..+.|..+..+
T Consensus         3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~-~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    3 AKDYFARGNHIKALEIIEDLISRHGEDESS-WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHccCCCch-HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            778899999999999999999988876532 2556666777765543           4568999999999999999999


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        308 SRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       308 ~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      +.+|.-+-...-|++++.-.++++.+.
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999988888888888888888888764

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=97.00  E-value=0.011  Score=42.53  Aligned_cols=67  Identities=19%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChH
Q psy16214         23 ALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF--SKGLIRQIKCNIALGDAP   89 (470)
Q Consensus        23 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~   89 (470)
                      .+..+++.+..+|++..+.+.+|..++..|++++|++.+-.++..++++  ..+...+-.++..+|.-+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            4566778888888888888888888888888888888888888887765  445555555555555433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.99  E-value=0.0014  Score=36.95  Aligned_cols=31  Identities=29%  Similarity=0.519  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        306 ALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       306 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +++.+|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666777777777777777777777766664

>PRK10941 hypothetical protein; Provisional

Probab=96.97  E-value=0.011  Score=52.09  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK  230 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  230 (470)
                      .+.++-.++...++++.|+.+.+.++...|+++.-+..+|.+|.++|.+..|...++..++..|+++.+.....++.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            45567788999999999999999999999999999999999999999999999999999999999998876654443

>KOG1914|consensus

Probab=96.97  E-value=0.37  Score=45.92  Aligned_cols=226  Identities=12%  Similarity=0.024  Sum_probs=150.0

Q ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC---CH
Q psy16214         95 LKALQELDPDNPAIAQESKALETMAKN--FEGASKAFEANDYRTAMFYLDRAMDQGV-ASKTYKLMKAECLAHLN---RL  168 (470)
Q Consensus        95 ~~~~l~~~p~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~---~~  168 (470)
                      +++++..-+-.+++|+.........++  .+.+..--.....+++..++++++..-. .+...++.++..-...-   .+
T Consensus       268 yeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~  347 (656)
T KOG1914|consen  268 YEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKE  347 (656)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchh
Confidence            444444455566777766655444333  1122222223334567777777776533 33445555554443333   37


Q ss_pred             HHHHHHHHHHhhcCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214        169 QEAQEIANSILATDKQNPD-AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGK  247 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (470)
                      +.....+++++.....++. +|..+-..-.+..-...|...|.++-+..-....++..-           .-.-|.-.++
T Consensus       348 ~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~-----------A~mEy~cskD  416 (656)
T KOG1914|consen  348 KKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAA-----------ALMEYYCSKD  416 (656)
T ss_pred             hhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHH-----------HHHHHHhcCC
Confidence            7788888888877655544 455555666666778889999999877543332332221           0234667899


Q ss_pred             HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHhCCHHHHH
Q psy16214        248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--DPN-YLKALSRRCKCFHALGQYKECV  324 (470)
Q Consensus       248 ~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-~~~~~~~la~~~~~~g~~~~A~  324 (470)
                      ..-|...|+-.++..++++.+    -......+..+++-..|...|++++..  .|+ ...+|-..-..-..-|+...++
T Consensus       417 ~~~AfrIFeLGLkkf~d~p~y----v~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~  492 (656)
T KOG1914|consen  417 KETAFRIFELGLKKFGDSPEY----VLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL  492 (656)
T ss_pred             hhHHHHHHHHHHHhcCCChHH----HHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence            999999999999999996643    555677788899999999999999987  433 3577877878888899999998


Q ss_pred             HHHHHHHhcCC
Q psy16214        325 IDAEKIYKMDN  335 (470)
Q Consensus       325 ~~~~~a~~~~p  335 (470)
                      +.=++-....|
T Consensus       493 ~lekR~~~af~  503 (656)
T KOG1914|consen  493 KLEKRRFTAFP  503 (656)
T ss_pred             HHHHHHHHhcc
Confidence            88888777776

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.93  E-value=0.0078  Score=38.03  Aligned_cols=39  Identities=28%  Similarity=0.290  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214         74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES  112 (470)
Q Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  112 (470)
                      .++.+|..+.++|+|++|..+.+.++++.|+|..+....
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~   41 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK   41 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            456667777777777777777777777777776655433

>KOG0723|consensus

Probab=96.91  E-value=0.0026  Score=45.43  Aligned_cols=56  Identities=34%  Similarity=0.471  Sum_probs=45.8

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChh
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT  418 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~  418 (470)
                      .+++.-.+|||..+.+.+.|++++|+.....|||+.-++      .   .=.+|+||+++|....
T Consensus        54 sr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSP------Y---lAsKINEAKdlLe~~~  109 (112)
T KOG0723|consen   54 SRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSP------Y---LASKINEAKDLLEGTS  109 (112)
T ss_pred             chHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCH------H---HHHHHHHHHHHHhccc
Confidence            456677899999999999999999999999999998772      1   1235899999986543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.89  E-value=0.0087  Score=37.81  Aligned_cols=35  Identities=31%  Similarity=0.439  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy16214        273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKAL  307 (470)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  307 (470)
                      ++.+|..+.++|+|++|..+++.++++.|++..+.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            45555555555555555555555555555555443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.87  E-value=0.0021  Score=37.15  Aligned_cols=29  Identities=17%  Similarity=0.334  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        306 ALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       306 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      ++..+|.+|..+|++++|+.+|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46788888888888888888888866554

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.86  E-value=0.35  Score=43.96  Aligned_cols=182  Identities=15%  Similarity=0.064  Sum_probs=130.6

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCC
Q psy16214        130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL----NRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDK  201 (470)
Q Consensus       130 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~  201 (470)
                      ..+++..++..+..+-..  ........++.++..-    .+..+|+..|..+.  ...++.+.+.+|.++..    ..+
T Consensus        53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d  128 (292)
T COG0790          53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLD  128 (292)
T ss_pred             ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccC
Confidence            446777777777777652  2235666777777654    46888999999444  46678899999999977    458


Q ss_pred             hHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhhcccCccchHHHH
Q psy16214        202 MDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLKAKKEEGNEKFVA-----G--KNQEAFDIYTEALKIDARNININSKLL  273 (470)
Q Consensus       202 ~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~~  273 (470)
                      ..+|..+|+++....-... .+...+            +..+..-     -  +...|+..|.++-...      ...+.
T Consensus       129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l------------~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~------~~~a~  190 (292)
T COG0790         129 LVKALKYYEKAAKLGNVEAALAMYRL------------GLAYLSGLQALAVAYDDKKALYLYRKAAELG------NPDAQ  190 (292)
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHH------------HHHHHcChhhhcccHHHHhHHHHHHHHHHhc------CHHHH
Confidence            9999999999998754332 223333            4444432     1  2347888888887665      34568


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------------CHHHHHHHHHHHHhcC
Q psy16214        274 HNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG---------------QYKECVIDAEKIYKMD  334 (470)
Q Consensus       274 ~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~a~~~~  334 (470)
                      ..+|.+|..    ..++.+|..+|.++.+...  ..+.+.++ ++...|               +...|..++.++....
T Consensus       191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  267 (292)
T COG0790         191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG  267 (292)
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence            888887754    3489999999999999877  88899999 776665               7778888888887776


Q ss_pred             CC
Q psy16214        335 NS  336 (470)
Q Consensus       335 p~  336 (470)
                      +.
T Consensus       268 ~~  269 (292)
T COG0790         268 FD  269 (292)
T ss_pred             Ch
Confidence            64

>KOG1310|consensus

Probab=96.85  E-value=0.0054  Score=57.39  Aligned_cols=103  Identities=26%  Similarity=0.317  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHH
Q psy16214        230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM---GKYNEAIADCTLALEKDPNYLKA  306 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~  306 (470)
                      ..+...+..|+-.+..+.+..|+..|.+++...|.    ...++.+++.++++.   |+.-.|+..+..+++++|....+
T Consensus       372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~----~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka  447 (758)
T KOG1310|consen  372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD----AIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA  447 (758)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc----hhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence            34445555677777778889999999999999998    456688999888765   46778999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        307 LSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++.+++++..++++.+|+.+...+....|+
T Consensus       448 h~~la~aL~el~r~~eal~~~~alq~~~Pt  477 (758)
T KOG1310|consen  448 HFRLARALNELTRYLEALSCHWALQMSFPT  477 (758)
T ss_pred             HHHHHHHHHHHhhHHHhhhhHHHHhhcCch
Confidence            999999999999999999999988888885

>KOG3824|consensus

Probab=96.82  E-value=0.0042  Score=54.03  Aligned_cols=76  Identities=14%  Similarity=0.010  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         40 YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      .-.+.|.-....|+.++|...|+.|+.+.|.++.++..+|......++.-+|-.+|-+++.++|.+.+++....+.
T Consensus       118 ~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  118 LALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3344455556778888888888888888888888888888888877888888888888888888887776655544

>KOG3824|consensus

Probab=96.81  E-value=0.0077  Score=52.50  Aligned_cols=79  Identities=14%  Similarity=0.141  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                      ........|......|+.++|...++.++.+.|++++++...|......++.-+|-.+|-+++.++|.+.+++.+++..
T Consensus       115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            3444556667778889999999999999999999999999999998888999999999999999999998888777654

>KOG2041|consensus

Probab=96.81  E-value=0.59  Score=45.95  Aligned_cols=228  Identities=10%  Similarity=0.047  Sum_probs=106.4

Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy16214         64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR  143 (470)
Q Consensus        64 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  143 (470)
                      .++-+| ++..|..+|......-.++-|...|-++-.. |. ......++.+....  .+.|...---|++++|...|-.
T Consensus       685 fiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~--~q~aei~~~~g~feeaek~yld  759 (1189)
T KOG2041|consen  685 FIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKE--QQRAEISAFYGEFEEAEKLYLD  759 (1189)
T ss_pred             HHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHH--HHhHhHhhhhcchhHhhhhhhc
Confidence            344455 6788888888887777777777777665331 11 11222333332221  1112211122444444443322


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC--CChHHHHHHHHHHhccCChHHHHHHHHHH---------
Q psy16214        144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK--QNPDAVFVRGLCLYYDDKMDLAVNHFQLL---------  212 (470)
Q Consensus       144 ~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------  212 (470)
                      +-+.        -....++...|+|-...++++..-.-..  ..-+++..+|..+..+..+++|.++|..+         
T Consensus       760 ~drr--------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ec  831 (1189)
T KOG2041|consen  760 ADRR--------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIEC  831 (1189)
T ss_pred             cchh--------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHH
Confidence            2111        0111223333444333333332111100  01224444444444444444444444332         


Q ss_pred             -------------HhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH
Q psy16214        213 -------------LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV  279 (470)
Q Consensus       213 -------------l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~  279 (470)
                                   ...-|++......+            |..+...|.-++|++.|-+.  ..|.     +.     -..
T Consensus       832 ly~le~f~~LE~la~~Lpe~s~llp~~------------a~mf~svGMC~qAV~a~Lr~--s~pk-----aA-----v~t  887 (1189)
T KOG2041|consen  832 LYRLELFGELEVLARTLPEDSELLPVM------------ADMFTSVGMCDQAVEAYLRR--SLPK-----AA-----VHT  887 (1189)
T ss_pred             HHHHHhhhhHHHHHHhcCcccchHHHH------------HHHHHhhchHHHHHHHHHhc--cCcH-----HH-----HHH
Confidence                         33334544444444            67777777777777766542  1122     00     123


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                      +..++++.+|.+..++- + -|.-.......+.-++..++.-+|++..+++
T Consensus       888 Cv~LnQW~~avelaq~~-~-l~qv~tliak~aaqll~~~~~~eaIe~~Rka  936 (1189)
T KOG2041|consen  888 CVELNQWGEAVELAQRF-Q-LPQVQTLIAKQAAQLLADANHMEAIEKDRKA  936 (1189)
T ss_pred             HHHHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence            44556666666655431 1 1333334444555566777788888877776

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.78  E-value=0.02  Score=42.39  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=70.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcC---Cc---------hhHHHHHHHHHHHHcCChHHHHHHHHHHHh-------cCC
Q psy16214          9 EDGNTQYKLKQYSKALKCYSEAISVC---PN---------VAAYYGNRAACYMMLGMYTYALDDAKLAVS-------LDP   69 (470)
Q Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~---p~---------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~p   69 (470)
                      ..|...+..|-|++|...++++.+..   |.         ++.++..++.++..+|+|++++....+++.       ++.
T Consensus        14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~q   93 (144)
T PF12968_consen   14 SDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQ   93 (144)
T ss_dssp             HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccc
Confidence            44666778899999999999998763   21         366788899999999999999888887775       344


Q ss_pred             CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214         70 RF----SKGLIRQIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        70 ~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      +.    +.+.+..|.++..+|+.++|+..|+.+-+
T Consensus        94 deGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   94 DEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             THHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            43    44567789999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG2041|consensus

Probab=96.74  E-value=0.67  Score=45.61  Aligned_cols=167  Identities=10%  Similarity=-0.008  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH----------HHHHHHHHHcCChH
Q psy16214         20 YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGL----------IRQIKCNIALGDAP   89 (470)
Q Consensus        20 ~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~~~~~g~~~   89 (470)
                      .++|+++.    +-+| ++..|..+|......-.++-|...|-++-.. |. .+.-          ...|.+-.--|+++
T Consensus       679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~fe  751 (1189)
T KOG2041|consen  679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFE  751 (1189)
T ss_pred             hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence            44555443    3455 5888988988888777777777777654321 11 1111          23344445567888


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy16214         90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ  169 (470)
Q Consensus        90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~  169 (470)
                      +|.+.|-.+-.   .+.     ...++...+++-....+++.|--+.-          +.....++..+|..+..+..|+
T Consensus       752 eaek~yld~dr---rDL-----Aielr~klgDwfrV~qL~r~g~~d~d----------D~~~e~A~r~ig~~fa~~~~We  813 (1189)
T KOG2041|consen  752 EAEKLYLDADR---RDL-----AIELRKKLGDWFRVYQLIRNGGSDDD----------DEGKEDAFRNIGETFAEMMEWE  813 (1189)
T ss_pred             Hhhhhhhccch---hhh-----hHHHHHhhhhHHHHHHHHHccCCCcc----------hHHHHHHHHHHHHHHHHHHHHH
Confidence            88877754422   111     11222222222222222222100000          0000123333344333333344


Q ss_pred             HHHHHHH----------------------HHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214        170 EAQEIAN----------------------SILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL  211 (470)
Q Consensus       170 ~A~~~~~----------------------~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (470)
                      +|.++|.                      .+...-|++...+-.+|..+...|.-++|++.+-+
T Consensus       814 ~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  814 EAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence            4333332                      22334577777888888888888888888887754

>KOG1463|consensus

Probab=96.68  E-value=0.44  Score=42.64  Aligned_cols=169  Identities=16%  Similarity=0.145  Sum_probs=115.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhc----C--CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC-----CChHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILAT----D--KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA-----PDHAKAKE  224 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~----~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~  224 (470)
                      ..++.+|...++|.+|+.....+++.    +  +.-.+++..-..+|+...+..+|...+..+-...     |....+. 
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~-  210 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQAT-  210 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHH-
Confidence            45788899999999999988877653    2  2235677777888999999999988887665422     2111111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--C--ccchHHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Q psy16214        225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--N--ININSKLLHNRATVLFKMGKYNE--AIADCTLALE  298 (470)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~  298 (470)
                          +-.     .-|..+....+|.-|..+|-+|++-...  +  ....+.-|..++.+  .++..++  ++-.-..+++
T Consensus       211 ----lDL-----qSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKI--Mln~~ddv~~lls~K~~l~  279 (411)
T KOG1463|consen  211 ----LDL-----QSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKI--MLNLPDDVAALLSAKLALK  279 (411)
T ss_pred             ----HHH-----hccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHH--HhcCHHHHHHHHhhHHHHh
Confidence                111     1277777778999999999999864321  1  11112233344444  4555544  5555667777


Q ss_pred             hCCCCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCCC
Q psy16214        299 KDPNYLKALSRRCKCFH--ALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       299 ~~p~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .......+....+.++.  .+.+|+.|+..|+.-+..+|-
T Consensus       280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            77888999999999886  467899999999998888874

>KOG2396|consensus

Probab=96.68  E-value=0.064  Score=50.29  Aligned_cols=95  Identities=20%  Similarity=0.190  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC-hHHHHHHHHHHH
Q psy16214        135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK-MDLAVNHFQLLL  213 (470)
Q Consensus       135 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l  213 (470)
                      ..-+..|..+....+.++..|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            3456678889999999999999988888888889999999999999999999999999988777665 999999999999


Q ss_pred             hhCCChHHHHHHHHHH
Q psy16214        214 KLAPDHAKAKETYKRA  229 (470)
Q Consensus       214 ~~~p~~~~~~~~~~~~  229 (470)
                      +.+|+++..|..+-+.
T Consensus       168 R~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFRM  183 (568)
T ss_pred             hcCCCChHHHHHHHHH
Confidence            9999999988765433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.65  E-value=0.0043  Score=35.81  Aligned_cols=27  Identities=30%  Similarity=0.374  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        273 LHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      +.++|.+|..+|++++|+++|++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566777777777777777777775433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.64  E-value=0.046  Score=43.52  Aligned_cols=94  Identities=17%  Similarity=0.048  Sum_probs=77.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCCh
Q psy16214        123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKM  202 (470)
Q Consensus       123 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  202 (470)
                      +.....+..++.+++...+..+--+.|..+.+...-|.+++..|+|.+|+.+++.+....|..+.+--.++.|+...++.
T Consensus        15 e~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   15 EVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            33444566788999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHHhhCC
Q psy16214        203 DLAVNHFQLLLKLAP  217 (470)
Q Consensus       203 ~~A~~~~~~~l~~~p  217 (470)
                      += ..+-..+++..+
T Consensus        95 ~W-r~~A~evle~~~  108 (160)
T PF09613_consen   95 SW-RRYADEVLESGA  108 (160)
T ss_pred             HH-HHHHHHHHhcCC
Confidence            52 222334454444

>KOG2396|consensus

Probab=96.60  E-value=0.67  Score=43.82  Aligned_cols=92  Identities=14%  Similarity=0.058  Sum_probs=66.1

Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc
Q psy16214         23 ALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD-APTARSNLKALQEL  101 (470)
Q Consensus        23 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~  101 (470)
                      -+..|+.+....+.++..|........+.+.+.+--..|.+++..+|+++..|...|.-.+..+. .+.|...+.+++..
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~  169 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF  169 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence            35567777777777777777777666666667777777777777788777777777766665554 77777777788887


Q ss_pred             CCCChHHHHHHHH
Q psy16214        102 DPDNPAIAQESKA  114 (470)
Q Consensus       102 ~p~~~~~~~~l~~  114 (470)
                      +|+++..|...-+
T Consensus       170 npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  170 NPDSPKLWKEYFR  182 (568)
T ss_pred             CCCChHHHHHHHH
Confidence            8777776654443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.59  E-value=1  Score=45.69  Aligned_cols=80  Identities=9%  Similarity=-0.009  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16214        248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDA  327 (470)
Q Consensus       248 ~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  327 (470)
                      ..+|...+..+.....+     .........+....++++.+..++...-....+.....+.+|+++..+|+.++|...|
T Consensus       295 ~~~a~~w~~~~~~~~~~-----~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~  369 (644)
T PRK11619        295 TDEQAKWRDDVIMRSQS-----TSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEIL  369 (644)
T ss_pred             CHHHHHHHHhcccccCC-----cHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHH
Confidence            45566666654432222     1223333444457778877766666643333345677888888888888888888888


Q ss_pred             HHHHh
Q psy16214        328 EKIYK  332 (470)
Q Consensus       328 ~~a~~  332 (470)
                      +++..
T Consensus       370 ~~~a~  374 (644)
T PRK11619        370 RQLMQ  374 (644)
T ss_pred             HHHhc
Confidence            87744

>KOG1538|consensus

Probab=96.58  E-value=0.18  Score=48.84  Aligned_cols=183  Identities=16%  Similarity=0.104  Sum_probs=95.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHH
Q psy16214         76 IRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ--GVASKT  153 (470)
Q Consensus        76 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~  153 (470)
                      ..+|.++.-.|.+.+|.+.|.+.=.    ...+    ..++.....++.|..++..|..++-....++-.+-  +.+.+.
T Consensus       636 iLlA~~~Ay~gKF~EAAklFk~~G~----enRA----lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk  707 (1081)
T KOG1538|consen  636 LLLADVFAYQGKFHEAAKLFKRSGH----ENRA----LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK  707 (1081)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHcCc----hhhH----HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence            3567777778888888888876321    1112    23444445567777777777666655544433221  222222


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH----------HhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANS----------ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~----------~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                         ..|+.+...|+.++|+.+.-.          .-+++...-+.+...+..+.....+.-|.+.|++.=          
T Consensus       708 ---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g----------  774 (1081)
T KOG1538|consen  708 ---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMG----------  774 (1081)
T ss_pred             ---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhc----------
Confidence               246777888888888765431          111222222333333333333344444444443321          


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA  296 (470)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (470)
                                ........+...++|.+|..+-++--+..|       .+|+-.|.-+.+..++++|.+.|-+|
T Consensus       775 ----------D~ksiVqlHve~~~W~eAFalAe~hPe~~~-------dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  775 ----------DLKSLVQLHVETQRWDEAFALAEKHPEFKD-------DVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             ----------cHHHHhhheeecccchHhHhhhhhCccccc-------cccchHHHHhhhhhhHHHHHHHHHHh
Confidence                      111125666777888888776665433333       34555555555555555555555443

>KOG1789|consensus

Probab=96.58  E-value=0.0034  Score=63.38  Aligned_cols=56  Identities=32%  Similarity=0.491  Sum_probs=45.5

Q ss_pred             ccchhhhccCCCCC----CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChh
Q psy16214        355 VKDYYKILGVTKNA----SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT  418 (470)
Q Consensus       355 ~~~~y~~lg~~~~~----~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~  418 (470)
                      ..+.|++|.++...    ..+.|+++|++++.+|||||++.        -.++|..+++|||.|+...
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE--------GRemFe~VnKAYE~L~~~t 1339 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE--------GREMFERVNKAYELLSSET 1339 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch--------HHHHHHHHHHHHHHHHHHH
Confidence            35788998887633    33689999999999999999975        4678999999999997443

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.53  E-value=0.051  Score=39.04  Aligned_cols=49  Identities=14%  Similarity=0.159  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q psy16214        137 AMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN  185 (470)
Q Consensus       137 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  185 (470)
                      .+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3556778888999999999999999999999999999999999988765

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.53  E-value=0.7  Score=43.11  Aligned_cols=187  Identities=11%  Similarity=-0.044  Sum_probs=111.5

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh----
Q psy16214        140 YLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL----  215 (470)
Q Consensus       140 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~----  215 (470)
                      .+++++...|-.+++|+.....+...++-+.|+......+...|.   ....++.++...++.+.-..+|+++...    
T Consensus       290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~  366 (660)
T COG5107         290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRK  366 (660)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHH
Confidence            344555555666666666666666777777777777776665554   5566677776666665555555555431    


Q ss_pred             ----CC-------ChH---HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHH-HH
Q psy16214        216 ----AP-------DHA---KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT-VL  280 (470)
Q Consensus       216 ----~p-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~-~~  280 (470)
                          +.       +++   .-.......+..-.+...-+.-.+..-.+.|..+|.++-+..-..+    .++..-|. -+
T Consensus       367 ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h----~vyi~~A~~E~  442 (660)
T COG5107         367 YSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH----HVYIYCAFIEY  442 (660)
T ss_pred             HhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc----ceeeeHHHHHH
Confidence                00       001   0000000001111111112233334445666677776654432211    22332232 35


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      ...|++..|...|+-.+...|+.+......-..+...++-+.|...|+++++.
T Consensus       443 ~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r  495 (660)
T COG5107         443 YATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER  495 (660)
T ss_pred             HhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH
Confidence            57899999999999999999999888788888889999999999999988754

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.51  E-value=0.32  Score=39.05  Aligned_cols=144  Identities=13%  Similarity=0.040  Sum_probs=86.4

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q psy16214         44 RAACYMMLGMYTYALDDAKLAVSLDPRF--SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN  121 (470)
Q Consensus        44 ~a~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~  121 (470)
                      -+.-+...+..++|+..|...-+..-..  .-+.++.+.+..+.|+...|+..|..+-...| .|.+...+++       
T Consensus        64 aAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~AR-------  135 (221)
T COG4649          64 AALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLAR-------  135 (221)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHH-------
Confidence            3444455677778887777665544333  34567778888888888888888888765433 3333333333       


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16214        122 FEGASKAFEANDYRTAMFYLDRAM-DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL  196 (470)
Q Consensus       122 ~~~a~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  196 (470)
                      +..|..++..|.|++.....+.+- ..+|-...+...+|..-++.|++..|...|..+.. +...|....+++.+.
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m  210 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM  210 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence            344455666676666655554432 22444455666677777777777777777776655 444455555555443

>KOG0529|consensus

Probab=96.44  E-value=0.74  Score=42.46  Aligned_cols=316  Identities=13%  Similarity=0.080  Sum_probs=183.8

Q ss_pred             HHHhcCCHH-HHHHHHHHHhhcCCchhHHHHHHHHHHHHc------------CChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214         13 TQYKLKQYS-KALKCYSEAISVCPNVAAYYGNRAACYMML------------GMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus        13 ~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~------------g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      .....|.|+ ++++.=.+.+..+|+...+|..+=.++...            .-.++-+.....+++.+|+...+|+.+.
T Consensus        37 ~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~  116 (421)
T KOG0529|consen   37 KKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK  116 (421)
T ss_pred             HHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            334455554 677777888889999888777665554332            2356677888899999999999999999


Q ss_pred             HHHHHcCC--hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16214         80 KCNIALGD--APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLM  157 (470)
Q Consensus        80 ~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  157 (470)
                      .++.+.+.  +..=+...+++++.+|.|-..|.....+......        ......+-+.+.++++..++.+-.+|..
T Consensus       117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~--------~~~~~~~El~ftt~~I~~nfSNYsaWhy  188 (421)
T KOG0529|consen  117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER--------SRNLEKEELEFTTKLINDNFSNYSAWHY  188 (421)
T ss_pred             HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc--------ccccchhHHHHHHHHHhccchhhhHHHH
Confidence            99987764  5788899999999999999988766655333211        1123556678889999999999999888


Q ss_pred             HHHHHHH------cCC------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214        158 KAECLAH------LNR------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET  225 (470)
Q Consensus       158 ~a~~~~~------~~~------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  225 (470)
                      +..++..      .|+      ...-++....++-.+|++..+|+..-..+-..-+.+--+..+...+..+-..+.....
T Consensus       189 Rs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~~~~~~~~~~S~s~~ls~~~~~p~~~~l  268 (421)
T KOG0529|consen  189 RSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGRGMRRECYIVSHSALLSESFSEPLIKYL  268 (421)
T ss_pred             HHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcccccccccccccccccccccCCccHHHH
Confidence            8777652      232      2344566667778899999888764333322111110000111222222222221111


Q ss_pred             HHHHHHHHH----HH-----HHHHHHHhcCCHHHHHHHHHHHHhhcccCccch-----HHHHH-----HHHHHH-HHcCC
Q psy16214        226 YKRAKLLKA----KK-----EEGNEKFVAGKNQEAFDIYTEALKIDARNININ-----SKLLH-----NRATVL-FKMGK  285 (470)
Q Consensus       226 ~~~~~~~~~----~~-----~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~~~~-----~la~~~-~~~g~  285 (470)
                      ...+..+..    ..     .+|.......++..+.+..+--+...+.+....     ...++     .++.+. ....+
T Consensus       269 ~~e~~~v~~~i~~E~~~~~d~~gw~~~~~~n~~s~~~~~~v~~~~e~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~e~~~  348 (421)
T KOG0529|consen  269 RSEIGLVQSTIGSEFETPIDKRGWLCESLVNLESPYETKRVHLTVEDQQFGIVSWVASNEQWLHALLDDLDSLDCNEETR  348 (421)
T ss_pred             HHHhhhhhhhhhhhccccccccCchhccccchhhhhhcccccccccccccccccchhhhhhhHHHHhhhccccchhhhcc
Confidence            111111111    00     012333334455554441111111111111000     01111     011111 11122


Q ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCC
Q psy16214        286 ---YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ---YKECVIDAEKIYKMDNS  336 (470)
Q Consensus       286 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~p~  336 (470)
                         ..+.++.+.++...-|++-...+..+.+....+.   .++-+..+.....++|.
T Consensus       349 ~a~lqe~ie~c~~l~~~~P~~k~~~l~~~~l~~a~e~~~~~~~~l~~~~~le~~d~~  405 (421)
T KOG0529|consen  349 RAWLQEQIESCVELQELLPDSKWGLLTSALLLRALEPMDSEEEILQLYNDLEALDPG  405 (421)
T ss_pred             HHHHHHHHHHHHHHHhhCCccchhHHHHHHHHhccccccchHHHHHHHHHHhccchh
Confidence               4578888999999999998888888888776654   35566666666666664

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.40  E-value=0.065  Score=41.84  Aligned_cols=84  Identities=17%  Similarity=-0.034  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      .+.+.........+.+++...+...--+.|+.+..-..-|..++..|++.+|+..++...+-.+..+-+.-.++.|+..+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            45555666666778888888887777778888888888888888888888888888887777777777777778888777


Q ss_pred             CChH
Q psy16214         86 GDAP   89 (470)
Q Consensus        86 g~~~   89 (470)
                      |+.+
T Consensus        92 ~Dp~   95 (153)
T TIGR02561        92 GDAE   95 (153)
T ss_pred             CChH
Confidence            7753

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2581|consensus

Probab=96.39  E-value=0.42  Score=43.84  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=29.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                      ..|...+.|+.|-....++.--...+....+..++.+|.+..-+.+|..|.+++-+|+...|+
T Consensus       217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq  279 (493)
T KOG2581|consen  217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ  279 (493)
T ss_pred             HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence            344444555555554444331111111113444555555555555555555555555555554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.34  E-value=0.0076  Score=33.31  Aligned_cols=27  Identities=37%  Similarity=0.452  Sum_probs=10.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214         42 GNRAACYMMLGMYTYALDDAKLAVSLD   68 (470)
Q Consensus        42 ~~~a~~~~~~g~~~~A~~~~~~al~~~   68 (470)
                      ..+|.++...+++++|+..++++++++
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~   31 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEKALELD   31 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            333444444444444444444443333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=96.32  E-value=0.07  Score=49.70  Aligned_cols=125  Identities=10%  Similarity=0.051  Sum_probs=90.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHH
Q psy16214        128 AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN  207 (470)
Q Consensus       128 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  207 (470)
                      .+..|+.-.|-..+..++...|..+......+.+...+|+|+.+...+..+-..-.....+...+-.....+|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            34557777777777888888888888888888888888888888887776655544444555555566677888888888


Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214        208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       208 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  264 (470)
                      .-.-.+.-.-+++++...-            +......|-++++...+++.+.++|.
T Consensus       379 ~a~~~l~~eie~~ei~~ia------------a~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVA------------AGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHhccccCChhheeee------------cccHHHHhHHHHHHHHHHHHhccCCh
Confidence            8777776655555554443            55555667788888888888887765

>smart00028 TPR Tetratricopeptide repeats

Probab=96.28  E-value=0.0074  Score=33.34  Aligned_cols=32  Identities=38%  Similarity=0.559  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPN   36 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~   36 (470)
                      ..++.+|..++..+++++|+..|+++++.+|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            57889999999999999999999999998885

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.25  E-value=0.047  Score=49.93  Aligned_cols=95  Identities=18%  Similarity=0.257  Sum_probs=76.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhccc--------Ccc------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDAR--------NIN------INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY  303 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (470)
                      .+...+++++|..|..-|..++++..+        .+.      +.+.+-..+..||+++++.+-|+...-+.|.++|.+
T Consensus       182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~  261 (569)
T PF15015_consen  182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY  261 (569)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence            377777777777777777777765422        111      124556678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        304 LKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      ..-+++.|.|+..+.+|.+|.+.+--+.=
T Consensus       262 frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  262 FRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999887766543

>KOG3192|consensus

Probab=96.17  E-value=0.0083  Score=46.34  Aligned_cols=73  Identities=25%  Similarity=0.416  Sum_probs=56.1

Q ss_pred             ccccchhhhccCCC--CCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        353 SEVKDYYKILGVTK--NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       353 ~~~~~~y~~lg~~~--~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      +...+||.++|...  ...++.++.-|.....++||++-..+...+...+.+.-.++++||..|.||-+|++|=.
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil   79 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL   79 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            44567888886543  44555566578888999999986655555556788888999999999999999999954

>KOG3364|consensus

Probab=96.17  E-value=0.14  Score=39.15  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHHcC---CHHHHHHHHHHHhh-cCCCC-hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214        151 SKTYKLMKAECLAHLN---RLQEAQEIANSILA-TDKQN-PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET  225 (470)
Q Consensus       151 ~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  225 (470)
                      .....+++|.++....   +..+.+.+++.+++ .+|.. -+..+.++..+++.++|+.++.+.+.+++..|++..+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3456778888888765   45678999999996 45543 4688899999999999999999999999999999988766


Q ss_pred             HHHH
Q psy16214        226 YKRA  229 (470)
Q Consensus       226 ~~~~  229 (470)
                      ...+
T Consensus       111 k~~i  114 (149)
T KOG3364|consen  111 KETI  114 (149)
T ss_pred             HHHH
Confidence            5433

>KOG4814|consensus

Probab=96.13  E-value=1.5  Score=42.88  Aligned_cols=95  Identities=14%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCch------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNV------AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIK   80 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   80 (470)
                      +.+.|...|+..+|..+++.|...+...|.+      +.....++.||+.+.+.+.|++.++.|-+.+|.++-.....-.
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            4555667777777777777777777665543      4556667777777777777777777777777777777777777


Q ss_pred             HHHHcCChHHHHHHHHHHHhc
Q psy16214         81 CNIALGDAPTARSNLKALQEL  101 (470)
Q Consensus        81 ~~~~~g~~~~A~~~~~~~l~~  101 (470)
                      +....+.-++|+.+..+....
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            777777777777777666553

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=96.10  E-value=0.1  Score=40.78  Aligned_cols=79  Identities=19%  Similarity=0.158  Sum_probs=69.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChH
Q psy16214        125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD  203 (470)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  203 (470)
                      ....+...+.+++...+..+--+.|+.+.+...-|.++...|+|.+|+..++.+....+..+...-.++.|+..+||.+
T Consensus        17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~   95 (153)
T TIGR02561        17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE   95 (153)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence            3344557888999999999889999999999999999999999999999999999988888888888899999888865

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG1538|consensus

Probab=96.10  E-value=1.2  Score=43.53  Aligned_cols=225  Identities=15%  Similarity=0.056  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------------CchhHHHHHHHHHHHHcCChHHHHHHHHHHH------h
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVC-------------PNVAAYYGNRAACYMMLGMYTYALDDAKLAV------S   66 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al------~   66 (470)
                      .|..+|+..+..=+++-|.+.|.+.-...             .....--..+|..+.-.|++.+|.+.|.+.=      +
T Consensus       587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE  666 (1081)
T KOG1538|consen  587 DWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRSGHENRALE  666 (1081)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence            47778888888888999998888764320             0111223457888888899999988887532      2


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH---
Q psy16214         67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE--LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYL---  141 (470)
Q Consensus        67 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~---  141 (470)
                      +..+  --.+.+++-++..|..++-....++--+  .+-+.|.               ..|..++..|+.++|+...   
T Consensus       667 myTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---------------aAAEmLiSaGe~~KAi~i~~d~  729 (1081)
T KOG1538|consen  667 MYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---------------AAAEMLISAGEHVKAIEICGDH  729 (1081)
T ss_pred             HHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---------------HHHHHhhcccchhhhhhhhhcc
Confidence            1111  1123344444444444433333322111  1111111               1222334445555554422   


Q ss_pred             -------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214        142 -------DRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       142 -------~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                             +-.-+++....+.+...+..+.....+.-|.++|.++-.        .-.+..++...+++++|...-++.-+
T Consensus       730 gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  730 GWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             cHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcc
Confidence                   122233344445555566666666666667666665432        12345567788899999888776655


Q ss_pred             hCCChHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214        215 LAPDHAKAKETYKR-AKLLKAKKEEGNEKFVAGKNQEAFDIYTEA  258 (470)
Q Consensus       215 ~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  258 (470)
                      .-|+-   +..+.+ +...+...+.-.++.+.|+..+|...+++.
T Consensus       802 ~~~dV---y~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL  843 (1081)
T KOG1538|consen  802 FKDDV---YMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL  843 (1081)
T ss_pred             ccccc---cchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence            55543   222211 112222223344555556666666655554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.09  E-value=0.12  Score=42.68  Aligned_cols=104  Identities=13%  Similarity=0.031  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA  229 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  229 (470)
                      ..+..+|..|.+.|+.++|++.|.++.......   .+.++.+..+.+..+++.....++.++-..... ..-|....++
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence            466789999999999999999999987754332   457788888889999999999999888765433 1113333334


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                      ....     |..++..++|.+|...|-.++...
T Consensus       116 k~~~-----gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  116 KVYE-----GLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHH-----HHHHHHhchHHHHHHHHHccCcCC
Confidence            4443     888888999999999998776443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3783|consensus

Probab=96.04  E-value=1.5  Score=42.04  Aligned_cols=71  Identities=18%  Similarity=0.091  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCChhH
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEK---DPN----YLKALSRRCKCFHALGQ-YKECVIDAEKIYKMDNSREN  339 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~~~~  339 (470)
                      ..--+..+|.++..+|+...|..++...++.   ...    .|.+++.+|..+..++. ..++..++.+|-+...+-+.
T Consensus       448 ~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~l  526 (546)
T KOG3783|consen  448 EGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDYEL  526 (546)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccccch
Confidence            3456777899999999999999999988843   112    27899999999999999 99999999999998876443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.99  E-value=0.2  Score=41.42  Aligned_cols=102  Identities=13%  Similarity=-0.020  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN--YL----KA  306 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~  306 (470)
                      ..+.++|..|.+.|+.++|++.|.++...... +.....++.++..+....+++.....+..++-.+-..  +.    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            34455699999999999999999998876543 2224678889999999999999999999998776322  22    23


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        307 LSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      ....|..++..++|..|...|-.+..-..
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence            44457777888999999988877765543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4814|consensus

Probab=95.99  E-value=1.8  Score=42.42  Aligned_cols=101  Identities=16%  Similarity=0.084  Sum_probs=87.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                      .+.+.-.++..+|..+++.|...+..-|.+...  .+....+++.||..+.+.+.|.+++++|-+.+|.++-.-...-.+
T Consensus       358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            344888899999999999999999877765421  367788899999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        314 FHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       314 ~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ....++-++|+.+..+......+
T Consensus       438 ~~~E~~Se~AL~~~~~~~s~~~~  460 (872)
T KOG4814|consen  438 FLAEDKSEEALTCLQKIKSSEDE  460 (872)
T ss_pred             HHHhcchHHHHHHHHHHHhhhcc
Confidence            99999999999999988776543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=95.98  E-value=0.051  Score=49.72  Aligned_cols=91  Identities=19%  Similarity=0.312  Sum_probs=73.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCC--------c-----h-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCP--------N-----V-----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDP   69 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~-----~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p   69 (470)
                      ...|...+++++|..|+--|..++++..        .     +     ..+-..+..||+.+++.+-|+....+.|.++|
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP  259 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP  259 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence            3445667777777777777777776531        1     1     23456789999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214         70 RFSKGLIRQIKCNIALGDAPTARSNLKAL   98 (470)
Q Consensus        70 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~   98 (470)
                      .+..-+++.|.|...+.+|.+|...+.-+
T Consensus       260 ~~frnHLrqAavfR~LeRy~eAarSamia  288 (569)
T PF15015_consen  260 SYFRNHLRQAAVFRRLERYSEAARSAMIA  288 (569)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998776554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.91  E-value=0.7  Score=37.21  Aligned_cols=142  Identities=13%  Similarity=0.050  Sum_probs=70.4

Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCCCh--HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQNP--DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      +.+.+..++|+..|..+-+..-.+.  -+.+..+.+....|+...|+..|..+-...|-. .....+.+++       .+
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P-~~~rd~ARlr-------aa  139 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP-QIGRDLARLR-------AA  139 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc-chhhHHHHHH-------HH
Confidence            3445555666666655554433332  234455566666666666666666655433321 1111111111       15


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH  315 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  315 (470)
                      ..+...|-|+......+..- . +.+ .+...+...||.+-++.|++.+|..+|.+... +.+.+....+++.+.+
T Consensus       140 ~lLvD~gsy~dV~srvepLa-~-d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         140 YLLVDNGSYDDVSSRVEPLA-G-DGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             HHHhccccHHHHHHHhhhcc-C-CCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            55566666665544443321 1 111 11344455566666666666666666666554 4444555555555443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.82  Score=44.16  Aligned_cols=122  Identities=20%  Similarity=0.064  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH-HH
Q psy16214        137 AMFYLDRAMDQGVASKTYKLMK--AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL-LL  213 (470)
Q Consensus       137 A~~~~~~~l~~~p~~~~~~~~~--a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-~l  213 (470)
                      ++..+...+.++|.++.++...  ...+...+....+......++..+|.+..+..+++.+....|....+...+.. +.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3344444444444444443222  33333444444555555555555555555555555554444444333333332 44


Q ss_pred             hhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214        214 KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       214 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  264 (470)
                      ...|++.......      ......+......++..++.....++....|.
T Consensus       130 ~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~  174 (620)
T COG3914         130 WLSPDNAEFLGHL------IRFYQLGRYLKLLGRTAEAELALERAVDLLPK  174 (620)
T ss_pred             hcCcchHHHHhhH------HHHHHHHHHHHHhccHHHHHHHHHHHHHhhhh
Confidence            4444444333221      11111344444444555555555555555554

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.89  E-value=0.13  Score=35.20  Aligned_cols=65  Identities=22%  Similarity=0.262  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      ...+.|.-++...+.++|+..++++++..++.+. .-.++-.+..+|...|+|.+.+.+.-.-+.+
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~-rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDRED-RFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445688888899999999999999988777543 4567777888899999999988876655543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG3364|consensus

Probab=95.88  E-value=0.33  Score=37.16  Aligned_cols=79  Identities=13%  Similarity=0.000  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHHHcCC---hHHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214         37 VAAYYGNRAACYMMLGM---YTYALDDAKLAVS-LDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE  111 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  111 (470)
                      .....+++|.++....+   ..+-+..++..++ ..|.. -+..+.+|..+.++++|+.++.+.+.+++..|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            46678889999988765   5677888898886 45543 5678889999999999999999999999999999987654


Q ss_pred             HHHH
Q psy16214        112 SKAL  115 (470)
Q Consensus       112 l~~~  115 (470)
                      -..+
T Consensus       111 k~~i  114 (149)
T KOG3364|consen  111 KETI  114 (149)
T ss_pred             HHHH
Confidence            4433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.77  E-value=0.11  Score=35.52  Aligned_cols=65  Identities=20%  Similarity=0.234  Sum_probs=50.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhH---HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAA---YYGNRAACYMMLGMYTYALDDAKLAVSL   67 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~a~~~~~~g~~~~A~~~~~~al~~   67 (470)
                      .+....+.|..++...+.++|+..++++++..++.+.   ++-.+..+|...|+|.+++.+...-+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999998777654   4455567788889999988877655543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.71  E-value=0.024  Score=47.45  Aligned_cols=56  Identities=18%  Similarity=0.239  Sum_probs=34.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .+.++.+.|.+.|.+++.+.|.....|+++|....+.|+++.|.+.|++.++++|.
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~   61 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE   61 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence            34555566666666666666666666666666666666666666666666666664

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.70  E-value=3.4  Score=43.55  Aligned_cols=138  Identities=20%  Similarity=0.111  Sum_probs=83.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214         79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK  158 (470)
Q Consensus        79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  158 (470)
                      -.++.....|+.|+..|+++-...|...+.+...-++-  ....++|...-....+.+|+..|+++-. .|..+--+...
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  558 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLG--ITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGK  558 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhh--HHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhH
Confidence            34556666777788888877777776654432221110  0012222222222357778888776543 45666667889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC-----ChHHHHHHHHHHHhhCCCh
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD-----KMDLAVNHFQLLLKLAPDH  219 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~  219 (470)
                      |.+|..+|++++-++++.-+++..|++|.+-...-.+.+++.     +...|....--++...|..
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK  624 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999999999875444433333221     2233444444444455543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.68  E-value=0.93  Score=43.80  Aligned_cols=144  Identities=13%  Similarity=-0.005  Sum_probs=108.0

Q ss_pred             hcCCHH-HHHHHHHHHhhcCCchhHHHHH--HHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         16 KLKQYS-KALKCYSEAISVCPNVAAYYGN--RAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        16 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~--~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      ..+... -++..+...+..+|.++..+..  ++..+...+....+...+..++..+|.+..+..+++.+....|....+.
T Consensus        42 ~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~  121 (620)
T COG3914          42 NAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL  121 (620)
T ss_pred             cccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence            334444 3777777778888888776444  4777778889989999999999999999999999999988888877777


Q ss_pred             HHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214         93 SNLKA-LQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL  165 (470)
Q Consensus        93 ~~~~~-~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  165 (470)
                      ..+.. +....|++......+...+. .+++     .-..++..++...+.++....|..+.+...+.....+.
T Consensus       122 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~-----~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~  189 (620)
T COG3914         122 ADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY-----LKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ  189 (620)
T ss_pred             HHHHHHHHhcCcchHHHHhhHHHHHH-HHHH-----HHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence            76665 88889999888777766654 3333     33347778888888888888888877666555553333

>KOG1258|consensus

Probab=95.64  E-value=2.4  Score=41.29  Aligned_cols=61  Identities=11%  Similarity=-0.040  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        55 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      +.+...|...+...|...-.|...|..-.++|..+.+.++|++++.--|.....|..+-..
T Consensus        62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f  122 (577)
T KOG1258|consen   62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF  122 (577)
T ss_pred             HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            5556667777778898888899999999999999999999999999888777776554443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.63  E-value=0.022  Score=47.66  Aligned_cols=58  Identities=22%  Similarity=0.281  Sum_probs=34.7

Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214         49 MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP  106 (470)
Q Consensus        49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  106 (470)
                      ...++.+.|.+.+.+++.+-|.+...|+++|....+.|+++.|...|.+.++++|.+.
T Consensus         6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3445555666666666666666666666666666666666666666666666665543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.11  Score=45.13  Aligned_cols=83  Identities=17%  Similarity=0.178  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKR  348 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~  348 (470)
                      ......++=.++...++++.|..+.++.+.++|.++.-+.-+|.+|.++|-+.-|+..++..++..|+......++....
T Consensus       180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            45667777888899999999999999999999999999999999999999999999999999999999777777766655


Q ss_pred             Hhh
Q psy16214        349 LLK  351 (470)
Q Consensus       349 ~~~  351 (470)
                      .++
T Consensus       260 ~l~  262 (269)
T COG2912         260 ELR  262 (269)
T ss_pred             HHH
Confidence            554

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=1.6  Score=38.18  Aligned_cols=282  Identities=15%  Similarity=0.112  Sum_probs=158.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCC--------chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCP--------NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI   79 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la   79 (470)
                      .++|+...+.+++++|+..|.+.+....        ....+...++..|...|++..--+.....       .++|...+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~s-------re~m~~ft   79 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSS-------REAMEDFT   79 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhh-------HHHHHHhc
Confidence            6788899999999999999999987621        12456778888888888876544433222       22222111


Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214         80 KCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA  159 (470)
Q Consensus        80 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  159 (470)
                      .        .+..+..+..++..|..++.......+....  .+.|..        +-...++.         ..-..++
T Consensus        80 k--------~k~~KiirtLiekf~~~~dsl~dqi~v~~~~--iewA~r--------Ekr~fLr~---------~Le~Kli  132 (421)
T COG5159          80 K--------PKITKIIRTLIEKFPYSSDSLEDQIKVLTAL--IEWADR--------EKRKFLRL---------ELECKLI  132 (421)
T ss_pred             c--------hhHHHHHHHHHHhcCCCCccHHHHHHHHHHH--HHHHHH--------HHHHHHHH---------HHHHHHH
Confidence            1        1122334444444444333222111111110  110100        00011111         2234577


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhc------CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh-----CCChHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILAT------DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL-----APDHAKAKETYKR  228 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~~~~  228 (470)
                      .+++..|.|.+|+.....++..      .|+-..++..-..+|....+..++...+..+-..     .|....+..    
T Consensus       133 ~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l----  208 (421)
T COG5159         133 YLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL----  208 (421)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH----
Confidence            7889999999999888776542      2444667778888888888888887777655432     232222111    


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc---Cc-cchHHHHHHHHHHHHHcCCHHHHHHH--HHHHHH-hCC
Q psy16214        229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR---NI-NINSKLLHNRATVLFKMGKYNEAIAD--CTLALE-KDP  301 (470)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~-~~~~~~~~~la~~~~~~g~~~~A~~~--~~~al~-~~p  301 (470)
                       ..+     -|..+....+|.-|..+|-++++-...   +. ...+.-|..+..+..  +..++-...  -...++ .+.
T Consensus       209 -DL~-----sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~~y~~  280 (421)
T COG5159         209 -DLL-----SGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIML--NRREEVKAVLRNKNTLKHYDD  280 (421)
T ss_pred             -HHh-----ccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH--hhHHHHHHHHccchhHhhhhh
Confidence             111     167777888999999999998864322   11 111222333444433  333333222  223333 345


Q ss_pred             CCHHHHHHHHHHHH--HhCCHHHHHHHHHHHHhcCC
Q psy16214        302 NYLKALSRRCKCFH--ALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       302 ~~~~~~~~la~~~~--~~g~~~~A~~~~~~a~~~~p  335 (470)
                      ....++...+.++.  .+.+|..|+..|+.-+--+|
T Consensus       281 r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~  316 (421)
T COG5159         281 RMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS  316 (421)
T ss_pred             hhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence            55777777787775  46788889888888776665

>KOG2422|consensus

Probab=95.33  E-value=1.5  Score=42.26  Aligned_cols=141  Identities=16%  Similarity=0.069  Sum_probs=84.2

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh-----cCC----------------CChH---HHHHHHHHHhccC
Q psy16214        145 MDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA-----TDK----------------QNPD---AVFVRGLCLYYDD  200 (470)
Q Consensus       145 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p----------------~~~~---~~~~la~~~~~~g  200 (470)
                      +...|-....++.++.+...+|+.+-|..+.++++=     ..|                .+-.   +++..-..+...|
T Consensus       277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG  356 (665)
T KOG2422|consen  277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG  356 (665)
T ss_pred             eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            344678888888889999999998888877777652     111                1111   2223334445678


Q ss_pred             ChHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHH-----HhhcccCccchHHHH
Q psy16214        201 KMDLAVNHFQLLLKLAPD-HAKAKETYKRAKLLKAKKEEGNE-KFVAGKNQEAFDIYTEA-----LKIDARNININSKLL  273 (470)
Q Consensus       201 ~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~~~  273 (470)
                      -+..|.+.++-++.++|. ++.+...+            ..+ .++..+|+=-+..++..     +..-|+-.     .-
T Consensus       357 C~rTA~E~cKlllsLdp~eDPl~~l~~------------ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-----yS  419 (665)
T KOG2422|consen  357 CWRTALEWCKLLLSLDPSEDPLGILYL------------IDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-----YS  419 (665)
T ss_pred             ChHHHHHHHHHHhhcCCcCCchhHHHH------------HHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-----HH
Confidence            888888888888888887 66554443            222 23334444444444433     23334421     12


Q ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q psy16214        274 HNRATVLFKMGK---YNEAIADCTLALEKDPN  302 (470)
Q Consensus       274 ~~la~~~~~~g~---~~~A~~~~~~al~~~p~  302 (470)
                      ..+|..|.....   -..|+..+.+|+.+.|.
T Consensus       420 ~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  420 LALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             HHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence            334555555554   45677888888887774

>KOG2422|consensus

Probab=95.32  E-value=2  Score=41.51  Aligned_cols=100  Identities=21%  Similarity=0.129  Sum_probs=73.9

Q ss_pred             cCCHHHHHHHHHHHhhc------------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----------------
Q psy16214         17 LKQYSKALKCYSEAISV------------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----------------   67 (470)
Q Consensus        17 ~g~~~~A~~~~~~al~~------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------------   67 (470)
                      ...|++|...|.-++..            .|-+...+..++.+...+|+.+-|....+++|=.                 
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            45678888888877654            3455888999999999999998888877776531                 


Q ss_pred             ----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Q psy16214         68 ----DPRF---SKGLIRQIKCNIALGDAPTARSNLKALQELDPD-NPAIAQESKALE  116 (470)
Q Consensus        68 ----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~  116 (470)
                          .|.+   ..+++..-..+.+.|-+..|.++.+-+++++|. +|-....+..++
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~  387 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY  387 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence                2222   224455556677889999999999999999998 777655555543

>KOG0546|consensus

Probab=95.24  E-value=0.034  Score=49.71  Aligned_cols=114  Identities=24%  Similarity=0.259  Sum_probs=90.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcc---c------------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDA---R------------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP  301 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p---~------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (470)
                      +.+...++.+++..|..-|.+++..-.   .            -.........+++.+-.+.+.+..|+.....++..++
T Consensus       227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~  306 (372)
T KOG0546|consen  227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER  306 (372)
T ss_pred             ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence            347788899999999998888874321   1            0111234566788999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214        302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL  350 (470)
Q Consensus       302 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~  350 (470)
                      ....+++.++..+..+.++++|.+.++.+....|+ ..+.+.+.......
T Consensus       307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             hhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999998 55555554444433

>KOG4151|consensus

Probab=95.16  E-value=0.15  Score=50.77  Aligned_cols=113  Identities=34%  Similarity=0.499  Sum_probs=94.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK--MGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                      ..+++.+++.+++..|.--|..++.+.|.+....+....+.+.++..  ++++..++..+.-++...|....++..++.+
T Consensus        57 ~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~  136 (748)
T KOG4151|consen   57 KEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARK  136 (748)
T ss_pred             HhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhH
Confidence            44589999999999999999999999997665567777788877765  4689999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCh-hHHHHHHHHHH
Q psy16214        314 FHALGQYKECVIDAEKIYKMDNSR-ENHNFLEEAKR  348 (470)
Q Consensus       314 ~~~~g~~~~A~~~~~~a~~~~p~~-~~~~~l~~~~~  348 (470)
                      |..++.++-|++...-...+.|+. ++.+.+.+.+.
T Consensus       137 y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~  172 (748)
T KOG4151|consen  137 YEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG  172 (748)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            999999999999999999999983 44444433333

>KOG0431|consensus

Probab=95.12  E-value=0.066  Score=51.10  Aligned_cols=75  Identities=27%  Similarity=0.395  Sum_probs=54.5

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCc--cHHhhHHHHHHHHHHHHHHhhc
Q psy16214        337 RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA--TQAQKLEQEKLFKEVGEAYGIL  414 (470)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~--~~~~~~~~~~~~~~i~~ay~~l  414 (470)
                      ..++.+|.-.+..|-...   =++-..+..-.++..+||+|||++|..||||....  +...|-.+++.|-.+.+|+...
T Consensus       372 ~NIRALLSTLh~VLW~es---~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f  448 (453)
T KOG0431|consen  372 GNIRALLSTLHYVLWPES---GWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKF  448 (453)
T ss_pred             ccHHHHHHHHhHhhcCcc---CcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhh
Confidence            455666655555443311   13445556667889999999999999999998874  4567777899999999998754

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.10  E-value=1.1  Score=38.43  Aligned_cols=74  Identities=16%  Similarity=0.116  Sum_probs=51.5

Q ss_pred             HHHHHhcCCH-------HHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHH
Q psy16214        239 GNEKFVAGKN-------QEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL-KALS  308 (470)
Q Consensus       239 ~~~~~~~~~~-------~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~  308 (470)
                      +.+|...++.       ..|++.|.+++.....  .......+.+.+|.+..+.|++++|+.++.+++.....+. ..+.
T Consensus       125 AWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~  204 (214)
T PF09986_consen  125 AWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLK  204 (214)
T ss_pred             HHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHH
Confidence            7777777774       4566666666654332  2222467889999999999999999999999998643332 3555


Q ss_pred             HHHH
Q psy16214        309 RRCK  312 (470)
Q Consensus       309 ~la~  312 (470)
                      .+|+
T Consensus       205 ~~AR  208 (214)
T PF09986_consen  205 DMAR  208 (214)
T ss_pred             HHHH
Confidence            4444

>KOG0546|consensus

Probab=95.03  E-value=0.058  Score=48.34  Aligned_cols=112  Identities=24%  Similarity=0.219  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-----------c--------hhHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCP-----------N--------VAAYYGNRAACYMMLGMYTYALDDAKLAV   65 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-----------~--------~~~~~~~~a~~~~~~g~~~~A~~~~~~al   65 (470)
                      +.....|+..++.++|..|..-|.+++..-.           +        -.....+++.+-+..+.+..|+.....++
T Consensus       223 ~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~  302 (372)
T KOG0546|consen  223 EKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEAL  302 (372)
T ss_pred             hhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecccccc
Confidence            3455677889999999999999998875311           1        13455678889999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         66 SLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        66 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      ..++....+++.++..+..+.++++|++.+..+....|++..+...+....
T Consensus       303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~  353 (372)
T KOG0546|consen  303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVR  353 (372)
T ss_pred             ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999988766555543

>KOG1464|consensus

Probab=94.96  E-value=2.2  Score=37.04  Aligned_cols=224  Identities=11%  Similarity=0.062  Sum_probs=123.1

Q ss_pred             cCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         17 LKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        17 ~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      ..+.++|+..|++++++.|..    ..++-.+..+++++++|++-+..|.+.+..        ..-|   ...+-.++.+
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY--------IkSA---VTrNySEKsI  108 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY--------IKSA---VTRNYSEKSI  108 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--------HHHH---HhccccHHHH
Confidence            457899999999999998874    457778888999999999999988887642        1100   1111112222


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCH
Q psy16214         93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT----YKLMKAECLAHLNRL  168 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~~~~  168 (470)
                      ...-..+.... +...   +..                  -|+..+..+..+     .+..    ....+|.+++..++|
T Consensus       109 N~IlDyiStS~-~m~L---LQ~------------------FYeTTL~ALkdA-----KNeRLWFKTNtKLgkl~fd~~e~  161 (440)
T KOG1464|consen  109 NSILDYISTSK-NMDL---LQE------------------FYETTLDALKDA-----KNERLWFKTNTKLGKLYFDRGEY  161 (440)
T ss_pred             HHHHHHHhhhh-hhHH---HHH------------------HHHHHHHHHHhh-----hcceeeeeccchHhhhheeHHHH
Confidence            22222221110 0000   000                  011111111111     1111    123477777777777


Q ss_pred             HHHHHHHHHHhhcCCC------------ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Q psy16214        169 QEAQEIANSILATDKQ------------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKK  236 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  236 (470)
                      .+-.++++++-.....            -.+++..-...|..+.+-.+-...|++++.+...-+... .++.+....   
T Consensus       162 ~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECG---  237 (440)
T KOG1464|consen  162 TKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECG---  237 (440)
T ss_pred             HHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcC---
Confidence            7666666554332211            123455555667777777777778888887654332221 222222222   


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcccCcc---chHHHHHHHHHHHHHcC
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDARNIN---INSKLLHNRATVLFKMG  284 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~la~~~~~~g  284 (470)
                        |..+++.|+|++|-.-|-+|++.......   ....-|..+|..+.+.|
T Consensus       238 --GKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~  286 (440)
T KOG1464|consen  238 --GKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSG  286 (440)
T ss_pred             --CccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence              77888999999999888888865332211   11233455666666655

>KOG1839|consensus

Probab=94.87  E-value=0.33  Score=51.27  Aligned_cols=166  Identities=12%  Similarity=0.074  Sum_probs=117.2

Q ss_pred             HHHHHHHHHcCCHHHHHH------HHHH-HhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC--------CChH
Q psy16214        156 LMKAECLAHLNRLQEAQE------IANS-ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA--------PDHA  220 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~------~~~~-~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~  220 (470)
                      ...+......+.+.+|.+      .+.. .-.+.|.....+..++.++...++.++|+..-.++.-+.        |+..
T Consensus       936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence            445566666777887777      4442 334578888999999999999999999999877764322        2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214        221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTL  295 (470)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (470)
                      ..+..            .+...+..++...|+..+.++..+     .|..|. .+.+..+++.++...++++.|+.+.+.
T Consensus      1016 ~~y~n------------lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~-~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1016 LAYGN------------LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPP-TALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred             HHhhH------------HHHHHHhccCccchhhhHHHHHHhhccccCCCCCc-hhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence            22323            367777778888898888888744     344443 466678899999999999999999999


Q ss_pred             HHHhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        296 ALEKDPN--------YLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       296 al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      |+..+..        ....+..+++.+..++++..|+...+....+.
T Consensus      1083 A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy 1129 (1236)
T KOG1839|consen 1083 ALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIY 1129 (1236)
T ss_pred             HHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHH
Confidence            9986322        24455666777777777777766666665544

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.85  E-value=0.08  Score=46.49  Aligned_cols=90  Identities=14%  Similarity=0.065  Sum_probs=77.5

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHH-HHHHHhccCChHHHHHHHHHHHhhCCC
Q psy16214        140 YLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFV-RGLCLYYDDKMDLAVNHFQLLLKLAPD  218 (470)
Q Consensus       140 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~  218 (470)
                      .+.++-...|+++..|...+......+-+.+--..|.++++.+|.+++.|.. -+.-+...++++.+...+.++++++|+
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            3445556678999999999988888999999999999999999999999987 556677889999999999999999999


Q ss_pred             hHHHHHHHHHH
Q psy16214        219 HAKAKETYKRA  229 (470)
Q Consensus       219 ~~~~~~~~~~~  229 (470)
                      ++..|..+-+.
T Consensus       175 ~p~iw~eyfr~  185 (435)
T COG5191         175 SPRIWIEYFRM  185 (435)
T ss_pred             CchHHHHHHHH
Confidence            99998766443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.85  E-value=0.079  Score=31.48  Aligned_cols=29  Identities=34%  Similarity=0.351  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        271 KLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      .++.++|.+|..+|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34566666666666666666666666654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.82  E-value=0.35  Score=35.19  Aligned_cols=59  Identities=22%  Similarity=0.241  Sum_probs=40.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcccCcc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        241 EKFVAGKNQEAFDIYTEALKIDARNIN-----INSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       241 ~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      .....+++.+|++.+.+.+........     ....+..++|.++...|++++|+..+++++++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            345678888888888887765443222     12455667777777777777777777777766

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.78  E-value=0.21  Score=36.30  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=52.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy16214        280 LFKMGKYNEAIADCTLALEKDPN---------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA  346 (470)
Q Consensus       280 ~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~  346 (470)
                      ..+.|+|.+|++.+.+.......         ...++.++|.++...|++++|+..+++++++.....-...|..+
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~a   83 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYA   83 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            45789999999988888776322         24678889999999999999999999999987654434444443

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=94.73  E-value=0.079  Score=46.55  Aligned_cols=89  Identities=12%  Similarity=0.012  Sum_probs=76.7

Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCChHHHHHHHHHHHhcCCCC
Q psy16214         27 YSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR-QIKCNIALGDAPTARSNLKALQELDPDN  105 (470)
Q Consensus        27 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~p~~  105 (470)
                      |.++-...|+++..|...+..-...+-|.+--..|.+++..+|.+++.|.. .+.-+...++++.+...+.+++..+|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334445567889999998888888999999999999999999999999987 6667888899999999999999999999


Q ss_pred             hHHHHHHHHH
Q psy16214        106 PAIAQESKAL  115 (470)
Q Consensus       106 ~~~~~~l~~~  115 (470)
                      |.+|...-.+
T Consensus       176 p~iw~eyfr~  185 (435)
T COG5191         176 PRIWIEYFRM  185 (435)
T ss_pred             chHHHHHHHH
Confidence            9998766554

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.59  E-value=0.083  Score=31.36  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       304 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      ..++.++|.+|...|++++|..++++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999999864

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=94.57  E-value=3.1  Score=36.89  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=45.3

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q psy16214        104 DNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFY----LDRAMDQGVASKTYKLMKAEC-LAHLNRLQEAQEIANSI  178 (470)
Q Consensus       104 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~----~~~~l~~~p~~~~~~~~~a~~-~~~~~~~~~A~~~~~~~  178 (470)
                      .++..+..++..+...+.+..|..++-.+....+...    ........|.....+..++.+ |...++...|...+...
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f  167 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF  167 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3456666666666666666666666666655555443    122234466777777666654 56679999998877666


Q ss_pred             hhc
Q psy16214        179 LAT  181 (470)
Q Consensus       179 l~~  181 (470)
                      ++.
T Consensus       168 ~~~  170 (260)
T PF04190_consen  168 TSK  170 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

; PDB: 3LKU_E 2WPV_G.

>KOG1839|consensus

Probab=94.56  E-value=0.42  Score=50.55  Aligned_cols=173  Identities=16%  Similarity=0.107  Sum_probs=108.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHH------HHHHHh-hcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALK------CYSEAI-SVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------   67 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~------~~~~al-~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------   67 (470)
                      .+....+.|......+.+.+|.+      ++.... ...|.....+..++..+..++++++|+....++.-+        
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence            34556777888888888887777      444222 346777888888899999999999988887776554        


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                      .|+....+..++......++...|...+.++..+.--                         .             .-..
T Consensus      1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~L-------------------------s-------------~ge~ 1052 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLL-------------------------S-------------SGED 1052 (1236)
T ss_pred             CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhcc-------------------------c-------------cCCC
Confidence            2344566777777777777777777766666542100                         0             0012


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--------ChHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy16214        148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ--------NPDAVFVRGLCLYYDDKMDLAVNHFQLLL  213 (470)
Q Consensus       148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~l  213 (470)
                      .|.......++..++...++++.|+.+++.++.....        ....+..++.+....+++..|+...+...
T Consensus      1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred             CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence            3444445555666666777778888888777764321        23345555566655666655555544433

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.55  E-value=3  Score=36.62  Aligned_cols=209  Identities=13%  Similarity=0.025  Sum_probs=124.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHH---HHhhcC--CCChHH
Q psy16214        122 FEGASKAFEANDYRTAMFYLDRAMDQGVA--------SKTYKLMKAECLAHLNRLQEAQEIAN---SILATD--KQNPDA  188 (470)
Q Consensus       122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~---~~l~~~--p~~~~~  188 (470)
                      .+.|......+++++|+..+.+++.....        .......++.+|...|++..--+...   .+....  |....+
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki   86 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI   86 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence            56677788889999999999998876221        22456778899999988765433332   222211  111111


Q ss_pred             HHHHHH-HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc--cC
Q psy16214        189 VFVRGL-CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA--RN  265 (470)
Q Consensus       189 ~~~la~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~  265 (470)
                      ...+-. .-.....++.-+..+..+++.........      ....-.......+++.|+|.+|+....-.+..-.  ++
T Consensus        87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~f------Lr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD  160 (421)
T COG5159          87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKF------LRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD  160 (421)
T ss_pred             HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC
Confidence            111111 11233445555666655555322111111      1112223347889999999999998887663211  11


Q ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEK-----DPNYLKAL--SRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ......++..-..+|....+..++...+..|-..     .|....+-  ..-|..+..-.+|.-|..+|-.+++-...
T Consensus       161 K~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~  238 (421)
T COG5159         161 KINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL  238 (421)
T ss_pred             ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcccc
Confidence            1113456777788999998888887777766543     34333332  23356667778999999999999886654

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.35  Score=42.21  Aligned_cols=71  Identities=17%  Similarity=0.179  Sum_probs=64.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      .++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+.+.+-...
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            34556678889999999999999999999999999999999999999999999999999999998876654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.46  E-value=5  Score=38.71  Aligned_cols=156  Identities=17%  Similarity=0.150  Sum_probs=87.9

Q ss_pred             HHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHH
Q psy16214        128 AFEANDYRTAMFYLD--RAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA  205 (470)
Q Consensus       128 ~~~~~~~~~A~~~~~--~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  205 (470)
                      .+-+++++++.....  +.+..-|  .......+..+.+.|-++.|+...        .+++..+.++   ...|+.+.|
T Consensus       271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~A  337 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDIA  337 (443)
T ss_dssp             HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHHH
T ss_pred             HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHHH
Confidence            344577777666654  2222222  344556777778888888887764        3455555554   577888888


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC
Q psy16214        206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK  285 (470)
Q Consensus       206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~  285 (470)
                      .+..+     ..+++..|..+            |...+..|+++-|.++|.++-    +        +..+..+|.-.|+
T Consensus       338 ~~~a~-----~~~~~~~W~~L------------g~~AL~~g~~~lAe~c~~k~~----d--------~~~L~lLy~~~g~  388 (443)
T PF04053_consen  338 LEIAK-----ELDDPEKWKQL------------GDEALRQGNIELAEECYQKAK----D--------FSGLLLLYSSTGD  388 (443)
T ss_dssp             HHHCC-----CCSTHHHHHHH------------HHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-
T ss_pred             HHHHH-----hcCcHHHHHHH------------HHHHHHcCCHHHHHHHHHhhc----C--------ccccHHHHHHhCC
Confidence            76653     23456677777            999999999999988888742    2        5556667777777


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                      .+.-.+....+......     ...-.+++.+|+.++.++.+.+.
T Consensus       389 ~~~L~kl~~~a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  389 REKLSKLAKIAEERGDI-----NIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHHHHHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence            65555555554443221     12233455556666666555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.45  E-value=0.53  Score=41.64  Aligned_cols=65  Identities=20%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      ...++..++..+...|+++.++..+++.+..+|-+-.+|..+-.+|...|+...|+..|++..+.
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            34678888999999999999999999999999999999999999999999999999999988763

>KOG0529|consensus

Probab=94.30  E-value=1.8  Score=40.08  Aligned_cols=134  Identities=13%  Similarity=0.042  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc----CChHHHH
Q psy16214        133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR--LQEAQEIANSILATDKQNPDAVFVRGLCLYYD----DKMDLAV  206 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~  206 (470)
                      -.+.-+.+...++..+|++..+|..+..++.+.+.  +..=+.+++++++.+|.+..+|..+=.+....    ....+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            45667788889999999999999999999987654  68889999999999999988877665554332    3356778


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLK-AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN  267 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  267 (470)
                      .+..+++..++.+..+|.....+.... .....|. .+...-...-++....|+-.+|++..
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~-~~~~~~l~sEle~v~saiFTdp~DqS  230 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN-FMPKELLQSELEMVHSAIFTDPEDQS  230 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHHHhccccccCc-cCCHHHHHHHHHHHHHHHhcCccccc
Confidence            889999999999998887762221100 0000010 00011123445566667777787654

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.26  E-value=0.081  Score=30.70  Aligned_cols=30  Identities=10%  Similarity=0.102  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        305 KALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       305 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      +++..+|.+-+..++|++|+..|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467788888888888888888888888763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.00  E-value=2.9  Score=40.27  Aligned_cols=125  Identities=11%  Similarity=-0.021  Sum_probs=53.9

Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214         48 YMMLGMYTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS  126 (470)
Q Consensus        48 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  126 (470)
                      ....++++++....... ++-|.- ..-...++..+.+.|-++.|+....        ++...            ++.  
T Consensus       271 av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~r------------FeL--  327 (443)
T PF04053_consen  271 AVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVT--------DPDHR------------FEL--  327 (443)
T ss_dssp             HHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHH------------HHH--
T ss_pred             HHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHH------------hHH--
Confidence            34456666665555311 112222 2334455566666666666655432        12221            111  


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH
Q psy16214        127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~  206 (470)
                       .++.|+.+.|.+...     ..+++..|..+|...+..|+++-|..+|.++-.        +-.+..+|...|+.+.=.
T Consensus       328 -Al~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~  393 (443)
T PF04053_consen  328 -ALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLS  393 (443)
T ss_dssp             -HHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHH
T ss_pred             -HHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHH
Confidence             233455555443322     223455666666666666666666666665432        233444555555554333


Q ss_pred             HHH
Q psy16214        207 NHF  209 (470)
Q Consensus       207 ~~~  209 (470)
                      +..
T Consensus       394 kl~  396 (443)
T PF04053_consen  394 KLA  396 (443)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG4151|consensus

Probab=93.88  E-value=0.26  Score=49.12  Aligned_cols=114  Identities=32%  Similarity=0.533  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc----hhHHHHHHHHHHHH--cCChHHHHHHHHHHHhcCCCCHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN----VAAYYGNRAACYMM--LGMYTYALDDAKLAVSLDPRFSKGLIR   77 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~   77 (470)
                      +..+...|+.+++.++|..|.--|..++.+-|.    .+....+.+.|++.  .++|..++....-++...|....++..
T Consensus        53 a~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~  132 (748)
T KOG4151|consen   53 ALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLK  132 (748)
T ss_pred             HHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhh
Confidence            345678899999999999998888888888774    35667778888776  468999999999999999999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         78 QIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      .+.+|..++.++-|++.+.-.....|.+..+.....++..
T Consensus       133 r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~  172 (748)
T KOG4151|consen  133 RARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG  172 (748)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence            9999999999999999988888999999766654444443

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.23  E-value=0.29  Score=28.04  Aligned_cols=22  Identities=18%  Similarity=0.181  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKC   26 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~   26 (470)
                      +.++..|-.++.+|+|++|+..
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHH
T ss_pred             cHHHHHHHHHHHHhhHHHHHHH
Confidence            3445555555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.11  E-value=0.61  Score=41.27  Aligned_cols=64  Identities=14%  Similarity=0.194  Sum_probs=58.9

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL  101 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  101 (470)
                      ..++..++..+...++++.++..+++.+..+|.+..+|..+-..|...|+...|+..|+++-+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            6677888999999999999999999999999999999999999999999999999999987663

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=92.82  E-value=5.1  Score=37.83  Aligned_cols=62  Identities=11%  Similarity=0.009  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh--HHHHHH--HHHHHHcCChHHHHHHHHHHHhc
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA--AYYGNR--AACYMMLGMYTYALDDAKLAVSL   67 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~--a~~~~~~g~~~~A~~~~~~al~~   67 (470)
                      .....+..++..++|..|...++.+...-|...  ..+..+  |..++..-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            445678888999999999999999887533332  233333  45556788899999999887764

>PRK11619 lytic murein transglycosylase; Provisional

Probab=92.78  E-value=13  Score=38.01  Aligned_cols=90  Identities=8%  Similarity=-0.009  Sum_probs=60.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---------------  303 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------  303 (470)
                      .......++++.+...+...-    ......+...+.+|.++..+|+.++|...|+++... .+.               
T Consensus       319 ~r~Al~~~dw~~~~~~i~~L~----~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~  393 (644)
T PRK11619        319 VRMALGTGDRRGLNTWLARLP----MEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPL  393 (644)
T ss_pred             HHHHHHccCHHHHHHHHHhcC----HhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCC
Confidence            344557788887777666632    211124567888899888899999999998887532 110               


Q ss_pred             -------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        304 -------------LKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       304 -------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                                   .......+..+..+|+...|...+..++..
T Consensus       394 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~  436 (644)
T PRK11619        394 KIDKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS  436 (644)
T ss_pred             CCCCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence                         012355677778888888888888887775

>KOG3807|consensus

Probab=92.66  E-value=7.4  Score=35.04  Aligned_cols=174  Identities=13%  Similarity=0.005  Sum_probs=91.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH-------------HHHH
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK-------------AKET  225 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------------~~~~  225 (470)
                      .....+..+..+-++....+++++|....++..++.--  .--..+|.+.++++++.......             +...
T Consensus       191 MQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~r  268 (556)
T KOG3807|consen  191 MQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLR  268 (556)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhh
Confidence            33344445555555666666666666666555554321  12233455555555442211100             0000


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Q psy16214        226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD-PNYL  304 (470)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~  304 (470)
                      .......-.....+.+..++|+..+|++.++...+..|-..  ...++-++-.++..+.-|.+....+-+.-++. |..+
T Consensus       269 RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t--~lniheNLiEalLE~QAYADvqavLakYDdislPkSA  346 (556)
T KOG3807|consen  269 RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLT--MLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSA  346 (556)
T ss_pred             cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchH
Confidence            00000011112238888999999999999999887777422  23566777777777776666655555544432 4443


Q ss_pred             HHHHHHHHHHH-------------HhC---CHHHHHHHHHHHHhcCCC
Q psy16214        305 KALSRRCKCFH-------------ALG---QYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       305 ~~~~~la~~~~-------------~~g---~~~~A~~~~~~a~~~~p~  336 (470)
                      ...+.-+.+-.             +.|   --..|++...++++.+|.
T Consensus       347 ~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH  394 (556)
T KOG3807|consen  347 AICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH  394 (556)
T ss_pred             HHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC
Confidence            33332222111             111   123578888888888886

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.51  E-value=0.24  Score=28.76  Aligned_cols=28  Identities=14%  Similarity=0.167  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214         40 YYGNRAACYMMLGMYTYALDDAKLAVSL   67 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~   67 (470)
                      ++..+|.+-+..++|++|+..|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444455555555555555555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=92.44  E-value=0.46  Score=27.24  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHH--HHHHHhcCC
Q psy16214         40 YYGNRAACYMMLGMYTYALDD--AKLAVSLDP   69 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~--~~~al~~~p   69 (470)
                      .++.+|..+...|++++|+..  |.-+..++|
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            345555555666666666665  224444444

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=92.24  E-value=2  Score=35.85  Aligned_cols=46  Identities=20%  Similarity=0.379  Sum_probs=29.0

Q ss_pred             cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHH
Q psy16214        245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAI  290 (470)
Q Consensus       245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (470)
                      ..+.++|+.++-+++++.+.+..+++.++..|+.++..+|+++.|-
T Consensus       153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4566666666666666655554445666666666666666666653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.08  E-value=0.24  Score=25.91  Aligned_cols=22  Identities=23%  Similarity=0.249  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHH
Q psy16214         74 GLIRQIKCNIALGDAPTARSNL   95 (470)
Q Consensus        74 ~~~~la~~~~~~g~~~~A~~~~   95 (470)
                      +.+.+|.++..+|++++|...+
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHH
Confidence            3445555555555555555544

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.07  E-value=0.22  Score=26.04  Aligned_cols=21  Identities=14%  Similarity=-0.045  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHhCCHHHHHHHH
Q psy16214        307 LSRRCKCFHALGQYKECVIDA  327 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~  327 (470)
                      .+.+|.++...|++++|...+
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l   24 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHH
Confidence            344444444445544444443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=91.96  E-value=0.2  Score=41.26  Aligned_cols=58  Identities=36%  Similarity=0.466  Sum_probs=50.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC--ccHHhhHHHHHHHHHHHHHHhh
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN--ATQAQKLEQEKLFKEVGEAYGI  413 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~--~~~~~~~~~~~~~~~i~~ay~~  413 (470)
                      .+.|.+|++.......+|+++|+++...+|||+...  .+.+.-+.++++++++.++|+.
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~  172 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYED  172 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence            577999999999999999999999999999997665  3456667789999999999974

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.93  E-value=4.9  Score=33.93  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=53.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      .-+++.+...+|+...+.-++..|.+......+-.++.-.|++++|...++-+-.+.|+.......+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ly   75 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLY   75 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence            3466778888888888888888888888888888888888999999888888888888876554443

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.83  E-value=6.5  Score=34.48  Aligned_cols=88  Identities=17%  Similarity=0.028  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHH--------cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CChHHH
Q psy16214         22 KALKCYSEAISVCPNVAAYYGNRAACYMM--------LGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL--GDAPTA   91 (470)
Q Consensus        22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A   91 (470)
                      .|++.-...+..+|....+|..+-.+...        .--.+.-+..+..+++-+|.+...|...-.++...  .++..-
T Consensus        50 ~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rE  129 (328)
T COG5536          50 RALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRE  129 (328)
T ss_pred             HHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchh
Confidence            45555555555555555555444443333        11123334445555555555555555444444333  334444


Q ss_pred             HHHHHHHHhcCCCChHHH
Q psy16214         92 RSNLKALQELDPDNPAIA  109 (470)
Q Consensus        92 ~~~~~~~l~~~p~~~~~~  109 (470)
                      ....++.++.++.|-..|
T Consensus       130 l~itkklld~DsrNyH~W  147 (328)
T COG5536         130 LFITKKLLDSDSRNYHVW  147 (328)
T ss_pred             HHHHHHHhccccccccee
Confidence            445555555555554443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=91.75  E-value=0.55  Score=28.33  Aligned_cols=25  Identities=8%  Similarity=0.158  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        308 SRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       308 ~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      +.+|.+|..+|+.+.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4566667777777777777776664

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=91.73  E-value=9.1  Score=33.99  Aligned_cols=131  Identities=11%  Similarity=0.105  Sum_probs=61.9

Q ss_pred             CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH---HHHH------HHHHHHHHH-HHHHHhcCCHHHHHH
Q psy16214        184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET---YKRA------KLLKAKKEE-GNEKFVAGKNQEAFD  253 (470)
Q Consensus       184 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---~~~~------~~~~~~~~~-~~~~~~~~~~~~A~~  253 (470)
                      .+++.+..+|..++..+++.+|..+|-..     +++.....   +...      .....+..+ ...|.-.++...|..
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~  162 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE  162 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence            56889999999999999999998887432     11111111   0000      001111111 445667789998888


Q ss_pred             HHHHHHhh----cccC-------ccchHHH-HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        254 IYTEALKI----DARN-------ININSKL-LHNRATVLFKMGK---YNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       254 ~~~~al~~----~p~~-------~~~~~~~-~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      .+...++.    .|+-       +...+.+ +..+-..-++.++   +..-.+.|...|+.+|.....+..+|..|....
T Consensus       163 ~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~  242 (260)
T PF04190_consen  163 LFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQ  242 (260)
T ss_dssp             HHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCC
Confidence            77766654    3320       0001111 1111111223333   223334444455566777778888888887654


Q ss_pred             C
Q psy16214        319 Q  319 (470)
Q Consensus       319 ~  319 (470)
                      .
T Consensus       243 ~  243 (260)
T PF04190_consen  243 P  243 (260)
T ss_dssp             S
T ss_pred             C
Confidence            3

; PDB: 3LKU_E 2WPV_G.

>KOG2063|consensus

Probab=91.53  E-value=20  Score=37.54  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhcCCCChHHHHHH-
Q psy16214         40 YYGNRAACYMMLGMYTYALDDAKLAVS----LDPRFSKGLIRQIKCNIALGDA--PTARSNLKALQELDPDNPAIAQES-  112 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~l-  112 (470)
                      -+..++..|...|.+++|++.+.....    .++.....+-..-..+..++..  +-..++-.-.++.+|....-...- 
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~  585 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE  585 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence            356677788888888888888888776    3344444555555555555555  555666565665555432110000 


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q psy16214        113 KALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA-SKTYKLMKAECL  162 (470)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~  162 (470)
                      -......-.......++......-++.+++.++..+.. ....+..++..|
T Consensus       586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly  636 (877)
T KOG2063|consen  586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY  636 (877)
T ss_pred             ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence            00000000122334456667777778888888777555 333333344443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=91.40  E-value=5.7  Score=33.58  Aligned_cols=56  Identities=7%  Similarity=0.084  Sum_probs=28.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .+.+...+|+...+.-++..|.+......+-.++.-.|+|++|...++-+-++.|+
T Consensus        12 L~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~   67 (273)
T COG4455          12 LDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ   67 (273)
T ss_pred             HHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence            34444455555555555555555544444555555555555555555555555554

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.37  E-value=1.2  Score=39.21  Aligned_cols=62  Identities=27%  Similarity=0.227  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      .++...+..|...|.+.+|++++++++.++|-+...+..+-.++..+|+--.|.+.|++.-+
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            44556688899999999999999999999999999999999999999999999988887653

>KOG2581|consensus

Probab=91.33  E-value=12  Score=34.75  Aligned_cols=66  Identities=14%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcC--C--CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATD--K--QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH  219 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  219 (470)
                      +...+-+.|+..+.|+.|.....+..--.  .  ..+..++.+|.+..-+++|..|.+++-.|+...|.+
T Consensus       211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            34456677888888888888887765211  1  224577888999999999999999999999999984

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.28  E-value=15  Score=35.47  Aligned_cols=197  Identities=12%  Similarity=0.016  Sum_probs=113.2

Q ss_pred             ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214         53 MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN  132 (470)
Q Consensus        53 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  132 (470)
                      ++.-....+.+.+... .+-.+++.++.||... ..++-...++++++.+=++...-..++..+             ++.
T Consensus        81 k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-------------Eki  145 (711)
T COG1747          81 KNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-------------EKI  145 (711)
T ss_pred             HHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-------------HHh
Confidence            3444455666666654 4567888999999888 567778888888888877777666666553             334


Q ss_pred             CHHHHHHHHHHHHHhC-CC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CChHHHH-HHHHHHhccCChHH
Q psy16214        133 DYRTAMFYLDRAMDQG-VA--S---KTYKLMKAECLAHLNRLQEAQEIANSILATDK-QNPDAVF-VRGLCLYYDDKMDL  204 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~-p~--~---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~-~la~~~~~~g~~~~  204 (470)
                      +-+.+..+|.+++... |.  +   .++|..+-.  +--.+.+.-+....++-.... ....+.+ ..-.-|....++.+
T Consensus       146 k~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e  223 (711)
T COG1747         146 KKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE  223 (711)
T ss_pred             chhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence            5555666666665442 11  1   112211111  112233333333333322211 1122222 22244566788999


Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHH--------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc
Q psy16214        205 AVNHFQLLLKLAPDHAKAKETYKRA--------KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI  266 (470)
Q Consensus       205 A~~~~~~~l~~~p~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  266 (470)
                      |+..+...++.+..+..+...+-..        ..+..+....++-..-.++.+++.-|++.+..+..+.
T Consensus       224 ai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnF  293 (711)
T COG1747         224 AIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNF  293 (711)
T ss_pred             HHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCce
Confidence            9999999999988877665543111        1223333334444445678889999998887766543

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=91.15  E-value=8.1  Score=36.47  Aligned_cols=60  Identities=12%  Similarity=0.092  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHh--------hcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214        155 KLMKAECLAHLNRLQEAQEIANSIL--------ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       155 ~~~~a~~~~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                      ...+.+++.-+|+|..|++.++.+-        +..+-+...++..|.+|+.+++|.+|+..|..++-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557788888999999999887541        11233466889999999999999999999988774

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=91.14  E-value=11  Score=34.02  Aligned_cols=164  Identities=15%  Similarity=0.127  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc--------------------------CChHHHHHHHHHHHhhC-CChH
Q psy16214        168 LQEAQEIANSILATDKQNPDAVFVRGLCLYYD--------------------------DKMDLAVNHFQLLLKLA-PDHA  220 (470)
Q Consensus       168 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------------------g~~~~A~~~~~~~l~~~-p~~~  220 (470)
                      -++|+.+-.-+..+.|..++++-.++.+.+..                          +-.+++...+.+++... |.-.
T Consensus       212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY  291 (415)
T COG4941         212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY  291 (415)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence            46777777777788888888777776665432                          11356666777776644 2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Q psy16214        221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK-  299 (470)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  299 (470)
                      .....+   ...   .. .......-+|..-..+|.-...+.|+.     .+-.|++.+..+..-...++...+-.... 
T Consensus       292 qlqAAI---aa~---HA-~a~~aedtDW~~I~aLYdaL~~~apSP-----vV~LNRAVAla~~~Gp~agLa~ve~L~~~~  359 (415)
T COG4941         292 QLQAAI---AAL---HA-RARRAEDTDWPAIDALYDALEQAAPSP-----VVTLNRAVALAMREGPAAGLAMVEALLARP  359 (415)
T ss_pred             HHHHHH---HHH---HH-hhcccCCCChHHHHHHHHHHHHhCCCC-----eEeehHHHHHHHhhhHHhHHHHHHHhhccc
Confidence            221111   000   00 001122347777778888777777763     34667777777777777888877766554 


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214        300 -DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFL  343 (470)
Q Consensus       300 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l  343 (470)
                       -..+...+-.+|..+.++|+.++|...|++++.+.++.....+|
T Consensus       360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l  404 (415)
T COG4941         360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFL  404 (415)
T ss_pred             ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence             34456677889999999999999999999999999985544444

>KOG2114|consensus

Probab=90.78  E-value=4.7  Score=40.93  Aligned_cols=161  Identities=17%  Similarity=0.096  Sum_probs=0.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCChHH
Q psy16214         12 NTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-DPRFSKGLIRQIKCNIALGDAPT   90 (470)
Q Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~   90 (470)
                      ..+++..-|+-|+.+-+.--.-...-...+...|.-++..|++++|...|-+++.. +|...--.+      ....+..+
T Consensus       342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf------Ldaq~Ikn  415 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF------LDAQRIKN  415 (933)
T ss_pred             HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh------cCHHHHHH


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC-------HHHHHH------HHHHHHHhCCCCHHHHHH
Q psy16214         91 ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAND-------YRTAMF------YLDRAMDQGVASKTYKLM  157 (470)
Q Consensus        91 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~A~~------~~~~~l~~~p~~~~~~~~  157 (470)
                      -..+++.+.+..-.+.+-...|-.+|...+..+.-..++..++       .+.|++      +++.+.-+......--..
T Consensus       416 Lt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~v  495 (933)
T KOG2114|consen  416 LTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWV  495 (933)
T ss_pred             HHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHH


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q psy16214        158 KAECLAHLNRLQEAQEIANSI  178 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~  178 (470)
                      +-.++...++|++|+.++..+
T Consensus       496 l~ille~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  496 LDILLEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHhcCHHHHHHHHhcC

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=90.59  E-value=4.6  Score=34.73  Aligned_cols=112  Identities=14%  Similarity=0.074  Sum_probs=71.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcccCcc--------chHHHHHHHHHHHHHcCCHHH-H-HHHHHHHHHh--CCCC--HHH
Q psy16214        241 EKFVAGKNQEAFDIYTEALKIDARNIN--------INSKLLHNRATVLFKMGKYNE-A-IADCTLALEK--DPNY--LKA  306 (470)
Q Consensus       241 ~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~la~~~~~~g~~~~-A-~~~~~~al~~--~p~~--~~~  306 (470)
                      -.+..|+++.|+++..-+|+.+-..|+        ..+.-...-+......|..-+ . ...+......  -|+.  .+.
T Consensus        92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl  171 (230)
T PHA02537         92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL  171 (230)
T ss_pred             eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence            456789999999999999976533221        112333334445555565211 1 1222222111  2333  445


Q ss_pred             HHHHHHHHH---------HhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhc
Q psy16214        307 LSRRCKCFH---------ALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKR  352 (470)
Q Consensus       307 ~~~la~~~~---------~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~  352 (470)
                      +...|..++         ..++...|+.++++|++++|...+...+.+++..++.
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~  226 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhh
Confidence            666677673         4567889999999999999998888888888887764

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.40  E-value=0.39  Score=39.58  Aligned_cols=54  Identities=33%  Similarity=0.453  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        372 DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       372 ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      .++..|+.+...+|||+....+...+..+-..+..++.+|.+|.||-+|..|=-
T Consensus        19 ~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l   72 (174)
T COG1076          19 ALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL   72 (174)
T ss_pred             HhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            455679999999999999988888888888999999999999999999999854

>KOG3807|consensus

Probab=90.22  E-value=14  Score=33.42  Aligned_cols=92  Identities=17%  Similarity=0.049  Sum_probs=66.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------------C------
Q psy16214         10 DGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD--------------P------   69 (470)
Q Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------------p------   69 (470)
                      .-....+..+..+-|+.-..+++++|..+.+|..++.--  ..-..+|...++++++..              +      
T Consensus       190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~  267 (556)
T KOG3807|consen  190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL  267 (556)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence            334556677888889999999999999999988887532  223455666666665531              1      


Q ss_pred             ---CCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy16214         70 ---RFS--KGLIRQIKCNIALGDAPTARSNLKALQELDP  103 (470)
Q Consensus        70 ---~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  103 (470)
                         .+.  -+-.++|.|-.++|+..+|++.++.+.+-.|
T Consensus       268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence               122  2345789999999999999999999888666

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=89.69  E-value=4.9  Score=37.85  Aligned_cols=59  Identities=19%  Similarity=0.133  Sum_probs=46.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcC---------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVC---------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVS   66 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~   66 (470)
                      +.-+.+++.-.|||..|++.++.+ +++         +-+...++..|-+|+.+++|.+|+..|..++-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667888899999999988764 222         22467889999999999999999999988764

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.44  E-value=1.9  Score=38.02  Aligned_cols=59  Identities=22%  Similarity=0.238  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214         40 YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL   98 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~   98 (470)
                      .+...+..|...|.+.+|++..++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            34455677778888888888888888888888888888888888888877777777764

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=89.38  E-value=14  Score=32.26  Aligned_cols=171  Identities=10%  Similarity=0.057  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-hHHHHHHHHHH-hccCChHHHHHHHHHHHhhCCCh--HHHHHHHHHH-
Q psy16214        155 KLMKAECLAHLNRLQEAQEIANSILATDKQN-PDAVFVRGLCL-YYDDKMDLAVNHFQLLLKLAPDH--AKAKETYKRA-  229 (470)
Q Consensus       155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~-  229 (470)
                      +..+|.+..+.++|++.+.++++++..+|.- .+-...++.+| ...|....+...+..........  ......+... 
T Consensus         4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk   83 (236)
T PF00244_consen    4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK   83 (236)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence            4568888899999999999999999886653 34445555555 22344445555554444332221  1111111000 


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc-----C-----CHHHHHHHHHHHHHh
Q psy16214        230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM-----G-----KYNEAIADCTLALEK  299 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~~~~al~~  299 (470)
                      ..+...     +   ..--.+.+...+..+--...++....-.+-..|..|.-+     |     -.+.|...|++|+.+
T Consensus        84 ~kie~E-----L---~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~  155 (236)
T PF00244_consen   84 KKIEDE-----L---IDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEI  155 (236)
T ss_dssp             HHHHHH-----H---HHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----H---HHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHH
Confidence            000000     0   000123333333322222222211111122233333211     1     136678888888754


Q ss_pred             -----CCCCHH---HHHHHHHHH-HHhCCHHHHHHHHHHHHhc
Q psy16214        300 -----DPNYLK---ALSRRCKCF-HALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       300 -----~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~a~~~  333 (470)
                           .|.+|.   ..++.+..| ..+|+.++|+...++++..
T Consensus       156 a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~  198 (236)
T PF00244_consen  156 AKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE  198 (236)
T ss_dssp             HHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred             HhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                 566643   334445444 5689999999999988753

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=89.33  E-value=1.3  Score=34.90  Aligned_cols=51  Identities=22%  Similarity=0.135  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA   88 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   88 (470)
                      .+.....+...+..|++.-|..++..++..+|++..+...++.++.++|.-
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            455666677777777777777777777777777777777777777766643

>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.02  E-value=15  Score=32.30  Aligned_cols=176  Identities=14%  Similarity=0.062  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214         41 YGNRAACYMMLGMY-TYALDDAKLAVSLDPRFSKGLIRQIKCNIA--------LGDAPTARSNLKALQELDPDNPAIAQE  111 (470)
Q Consensus        41 ~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~  111 (470)
                      ...+..+.....++ ..|++.-...+..+|.....|...-.+...        ..-.+.-+..+..+++-+|.+-.+|..
T Consensus        34 l~gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~H  113 (328)
T COG5536          34 LMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHH  113 (328)
T ss_pred             HHHHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHH
Confidence            33444444444443 467777777787888777766655544443        122455667788889999999888876


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHHHHHHHHHhhcCCCC
Q psy16214        112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL------AHLNRLQEAQEIANSILATDKQN  185 (470)
Q Consensus       112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~------~~~~~~~~A~~~~~~~l~~~p~~  185 (470)
                      ...+.          ..+...++..-+...+++++.++.+-..|..+-.+.      .....+....++-..++..++.+
T Consensus       114 R~~~L----------e~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N  183 (328)
T COG5536         114 RQWML----------ELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYN  183 (328)
T ss_pred             HHHHH----------HhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCC
Confidence            55542          234445677788888999999998887765544444      44445556677777888899999


Q ss_pred             hHHHHHH---HHHHhccCC------hHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        186 PDAVFVR---GLCLYYDDK------MDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       186 ~~~~~~l---a~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      ..+|..+   -......|+      +++-+.+....+-.+|++..+|..+
T Consensus       184 ~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~  233 (328)
T COG5536         184 NSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYL  233 (328)
T ss_pred             hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHH
Confidence            9998877   333333454      4455666777777899999888765

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=88.95  E-value=9.7  Score=29.91  Aligned_cols=120  Identities=17%  Similarity=0.147  Sum_probs=66.4

Q ss_pred             HHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214        161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN  240 (470)
Q Consensus       161 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (470)
                      .+...+.....+.+++.++..++.++..+..+..++... +..+.+..++.    .++....-..             +.
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd~~~~-------------~~   77 (140)
T smart00299       16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYDIEKV-------------GK   77 (140)
T ss_pred             HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCCHHHH-------------HH
Confidence            344556778888888888887777777777777777654 34455555552    1111111111             44


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214        241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK-MGKYNEAIADCTLALEKDPNYLKALSRRCKCFH  315 (470)
Q Consensus       241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  315 (470)
                      ...+.+-+++++-++.+.-    .        +...-.++.. .++++.|++++.+     +.+++.|..++..+.
T Consensus        78 ~c~~~~l~~~~~~l~~k~~----~--------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       78 LCEKAKLYEEAVELYKKDG----N--------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             HHHHcCcHHHHHHHHHhhc----C--------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            4555566666666665421    1        1111122222 2677777777765     345667776665554

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.85  E-value=1.9  Score=38.78  Aligned_cols=62  Identities=18%  Similarity=0.051  Sum_probs=44.0

Q ss_pred             HHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214         23 ALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus        23 A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      |+.+|.+|+.+.|.+...|+.+|.++...|+.-.|+-+|-+++-...-.+.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888877777776654456677777666665

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.23  E-value=2.2  Score=29.24  Aligned_cols=31  Identities=23%  Similarity=0.130  Sum_probs=21.8

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAIS   32 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~   32 (470)
                      ..+..+...|..+=..|++.+|+.+|+++++
T Consensus         4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe   34 (75)
T cd02682           4 EMARKYAINAVKAEKEGNAEDAITNYKKAIE   34 (75)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3455667777777777777777777776654

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=87.32  E-value=34  Score=34.88  Aligned_cols=24  Identities=21%  Similarity=0.159  Sum_probs=15.4

Q ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        312 KCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       312 ~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .-+...|++++|++.+++. .+-|.
T Consensus       513 f~~~~~g~~~~AL~~i~~L-~liP~  536 (613)
T PF04097_consen  513 FDLYHAGQYEQALDIIEKL-DLIPL  536 (613)
T ss_dssp             HHHHHTT-HHHHHHHHHHT-T-S-S
T ss_pred             HHHHHcCCHHHHHHHHHhC-CCCCC
Confidence            3456789999999888854 46674

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.05  E-value=17  Score=30.51  Aligned_cols=77  Identities=9%  Similarity=-0.008  Sum_probs=53.6

Q ss_pred             HHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh----HHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH----AKAKETYKRAKLLKAKKE  237 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~~~~~~~~~~~~~  237 (470)
                      ...-.-++|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+.+    +.+...+           
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL-----------  184 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSL-----------  184 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH-----------
Confidence            33434456666666554322 256778888887766 678899999999999876543    5555555           


Q ss_pred             HHHHHHhcCCHHHHH
Q psy16214        238 EGNEKFVAGKNQEAF  252 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~  252 (470)
                       +.++...++++.|-
T Consensus       185 -as~~~~~~~~e~AY  198 (203)
T PF11207_consen  185 -ASIYQKLKNYEQAY  198 (203)
T ss_pred             -HHHHHHhcchhhhh
Confidence             88999999988874

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=86.84  E-value=20  Score=31.23  Aligned_cols=62  Identities=10%  Similarity=0.079  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHH-HcCChHHHHHHHHHHHh
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYM-MLGMYTYALDDAKLAVS   66 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~-~~g~~~~A~~~~~~al~   66 (470)
                      +.+..+|..+-+.++|++.+.+..+++..+|.- ..-...++.+|- ..|....+...+.....
T Consensus         2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~   65 (236)
T PF00244_consen    2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ   65 (236)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence            356778888888899999999999988887753 344455555552 24555555555544443

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG0276|consensus

Probab=86.81  E-value=8.4  Score=37.74  Aligned_cols=50  Identities=18%  Similarity=0.130  Sum_probs=37.5

Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214         46 ACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        46 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      .+.+++|+++.|.+...++     ++..-|..||.+.+..+++..|.+++.++..
T Consensus       645 elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d  694 (794)
T KOG0276|consen  645 ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD  694 (794)
T ss_pred             hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence            3445667777776655433     4667788999999999999999999998765

>KOG0686|consensus

Probab=86.50  E-value=12  Score=34.86  Aligned_cols=141  Identities=11%  Similarity=0.012  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----c
Q psy16214        187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI----D  262 (470)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~  262 (470)
                      .++..+|.-|...|+.+.|++.|.++-........+....         .+.-.+....++|..-..+..+|...    .
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~---------ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~  221 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMC---------LNLILVSIYMGNWGHVLSYISKAESTPDANE  221 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHH---------HHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence            3677788888889999999999888766554443332221         22245556677887777777777654    1


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH-H---HhCCHHHHHHHHHHH
Q psy16214        263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--------DPNYLKALSRRCKCF-H---ALGQYKECVIDAEKI  330 (470)
Q Consensus       263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~-~---~~g~~~~A~~~~~~a  330 (470)
                      .......+.+.+.-|.+.+.+++|..|..++-.+.--        .|.+..+|..+.-+- +   .+..--..-..|+..
T Consensus       222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~f  301 (466)
T KOG0686|consen  222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLF  301 (466)
T ss_pred             hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhH
Confidence            1122223456777788888888999999888665432        344444443332211 0   111111233467777


Q ss_pred             HhcCCC
Q psy16214        331 YKMDNS  336 (470)
Q Consensus       331 ~~~~p~  336 (470)
                      +++.|.
T Consensus       302 lel~Pq  307 (466)
T KOG0686|consen  302 LELEPQ  307 (466)
T ss_pred             HhcChH
Confidence            777775

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.10  E-value=1.9  Score=25.98  Aligned_cols=27  Identities=19%  Similarity=0.142  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        273 LHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      .+.+|.+|..+|+.+.|.+.+++++..
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            357899999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.06  E-value=13  Score=32.65  Aligned_cols=82  Identities=17%  Similarity=0.221  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHhhcccC--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHH
Q psy16214        250 EAFDIYTEALKIDARN--ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSRRCKCFHALGQYK  321 (470)
Q Consensus       250 ~A~~~~~~al~~~p~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~  321 (470)
                      ..++++++|+......  ......+...+|..|...|++++|+.+++.+.......      ..++..+..|...+|+.+
T Consensus       156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~  235 (247)
T PF11817_consen  156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE  235 (247)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence            3445555554332211  11234566788999999999999999999997654332      567778889999999998


Q ss_pred             HHHHHHHHHH
Q psy16214        322 ECVIDAEKIY  331 (470)
Q Consensus       322 ~A~~~~~~a~  331 (470)
                      ..+...-+++
T Consensus       236 ~~l~~~leLl  245 (247)
T PF11817_consen  236 DYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHh
Confidence            8777665544

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=85.81  E-value=1.8  Score=23.52  Aligned_cols=28  Identities=21%  Similarity=0.290  Sum_probs=16.1

Q ss_pred             CCHHHHHHHHHHHhhcCCchhHHHHHHH
Q psy16214         18 KQYSKALKCYSEAISVCPNVAAYYGNRA   45 (470)
Q Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~a   45 (470)
                      |+++.|...|++++...|.++..|...+
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~   28 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYA   28 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence            3455566666666666665555555444

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=85.56  E-value=9.1  Score=32.97  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCC
Q psy16214        269 NSKLLHNRATVLF---------KMGKYNEAIADCTLALEKDPNY  303 (470)
Q Consensus       269 ~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~  303 (470)
                      .+..+-..|..+.         ..++...|+.++++|++++|+.
T Consensus       168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            5677777888774         4567889999999999999885

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.51  E-value=3.7  Score=36.86  Aligned_cols=60  Identities=15%  Similarity=-0.026  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         57 ALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        57 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      |..+|.+|+.+.|.+...+..+|.++...|+.-.|+-+|-+++-.....+.+...+..+.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf   60 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLF   60 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            678999999999999999999999999999999999999999976655566666666553

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1463|consensus

Probab=85.32  E-value=29  Score=31.62  Aligned_cols=280  Identities=13%  Similarity=0.061  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--CCch--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCC
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISV--CPNV--------AAYYGNRAACYMMLGMYTYALDDAKLAVSL---DPR   70 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~   70 (470)
                      +......+.......++++++..|...+..  .|.+        ......+|..|...|+..+-.......-..   -+.
T Consensus         4 ~~~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K   83 (411)
T KOG1463|consen    4 AASLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK   83 (411)
T ss_pred             hHHHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh
Confidence            334567778888888899999999999874  2221        456778899999999887765555443221   111


Q ss_pred             --CHHHHHHHHHHH-HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         71 --FSKGLIRQIKCN-IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        71 --~~~~~~~la~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                        ..+....+.... ..-+..+.-+..+..+++-....      -.......-....+..++..++|.+|+.....++..
T Consensus        84 akaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e------kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rE  157 (411)
T KOG1463|consen   84 AKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKRE------KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRE  157 (411)
T ss_pred             HHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence              011111111111 11122222233333332211100      001111111223445577888999999888777643


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-----CCC--hHHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214        148 ------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATD-----KQN--PDAVFVRGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       148 ------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                            .+.-.++...-..+|....+..+|...+..+-...     |..  ...-..-|.++....+|..|..+|-++++
T Consensus       158 lKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfE  237 (411)
T KOG1463|consen  158 LKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFE  237 (411)
T ss_pred             HHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHc
Confidence                  22334566667788888889888888777654321     111  12223346666677899999999999987


Q ss_pred             hCC---ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHhhcccCccchHHHHHHHHHHHHH--cCCHH
Q psy16214        215 LAP---DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYT--EALKIDARNININSKLLHNRATVLFK--MGKYN  287 (470)
Q Consensus       215 ~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~~~~~la~~~~~--~g~~~  287 (470)
                      -..   ++..+...++..         -.+-...+..++--..+.  .+++....    ...+....+.++.+  +.+|+
T Consensus       238 gf~s~~~~v~A~~sLKYM---------lLcKIMln~~ddv~~lls~K~~l~y~g~----~i~AmkavAeA~~nRSLkdF~  304 (411)
T KOG1463|consen  238 GFDSLDDDVKALTSLKYM---------LLCKIMLNLPDDVAALLSAKLALKYAGR----DIDAMKAVAEAFGNRSLKDFE  304 (411)
T ss_pred             cccccCCcHHHHHHHHHH---------HHHHHHhcCHHHHHHHHhhHHHHhccCc----chHHHHHHHHHhcCCcHHHHH
Confidence            331   222333222111         222333445554433333  33443332    23455566666543  45788


Q ss_pred             HHHHHHHHHHHhCCC
Q psy16214        288 EAIADCTLALEKDPN  302 (470)
Q Consensus       288 ~A~~~~~~al~~~p~  302 (470)
                      .|+..|..-+..+|-
T Consensus       305 ~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  305 KALADYKKELAEDPI  319 (411)
T ss_pred             HHHHHhHHHHhcChH
Confidence            888888887776654

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=85.22  E-value=37  Score=32.67  Aligned_cols=167  Identities=16%  Similarity=0.067  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC--------------CHHHHHHH
Q psy16214         75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN--------------DYRTAMFY  140 (470)
Q Consensus        75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------~~~~A~~~  140 (470)
                      ...+|.....+++|+.|...|+.+.+-.. +..+|..++-+.+...     +..+-.+              -++.|...
T Consensus       211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~-~Dkaw~~~A~~~Em~a-----lsl~~~~~~~~~k~~~~~~~~~le~A~~~  284 (414)
T PF12739_consen  211 MRRLADLAFMLRDYELAYSTYRLLKKDFK-NDKAWKYLAGAQEMAA-----LSLLMQGQSISAKIRKDEIEPYLENAYYT  284 (414)
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHh-hchhHHHHHhHHHHHH-----HHHHhcCCCCccccccccHHHHHHHHHHH
Confidence            45688899999999999999988877443 3344544444433321     1222211              12233333


Q ss_pred             HHHHH----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCC-----hHHHHHHHHHHhccCChHHHHHHH
Q psy16214        141 LDRAM----DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT--DKQN-----PDAVFVRGLCLYYDDKMDLAVNHF  209 (470)
Q Consensus       141 ~~~~l----~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~-----~~~~~~la~~~~~~g~~~~A~~~~  209 (470)
                      |.+.-    .............++++...+.+.+|...+-+....  ..+.     .-.+-..|.++             
T Consensus       285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~-------------  351 (414)
T PF12739_consen  285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY-------------  351 (414)
T ss_pred             HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh-------------
Confidence            33311    111123345556677777888877777666655543  2111     12222333333             


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214        210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  264 (470)
                       ..+..+...+......   +...-..-.|..+...|+...|+.+|..++.....
T Consensus       352 -~~~~~~~~~~~~~r~R---K~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~  402 (414)
T PF12739_consen  352 -ASLRSNRPSPGLTRFR---KYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG  402 (414)
T ss_pred             -cccccCCCCccchhhH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence             1111101000000000   00000111288899999999999999999876543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG0889|consensus

Probab=85.13  E-value=1e+02  Score=37.71  Aligned_cols=83  Identities=19%  Similarity=0.187  Sum_probs=66.9

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----CC----HHHHHHHHHHHHhcCCChhHH
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL----GQ----YKECVIDAEKIYKMDNSRENH  340 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~----~~~A~~~~~~a~~~~p~~~~~  340 (470)
                      .+..+...|..+.++|+.++|-..|..|++++..-+++|..-|......    ..    -..|+.+|-+|....-+...+
T Consensus      2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaR 2890 (3550)
T KOG0889|consen 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKAR 2890 (3550)
T ss_pred             HHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhH
Confidence            4677888999999999999999999999999999999999988766532    11    246788888888888777777


Q ss_pred             HHHHHHHHHhh
Q psy16214        341 NFLEEAKRLLK  351 (470)
Q Consensus       341 ~~l~~~~~~~~  351 (470)
                      ..|.+..-.+.
T Consensus      2891 k~iakvLwLls 2901 (3550)
T KOG0889|consen 2891 KLIAKVLWLLS 2901 (3550)
T ss_pred             HHHHHHHHHHH
Confidence            77777766554

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=84.75  E-value=35  Score=32.03  Aligned_cols=56  Identities=11%  Similarity=-0.215  Sum_probs=40.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCc-----hhHHHHHH--HHHHHHcCChHHHHHHHHH
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPN-----VAAYYGNR--AACYMMLGMYTYALDDAKL   63 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~--a~~~~~~g~~~~A~~~~~~   63 (470)
                      ...+..+++.++|..|...|.+++...++     ....+..+  |..++..-++++|.+.+++
T Consensus       134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~  196 (380)
T TIGR02710       134 QGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND  196 (380)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence            34566889999999999999999877542     13334444  4445667889999999985

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=84.71  E-value=3  Score=22.60  Aligned_cols=28  Identities=21%  Similarity=0.132  Sum_probs=16.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        285 KYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       285 ~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                      +.+.|...|++++...|.++..|...+.
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            4555666666666666666666555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1920|consensus

Probab=83.84  E-value=68  Score=34.64  Aligned_cols=18  Identities=17%  Similarity=0.268  Sum_probs=11.7

Q ss_pred             HHHHhcCCHHHHHHHHHH
Q psy16214         12 NTQYKLKQYSKALKCYSE   29 (470)
Q Consensus        12 ~~~~~~g~~~~A~~~~~~   29 (470)
                      ..++..++|.+|.+..++
T Consensus       685 r~~l~~~~y~~AF~~~Rk  702 (1265)
T KOG1920|consen  685 RTLLDRLRYKEAFEVMRK  702 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            345666777777776654

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=83.76  E-value=3.7  Score=32.32  Aligned_cols=52  Identities=21%  Similarity=0.124  Sum_probs=38.6

Q ss_pred             CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy16214         71 FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF  122 (470)
Q Consensus        71 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  122 (470)
                      -.......+...+..|++.-|.+....++..+|++..+....+.++...+.-
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            3455566677777888899999999999999999998888888888776654

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.69  E-value=17  Score=32.08  Aligned_cols=61  Identities=16%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcccC--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDARN--ININSKLLHNRATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (470)
                      ..|..|+..|++++|+.+|+.+......+  ..+...++..+..|...+|+.+..+..+-+.+
T Consensus       183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            34999999999999999999996553322  22345778888999999999999888776654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.76  E-value=30  Score=32.79  Aligned_cols=66  Identities=20%  Similarity=0.153  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                      -....+...+..++|..|...+..+...-|.+.. +       .....+..+......-++.+|...++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~-------~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREE-Y-------QRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-H-------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3455677888999999999999999885333333 2       2233345555677788999999999988765

>KOG0686|consensus

Probab=82.28  E-value=44  Score=31.34  Aligned_cols=97  Identities=15%  Similarity=0.061  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----CCHH
Q psy16214        234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD----P----NYLK  305 (470)
Q Consensus       234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p----~~~~  305 (470)
                      .+.+.|..|...|+++.|++.|.++-..+.+... ....+.++-.+-..+|+|..-..+-.+|.+.-    .    -.+.
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh-vInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k  230 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH-VINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK  230 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence            3444599999999999999999997665544332 35778888888899999988888877776651    0    1134


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy16214        306 ALSRRCKCFHALGQYKECVIDAEKIY  331 (470)
Q Consensus       306 ~~~~la~~~~~~g~~~~A~~~~~~a~  331 (470)
                      +...-|.+.+.+++|..|..++-.+.
T Consensus       231 l~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  231 LKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            55666777788889999998887654

>KOG2063|consensus

Probab=81.93  E-value=44  Score=35.18  Aligned_cols=175  Identities=13%  Similarity=0.036  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcC----CCChHHHHHHHHHHhccCCh--HHHHHHHHHHHhhCCChHHHHHHH-H
Q psy16214        155 KLMKAECLAHLNRLQEAQEIANSILATD----KQNPDAVFVRGLCLYYDDKM--DLAVNHFQLLLKLAPDHAKAKETY-K  227 (470)
Q Consensus       155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~~-~  227 (470)
                      +..++.+|...|++++|++.+.+.....    +...+.+-..-..+-..+..  +-..++-.=.+..+|....-...- .
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~  586 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED  586 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence            5668889999999999999999988743    22233333333333334443  455555555555555432111000 0


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc--------CCHHHHHHH--HHHHH
Q psy16214        228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM--------GKYNEAIAD--CTLAL  297 (470)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~--~~~al  297 (470)
                      ....-..-.+...-++......-++.+++.++.......   ...+..++..|...        ++-+++.+.  .++..
T Consensus       587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~---~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~  663 (877)
T KOG2063|consen  587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTS---TLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLL  663 (877)
T ss_pred             hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccc---hHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHH
Confidence            000000001124456677788889999999887655432   22333333333321        122233333  22222


Q ss_pred             Hh-------CCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        298 EK-------DPNY-------LKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       298 ~~-------~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      ..       +|+.       ...|..++.++.++|+.++|+..|-..+.
T Consensus       664 ~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~  712 (877)
T KOG2063|consen  664 DFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD  712 (877)
T ss_pred             HHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence            11       2221       56778889999999999999988877765

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=80.52  E-value=56  Score=31.41  Aligned_cols=96  Identities=14%  Similarity=-0.030  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch------hHHHHHHHHHHHHcCCh-------HHHHHHHHHHHhc-----
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV------AAYYGNRAACYMMLGMY-------TYALDDAKLAVSL-----   67 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~a~~~~~~g~~-------~~A~~~~~~al~~-----   67 (470)
                      ....+|+.++..++|+-|...|+.+.+-.-++      +.+.-..|.+++..+..       +....+++.++..     
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~  289 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA  289 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence            46778999999999999999999987754322      33444455566655532       1333333333221     


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214         68 ------DPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL  101 (470)
Q Consensus        68 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  101 (470)
                            ......+....+.++...+.+.+|...+-+....
T Consensus       290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence                  1123456666777888888888877777666543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>smart00101 14_3_3 14-3-3 homologues

Probab=80.30  E-value=40  Score=29.54  Aligned_cols=169  Identities=9%  Similarity=0.013  Sum_probs=86.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhc-CC--CChHHHHHHHHHHh-ccCChHHHHHHHHHHHhhC--CChHHHHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILAT-DK--QNPDAVFVRGLCLY-YDDKMDLAVNHFQLLLKLA--PDHAKAKETYKRA  229 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~-~p--~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~  229 (470)
                      ..+|.+..+.++|++.+.+.++++.. +|  -+.+-...+..+|- ..|....+...+...-...  ..+.......   
T Consensus         5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~---   81 (244)
T smart00101        5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASI---   81 (244)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHH---
Confidence            45788888899999999999998886 43  45666677777763 3466677777766533221  1111100000   


Q ss_pred             HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH-----cCC-----HHHHHHHHHHHHH
Q psy16214        230 KLLKAKKEEGNEKFV-AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK-----MGK-----YNEAIADCTLALE  298 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~~~~~al~  298 (470)
                         ..+..  .+--. ..--.+.+.+++..+--...++....-.+-..|..|.-     .|+     .+.|...|+.|++
T Consensus        82 ---~~yr~--kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e  156 (244)
T smart00101       82 ---KEYRG--KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQD  156 (244)
T ss_pred             ---HHHHH--HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence               00000  00000 00112333333333222222221111111122333322     222     4578888888876


Q ss_pred             h-----CCCCHH---HHHHHHHH-HHHhCCHHHHHHHHHHHHh
Q psy16214        299 K-----DPNYLK---ALSRRCKC-FHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       299 ~-----~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~a~~  332 (470)
                      +     .|.+|-   ..++.+.. |..+++.++|....++++.
T Consensus       157 ~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd  199 (244)
T smart00101      157 IALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  199 (244)
T ss_pred             HHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4     466643   23333444 3457999999988888875

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.22  E-value=3  Score=28.74  Aligned_cols=30  Identities=23%  Similarity=0.217  Sum_probs=20.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAIS   32 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~   32 (470)
                      .+..+...|..+=..|+|++|+.+|..+++
T Consensus         5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681           5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            445566666777777777777777776654

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function

Probab=80.03  E-value=30  Score=27.89  Aligned_cols=69  Identities=30%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hccc---CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214        230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALK-IDAR---NININSKLLHNRATVLFKMGKYNEAIADCTLALE  298 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (470)
                      .........++..++.|+...|.+.++.+-. +.-.   -|-.........+..+...|++.+|...+..++.
T Consensus        73 ~~~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~  145 (155)
T PF10938_consen   73 PEKKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD  145 (155)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            3445555669999999999999999987531 1100   0111234566778899999999999999988874

The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	470
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		1e-28
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-28
1hdj_A	77	Human Hsp40 (Hdj-1), Nmr Length = 77		4e-13
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		5e-13
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		7e-13
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		8e-04
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		7e-13
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		9e-13
1wao_1	477	Pp5 Structure Length = 477		1e-12
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		6e-12
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		7e-12
2ej7_A	82	Solution Structure Of The Dnaj Domain Of The Human		1e-11
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		3e-11
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		4e-11
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		1e-04
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		6e-11
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		6e-11
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		8e-11
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-10
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-10
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		7e-04
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		5e-10
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		8e-10
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		1e-09
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		8e-09
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		2e-08
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		4e-08
2ctr_A	88	Solution Structure Of J-Domain From Human Dnaj Subf		4e-08
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		4e-08
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		4e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		7e-08
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		8e-08
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		4e-07
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		4e-07
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		4e-07
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		4e-07
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		3e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		4e-07
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		5e-07
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-06
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		1e-06
1wjz_A	94	Soluiotn Structure Of J-Domain Of Mouse Dnaj Like P		1e-06
2l6l_A	155	Solution Structure Of Human J-Protein Co-Chaperone,		1e-06
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		2e-06
2yua_A	99	Solution Structure Of The Dnaj Domain From Human Wi		2e-06
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-06
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-05
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		1e-05
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-04
2l6j_A	111	Tah1 Complexed By Meevd Length = 111		4e-04
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		4e-04
2ctq_A	112	Solution Structure Of J-Domain From Human Dnaj Subf		5e-04
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		7e-04

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score =  124 bits (311), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 197/433 (45%), Gaps = 18/433 (4%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
            EKH E G       Q + AL  +  A+   P N  AYY  RA  ++ +G    AL D  
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAMGKSKAALPDLT 84
Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
             + L   F+   +++    +  G    A  + K + +    NP+  +E +A   + K+ 
Sbjct: 85  KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSD 141
Query: 123 E------GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
           E       A  AF + DY  A+ +LD+ ++  V     + ++AEC       ++A  I++
Sbjct: 142 EMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA--ISD 199
Query: 177 SILATDKQNPDA-VFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXX 234
              A+  +N +   F +   LYY     +L+++  +  LKL  DH +    YK+      
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 235 XXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
                 E    G+  +A   Y   +K +        +          K  K  EAI  C+
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKRS 353
             L+ +P+ + AL  R + +     Y E + D E   +  +N ++    LE+A+RLLK+S
Sbjct: 320 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
           + +DYYKILGV +NA   +I KAYRK AL  HPD   N  + +K   EK F ++  A  +
Sbjct: 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--AEKKFIDIAAAKEV 437
Query: 414 LSDPTKRSRYDRG 426
           LSDP  R ++D G
Sbjct: 438 LSDPEMRKKFDDG 450

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 195/433 (45%), Gaps = 18/433 (4%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
            EKH E G       Q + AL  +  A+   P N  AYY  RA  ++  G    AL D  
Sbjct: 26  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAXGKSKAALPDLT 84
Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
             + L   F+   +++    +  G    A  + K + +    NP+  +E +A   + K+ 
Sbjct: 85  KVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSENEEKEAQSQLIKSD 141
Query: 123 EG------ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
           E       A  AF + DY  A+ +LD+ ++  V     + ++AEC       ++A  I++
Sbjct: 142 EXQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKA--ISD 199
Query: 177 SILATDKQNPDA-VFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXX 234
              A+  +N +   F +   LYY     +L+++  +  LKL  DH +    YK+      
Sbjct: 200 LKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 235 XXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
                 E    G+  +A   Y    K +        +          K  K  EAI  C+
Sbjct: 260 LIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319
Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKRS 353
             L+ +P+ + AL  R + +     Y E + D E   +  +N ++    LE+A+RLLK+S
Sbjct: 320 EVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS 379
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
           + +DYYKILGV +NA   +I KAYRK AL  HPD   N  + +K   EK F ++  A  +
Sbjct: 380 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK--AEKKFIDIAAAKEV 437
Query: 414 LSDPTKRSRYDRG 426
           LSDP  R ++D G
Sbjct: 438 LSDPEXRKKFDDG 450

>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr Length = 77

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 7/80 (8%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYY+ LG+ + AS ++IK+AYR++AL +HPD++      +K      FKE+ EAY +LS
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEK------FKEIAEAYDVLS 56
Query: 416 DPTKRSRYDR-GEDIMEDSG 434
           DP KR  +DR GE+ ++ SG
Sbjct: 57  DPRKREIFDRYGEEGLKGSG 76

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K   N  +K K Y  A+K YS+AI + P+ A YYGNR+  Y+    Y YAL DA  
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDP 103
           A+ LD ++ KG  R+   N+ALG    A  + + + ++ P
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 112

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
            N+ F A   + A   Y++A++++  N    +    NR+    +   Y  A+ D T A+E
Sbjct: 20  ANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIE 75
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
            D  Y+K   RR     ALG+++  + D E + K+
Sbjct: 76  LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 4/73 (5%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
           S + +YY++LGV  +AS +DIKKAYRK AL  HPD++ +     K E EK FK V EAY 
Sbjct: 6   SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPD----NKEEAEKKFKLVSEAYE 61
Query: 413 ILSDPTKRSRYDR 425
           +LSD  KRS YDR
Sbjct: 62  VLSDSKKRSLYDR 74

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 5/80 (6%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
           YY+IL V ++AS+DDIKKAYR++AL  HPD++ +     K   EK FKEV EAY +LSD 
Sbjct: 4   YYEILDVPRSASADDIKKAYRRKALQWHPDKNPD----NKEFAEKKFKEVAEAYEVLSDK 59
Query: 418 TKRSRYDR-GEDIMEDSGMG 436
            KR  YDR G + +  +G G
Sbjct: 60  HKREIYDRYGREGLTGTGTG 79

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 57/100 (57%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K   N  +K K Y  A+K YS+AI + P+ A YYGNR+  Y+    Y YAL DA  
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDP 103
           A+ LD ++ KG  R+   N+ALG    A  + + + ++ P
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP 105

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 149/362 (41%), Gaps = 18/362 (4%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAK 62
            EKH E G       Q + AL  +  A+   P N  AYY  RA  ++  G    AL D  
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYY-RRATVFLAXGKSKAALPDLT 61
Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
             ++L   F+   +++    +  G    A  + K + +    NP+  +E +A   + K  
Sbjct: 62  KVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKAD 118
Query: 123 EG------ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
           E       A  AF+  DY  A+ +LD+ ++  V     + ++AEC     +  E ++  +
Sbjct: 119 EXQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI---KEGEPRKAIS 175
Query: 177 SILATDKQNPD--AVFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXX 233
            + A  K   D    F +   LYY     +L+++  +  LKL  DH +    YK+     
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235
Query: 234 XXXXXGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
                  E    G+  +A   Y    K +        +          K  K  EAI  C
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVXKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295
Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM-DNSRENHNFLEEAKRLLKR 352
           +  L+ +P+ + AL  R + +     Y E + D E   +  +N ++    LE+A+RLLK+
Sbjct: 296 SEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
Query: 353 SE 354
           S+
Sbjct: 356 SQ 357

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 10/71 (14%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRH--TNATQAQKLEQEKLFKEVGEAYGIL 414
           DYY+ILGV++ AS +D+KKAYR+ AL  HPD++    AT+A        FK +G AY +L
Sbjct: 8   DYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA--------FKAIGTAYAVL 59
Query: 415 SDPTKRSRYDR 425
           S+P KR +YD+
Sbjct: 60  SNPEKRKQYDQ 70

>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein Hcg3, A Hypothetical Protein Tmp_locus_21 Length = 82

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           DYY++L V + ASS+ IKKAYRK AL  HPD++       K E E+ FK+V EAY +LSD
Sbjct: 10  DYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE----NKEEAERRFKQVAEAYEVLSD 65
Query: 417 PTKRSRYDR 425
             KR  YDR
Sbjct: 66  AKKRDIYDR 74

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 12/98 (12%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418
           Y +LG+ KNA+SDDIKK+YRK AL +HPD++ +  +A        FKE+  A+ IL+D T
Sbjct: 20  YHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAA-----DKFKEINNAHAILTDAT 74
Query: 419 KRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPG 456
           KR+ YD+        G  G   A  F +    TYF  G
Sbjct: 75  KRNIYDK-------YGSLGLYVAEQFGEENVNTYFVSG 105

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 54/102 (52%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A++ K  GN  +K   Y  A++ Y+EA+   P  A  Y NRAAC   L  +  ALDD   
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
            + LD +F KG IR+  C +A+ +   A+   +   ++DP N
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSN 114

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           GNE F  G    A   Y EA+K D  N    + L  NRA  L K+ ++  A+ DC   + 
Sbjct: 20  GNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAACLTKLMEFQRALDDCDTCIR 75
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338
            D  ++K   R+  C  A+ ++ +     E   ++D S E
Sbjct: 76  LDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY+ILGV+K A   +I+KAY++ A+ +HPDR+    +A     E  FKE+ EAY +L+
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-----EAKFKEIKEAYEVLT 57
Query: 416 DPTKRSRYDR-GEDIMEDSG 434
           D  KR+ YD+ G    E  G
Sbjct: 58  DSQKRAAYDQYGHAAFEQGG 77

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/69 (49%), Positives = 47/69 (68%), Gaps = 8/69 (11%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
           YY +LGV  NA+ +++KKAYRK AL +HPD++ N       E EK FK++ +AY +LSD 
Sbjct: 8   YYDVLGVKPNATQEELKKAYRKLALKYHPDKNPN-------EGEK-FKQISQAYEVLSDA 59
Query: 418 TKRSRYDRG 426
            KR  YD+G
Sbjct: 60  KKRELYDKG 68

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY+ILGV+K A   +I+KAY++ A+ +HPDR+    +A     E  FKE+ EAY +L+
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-----EAKFKEIKEAYEVLT 57
Query: 416 DPTKRSRYDR 425
           D  KR+ YD+
Sbjct: 58  DSQKRAAYDQ 67

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 5/70 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY+ILGV+K A   +I+KAY++ A+ +HPDR+    +A     E  FKE+ EAY +L+
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-----EAKFKEIKEAYEVLT 57
Query: 416 DPTKRSRYDR 425
           D  KR+ YD+
Sbjct: 58  DSQKRAAYDQ 67

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K +GN Q K++ +  A+  Y +AI + P  A Y+ NRAA Y  LG Y  A+ D + 
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
           A+ +DP +SK   R      +L     A +  K   ELDPDN
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           GNE+      + A   Y +A++++      N+    NRA    K+G Y  A+ DC  A+ 
Sbjct: 19  GNEQMKVENFEAAVHFYGKAIELNP----ANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVK 356
            DP Y KA  R      +L ++ E V   +K  ++D   E +      K  LK +E+K
Sbjct: 75  IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY------KSNLKIAELK 126

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 45/74 (60%)
Query: 4  AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
          ++K K +GN     K+YSKA+  Y++A+S+ P    Y  NRAA Y   G +  A +DA+L
Sbjct: 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Query: 64 AVSLDPRFSKGLIR 77
          A  +DP++SK   R
Sbjct: 71 ATVVDPKYSKAWSR 84

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 8/69 (11%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
           YY +LGV  +AS +++KKAYRK AL  HPD++ +  +         FK++ +AY +LSD 
Sbjct: 10  YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQ--------FKQISQAYEVLSDE 61
Query: 418 TKRSRYDRG 426
            KR  YD+G
Sbjct: 62  KKRQIYDQG 70

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 8/67 (11%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418
           Y +LGV+ +A+  ++KK YRK AL +HPD+ T  T+         FKE+ EA+ IL+DP 
Sbjct: 11  YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEK--------FKEISEAFEILNDPQ 62
Query: 419 KRSRYDR 425
           KR  YD+
Sbjct: 63  KREIYDQ 69

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 58.5 bits (140), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 5/68 (7%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           DYY+ILGV +NAS  +IKKAY + A  +HPD + +  +A    +EK F ++ EAY +LSD
Sbjct: 8   DYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKA----KEK-FSQLAEAYEVLSD 62
Query: 417 PTKRSRYD 424
             KR +YD
Sbjct: 63  EVKRKQYD 70

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 3  SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
          SA++ KE GN  +  ++Y +A  CY  AI+  P VA YY NRA CY+ +     AL D +
Sbjct: 3  SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 63 LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK 96
           A+ LD +  K      +C + +     A +NL+
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 96

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 7/101 (6%)
Query: 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
           ++++Y +LGV+K ASS +I++A++K AL  HPD++ N   A        F ++  AY +L
Sbjct: 1   IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAH-----GDFLKINRAYEVL 55
Query: 415 SDPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFD 454
            D   R +YD+ GE  +ED+  GG   +  + ++ F  Y D
Sbjct: 56  KDEDLRKKYDKYGEKGLEDN-QGGQYESWSYYRYDFGIYDD 95

>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 9 Length = 88

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 6/67 (8%)
Query: 358 YYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDP 417
           YY ILGV K+AS   IKKA+ K A+ +HPD++ +       + E  F+E+ EAY  LSD 
Sbjct: 9   YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSP------DAEAKFREIAEAYETLSDA 62
Query: 418 TKRSRYD 424
            +R  YD
Sbjct: 63  NRRKEYD 69

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
           SE+KDYY I+GV        IK AYR+ A  +HPD       +++ + E  FKEV EA+ 
Sbjct: 2   SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD------VSKEPDAEARFKEVAEAWE 55
Query: 413 ILSDPTKRSRYDR 425
           +LSD  +R+ YD+
Sbjct: 56  VLSDEQRRAEYDQ 68

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
           SA++ KE GN  +  ++Y +A  CY  AI+  P VA YY NRA CY+ +     AL D +
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK 96
            A+ LD +  K      +C + +     A +NL+
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQ 101

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           GN  +  G  Q+A + Y +AL++D  N    +   +N     +K G Y +AI     ALE
Sbjct: 16  GNAYYKQGDYQKAIEYYQKALELDPNN----ASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
            DPN  KA  RR   ++  G Y++ + D +K  ++D
Sbjct: 72  LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +++Y +LGV+K ASS +I++A++K AL  HPD++ N   A        F ++  AY +L 
Sbjct: 21  QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAH-----GDFLKINRAYEVLK 75
Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFD 454
           D   R +YD+ GE  +ED+  GG   +  + ++ F  Y D
Sbjct: 76  DEDLRKKYDKYGEKGLEDN-QGGQYESWSYYRYDFGIYDD 114

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 357 DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           D Y++LGV++ AS  DIKKAY+K A   HPD++ +         E  F ++ +AY ILS+
Sbjct: 18  DPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPG------AEDRFIQISKAYEILSN 71
Query: 417 PTKRSRYD 424
             KR+ YD
Sbjct: 72  EEKRTNYD 79

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLH-NRATVLFKMGKYNEAIADCTLAL 297
           GNE F  G    A   YT+AL +DA     +  +LH NRA    K+  Y++A  + + A+
Sbjct: 35  GNELFKCGDYGGALAAYTQALGLDA--TPQDQAVLHRNRAACHLKLEDYDKAETEASKAI 92
Query: 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
           EKD   +KAL RR +    LG+  + V+D ++   ++
Sbjct: 93  EKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A + K  GN  +  K +++A+K Y  AI + PN   +Y N +ACY+  G     ++    
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84
Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98
           A+ + P  SK L+R+   N +LG+   A  +L  L
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 8  KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL 67
          K  GN  ++   Y +A+K Y+EAI   P  A  Y NRAACY  L  +  AL D +  + L
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL 79
Query: 68 DPRFSKGLIRQ 78
          +P F KG  R+
Sbjct: 80 EPTFIKGYTRK 90

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           GNE F  G   +A   YTEA+K + ++    +KL  NRA    K+ ++  A+ DC   ++
Sbjct: 23  GNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALKDCEECIQ 78
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
            +P ++K  +R+     A+  Y + +   +K   +D+S
Sbjct: 79  LEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A + K  GN  +  K +++A+K Y  AI + PN   +Y N +ACY+  G     ++    
Sbjct: 21  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 80
Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98
           A+ + P  SK L+R+   N +LG+   A  +L  L
Sbjct: 81  ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 115

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
           E+KDYY ILGV        IK AYR+ A  +HPD       +++ + E  FK++ EA+ +
Sbjct: 26  ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPD------VSKENDAEAKFKDLAEAWEV 79
Query: 414 LSDPTKRSRYDRGEDIMEDSGMG 436
           L D  +R+ YD+      D G G
Sbjct: 80  LKDEQRRAEYDQLWQHRNDPGFG 102

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRXXXXXXXXXXGNEKFVAG 246
           +A +  G   Y     D A+ ++Q  L+L P  A+A                GN  +  G
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA------------WYNLGNAYYKQG 49
Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
              EA + Y +AL++D R+    ++  +N     +K G Y+EAI     ALE DP   +A
Sbjct: 50  DYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Query: 307 LSRRCKCFHALGQYKECVIDAEKIYKMD 334
                  ++  G Y E +   +K  ++D
Sbjct: 106 WYNLGNAYYKQGDYDEAIEYYQKALELD 133

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 36/71 (50%)
Query: 8  KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL 67
          KE GN    +     AL+CYSEAI + P+    Y NR+A Y   G Y  A +D    V L
Sbjct: 8  KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 68 DPRFSKGLIRQ 78
           P + KG  R+
Sbjct: 68 KPDWGKGYSRK 78

>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like Protein Length = 94

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 350 LKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ-EKLFKEVG 408
           L+++  KD+Y ILG   +A+  D+K+ Y+K  L++HPD+ +    A  +E+  + F E+ 
Sbjct: 10  LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEID 69
Query: 409 EAYGILSDPTKRSRYD 424
           +A+ IL +   + +YD
Sbjct: 70  QAWKILGNEETKKKYD 85

>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4 Length = 155

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQ-EKLFKEVGEAYGIL 414
           KD+Y ILG   +A+  D+K+ Y+K  L++HPD+ +    A  +E+  + F E+ +A+ IL
Sbjct: 10  KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 415 SDPTKRSRYD--RGEDIMEDSG 434
            +   +  YD  R ED + + G
Sbjct: 70  GNEETKREYDLQRCEDDLRNVG 91

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
           G E F       A   YTE +K    DAR  +       NRA  L K+  + EAIADC  
Sbjct: 11  GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-------NRAAALAKLMSFPEAIADCNK 63
Query: 296 ALEKDPNYLKALSRRCKCFHALGQY 320
           A+EKDPN+++A  R+     A+ +Y
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEY 88

>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams- Beuren Syndrome Chromosome Region 18 Protein Length = 99

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418
           Y +LGV   A+   IK AY ++  ++HPDR++ + +A      + F  + +AY +L   T
Sbjct: 20  YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAA-----ERFTRISQAYVVLGSAT 74
Query: 419 KRSRYDRGEDIMEDSGMGG 437
            R +YDRG  ++ D  + G
Sbjct: 75  LRRKYDRG--LLSDEDLRG 91

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
           G E F       A   YTE +K    DAR  +       NRA  L K+  + EAIADC  
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS-------NRAAALAKLMSFPEAIADCNK 198
Query: 296 ALEKDPNYLKALSRRCKCFHALGQY 320
           A+EKDPN+++A  R+     A+ +Y
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEY 223

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           GN  +  G   EA + Y +AL++D  N    ++  +N     +K G Y+EAI     ALE
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDPNN----AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
            DPN  +A       ++  G Y E +   +K  ++D
Sbjct: 72  LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 8  KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL 67
          K+ GN  ++ K+Y  A+K Y+ A+ +  +   +Y N +ACY+ +G     ++ +  A+ L
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 68 DPRFSKGLIRQIKCNIALGDAPTARSNLKAL 98
           P +SK L+R+   N  LG    A  +L  L
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAMFDLSVL 99

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 8   KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY---------------YGNRAACYMMLG 52
           KE G   +K  +Y +AL  Y + +S     +++               + N A C++ L 
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 53  MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
            ++ A++    A+ LD    KGL R+ + ++A+ D   AR++ + + +L P+N A
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265

>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd Length = 111

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 5  EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALD 59
          EK KE GN+ +K   Y +A+ CY + I+  P     Y N+A   + LG YT A+ 
Sbjct: 5  EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 8   KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY---------------YGNRAACYMMLG 52
           KE G   +K  +Y +AL  Y + +S     +++               + N A C++ L 
Sbjct: 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ 210
Query: 53  MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
            ++ A++    A+ LD    KGL R+ + ++A+ D   AR++ + + +L P+N A
Sbjct: 211 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265

>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C Menber 12 Length = 112

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 351 KRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEA 410
           +  + +DYY +LG  + +S + I   ++ RAL  HPD+H    +A      + F+++ +A
Sbjct: 15  RSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAV-----ETFQKLQKA 69
Query: 411 YGILSDPTKRSRYD 424
             IL++   R+RYD
Sbjct: 70  KEILTNEESRARYD 83

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           GN   + + + +A+  Y  A+S+ PN A  +GN A  Y   G+   A+D  + A+ L P 
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 71  FSKGLIRQIKCNIA 84
           F         CN+A
Sbjct: 270 FPDAY-----CNLA 278

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	470
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-119
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-37
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-24
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-36
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-29
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-21
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-32
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-04
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-32
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-28
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-04
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	9e-32
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-25
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	2e-31
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-31
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	5e-25
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	9e-04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-30
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-25
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-30
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-29
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-29
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-05
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-29
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-29
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-26
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-29
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-23
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-07
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-28
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	4e-26
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-28
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-25
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-20
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-07
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	8e-28
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	9e-28
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	2e-27
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	3e-27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-27
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-19
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-06
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	4e-27
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	7e-27
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-26
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-25
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-20
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-20
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-19
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	7e-26
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	8e-26
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	9e-26
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-25
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	3e-25
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	5e-24
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	9e-24
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	1e-23
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	1e-23
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-23
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-15
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-07
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	5e-23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-23
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-20
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-18
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-23
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	6e-05
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	9e-23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-22
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-22
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-22
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	9e-20
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-05
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	7e-22
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-21
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-21
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-20
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-20
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-19
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-20
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-19
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-20
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-19
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-16
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-05
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-19
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	4e-18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-18
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-10
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-18
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-17
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-15
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	9e-07
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	7e-17
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	8e-17
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-16
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-11
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-16
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	6e-16
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	5e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	5e-12
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-07
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-04
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	6e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-15
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-08
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-04
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	3e-14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-08
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-12
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-13
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	6e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	7e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-11
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-07
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	1e-12
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-12
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-12
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-10
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-10
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	8e-10
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-07
2guz_A	71	Mitochondrial import inner membrane translocase su	2e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	5e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-07
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	9e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	8e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	7e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	1e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	6e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	5e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	4e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-04

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  355 bits (913), Expect = e-119
 Identities = 115/428 (26%), Positives = 188/428 (43%), Gaps = 6/428 (1%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
             EKH E G       Q + AL  +  A+   P+    Y  RA  ++ +G    AL D  
Sbjct: 25  DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 84

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL---ETMA 119
             + L   F+   +++    +  G    A  + K + + +P      +    L   + M 
Sbjct: 85  KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144

Query: 120 KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
           +    A  AF + DY  A+ +LD+ ++  V     + ++AEC       ++A     +  
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 204

Query: 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239
                N +A +      Y     +L+++  +  LKL  DH +    YK+ K L    E  
Sbjct: 205 KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA 264

Query: 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299
            E    G+  +A   Y   +K +        +          K  K  EAI  C+  L+ 
Sbjct: 265 EELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324

Query: 300 DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDY 358
           +P+ + AL  R + +     Y E + D E   + + N ++    LE+A+RLLK+S+ +DY
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384

Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPT 418
           YKILGV +NA   +I KAYRK AL  HPD   N  + +K + EK F ++  A  +LSDP 
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN--EEEKKKAEKKFIDIAAAKEVLSDPE 442

Query: 419 KRSRYDRG 426
            R ++D G
Sbjct: 443 MRKKFDDG 450

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 83.2 bits (206), Expect = 2e-17
 Identities = 31/147 (21%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 214 KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLL 273
               D       ++    ++   E G +   AG+  +A   +  A+  D      N    
Sbjct: 8   SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD----NYIAY 63

Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
           + RATV   MGK   A+ D T  ++   ++  A  +R       G+  E   D +K+ K 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 334 DNSRENHNFLEEAKRLLKRSEVKDYYK 360
           + S   +   E   +L+K  E++    
Sbjct: 124 NPS--ENEEKEAQSQLIKSDEMQRLRS 148

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  275 bits (706), Expect = 3e-89
 Identities = 81/355 (22%), Positives = 144/355 (40%), Gaps = 4/355 (1%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
            EKH E G       Q + AL  +  A+   P+    Y  RA  ++ +G    AL D   
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL---ETMAK 120
            ++L   F+   +++    +  G    A  + K + + +P      +    L   + M +
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA 180
               A  AF+  DY  A+ +LD+ ++  V     + ++AEC       ++A     +   
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 181 TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
               N +A +      Y     +L+++  +  LKL  DH +    YK+ K L    E   
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242

Query: 241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300
           E    G+  +A   Y   +K +        +          K  K  EAI  C+  L+ +
Sbjct: 243 ELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME 302

Query: 301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE 354
           P+ + AL  R + +     Y E + D E   + + N ++    LE+A+RLLK+S+
Sbjct: 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  107 bits (269), Expect = 8e-26
 Identities = 45/241 (18%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
             ++ +      +    Y+ A+    + + VC   A     RA C++  G    A+ D K
Sbjct: 119 EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKN 121
            A  L    ++   +       LGD   + S + + L +LD D+       K ++ + K 
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKL 237

Query: 122 FEGASKAFEANDYRTAMFYLDRAM--DQGVASKTYKL--MKAECLAHLNRLQEAQEIANS 177
            E A +      Y  A    +  M  +  VA  T +       C +   +  EA  I + 
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297

Query: 178 ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237
           +L  +  N +A+  R      ++  D A+  ++   +   +  + +E  ++A+ L  + +
Sbjct: 298 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ 357

Query: 238 E 238
           +
Sbjct: 358 K 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 34/196 (17%)

Query: 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244
           + +     G  L    ++  A++ F   +   PD+  A   Y+RA +  A          
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAY--YRRATVFLAM--------- 50

Query: 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL 304
            GK++ A    T+ + +              R  +L K GK +EA  D    L+ +P+  
Sbjct: 51  -GKSKAALPDLTKVIALKMDFTAA----RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

Query: 305 KALS---------------RRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKR 348
           +                   +         Y   +   +KI ++     E      E   
Sbjct: 106 EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFI 165

Query: 349 LLKRSE--VKDYYKIL 362
                   + D     
Sbjct: 166 KEGEPRKAISDLKAAS 181

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 9/147 (6%)

Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
           + +        L   G+  +A++    A++ DP+   A  RR   F A+G+ K  + D  
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 329 KIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYYKILGVTKNASSDDIKKAYRKRALVHH 385
           K+  +  +                + +    D+ K+L      S+   ++     + +  
Sbjct: 62  KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL-----KSNPSEQEEKEAESQLVK 116

Query: 386 PDRHTNA-TQAQKLEQEKLFKEVGEAY 411
            D      +QA        +       
Sbjct: 117 ADEMQRLRSQALDAFDGADYTAAITFL 143

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  141 bits (356), Expect = 8e-37
 Identities = 56/328 (17%), Positives = 109/328 (33%), Gaps = 19/328 (5%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A + K  GN  +  K +++A+K Y  AI + PN   +Y N +ACY+  G     ++    
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A+ + P  SK L+R+   N +LG+   A  +L  L      + A  +         +  +
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMK 144

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
             ++    ++ R +                   ++   +   +    A  + +  L    
Sbjct: 145 VLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204

Query: 184 QNPDAVFVRGLCLYYD--DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
              D  ++    L     D     ++   +   L  + A             A    G  
Sbjct: 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA------------LALCYTGIF 252

Query: 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
            F+     +A  +  E++      ++         A  L       E       A++ +P
Sbjct: 253 HFLKNNLLDAQVLLQESIN-----LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP 307

Query: 302 NYLKALSRRCKCFHALGQYKECVIDAEK 329
            Y      R + +  L  YK    D +K
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  103 bits (258), Expect = 9e-24
 Identities = 48/353 (13%), Positives = 105/353 (29%), Gaps = 39/353 (11%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
                      K ++  ++A+ + P+ +     RA+    LG +T A+ D    +SL+  
Sbjct: 66  SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGD 124

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
           F       I+  +       A   L      D    +    S    ++A  F       E
Sbjct: 125 FDGA---SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT--SLASFFGIFDSHLE 179

Query: 131 ANDYRTAMFYLDRAMDQGVASKT--------YKLMKAECLAHLNRLQEAQEIANSILATD 182
            +   T+  Y         A +         Y +         +                
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLR 239

Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA----------------KAKETY 226
           +    A+   G+  +  + +  A    Q  + L P                   +  + +
Sbjct: 240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFF 299

Query: 227 KRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
           ++A  L  +        G   F+    + A + + +A  ++  N+          A +L+
Sbjct: 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP----YIQLACLLY 355

Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
           K GK+ E+ A       K P   +  +   +     G +   +   +   +++
Sbjct: 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 91.7 bits (228), Expect = 5e-20
 Identities = 50/395 (12%), Positives = 98/395 (24%), Gaps = 81/395 (20%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
                 +         Y   L   +    +  N A         + +      A    + 
Sbjct: 209 EGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           +++L P             +AL       ++ +  QE            KA++   +   
Sbjct: 269 SINLHPTP------NSYIFLAL-----TLADKENSQE------FFKFFQKAVDLNPEY-- 309

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
                           Y  R                +    L   + A+E      + + 
Sbjct: 310 -------------PPTYYHRG---------------QMYFILQDYKNAKEDFQKAQSLNP 341

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           +N          LY   K   +   F       P   +       A++L  +        
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVP--TFFAEILTDR-------- 391

Query: 244 VAGKNQEAFDIYTEALKID------------ARNININSKLLHNRATVLFKMGKYNEAIA 291
             G    A   Y  A +++                        ++        K+N AI 
Sbjct: 392 --GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449

Query: 292 DCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK--IYKMDNSRENHNF-LEEAKR 348
             T A E DP   +A     +    + +  E +   E   I       +       EA +
Sbjct: 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAK 509

Query: 349 LLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALV 383
           + KR  ++    I    +   +      YR + ++
Sbjct: 510 IQKR--LRADPIISAKMELTLA-----RYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 85.2 bits (211), Expect = 8e-18
 Identities = 44/317 (13%), Positives = 88/317 (27%), Gaps = 28/317 (8%)

Query: 2   LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMY 54
           L       D          +K+   Y   +S          N A         + +    
Sbjct: 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL 259

Query: 55  TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114
             A    + +++L P      I          ++       +   +L+P+ P        
Sbjct: 260 LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYP------PT 312

Query: 115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI 174
                + +      F   DY+ A     +A      +    +  A  L    +  E++  
Sbjct: 313 YYHRGQMY------FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF 366

Query: 175 ANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK----ETYKRAK 230
            N         P+        L      D A+  + +  +L     K          +A 
Sbjct: 367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426

Query: 231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAI 290
           +L  +  +   +    K   A  + T+A ++D R+           A +  +M K +EAI
Sbjct: 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA----KIGLAQLKLQMEKIDEAI 482

Query: 291 ADCTLALEKDPNYLKAL 307
                +        + L
Sbjct: 483 ELFEDSAILARTMDEKL 499

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 35/175 (20%), Positives = 58/175 (33%), Gaps = 13/175 (7%)

Query: 201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK 260
                      L  L+P   +A             K  GN  F A    EA   Y  A++
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAY--------AVQLKNRGNHFFTAKNFNEAIKYYQYAIE 53

Query: 261 IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY 320
           +D            N +      G   + I   T ALE  P++ KAL RR     +LG +
Sbjct: 54  LDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109

Query: 321 KECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKK 375
            + + D   +    +  +  +     +R L +  +K   + L   +   S  +  
Sbjct: 110 TDAMFDLSVLSLNGDF-DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 18/89 (20%), Positives = 31/89 (34%)

Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
           G +        +   +        +  L NR    F    +NEAI     A+E DPN   
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 306 ALSRRCKCFHALGQYKECVIDAEKIYKMD 334
             S    C+ + G  ++ +    K  ++ 
Sbjct: 61  FYSNISACYISTGDLEKVIEFTTKALEIK 89

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 15/125 (12%), Positives = 27/125 (21%), Gaps = 18/125 (14%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAAC--------------- 47
             E              +  A+K Y  A  +       +                     
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDP 436

Query: 48  -YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDN 105
             +    +  A+     A  LDPR  +  I   +  + +     A      +   L    
Sbjct: 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA-ILARTM 495

Query: 106 PAIAQ 110
               Q
Sbjct: 496 DEKLQ 500

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  139 bits (352), Expect = 2e-36
 Identities = 62/369 (16%), Positives = 117/369 (31%), Gaps = 19/369 (5%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A   K+ GN  ++ K+Y  A+K Y+ A+ +  +   +Y N +ACY+ +G     ++ +  
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A+ L P +SK L+R+   N  LG    A  +L  L      N A  +         +   
Sbjct: 65  ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMS 124

Query: 124 GASKAFEAND--YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
              + F   D    T      +   +    +          +     +     AN   + 
Sbjct: 125 KLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESN 184

Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK-----K 236
           +        +  L     +  D A   F    K A    +  +     + LK K     +
Sbjct: 185 EADKELMNGLSNLYKRSPESYDKADESFT---KAARLFEEQLDKNNEDEKLKEKLAISLE 241

Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
             G  KF+      A +   +A+++               A ++       E       A
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFP-----RVNSYIYMALIMADRNDSTEYYNYFDKA 296

Query: 297 LEKDPNYLKALSRRCKCFHALGQYKECVIDAEK-IYKMDNSRENHNFLEEAKRLLKRSE- 354
           L+ D N       R +    L  Y +   D +K       +   +  L        + + 
Sbjct: 297 LKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDD 356

Query: 355 -VKDYYKIL 362
               + +  
Sbjct: 357 CETLFSEAK 365

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  120 bits (302), Expect = 2e-29
 Identities = 49/371 (13%), Positives = 119/371 (32%), Gaps = 36/371 (9%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD---AKLAVSL 67
                 +    K ++  ++A+ + P+ +     RA+    LG +  A+ D     L    
Sbjct: 46  SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDF 105

Query: 68  DPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEGAS 126
           +    + ++ +     A+        ++  A       +   A+E K  +    +    +
Sbjct: 106 NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165

Query: 127 KAFEANDYRTAMFYLDRAMDQ------------GVASKTYKLMKAECLAHLNRLQEAQEI 174
             F            D + +               + ++Y              +E  + 
Sbjct: 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDK 225

Query: 175 ANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234
            N      ++   ++   G+  +  +    A    +  ++L P           A ++  
Sbjct: 226 NNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR---VNSYIYMALIMAD 282

Query: 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
           +            + E ++ + +ALK+D+ N    S + ++R  + F +  Y++A  D  
Sbjct: 283 R----------NDSTEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQNYDQAGKDFD 328

Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK-IYKMDNSRENHNFLEEAKRLLKRS 353
            A E DP  +    +     +   ++ +C     +   K   + E  NF  E        
Sbjct: 329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388

Query: 354 E--VKDYYKIL 362
           +  +K Y   +
Sbjct: 389 DKALKQYDLAI 399

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 97.1 bits (242), Expect = 9e-22
 Identities = 52/408 (12%), Positives = 109/408 (26%), Gaps = 58/408 (14%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYG-------------NRAACYM 49
           S E   E    +  + +  +       A +    ++                    A + 
Sbjct: 109 SIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168

Query: 50  MLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA 109
            +        +   +   D     GL    K +    D        KA +  +     + 
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT-KAARLFEE---QLD 224

Query: 110 QESKALETMAKNFEG----ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL 165
           + ++  +   K            F  ND   A   + +A++      +Y  M A  +A  
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM-ALIMADR 283

Query: 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA----- 220
           N   E     +  L  D  N    + RG   +     D A   F    +L P++      
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343

Query: 221 ------------KAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKIDA 263
                         +  +  AK    +  E                +A   Y  A++++ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 264 RNININSKLLHNRATVLFK---------MGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314
           +       +    A ++ K         +  + EA      A + DP   +A     +  
Sbjct: 404 KL----DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459

Query: 315 HALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDYYKI 361
                  E +   E+   +     E    +  A+    +  ++    +
Sbjct: 460 LQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVL 507

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 95.6 bits (238), Expect = 3e-21
 Identities = 45/313 (14%), Positives = 92/313 (29%), Gaps = 27/313 (8%)

Query: 2   LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMY 54
           LS    +   +     + ++KA + + E +            +A    +      +    
Sbjct: 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253

Query: 55  TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114
             A +D K A+ L PR +   I          D+    +      +LD +N         
Sbjct: 254 LGAHEDIKKAIELFPRVN-SYIYMALIMADRNDSTEYYNYFDKALKLDSNNS------SV 306

Query: 115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI 174
                +        F   +Y  A    D+A +    +    +  A      N+  + + +
Sbjct: 307 YYHRGQMN------FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL 360

Query: 175 ANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234
            +       + P+        L   +  D A+  + L ++L          Y     L  
Sbjct: 361 FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI---YVGIAPLVG 417

Query: 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
           K              EA ++  +A K+D R+           A +  +    +EAI    
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQA----KIGLAQMKLQQEDIDEAITLFE 473

Query: 295 LALEKDPNYLKAL 307
            + +      + L
Sbjct: 474 ESADLARTMEEKL 486

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 83.3 bits (206), Expect = 3e-17
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
           K++GN+ F   K  +A   Y  AL++       +     N +     +G   + +   T 
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALELKE-----DPVFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 296 ALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEV 355
           ALE  P+Y K L RR      LG++ + + D   +    +  +        +R L +  +
Sbjct: 65  ALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI-EPMLERNLNKQAM 123

Query: 356 KDYYKILGVTKNASSDDIKKA 376
               +  G    A++   + +
Sbjct: 124 SKLKEKFGDIDTATATPTELS 144

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.4 bits (196), Expect = 5e-16
 Identities = 37/245 (15%), Positives = 74/245 (30%), Gaps = 13/245 (5%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
                     ++    + +A+ +  N ++ Y +R     +L  Y  A  D   A  LDP 
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
                I+               +     +   P+ P +      + T   +F+ A K ++
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYD 396

Query: 131 -----ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN 185
                 N        +        A    K         +    EA  +       D ++
Sbjct: 397 LAIELENKLDGIYVGI--------APLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448

Query: 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA 245
             A           + +D A+  F+    LA    +  +    A+  K ++   ++  +A
Sbjct: 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVLA 508

Query: 246 GKNQE 250
            K QE
Sbjct: 509 KKIQE 513

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  119 bits (300), Expect = 4e-32
 Identities = 43/140 (30%), Positives = 67/140 (47%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K   N  +K K Y  A+K YS+AI + P+ A YYGNR+  Y+    Y YAL DA  
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A+ LD ++ KG  R+   N+ALG    A  + + + ++ P +     + +    + K   
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132

Query: 124 GASKAFEANDYRTAMFYLDR 143
                      R+ +  LD 
Sbjct: 133 FERAIAGDEHKRSVVDSLDI 152

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  109 bits (274), Expect = 2e-28
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 22/180 (12%)

Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA 277
           D   A    KRA+ LK    + N+ F A   + A   Y++A++++  N    +    NR+
Sbjct: 2   DEPPADGALKRAEELK---TQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRS 54

Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NS 336
               +   Y  A+ D T A+E D  Y+K   RR     ALG+++  + D E + K+  + 
Sbjct: 55  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114

Query: 337 RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQ 396
           ++     +E  +++K              + A    I     KR++V   D  +   + +
Sbjct: 115 KDAKMKYQECNKIVK--------------QKAFERAIAGDEHKRSVVDSLDIESMTIEDE 160

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 4/141 (2%)

Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
             F+A DY  A+ +  +A++   ++  Y   ++           A   A   +  DK+  
Sbjct: 22  DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI 81

Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
              + R        K   A+  ++ ++K+ P    AK  Y+     K  K++  E+  A 
Sbjct: 82  KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN--KIVKQKAFER--AI 137

Query: 247 KNQEAFDIYTEALKIDARNIN 267
              E      ++L I++  I 
Sbjct: 138 AGDEHKRSVVDSLDIESMTIE 158

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  118 bits (298), Expect = 4e-32
 Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)

Query: 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275
            P   + +     A  ++  ++EGNE F  G    A   YT+AL +DA   +  + L  N
Sbjct: 12  GPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-QAVLHRN 70

Query: 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDN 335
           RA    K+  Y++A  + + A+EKD   +KAL RR +    LG+  + V+D ++   ++ 
Sbjct: 71  RAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130

Query: 336 SRENHNFLEEAKRLLKRS 353
              N  F E  + +   S
Sbjct: 131 K--NKVFQEALRNISGPS 146

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  108 bits (273), Expect = 2e-28
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 3/117 (2%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCP---NVAAYYGNRAACYMMLGMYTYALD 59
           S E+ +++GN  +K   Y  AL  Y++A+ +     + A  + NRAAC++ L  Y  A  
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86

Query: 60  DAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
           +A  A+  D    K L R+ +    LG    A  +L+    L+P N    +  + + 
Sbjct: 87  EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 3/141 (2%)

Query: 91  ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA 150
             S    +    P  P     +    ++ +  +  ++ F+  DY  A+    +A+     
Sbjct: 1   GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT 60

Query: 151 SK---TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN 207
            +        +A C   L    +A+  A+  +  D  +  A++ R   L    ++D AV 
Sbjct: 61  PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVL 120

Query: 208 HFQLLLKLAPDHAKAKETYKR 228
             Q  + L P +   +E  + 
Sbjct: 121 DLQRCVSLEPKNKVFQEALRN 141

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  118 bits (298), Expect = 9e-32
 Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 1/129 (0%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           ++K K +GN     K+YSKA+  Y++A+S+ P    Y  NRAA Y   G +  A +DA+L
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A  +DP++SK   R       + D   A+   +   E + +        + LET  +  E
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG-GSDAMKRGLETTKRKIE 129

Query: 124 GASKAFEAN 132
            A++  E  
Sbjct: 130 EANRGAEPP 138

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 99.8 bits (249), Expect = 6e-25
 Identities = 42/162 (25%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
             K EGN      +  +A D+YT+AL I   N       L NRA      G++ +A  D 
Sbjct: 13  KLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAAEDA 68

Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF---LEEAKRLL 350
            LA   DP Y KA SR       +  YK      EK  + + +  +      LE  KR +
Sbjct: 69  ELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKI 128

Query: 351 KRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA 392
           + +          V   A +         R     PD  + A
Sbjct: 129 EEANRGAEPPADDVDDAAGAS--------RGAGGMPDLSSLA 162

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score =  117 bits (294), Expect = 2e-31
 Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 350 LKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRH-TNATQAQKLEQEKLFKEVG 408
           +++   KD+Y ILG   +A+  D+K+ Y+K  L++HPD+  T+       E  + F E+ 
Sbjct: 4   VEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEID 63

Query: 409 EAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFE----QHMFQTYFDPGCR 458
           +A+ IL +   +  YD      +   +G        E         +++   CR
Sbjct: 64  QAWKILGNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLS-CR 116

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  115 bits (290), Expect = 4e-31
 Identities = 36/113 (31%), Positives = 56/113 (49%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A++ K  GN  +K   Y  A++ Y+EA+   P  A  Y NRAAC   L  +  ALDD   
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
            + LD +F KG IR+  C +A+ +   A+   +   ++DP N    +  +   
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  107 bits (270), Expect = 2e-28
 Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 220 AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV 279
           + A+  Y   +L + +K +GNE F  G    A   Y EA+K D  N    + L  NRA  
Sbjct: 1   SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN----AILYSNRAAC 56

Query: 280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRE 338
           L K+ ++  A+ DC   +  D  ++K   R+  C  A+ ++ +     E   ++D ++ E
Sbjct: 57  LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116

Query: 339 NHNFLEEAKR 348
               +    R
Sbjct: 117 AREGVRNCLR 126

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 9/126 (7%)

Query: 105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH 164
           NP +AQE K         +G ++ F+  DY TAM + + A+ +   +      +A CL  
Sbjct: 9   NPELAQEEKN--------KG-NEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK 59

Query: 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224
           L   Q A +  ++ +  D +       +  CL    +   A   ++  L++ P + +A+E
Sbjct: 60  LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119

Query: 225 TYKRAK 230
             +   
Sbjct: 120 GVRNCL 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  114 bits (288), Expect = 7e-31
 Identities = 33/113 (29%), Positives = 51/113 (45%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             + KE GN    +     AL+CYSEAI + P+    Y NR+A Y   G Y  A +D   
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
            V L P + KG  R+      L     A+   +   + + +NP + +  + +E
Sbjct: 64  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 98.4 bits (246), Expect = 5e-25
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%)

Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
             KE+GN+    G   +A   Y+EA+K+D  N      L  NR+    K G Y +A  D 
Sbjct: 6   ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKR 348
              ++  P++ K  SR+      L +++E     E+  K + N+ +    L+  + 
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 14/104 (13%), Positives = 34/104 (32%)

Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
           KA    +   A+     A+     +      ++   A     Q+A E     +       
Sbjct: 13  KALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72

Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230
                +   L + ++ + A   ++  LK   ++ + KE  +  +
Sbjct: 73  KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  113 bits (286), Expect = 2e-30
 Identities = 37/118 (31%), Positives = 51/118 (43%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A   K  GN  ++   Y +A+K Y+EAI   P  A  Y NRAACY  L  +  AL D + 
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121
            + L+P F KG  R+     A+ D   A    +   +LD      A   +       N
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 99.2 bits (248), Expect = 4e-25
 Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 219 HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT 278
           H     ++    L    K +GNE F  G   +A   YTEA+K + ++    +KL  NRA 
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAA 58

Query: 279 VLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338
              K+ ++  A+ DC   ++ +P ++K  +R+     A+  Y + +   +K   +D+S  
Sbjct: 59  CYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS-- 116

Query: 339 NHNFLEEAKRLLKRSEVKDY 358
                +EA    +R  +  Y
Sbjct: 117 ----CKEAADGYQRCMMAQY 132

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  111 bits (280), Expect = 9e-30
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
            AE+ + +G   +    +  A+K Y+E I   P  A  Y NRAA    L  +  A+ D  
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
            A+  DP F +  IR+    IA+ +  +A   L A +  D         ++ ++ +  
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA-EVNNGSSAREIDQLYY 119

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  107 bits (270), Expect = 2e-28
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 4/125 (3%)

Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
             + EG E F       A   YTE +K    +    ++   NRA  L K+  + EAIADC
Sbjct: 6   EARLEGKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSNRAAALAKLMSFPEAIADC 61

Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRS 353
             A+EKDPN+++A  R+     A+ +Y   +   +     D    N +   E  +L  ++
Sbjct: 62  NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121

Query: 354 EVKDY 358
             + +
Sbjct: 122 SQQRF 126

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  112 bits (281), Expect = 1e-29
 Identities = 34/109 (31%), Positives = 53/109 (48%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
           SA++ KE GN  +  ++Y +A  CY  AI+  P VA YY NRA CY+ +     AL D +
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111
            A+ LD +  K      +C + +     A +NL+    L  +      +
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  111 bits (279), Expect = 2e-29
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK 285
           + ++   +  KE+GN  FV  K  EA   Y  A+  +       +    NRA    KM +
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQ 58

Query: 286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEE 345
             +A+ADC  ALE D   +KA     +C   +  Y E + + ++ Y +    +  NF ++
Sbjct: 59  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDD 117

Query: 346 AKRLLKRSEVKDYYKI 361
               L+ ++ K +  I
Sbjct: 118 IPSALRIAKKKRWNSI 133

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 12/70 (17%), Positives = 25/70 (35%)

Query: 16  KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGL 75
           K++Q  +AL     A+ +       +     C + +  Y  A+ + + A SL        
Sbjct: 55  KMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 114

Query: 76  IRQIKCNIAL 85
              I   + +
Sbjct: 115 GDDIPSALRI 124

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score =  117 bits (296), Expect = 1e-29
 Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 346 AKRLLKRS---EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEK 402
            + L  +S   E+KDYY ILGV        IK AYR+ A  +HPD         K     
Sbjct: 15  TENLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAK----- 69

Query: 403 LFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGA 441
            FK++ EA+ +L D  +R+ YD+      D G G     
Sbjct: 70  -FKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQT 107

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score =  110 bits (276), Expect = 2e-29
 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
             YY+IL V ++AS+DDIKKAYR++AL  HPD++ +     K   EK FKEV EAY +LS
Sbjct: 2   ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPD----NKEFAEKKFKEVAEAYEVLS 57

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFDP 455
           D  KR  YDR G + +  +G G             + +   
Sbjct: 58  DKHKREIYDRYGREGLTGTGTGPSRAEAGSGGPGLEHHHHH 98

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score =  112 bits (282), Expect = 5e-29
 Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
           ++++Y +LGV+K ASS +I++A++K AL  HPD++ N   A        F ++  AY +L
Sbjct: 1   IQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNA-----HGDFLKINRAYEVL 55

Query: 415 SDPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGSNVRFQYY 469
            D   R +YD+ GE  +ED+  G +   + +         DP              
Sbjct: 56  KDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAV 111

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  109 bits (275), Expect = 5e-29
 Identities = 41/117 (35%), Positives = 58/117 (49%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K +GN Q K++ +  A+  Y +AI + P  A Y+ NRAA Y  LG Y  A+ D + 
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
           A+ +DP +SK   R      +L     A +  K   ELDPDN       K  E   +
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  101 bits (255), Expect = 4e-26
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
             K EGNE+      + A   Y +A++++  N    +    NRA    K+G Y  A+ DC
Sbjct: 14  RLKTEGNEQMKVENFEAAVHFYGKAIELNPAN----AVYFCNRAAAYSKLGNYAGAVQDC 69

Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKR 352
             A+  DP Y KA  R      +L ++ E V   +K  ++D ++    + L+ A+  L+ 
Sbjct: 70  ERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

Query: 353 S 353
           +
Sbjct: 130 A 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  113 bits (285), Expect = 7e-29
 Identities = 54/307 (17%), Positives = 96/307 (31%), Gaps = 64/307 (20%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A+K K +GN  YK +Q+ +A++ Y++A  +  ++     NRAA     G Y  A+     
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLN-NRAAAEYEKGEYETAISTLND 63

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           AV              K    +G+A     +LK   E    +                  
Sbjct: 64  AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--------------- 108

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
                     +R                       A+ L  L   ++  + A +    + 
Sbjct: 109 ----------HR----------------------TADILTKLRNAEKELKKAEAEAYVNP 136

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           +  +   + G   +       AV  +  ++K AP+ A+      RA  L           
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGY--SNRAAALAKL-------- 186

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
                 EA     +A++ D   +    +    +AT    + +Y  A+     A  KD   
Sbjct: 187 --MSFPEAIADCNKAIEKDPNFV----RAYIRKATAQIAVKEYASALETLDAARTKDAEV 240

Query: 304 LKALSRR 310
               S R
Sbjct: 241 NNGSSAR 247

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 98.8 bits (247), Expect = 1e-23
 Identities = 39/219 (17%), Positives = 70/219 (31%), Gaps = 26/219 (11%)

Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217
           +A         + A    N  +   ++      V              +   +  ++   
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 218 DHA----------------KAKETYKRAKLLK-----AKKEEGNEKFVAGKNQEAFDIYT 256
                              K  +  +    +        + EG E F       A   YT
Sbjct: 104 KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163

Query: 257 EALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316
           E +K    +    ++   NRA  L K+  + EAIADC  A+EKDPN+++A  R+     A
Sbjct: 164 EMIKRAPED----ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 219

Query: 317 LGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE 354
           + +Y   +   +     D       +  E  +   K S+
Sbjct: 220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK-IY 331
                   +K  +++EAI     A E   +    L+ R    +  G+Y+  +      + 
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAISTLNDAVE 66

Query: 332 KMDNSRENHNFLEEAKRLLKRSE--VKDYYK 360
           +    R ++  + ++   +  +   + D  K
Sbjct: 67  QGREMRADYKVISKSFARIGNAYHKLGDLKK 97

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  111 bits (278), Expect = 7e-28
 Identities = 34/109 (31%), Positives = 53/109 (48%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
           SA++ KE GN  +  ++Y +A  CY  AI+  P VA YY NRA CY+ +     AL D +
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE 111
            A+ LD +  K      +C + +     A +NL+    L  +      +
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  106 bits (265), Expect = 4e-26
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 7/188 (3%)

Query: 233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD 292
           +  KE+GN  FV  K  EA   Y  A+  +       +    NRA    KM +  +A+AD
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV----AVYYTNRALCYLKMQQPEQALAD 60

Query: 293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKR 352
           C  ALE D   +KA     +C   +  Y E + + ++ Y +    +  NF ++    L+ 
Sbjct: 61  CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI 119

Query: 353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYG 412
           ++ K +  I    +    +    +Y  R +    +R     Q      E       +   
Sbjct: 120 AKKKRWNSI--EERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC 177

Query: 413 ILSDPTKR 420
           I +   K 
Sbjct: 178 IEAKHDKY 185

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 32/179 (17%), Positives = 58/179 (32%), Gaps = 1/179 (0%)

Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
           + F    Y  A     RA+ +      Y   +A C   + + ++A       L  D Q+ 
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
            A F  G C    +  D A+ + Q    LA +          + L  AKK+  N      
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 132

Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
            +QE+ ++++   ++ A       +            G      A      +K    + 
Sbjct: 133 IHQES-ELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMD 190

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  113 bits (285), Expect = 7e-28
 Identities = 60/322 (18%), Positives = 99/322 (30%), Gaps = 66/322 (20%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
            +  ++ ++  ++    + AI   P +A  Y N    Y   G    A++  + A+ L P 
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
           F  G        I L  A      L A  +++    A+     AL+     +        
Sbjct: 100 FIDGY-------INLAAA------LVAAGDME---GAVQAYVSALQYNPDLYC------- 136

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
                      D                   L  L RL+EA+      + T      A  
Sbjct: 137 --------VRSDLGN---------------LLKALGRLEEAKACYLKAIETQPNFAVAWS 173

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
             G       ++ LA++HF+  + L P+   A        +LK                 
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY--INLGNVLKEA----------RIFDR 221

Query: 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310
           A   Y  AL +   +  +      N A V ++ G  + AI     A+E  P++  A    
Sbjct: 222 AVAAYLRALSLSPNHAVV----HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277

Query: 311 CKCFHALGQYKECVIDAEKIYK 332
                  G   E    AE  Y 
Sbjct: 278 ANALKEKGSVAE----AEDCYN 295

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  104 bits (263), Expect = 6e-25
 Identities = 40/322 (12%), Positives = 86/322 (26%), Gaps = 66/322 (20%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
            + +Y+   +  A +   +     P+        ++ +        +   + LA+  +P 
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
            ++            G    A  + +    L PD                          
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF------------------------- 100

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
                    Y++ A                 L     ++ A +   S L  +        
Sbjct: 101 ------IDGYINLAA---------------ALVAAGDMEGAVQAYVSALQYNPDLYCVRS 139

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
             G  L    +++ A   +   ++  P+ A A        +  A+          G+   
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAW--SNLGCVFNAQ----------GEIWL 187

Query: 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310
           A   + +A+ +D            N   VL +   ++ A+A    AL   PN+       
Sbjct: 188 AIHHFEKAVTLDPN----FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

Query: 311 CKCFHALGQYKECVIDAEKIYK 332
              ++  G        A   Y+
Sbjct: 244 ACVYYEQGLIDL----AIDTYR 261

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  103 bits (258), Expect = 3e-24
 Identities = 62/308 (20%), Positives = 98/308 (31%), Gaps = 62/308 (20%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           GN    L +  +A  CY +AI   PN A  + N    +   G    A+   + AV+LDP 
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
           F    I        LG+       LK  +  D    A+A   +AL               
Sbjct: 202 FLDAYIN-------LGNV------LKEARIFDR---AVAAYLRALSLSP----------- 234

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
             ++      L                 A        +  A +     +      PDA  
Sbjct: 235 --NHAVVHGNL-----------------ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
                L     +  A + +   L+L P HA +      A + + +          G  +E
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSL--NNLANIKREQ----------GNIEE 323

Query: 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR 310
           A  +Y +AL++             N A+VL + GK  EA+     A+   P +  A S  
Sbjct: 324 AVRLYRKALEVFPEFAAA----HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 311 CKCFHALG 318
                 + 
Sbjct: 380 GNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.9 bits (224), Expect = 8e-20
 Identities = 33/177 (18%), Positives = 61/177 (34%), Gaps = 20/177 (11%)

Query: 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215
           +  A         + A+     +   +  N   + +     +   ++D + +   L +K 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN 275
            P  A+A        + K +          G+ QEA + Y  AL++    I+       N
Sbjct: 63  NPLLAEA--YSNLGNVYKER----------GQLQEAIEHYRHALRLKPDFIDG----YIN 106

Query: 276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
            A  L   G    A+     AL+ +P+     S       ALG+ +E    A+  Y 
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE----AKACYL 159

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 82.6 bits (205), Expect = 3e-17
 Identities = 44/292 (15%), Positives = 68/292 (23%), Gaps = 66/292 (22%)

Query: 41  YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE 100
               A      G +  A          +P  +  L+     +        +        +
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 101 LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAE 160
            +P                                 A  Y +                  
Sbjct: 62  QNPLL-------------------------------AEAYSNLGN--------------- 75

Query: 161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220
                 +LQEA E     L       D        L     M+ AV  +   L+  PD  
Sbjct: 76  VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135

Query: 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL 280
             +       LLKA           G+ +EA   Y +A++         +    N   V 
Sbjct: 136 CVR--SDLGNLLKAL----------GRLEEAKACYLKAIETQPN----FAVAWSNLGCVF 179

Query: 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
              G+   AI     A+  DPN+L A             +      A   Y 
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDR----AVAAYL 227

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.6 bits (153), Expect = 7e-11
 Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
            + ++ AG  + A     +  + +  N  +    L   +++ F+  + + +    TLA++
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEPDNTGV----LLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--V 355
           ++P   +A S     +   GQ +E +       ++  +  + +  L  A       E  V
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 356 KDYYKIL 362
           + Y   L
Sbjct: 122 QAYVSAL 128

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 11/93 (11%), Positives = 27/93 (29%), Gaps = 3/93 (3%)

Query: 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
               A   ++ G +  A   C     ++P+    L           +       +    K
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 333 MD-NSRENHNFLEEAKRLLKRSE--VKDYYKIL 362
            +    E ++ L    +   + +  ++ Y   L
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score =  105 bits (263), Expect = 8e-28
 Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 345 EAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRH-TNATQAQKLEQEKL 403
            +   L+++  KD+Y ILG   +A+  D+K+ Y+K  L++HPD+   +       E  + 
Sbjct: 5   SSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQK 64

Query: 404 FKEVGEAYGILSDPTKRSRYDR 425
           F E+ +A+ IL +   + +YD 
Sbjct: 65  FIEIDQAWKILGNEETKKKYDL 86

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score =  108 bits (270), Expect = 9e-28
 Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 348 RLLKRSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFK 405
           ++L R E      +LG+ ++A  +   ++KAY K+    HPD+  +         E+  K
Sbjct: 3   KVLNREESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMK 53

Query: 406 EVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPGCRARGS 462
           ++   Y  + D  K +         + + +   +     +    + +  P C  + S
Sbjct: 54  KMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNPGVDAIYCKQW--PECVKKMS 108

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score =  104 bits (262), Expect = 2e-27
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 345 EAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLF 404
           +A    +  + +DYY +LG  + +S + I   ++ RAL  HPD+H    +A      + F
Sbjct: 9   DAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKA-----VETF 63

Query: 405 KEVGEAYGILSDPTKRSRYDR-GEDIMEDSGMGGHAGANLFEQ 446
           +++ +A  IL++   R+RYD      M        A  +  + 
Sbjct: 64  QKLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEALNDSVKT 106

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score =  104 bits (261), Expect = 3e-27
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 6/88 (6%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +  Y +LG+ KNA+SDDIKK+YRK AL +HPD++ +  +A        FKE+  A+ IL+
Sbjct: 17  ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEA-----ADKFKEINNAHAILT 71

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGAN 442
           D TKR+ YD+ G   +  +   G    N
Sbjct: 72  DATKRNIYDKYGSLGLYVAEQFGEENVN 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  104 bits (261), Expect = 3e-27
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
             EK KE GN+ +K   Y +A+ CY + I+  P     Y N+A   + LG YT A+   +
Sbjct: 3   QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQ 62

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDN 105
             +          IR  K    L  A  A  ++   + E+D   
Sbjct: 63  QGLRYTSTAEHVAIRS-KLQYRLELAQGAVGSVQIPVVEVDELP 105

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
            +KE+GN  F  G  +EA   Y + +    +N         N+A  L K+G+Y +AI  C
Sbjct: 6   KQKEQGNSLFKQGLYREAVHCYDQLITAQPQN----PVGYSNKAMALIKLGEYTQAIQMC 61

Query: 294 TLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
              L           R  K  + L   +  V   + 
Sbjct: 62  QQGLRYTSTAEHVAIRS-KLQYRLELAQGAVGSVQI 96

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 12/57 (21%), Positives = 23/57 (40%)

Query: 280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
           LFK G Y EA+      +   P      S +      LG+Y + +   ++  +  ++
Sbjct: 14  LFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score =  103 bits (258), Expect = 4e-27
 Identities = 42/87 (48%), Positives = 52/87 (59%), Gaps = 5/87 (5%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
            +YY++LGV  +AS +DIKKAYRK AL  HPD++ +     K E EK FK V EAY +LS
Sbjct: 9   ANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPD----NKEEAEKKFKLVSEAYEVLS 64

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGA 441
           D  KRS YDR G D     G      +
Sbjct: 65  DSKKRSLYDRAGCDSWRAGGGASGPSS 91

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score =  103 bits (258), Expect = 7e-27
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 6/88 (6%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY+ILGV+K A   +I+KAY++ A+ +HPDR+    +A     E  FKE+ EAY +L+
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEA-----EAKFKEIKEAYEVLT 57

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAGAN 442
           D  KR+ YD+ G    E  GMGG     
Sbjct: 58  DSQKRAAYDQYGHAAFEQGGMGGGGFGG 85

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  109 bits (275), Expect = 4e-26
 Identities = 38/365 (10%), Positives = 81/365 (22%), Gaps = 31/365 (8%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
                     +  L+   + L    +A  + P       +       L      L     
Sbjct: 72  VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ 131

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A  L P     +        AL         L     L P+   +A  S           
Sbjct: 132 AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ-VVAIASNGG-------- 182

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
                      +  +  L +A                    L  +Q    +         
Sbjct: 183 ---GKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 239

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           Q   A+   G      + +   +        L P    A      +   +A         
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASNSGGKQAL-------- 289

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
                Q    +  +A  +  + +      + +       +      +     A    P  
Sbjct: 290 --ETVQRLLPVLCQAHGLTPQQVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPQQ 343

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYYK 360
           + A++       AL   +  +    + + +              K+ L+  +  +    +
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403

Query: 361 ILGVT 365
             G+T
Sbjct: 404 AHGLT 408

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  108 bits (271), Expect = 1e-25
 Identities = 36/327 (11%), Positives = 70/327 (21%), Gaps = 30/327 (9%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
                 +G  +  L+   + L    +A  + P       +       L      L     
Sbjct: 174 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 233

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKNF 122
           A  L P+    +        AL         L     L P    AIA  S   +      
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQ------ 287

Query: 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
                       +  +  L +A                    L  +Q    +        
Sbjct: 288 -------ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
            Q   A+          + +   +        L P+   A          +A        
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAI--ASNGGGKQAL------- 391

Query: 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
                 Q    +  +A  +    +      + +       +      +     A    P 
Sbjct: 392 ---ETVQRLLPVLCQAHGLTPEQVVA----IASHDGGKQALETVQRLLPVLCQAHGLTPQ 444

Query: 303 YLKALSRRCKCFHALGQYKECVIDAEK 329
            + A++       AL      +   + 
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 33/299 (11%), Positives = 65/299 (21%), Gaps = 28/299 (9%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
                 +G  +  L+   + L    +A  + P       +       L      L     
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 267

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A  L P+    +        AL         L     L P              +A    
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQV-----------VAIASN 316

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
           G  K       +  +  L +A                    L  +Q    +         
Sbjct: 317 GGGKQ-ALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           +   A+   G      + +   +        L P+   A          +A         
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI--ASHDGGKQAL-------- 425

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
                Q    +  +A  +  + +      + +       +      ++    AL    N
Sbjct: 426 --ETVQRLLPVLCQAHGLTPQQVVA----IASNGGGRPALESIVAQLSRPDPALAALTN 478

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 91.0 bits (226), Expect = 8e-20
 Identities = 36/366 (9%), Positives = 82/366 (22%), Gaps = 41/366 (11%)

Query: 7   HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVS 66
            +        +  +  AL      +++ P       +       L      L     A  
Sbjct: 43  KRGGVTAVEAVHAWRNALTG--APLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHG 100

Query: 67  LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMA-KNFEGA 125
           L P+    +        AL         L     L P+   +A  S      A +  +  
Sbjct: 101 LTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ-VVAIASHDGGKQALETVQAL 159

Query: 126 SKAFE---ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
                          +                          L  +Q    +        
Sbjct: 160 LPVLCQAHGLTPEQVVAIASNGG---------------GKQALETVQRLLPVLCQAHGLT 204

Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
            Q   A+   G      + +   +        L P    A          +A        
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASNGGGKQA-------- 254

Query: 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN 302
                 Q    +  +A  +  + +      + + +     +      +     A    P 
Sbjct: 255 --LETVQRLLPVLCQAHGLTPQQVVA----IASNSGGKQALETVQRLLPVLCQAHGLTPQ 308

Query: 303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYY 359
            + A++       AL   +  +    + + +           +  K+ L+  +  +    
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368

Query: 360 KILGVT 365
           +  G+T
Sbjct: 369 QAHGLT 374

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 88.7 bits (220), Expect = 5e-19
 Identities = 33/365 (9%), Positives = 81/365 (22%), Gaps = 31/365 (8%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
              H +    +      + A +     + +          R     +  ++ +       
Sbjct: 4   HHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGA 63

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
            ++L P     +        AL         L     L P    +A  S           
Sbjct: 64  PLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ-VVAIASHDGG------- 115

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
                      +  +  L +A                    L  +Q    +         
Sbjct: 116 ----KQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP 171

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           +   A+   G      + +   +        L P    A          +A         
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASNGGGKQA--------- 220

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
                Q    +  +A  +  + +      + +       +      +     A    P  
Sbjct: 221 -LETVQRLLPVLCQAHGLTPQQVVA----IASNGGGKQALETVQRLLPVLCQAHGLTPQQ 275

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDYYK 360
           + A++       AL   +  +    + + +              K+ L+  +  +    +
Sbjct: 276 VVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQ 335

Query: 361 ILGVT 365
             G+T
Sbjct: 336 AHGLT 340

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 21/217 (9%), Positives = 39/217 (17%), Gaps = 46/217 (21%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
                  +G  +  L+   + L    +A  + P       +       L      L    
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 368

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
            A  L P     +        AL         L     L P+                  
Sbjct: 369 QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ----------------- 411

Query: 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
                          +                          L  +Q    +        
Sbjct: 412 --------------VVAIASHDG---------------GKQALETVQRLLPVLCQAHGLT 442

Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH 219
            Q   A+   G      + +   ++     L    + 
Sbjct: 443 PQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 99.7 bits (249), Expect = 7e-26
 Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 9/86 (10%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
              Y +LGV+ +A+  ++KK YRK AL +HPD+ T          EK FKE+ EA+ IL+
Sbjct: 8   TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD-------TEK-FKEISEAFEILN 59

Query: 416 DPTKRSRYDR-GEDIMEDSGMGGHAG 440
           DP KR  YD+ G +     G     G
Sbjct: 60  DPQKREIYDQYGLEAARSGGPSFGPG 85

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score =  100 bits (250), Expect = 8e-26
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
              Y +LGV   A+   IK AY ++  ++HPDR++ + +A      + F  + +AY +L 
Sbjct: 17  TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEA-----AERFTRISQAYVVLG 71

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGAN 442
             T R +YDRG    ED    G   ++
Sbjct: 72  SATLRRKYDRGLLSDEDLRGPGSGPSS 98

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 99.3 bits (248), Expect = 9e-26
 Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 4/70 (5%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
            DYY++L V + ASS+ IKKAYRK AL  HPD++       K E E+ FK+V EAY +LS
Sbjct: 9   VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPE----NKEEAERRFKQVAEAYEVLS 64

Query: 416 DPTKRSRYDR 425
           D  KR  YDR
Sbjct: 65  DAKKRDIYDR 74

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 98.4 bits (246), Expect = 2e-25
 Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 7/80 (8%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYY+ LG+ + AS ++IK+AYR++AL +HPD++           E+ FKE+ EAY +LS
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP------GAEEKFKEIAEAYDVLS 56

Query: 416 DPTKRSRYDR-GEDIMEDSG 434
           DP KR  +DR GE+ ++ SG
Sbjct: 57  DPRKREIFDRYGEEGLKGSG 76

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 98.1 bits (245), Expect = 3e-25
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 19/101 (18%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
             YY ILGV K+AS   IKKA+ K A+ +HPD++ +     K      F+E+ EAY  LS
Sbjct: 7   GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAK------FREIAEAYETLS 60

Query: 416 DPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDPG 456
           D  +R  YD            GH+    F     Q+    G
Sbjct: 61  DANRRKEYDT----------LGHSA---FTSGKGQSGPSSG 88

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 94.2 bits (235), Expect = 5e-24
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 5/70 (7%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
            DYY+ILGV +NAS  +IKKAY + A  +HPD + +  +A     ++ F ++ EAY +LS
Sbjct: 7   GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKA-----KEKFSQLAEAYEVLS 61

Query: 416 DPTKRSRYDR 425
           D  KR +YD 
Sbjct: 62  DEVKRKQYDA 71

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 93.5 bits (233), Expect = 9e-24
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 9/74 (12%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
             YY +LGV  +AS +++KKAYRK AL  HPD++ +         E+ FK++ +AY +LS
Sbjct: 8   TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG-------AEQ-FKQISQAYEVLS 59

Query: 416 DPTKRSRYDR-GED 428
           D  KR  YD+ GE+
Sbjct: 60  DEKKRQIYDQGGEE 73

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 93.5 bits (233), Expect = 1e-23
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 6/70 (8%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
            DYY+ILGV++ AS +D+KKAYR+ AL  HPD++      +       FK +G AY +LS
Sbjct: 7   GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEA------FKAIGTAYAVLS 60

Query: 416 DPTKRSRYDR 425
           +P KR +YD+
Sbjct: 61  NPEKRKQYDQ 70

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 93.6 bits (233), Expect = 1e-23
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
            D Y++LGV++ AS  DIKKAY+K A   HPD++ +     +      F ++ +AY ILS
Sbjct: 17  FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDR------FIQISKAYEILS 70

Query: 416 DPTKRSRYDR 425
           +  KR+ YD 
Sbjct: 71  NEEKRTNYDH 80

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 97.7 bits (244), Expect = 3e-23
 Identities = 49/327 (14%), Positives = 90/327 (27%), Gaps = 64/327 (19%)

Query: 2   LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
           ++ +      +  +K   Y++A++ +++  +   N    Y  RA CY  L  Y  A  D 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 62  KL---AVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALET 117
           +     V+     S                        K L +   D+ AI Q   A++ 
Sbjct: 61  ETYFSKVNATKAKSA-----------------DFEYYGKILMKKGQDSLAIQQYQAAVDR 103

Query: 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS 177
                +                Y                       +      A +    
Sbjct: 104 DTTRLD---------------MYGQIGS---------------YFYNKGNFPLAIQYMEK 133

Query: 178 ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237
            +     +P   +  G   YY+ +   A + F  +L+L P+         RA+   A+  
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG--YLWRARANAAQDP 191

Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLL----HNRATVLFKMGKYNEAIADC 293
           +        K   A   Y + +++ A         L       A          +A A  
Sbjct: 192 DT-------KQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244

Query: 294 TLALEKDPNYLKALSRRCKCFHALGQY 320
              L  DP   KA+            +
Sbjct: 245 KNILALDPTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV---NHFQLLLK 214
            A+ L   N   EA E+ N + A    +P     R +C Y   K DLA      +   + 
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 215 LAPDHA-----------------KAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAF 252
                +                  A + Y+ A      + +     G+  +  G    A 
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128

Query: 253 DIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312
               + ++    +  +     +      +   +Y +A +     LE  PN       R +
Sbjct: 129 QYMEKQIRPTTTDPKV----FYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR 184

Query: 313 CFHALGQYKECVIDAEKIYK 332
              A     +    A+  Y+
Sbjct: 185 ANAAQDPDTK-QGLAKPYYE 203

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 30/184 (16%), Positives = 53/184 (28%), Gaps = 22/184 (11%)

Query: 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244
           N D  F     L+ ++    A+  F  L     +        +RA               
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY--NRRAVCYYEL--------- 50

Query: 245 AGKNQEA---FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
             K   A    + Y   +          S        +L K G+ + AI     A+++D 
Sbjct: 51  -AKYDLAQKDIETYFSKVNAT----KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT 105

Query: 302 NYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE--VKDY 358
             L    +    F+  G +   +   EK  +      +    L +A    K        +
Sbjct: 106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165

Query: 359 YKIL 362
            K+L
Sbjct: 166 VKVL 169

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 28/242 (11%), Positives = 61/242 (25%), Gaps = 40/242 (16%)

Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS---ILATDKQN 185
           F+ N+Y  A+   ++   +   S      +A C   L +   AQ+   +    +   K  
Sbjct: 14  FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73

Query: 186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-----------------KAKETYKR 228
                  G  L    +  LA+  +Q  +                         A +  ++
Sbjct: 74  SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEK 133

Query: 229 AKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM 283
                    +     G   +   +  +A   + + L++              RA      
Sbjct: 134 QIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGY----LWRARANAAQ 189

Query: 284 G---KYNEAIADCTLALEKDP--------NYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
               K   A       +E             ++A       +       +     + I  
Sbjct: 190 DPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249

Query: 333 MD 334
           +D
Sbjct: 250 LD 251

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 18/65 (27%), Positives = 25/65 (38%)

Query: 268 INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDA 327
           +N  +    A  LFK   Y EAI        K  N     +RR  C++ L +Y     D 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 328 EKIYK 332
           E  + 
Sbjct: 61  ETYFS 65

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 92.5 bits (230), Expect = 5e-23
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 356 KDYYKILGVTKNASS-DDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
           ++ Y +L V +       + KAYR  A  HHPDR     + +KL  E+ F+ +  AY  L
Sbjct: 15  ENCYDVLEVNREEFDKQKLAKAYRALARKHHPDR--VKNKEEKLLAEERFRVIATAYETL 72

Query: 415 SDPTKRSRYDR 425
            D   ++ YD 
Sbjct: 73  KDDEAKTNYDY 83

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  100 bits (251), Expect = 6e-23
 Identities = 42/344 (12%), Positives = 92/344 (26%), Gaps = 40/344 (11%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G T    K    A K   +   +    +  Y  R   Y  L  +  A +  K A+ +D +
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCY-LRGQVYTNLSNFDRAKECYKEALMVDAK 232

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
             +   + +  ++   D                ++ A  +           +        
Sbjct: 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS---------LYMLKLNKTS 283

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
             D          +++    S    L KA+ L   +R  +   I   IL  D  N D   
Sbjct: 284 HEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYP 343

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHA-----------------KAKETYKRAKLLK 233
           +    L+   + +        L+   P+ A                 +A+  + ++  + 
Sbjct: 344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD 403

Query: 234 AKKEE-----GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE 288
            +         +   + G++ +A   YT A ++                    ++G    
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP----YLFLGMQHMQLGNILL 459

Query: 289 AIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
           A      +          L+            +     A   ++
Sbjct: 460 ANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQT----AINHFQ 499

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 91.4 bits (227), Expect = 8e-20
 Identities = 34/324 (10%), Positives = 74/324 (22%), Gaps = 31/324 (9%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
              +   +   +  + Y  +I+     +     +A    +   +   L      + +DP 
Sbjct: 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY 337

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
                   +      G+          L +  P+             +   +        
Sbjct: 338 NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKA------VTWLAVGIYY------LC 385

Query: 131 ANDYRTAMFYLDRA--MDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188
            N    A  Y  ++  MD       +    A   A      +A     +     +     
Sbjct: 386 VNKISEARRYFSKSSTMDPQFGP-AWIGF-AHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

Query: 189 VFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248
               G+       + LA  + Q    L           +   +   K             
Sbjct: 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL--NELGVVAFNK----------SDM 491

Query: 249 QEAFDIYTEALKIDARNININSK---LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
           Q A + +  AL +  +  +          N      K+  Y+ AI      L    N   
Sbjct: 492 QTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551

Query: 306 ALSRRCKCFHALGQYKECVIDAEK 329
             +     +         +    +
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 91.4 bits (227), Expect = 8e-20
 Identities = 51/298 (17%), Positives = 85/298 (28%), Gaps = 25/298 (8%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
            +T +   ++   L   ++ + + P     Y    A     G        +   V   P 
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 71  FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMA-KNFEGASKA 128
            +   +      + +     AR    K+   +DP     A    A         + A  A
Sbjct: 372 KAVTWLAVGIYYLCVNKISEARRYFSKSST-MDPQF-GPAWIGFAHSFAIEGEHDQAISA 429

Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188
                Y TA       + QG       L        L  +  A E   S  A  + +P  
Sbjct: 430 -----YTTAA-----RLFQGTHLPYLFL--GMQHMQLGNILLANEYLQSSYALFQYDPLL 477

Query: 189 VFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248
           +   G+  +    M  A+NHFQ  L L       ++ +            G+        
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL-----GHAYRKLKMY 532

Query: 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
             A D   + L +   + N+        A V         AI     +L   PN + A
Sbjct: 533 DAAIDALNQGLLLSTNDANV----HTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 86.0 bits (213), Expect = 4e-18
 Identities = 39/321 (12%), Positives = 97/321 (30%), Gaps = 28/321 (8%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
                    Y++A    ++      + A  Y   A C + L  +  AL+           
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNLLGETNPFRKD 182

Query: 71  FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEG----- 124
                 + +  +  +    +      +    L   + A     +AL   AK +E      
Sbjct: 183 EKNA-NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241

Query: 125 ---ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
                 A E  D    + Y   + +     ++  ++K    +H + L+ A++   S +  
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY-LSSING 300

Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
            +++ D +  +   L+   +    +     +L++ P +      +               
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH------------LAS 348

Query: 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
              +G+  + + I  + +          +            + K +EA    + +   DP
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPE----KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 302 NYLKALSRRCKCFHALGQYKE 322
            +  A       F   G++ +
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQ 425

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.1 bits (182), Expect = 3e-14
 Identities = 40/239 (16%), Positives = 66/239 (27%), Gaps = 40/239 (16%)

Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ---- 184
               DY  A   L +  D    S   + + A CL  L   Q A  +        K     
Sbjct: 128 CCTGDYARAKCLLTKE-DLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNA 186

Query: 185 ------------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL 232
                            ++RG         D A   ++  L +     +A +      LL
Sbjct: 187 NKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLL 246

Query: 233 KAKKEE----------------------GNEKFVAGKNQEAFDIYTEALKIDARNININS 270
            A +E                          K     +++      + L         +S
Sbjct: 247 TADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEK-SS 305

Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
            LL  +A  LF   ++ + +A  T  LE DP  L          H  G+  +  + +  
Sbjct: 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 30/219 (13%), Positives = 56/219 (25%), Gaps = 39/219 (17%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
            ++     ++ +A+  Y+ A  +       Y      +M LG    A +  + + +L   
Sbjct: 414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY 473

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
               L       + +                     AI     AL  + K          
Sbjct: 474 DPLLL-----NELGV-----------VAFNKSDMQTAINHFQNALLLVKKTQSNEK---- 513

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
              +      L                       L     A +  N  L     + +   
Sbjct: 514 --PWAATWANL-----------------GHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
              L   +     LA+ H    L ++P+   A +  KRA
Sbjct: 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 31/285 (10%), Positives = 66/285 (23%), Gaps = 39/285 (13%)

Query: 87  DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD 146
            +P          +        AQ + +L            A     Y+ A F  ++ +D
Sbjct: 53  ISPMTYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD 112

Query: 147 QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV 206
                       A+          A+ +         ++    ++   CL        A+
Sbjct: 113 ITGNPNDA-FWLAQVYCCTGDYARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGAL 170

Query: 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE----GNEKFVAGKNQEAFDIYTEALKID 262
           N          D   A +   +   +K +       G           A + Y EAL +D
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 263 ---------------------------------ARNININSKLLHNRATVLFKMGKYNEA 289
                                            ++      + L+               
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

Query: 290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
             D   ++         L  +        ++ + +    KI ++D
Sbjct: 291 AEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 22/196 (11%), Positives = 51/196 (26%), Gaps = 3/196 (1%)

Query: 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224
             + + A  +   +L     NP+  F              A         L    +  + 
Sbjct: 97  QQQYKCAAFVGEKVLDIT-GNPNDAFWLAQVYCCTGDYARAK-CLLTKEDLYNRSSACRY 154

Query: 225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG 284
                 +     +               +     L +    I + + + + R  V   + 
Sbjct: 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214

Query: 285 KYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLE 344
            ++ A      AL  D    +A  +     H L   +E  +  +  Y   +  +      
Sbjct: 215 NFDRAKECYKEALMVDAKCYEAFDQLVSN-HLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273

Query: 345 EAKRLLKRSEVKDYYK 360
                L ++  +D  +
Sbjct: 274 LYMLKLNKTSHEDELR 289

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  100 bits (250), Expect = 6e-23
 Identities = 40/117 (34%), Positives = 62/117 (52%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K   N  +K K Y  A+K YS+AI + P+ A YYGNR+  Y+    Y YAL DA  
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
           A+ LD ++ KG  R+   N+ALG    A  + + + ++ P +     + +    + K
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
           K + N+ F A   + A   Y++A++++  N    +    NR+    +   Y  A+ D T 
Sbjct: 10  KTQANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATR 65

Query: 296 ALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSE 354
           A+E D  Y+K   RR     ALG+++  + D E + K+  + ++     +E  +++K+  
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125

Query: 355 VKDYYKI 361
            +     
Sbjct: 126 FERAIAG 132

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ 184
           A+  F+A DY  A+ +  +A++   ++  Y   ++           A   A   +  DK+
Sbjct: 13  ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK 72

Query: 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244
                + R        K   A+  ++ ++K+ P    AK  Y+     K  K++  E+ +
Sbjct: 73  YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN--KIVKQKAFERAI 130

Query: 245 AGKNQE 250
           AG   +
Sbjct: 131 AGDEHK 136

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 92.2 bits (229), Expect = 9e-23
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 352 RSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGE 409
           R E      +LG+ ++A  +   ++KAY K+    HPD+  +         E+  K++  
Sbjct: 4   REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNT 54

Query: 410 AYGILSDPTKRSRYDRGEDIMEDSGMGG 437
            Y  + D  K +         + + +  
Sbjct: 55  LYKKMEDGVKYAHQPDFGGFWDATEIPT 82

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 92.0 bits (229), Expect = 1e-22
 Identities = 27/124 (21%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A K KE GN  YK K +  ALK Y +A  + P    Y  N+AA Y   G Y    +  + 
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 64  AVSLDP-------RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
           A+ +         + +K   R             A                + +  +A +
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEK 123

Query: 117 TMAK 120
            + +
Sbjct: 124 ILKE 127

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 90.8 bits (226), Expect = 4e-22
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 11/133 (8%)

Query: 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE 288
            K    +KE GN+ +       A   Y +A ++D  N+      + N+A V F+ G YN+
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNK 56

Query: 289 AIADCTLALEKDPN-------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHN 341
               C  A+E             KA +R    +    +YK+ +    K      + +   
Sbjct: 57  CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

Query: 342 FLEEAKRLLKRSE 354
             ++A+++LK  E
Sbjct: 117 KCQQAEKILKEQE 129

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 93.7 bits (233), Expect = 2e-22
 Identities = 41/162 (25%), Positives = 59/162 (36%), Gaps = 13/162 (8%)

Query: 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI------------NINSKLLH 274
           ++ +     KEEGNE F   +  EA   Y EAL                   NI      
Sbjct: 33  EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92

Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
           N AT   K   Y +AI   +  L+ D N +KAL +        G  +E   +  K   ++
Sbjct: 93  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152

Query: 335 -NSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKK 375
            N+ +  N  E     LK +  KD     G+       + KK
Sbjct: 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKK 194

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 86.4 bits (214), Expect = 9e-20
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 16/133 (12%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------AAYYGNRAAC 47
           A   KE+GN  +K  + ++A+  Y EA+    +                  +   N A C
Sbjct: 38  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97

Query: 48  YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
           Y     Y  A+D A   + +D    K L +    N+  G    A+ NL     L+P+N  
Sbjct: 98  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157

Query: 108 IAQESKALETMAK 120
           I    +      K
Sbjct: 158 IRNSYELCVNKLK 170

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 14/137 (10%)

Query: 119 AKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR---------LQ 169
                 A        Y+ A+ +     +        K    E   +LN            
Sbjct: 51  KNEINEAIVK-----YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP 105

Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
           +A + A+ +L  DK N  A++  G+   Y   ++ A  +      L P++   + +Y+  
Sbjct: 106 KAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165

Query: 230 KLLKAKKEEGNEKFVAG 246
                +  + ++    G
Sbjct: 166 VNKLKEARKKDKLTFGG 182

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 88.6 bits (220), Expect = 7e-22
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 7/92 (7%)

Query: 334 DNSRENHNFLEEAKRLLKR-SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA 392
            +S  + +F +E    ++R    KD + +LGV   AS D++ KAYRK A++ HPD+    
Sbjct: 4   GSSGSSASFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAP 63

Query: 393 TQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD 424
                      FK V  A   L    K     
Sbjct: 64  GSEDA------FKAVVNARTALLKNIKSGPSS 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 94.7 bits (236), Expect = 1e-21
 Identities = 52/325 (16%), Positives = 93/325 (28%), Gaps = 32/325 (9%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
               Y    +    K  S  +   P  A+         + L         +   V L P 
Sbjct: 29  AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS 88

Query: 71  -----FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALE-TMAKNFE 123
                F+ G    +  +        AR  L KA   L+      A  +      +    +
Sbjct: 89  NPVSWFAVGCYYLMVGH----KNEHARRYLSKATT-LEKTY-GPAWIAYGHSFAVESEHD 142

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
            A  A     Y TA       + +G       +         N  + A+   +  L+   
Sbjct: 143 QAMAA-----YFTAA-----QLMKGCHLPMLYI--GLEYGLTNNSKLAERFFSQALSIAP 190

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
           ++P  +   G+  + + +   A   F   L+            K   LL      G+   
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL---GHVCR 247

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
              K  EA D + +AL +  +N +           +   MG +  A+     AL    + 
Sbjct: 248 KLKKYAEALDYHRQALVLIPQNAST----YSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303

Query: 304 LKALSRRCKCFHALGQYKECVIDAE 328
             +++    C        E  I A+
Sbjct: 304 TFSVTMLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 248 NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKAL 307
           N+ +  +  E++     N+++    + + A   +    +       ++ +EKDP +   L
Sbjct: 4   NKPSETVIPESVDGLQENLDV----VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 59

Query: 308 SRRCKCFHALGQYKECVIDAEK 329
                    L +  E    + K
Sbjct: 60  PVHIGTLVELNKANELFYLSHK 81

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 93.1 bits (232), Expect = 4e-21
 Identities = 48/351 (13%), Positives = 89/351 (25%), Gaps = 75/351 (21%)

Query: 2   LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
           +  E   E+G +  KL   ++A   +       P     + +             A+   
Sbjct: 19  MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIAL 78

Query: 62  KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAK 120
             A  LDP+                      + L  +       N A+A     L +  +
Sbjct: 79  NHARMLDPKD-----------------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA 180
             +  S   +A+     +                        A  N  +E + + ++ L 
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDF---------------FFAAPNEYRECRTLLHAALE 166

Query: 181 TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
            +  +       G+     +  D A  + +  ++L PD A+     K    L        
Sbjct: 167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLW--NKLGATLANG----- 219

Query: 241 EKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
                 + QEA D Y  AL I                  N A     M +Y+ A      
Sbjct: 220 -----NRPQEALDAYNRALDINPGYVRVMY---------NMAVSYSNMSQYDLAAKQLVR 265

Query: 296 ALEKDPNYLKALSRRC------------KCFHALGQYKECVIDAEKIYKMD 334
           A+                             + + +        E  Y  +
Sbjct: 266 AIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL----VELTYAQN 312

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 32/296 (10%), Positives = 72/296 (24%), Gaps = 51/296 (17%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G TQ + ++   A+   + A  + P   A +   A  +        AL   +  +   P+
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 121

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
           + +     ++ ++ + D      +       +           ALE              
Sbjct: 122 YEQLGSVNLQADVDIDDLNVQSEDF-FFAAPNEYRECRTLLHAALEM------------- 167

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
             +       L      GV                N    A       +     +     
Sbjct: 168 NPNDAQLHASL------GVL-----------YNLSNNYDSAAANLRRAVELRPDDAQLWN 210

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
             G  L   ++   A++ +   L + P + +    Y  A                 +   
Sbjct: 211 KLGATLANGNRPQEALDAYNRALDINPGYVRVM--YNMAVSYSNM----------SQYDL 258

Query: 251 AFDIYTEALKIDA--------RNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           A      A+ +           +      +      +L  M + +         +E
Sbjct: 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 6/114 (5%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G T     +  +AL  Y+ A+ + P       N A  Y  +  Y  A      A+ +   
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLK-ALQELDPDNPAIAQESKALETMAKNFE 123
            +           +     +     +  L  ++  +      ++ +E  AK F 
Sbjct: 273 GTTPTG-----EASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 12/71 (16%), Positives = 25/71 (35%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
           ++     + +        +Y +       A+ + PN A  + +    Y +   Y  A  +
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194

Query: 61  AKLAVSLDPRF 71
            + AV L P  
Sbjct: 195 LRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 8/77 (10%), Positives = 16/77 (20%), Gaps = 4/77 (5%)

Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
           G   +    Y         N  +  +        + K+    EA        +  P   +
Sbjct: 1   GHMLQNNTDYPFEAN----NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE 56

Query: 306 ALSRRCKCFHALGQYKE 322
           A            +   
Sbjct: 57  AWRSLGLTQAENEKDGL 73

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 87.3 bits (217), Expect = 7e-21
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A   K+ GN  YK K + KA   Y +AI + P+   +Y N+AA Y     +   +   + 
Sbjct: 8   AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67

Query: 64  AVSLDP-------RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114
           AV +           +K + R         D   A            D   + +  + 
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 84.6 bits (210), Expect = 5e-20
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC 293
           A+K+ GN  +     ++A   Y +A+++D  NI       +N+A V F+  K+ E +  C
Sbjct: 10  AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI----TFYNNKAAVYFEEKKFAECVQFC 65

Query: 294 TLALEKDPN-------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA 346
             A+E             KA+SR    F         V    +        E    ++E 
Sbjct: 66  EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKEL 125

Query: 347 KR 348
           ++
Sbjct: 126 EK 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 87.4 bits (217), Expect = 2e-20
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 16/146 (10%)

Query: 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--------------DARNININSKLL 273
           + K ++A +++GNE FV    +EA D Y +AL                       N  L 
Sbjct: 7   KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY 66

Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
            N +     +G  +EA    +  L+++    KAL RR K   A  +  E   D + + + 
Sbjct: 67  ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126

Query: 334 D--NSRENHNFLEEAKRLLKRSEVKD 357
               +      ++         +   
Sbjct: 127 HPAAASVVAREMKIVTERRAEKKADS 152

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 84.4 bits (209), Expect = 2e-19
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 19/148 (12%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV------------------AAYYGNRA 45
            E  ++ GN  +  K Y +A+  Y +A++    +                     Y N +
Sbjct: 11  VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMS 70

Query: 46  ACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN 105
            CY+ +G    A + +   +  +    K L R+ K  IA      A  +LK L    P  
Sbjct: 71  QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130

Query: 106 P-AIAQESKALETMAKNFEGASKAFEAN 132
              +A+E K +       +  S+   + 
Sbjct: 131 ASVVAREMKIVTERRAEKKADSRVTYSK 158

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
           ++C  ++  L EA+E ++ +L  ++ N  A+F R        K+D A    +LLL+  P 
Sbjct: 70  SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129

Query: 219 HAKAKETYKRAKLLKAKKEEGNEK 242
            A      +  K++  ++ E    
Sbjct: 130 AASVVA--REMKIVTERRAEKKAD 151

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 41/213 (19%), Positives = 78/213 (36%), Gaps = 24/213 (11%)

Query: 218 DHAKAKETYK-----RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI------ 266
              KAKE+++     + +     KE G   F  GK ++A   Y + +             
Sbjct: 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE 187

Query: 267 -----NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK 321
                 +      N A    K+  ++ AI  C  ALE D N  K LSRR +   A+  ++
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247

Query: 322 ECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKD---YYKILGVTKNASSDDIKKAY 377
               D +K+ ++  N++     L   ++ ++R   ++   Y  +         ++  KA 
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA----EEENKAK 303

Query: 378 RKRALVHHPDRHTNATQAQKLEQEKLFKEVGEA 410
            + +   HP       + +        +   EA
Sbjct: 304 AEASSGDHPTDTEMKEEQKSNTAGSQSQVETEA 336

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 87.6 bits (217), Expect = 3e-19
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---------------AAYYGNRAACY 48
           +   KE G   +K  +Y +AL  Y + +S                     A + N A C+
Sbjct: 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206

Query: 49  MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108
           + L  ++ A++    A+ LD    KGL R+ + ++A+ D   AR++ + + +L P+N A 
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266

Query: 109 AQESKALETMAKNFEGASKAFEAN 132
             +    +   +      K   AN
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYAN 290

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
           A C   L     A E  N  L  D  N   +  RG      +  +LA   FQ +L+L P+
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262

Query: 219 HAKAKETYKRAKLLKAKKEEGNEKFVAGK 247
           +  AK      +    ++    EK +   
Sbjct: 263 NKAAKTQLAVCQQRIRRQLA-REKKLYAN 290

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 93.2 bits (231), Expect = 3e-20
 Identities = 40/324 (12%), Positives = 75/324 (23%), Gaps = 39/324 (12%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
                 +   +  L+   + L    +A  + P       +       L      L     
Sbjct: 192 VVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ 251

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKNF 122
           A  L P     +   I    AL         L     L PD   AIA      + +    
Sbjct: 252 AHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET-- 309

Query: 123 EGASKAFEANDYRTAMFYLDRAM----DQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178
                       +  +  L +A     DQ VA  +           L  +Q    +    
Sbjct: 310 -----------VQRLLPVLCQAHGLTPDQVVAIAS----HDGGKQALETVQRLLPVLCQA 354

Query: 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
                    A+   G      + +   +        L PD   A  +    + L      
Sbjct: 355 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQAL------ 408

Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
                     Q    +  +A  +    +      + +       +      +        
Sbjct: 409 -------ETVQRLLPVLCQAHGLTPDQVVA----IASHDGGKQALETVQRLLPVLCQTHG 457

Query: 299 KDPNYLKALSRRCKCFHALGQYKE 322
             P  + A++       AL   ++
Sbjct: 458 LTPAQVVAIASHDGGKQALETVQQ 481

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 91.2 bits (226), Expect = 1e-19
 Identities = 39/323 (12%), Positives = 72/323 (22%), Gaps = 37/323 (11%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
                  G  +  L+   + L    +A  + P+      +       L      L     
Sbjct: 294 VVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA---QESKALETMAK 120
           A  L P     +        AL         L     L PD           +ALET+ +
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQR 413

Query: 121 NFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
                 +A     D   A+   D                      L  +Q    +     
Sbjct: 414 LLPVLCQAHGLTPDQVVAIASHDGG-----------------KQALETVQRLLPVLCQTH 456

Query: 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239
                   A+          + +   +        L PD   A  +              
Sbjct: 457 GLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASN------------I 504

Query: 240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK 299
             K      Q    +  +A  +    +      + +       +      +     A   
Sbjct: 505 GGKQALATVQRLLPVLCQAHGLTPDQVVA----IASNGGGKQALETVQRLLPVLCQAHGL 560

Query: 300 DPNYLKALSRRCKCFHALGQYKE 322
            P+ + A++       AL   + 
Sbjct: 561 TPDQVVAIASNGGGKQALETVQR 583

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 80.8 bits (199), Expect = 3e-16
 Identities = 33/321 (10%), Positives = 66/321 (20%), Gaps = 30/321 (9%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
                  +   +  L    + L    +A  + P+      +       L      L    
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLC 555

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKN 121
            A  L P     +        AL         L     L      AIA      + +   
Sbjct: 556 QAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQAL--- 612

Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
                        +  +  L +A     A              L  +Q    +       
Sbjct: 613 ----------ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGL 662

Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
                 A+   G      + +   +        L  +   A          +A       
Sbjct: 663 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA--IASNNGGKQA------- 713

Query: 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
                  Q    +  +A  +    +      + +       +      +     A    P
Sbjct: 714 ---LETVQRLLPVLCQAHGLTPDQVVA----IASNGGGKQALETVQRLLPVLCQAHGLTP 766

Query: 302 NYLKALSRRCKCFHALGQYKE 322
             + A++       AL   + 
Sbjct: 767 AQVVAIASNIGGKQALETVQR 787

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 71.2 bits (174), Expect = 3e-13
 Identities = 39/334 (11%), Positives = 80/334 (23%), Gaps = 25/334 (7%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
                     +  L+   + L    +A  + P+      +       L      L     
Sbjct: 633 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 692

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA----IAQESKALETMA 119
           A  L       +        AL         L     L PD            +ALET+ 
Sbjct: 693 AHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 752

Query: 120 KNFEGASKAFEAN-DYRTAMF----------YLDRAMDQGVASKTYKLMKAECLAHLNRL 168
           +      +A         A+            + R +          L +   +A     
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812

Query: 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR 228
           ++A E    +L    Q       + + +  +     A+   Q LL +             
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVV 872

Query: 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE 288
           A       ++  E       Q    +  +   +    +   +     +A     +     
Sbjct: 873 AIASNIGGKQALETV-----QRLLPVLCQDHGLTLDQVVAIASNGGKQA-----LETVQR 922

Query: 289 AIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
            +          P+ + A++       AL   + 
Sbjct: 923 LLPVLCQDHGLTPDQVVAIASNSGGKQALETVQR 956

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.7 bits (165), Expect = 4e-12
 Identities = 35/320 (10%), Positives = 72/320 (22%), Gaps = 39/320 (12%)

Query: 20  YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQI 79
            + A +     + +          R     M  ++          ++L P     +    
Sbjct: 140 LTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNN 199

Query: 80  KCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKNFEGASKAFEANDYRTAM 138
               AL         L     L P    AIA                         +  +
Sbjct: 200 GGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK-------------QALETMQRLL 246

Query: 139 FYLDRAM----DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194
             L +A     DQ VA  +           L  +Q    +             A+   G 
Sbjct: 247 PVLCQAHGLPPDQVVAIAS----NIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGG 302

Query: 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDI 254
                + +   +        L PD   A          +A              Q    +
Sbjct: 303 GKQALETVQRLLPVLCQAHGLTPDQVVA--IASHDGGKQAL----------ETVQRLLPV 350

Query: 255 YTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314
             +A  +    +      + +       +      +     A    P+ + A++      
Sbjct: 351 LCQAHGLTPDQV----VAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN-GGK 405

Query: 315 HALGQYKECVIDAEKIYKMD 334
            AL   +  +    + + + 
Sbjct: 406 QALETVQRLLPVLCQAHGLT 425

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 65.4 bits (159), Expect = 2e-11
 Identities = 36/329 (10%), Positives = 79/329 (24%), Gaps = 39/329 (11%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
                 +G  +  L+   + L    +A  +         +       L      L     
Sbjct: 667 VVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-----------AIAQES 112
           A  L P     +        AL         L     L P              A+    
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQ 786

Query: 113 KALETMAKNFEGASKAFEANDYRT----AMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168
           + L  + ++         A         A+  + R +     +      +   +A     
Sbjct: 787 RLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGG 846

Query: 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLK-------LAPDHAK 221
           ++A E    +L    Q+      + + +  +     A+   Q LL        L  D   
Sbjct: 847 KQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVV 906

Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
           A  +    + L+               Q    +  +   +    +      + + +    
Sbjct: 907 AIASNGGKQALET-------------VQRLLPVLCQDHGLTPDQVVA----IASNSGGKQ 949

Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRR 310
            +      +          PN + A++  
Sbjct: 950 ALETVQRLLPVLCQDHGLTPNQVVAIASN 978

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.3 bits (104), Expect = 8e-05
 Identities = 15/119 (12%), Positives = 26/119 (21%), Gaps = 1/119 (0%)

Query: 205 AVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264
               +     L      A E       L   +     K       EA      AL     
Sbjct: 126 VGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPL 185

Query: 265 NININS-KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
           N+       + +       +      +     A    P  + A++       AL   + 
Sbjct: 186 NLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQR 244

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 89.8 bits (222), Expect = 3e-19
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 339 NHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKL 398
           +H+    +   ++    +++Y +LGV+K ASS +I++A++K AL  HPD++ N   A   
Sbjct: 4   SHHHHHHSSGHIEGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNA--- 60

Query: 399 EQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHMFQTYFDP 455
                F ++  AY +L D   R +YD+  +   +   GG   +  + ++ F  Y D 
Sbjct: 61  --HGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDD 115

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 78.2 bits (193), Expect = 4e-18
 Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 344 EEAKRLLKRSEVK-DYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEK 402
                L+ R  +  +   ++         + KK  R+  L  HPD++            +
Sbjct: 3   HHHHHLVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPE----NHDIANE 58

Query: 403 LFKEVGEAYGILSDPTKRSRYDR 425
           +FK +      L    K++  D+
Sbjct: 59  VFKHLQNEINRLE---KQAFLDQ 78

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 82.7 bits (205), Expect = 6e-18
 Identities = 44/332 (13%), Positives = 84/332 (25%), Gaps = 66/332 (19%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVC----PNVAAYYGNRAACYMMLGMYTYAL 58
           S  K +          Q    L    + ++         A     R   Y  LG+   A 
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALAR 63

Query: 59  DDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALET 117
           +D   A+++ P                   P   + L   L +    + A       LE 
Sbjct: 64  NDFSQALAIRPDM-----------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 106

Query: 118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANS 177
                           Y  A  +L+R +                L +  R + AQ+   +
Sbjct: 107 -------------DPTYNYA--HLNRGI---------------ALYYGGRDKLAQDDLLA 136

Query: 178 ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237
               D  +P       L     D+   A    +   + +               L    E
Sbjct: 137 FYQDDPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWG--WNIVEFYLGNISE 193

Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
           +          +      T+   +       N             +G  + A A   LA+
Sbjct: 194 Q-------TLMERLKADATDNTSLAEHLSETNF----YLGKYYLSLGDLDSATALFKLAV 242

Query: 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
             + +              LGQ ++ + ++++
Sbjct: 243 ANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 31/160 (19%), Positives = 55/160 (34%), Gaps = 10/160 (6%)

Query: 207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKI 261
              Q  L+     A+ ++      L   ++ +     G      G    A + +++AL I
Sbjct: 13  VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI 72

Query: 262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK 321
                 +     +     L + G ++ A       LE DP Y  A   R    +  G+ K
Sbjct: 73  RPDMPEV----FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDK 128

Query: 322 ECVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDYYK 360
               D    Y+ D N      +L  A++ L   + K+  K
Sbjct: 129 LAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 168

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 44/350 (12%), Positives = 83/350 (23%), Gaps = 76/350 (21%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             +  E+G  + +      A+  +  A+   P     +               A+   + 
Sbjct: 64  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNF 122
            + L P                    TA   L  +         A       L       
Sbjct: 124 CLELKPDN-----------------QTALMALAVSFTNESLQRQACEILRDWLRYTP--- 163

Query: 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
                      Y   +   +          + +++ +  L   +   E +E+  + +  D
Sbjct: 164 ----------AYAHLVTPAEEGAGGAGLGPSKRILGS--LLSDSLFLEVKELFLAAVRLD 211

Query: 183 KQNPDAV--FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN 240
             + D       G+      + D AV+ F   L + P+        K    L        
Sbjct: 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW--NKLGATLANG----- 264

Query: 241 EKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
                 +++EA   Y  AL++      +R          N       +G + EA+     
Sbjct: 265 -----NQSEEAVAAYRRALELQPGYIRSRY---------NLGISCINLGAHREAVEHFLE 310

Query: 296 ALEKDPNYLKALSRRC-----------KCFHALGQYKECVIDAEKIYKMD 334
           AL                              LGQ              D
Sbjct: 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA----YGAADARD 356

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 35/295 (11%), Positives = 81/295 (27%), Gaps = 48/295 (16%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G TQ + +Q   A+      + + P+        A  +    +   A +  +  +   P 
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
           +   L+   +          ++  L +L               A+               
Sbjct: 165 Y-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL------------- 210

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
                            GV                    +A +   + L+    +     
Sbjct: 211 DPTSIDPDVQCGL----GVL-----------FNLSGEYDKAVDCFTAALSVRPNDYLLWN 255

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
             G  L   ++ + AV  ++  L+L P + +++  Y                   G ++E
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSR--YNLGISCINL----------GAHRE 303

Query: 251 AFDIYTEALKIDARNI-------NINSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           A + + EAL +  ++         ++  +       L  +G+ +   A     L 
Sbjct: 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 36/232 (15%), Positives = 59/232 (25%), Gaps = 38/232 (16%)

Query: 169 QEAQEIANSILATDKQNP----DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE 224
                  +     +++NP       F  GL    +  +  AV  F+  ++  P H +A  
Sbjct: 43  DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEA-- 100

Query: 225 TYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG 284
                                 +   A       L++       N   L   A       
Sbjct: 101 WQYLGTTQAEN----------EQELLAISALRRCLELKPD----NQTALMALAVSFTNES 146

Query: 285 KYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLE 344
              +A       L   P Y   ++   +     G             ++  S  + +   
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG--------LGPSKRILGSLLSDSLFL 198

Query: 345 EAKRLLKR-------SEVKDYYKILGVTKNASS--DDIKKAYRKRALVHHPD 387
           E K L          S   D    LGV  N S   D     +   AL   P+
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA-ALSVRPN 249

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G T     Q  +A+  Y  A+ + P       N     + LG +  A++    A+++  +
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLK-ALQELDPDNPAIAQESKALETMAKNFE 123
                 R  +       +    S L+ AL  L   +   A +++ L T+   F 
Sbjct: 318 S-----RGPRGEGGA-MSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 229 AKLLKAKKEEGN-EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYN 287
           A+L +  K +     +++  +      Y +  + +  N   +            + G   
Sbjct: 22  AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLP 81

Query: 288 EAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
            A+     A+++DP +++A            Q   
Sbjct: 82  NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 82.8 bits (204), Expect = 1e-17
 Identities = 38/167 (22%), Positives = 55/167 (32%), Gaps = 19/167 (11%)

Query: 227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI-------------DARNININSKLL 273
           +R      +K +GN  F   K +EA   Y  A+                   + + +   
Sbjct: 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCH 233

Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM 333
            N A  L K+ +Y+EAI  C + L ++    KAL RR K    LGQ      D  K  K 
Sbjct: 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293

Query: 334 D-NSRENHNFLEEAKRLLKRSEVKD---YYKILGVTKNASSDDIKKA 376
             + +     L       K    K    Y  I             K+
Sbjct: 294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFK--GKDEGGAKSKS 338

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 17/134 (12%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY-----------------YGNRAA 46
           A++ K DGN+ +K ++  +A++ Y  AI+   +   +                 + N AA
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAA 238

Query: 47  CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106
           C + L  Y  A+    + ++ + +  K L R+ K    LG   +AR + +  Q+  PD+ 
Sbjct: 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDK 298

Query: 107 AIAQESKALETMAK 120
           AI +E +AL    K
Sbjct: 299 AIRRELRALAEQEK 312

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 49.6 bits (118), Expect = 9e-07
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 119 AKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK----------AECLAHLNRL 168
            +  E A +      Y  A+ Y+       +  K   +            A CL  L R 
Sbjct: 192 EEKLEEAMQQ-----YEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY 246

Query: 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR 228
            EA    N +L  +++NP A+F RG       +MD A + F+   K APD    +   + 
Sbjct: 247 DEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRA 306

Query: 229 AKLLKAKKEE 238
               +    +
Sbjct: 307 LAEQEKALYQ 316

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 74.2 bits (182), Expect = 8e-17
 Identities = 16/81 (19%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 348 RLLKRSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFK 405
           R+L R++ +   ++L + +    D   +++AY++++L+ HPD+  +           L +
Sbjct: 3   RVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQ 53

Query: 406 EVGEAYGILSDPTKRSRYDRG 426
           E+   +G         R + G
Sbjct: 54  ELNSLWGTFKTEVYNLRMNLG 74

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 78.3 bits (194), Expect = 1e-16
 Identities = 40/304 (13%), Positives = 84/304 (27%), Gaps = 67/304 (22%)

Query: 18  KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR 77
             +  +         +          R       G Y  A +    A+  +         
Sbjct: 6   HHHHHSSGLVPRGSHMASMTGGQQMGR---GSEFGDYEKAAEAFTKAIEENKED------ 56

Query: 78  QIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRT 136
                           N    L  ++    A+A   KALE               +   T
Sbjct: 57  -----------AIPYINFANLLSSVNELERALAFYDKALEL-------------DSSAAT 92

Query: 137 AMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL 196
           A +        G                    +EA+++    L    +N D  ++ G  L
Sbjct: 93  AYYGA------GNV-----------YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135

Query: 197 YYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYT 256
              ++  LA+ + Q  ++L  +  +A+  ++    L  +          G   EA   + 
Sbjct: 136 VKLEQPKLALPYLQRAVELNENDTEAR--FQFGMCLANE----------GMLDEALSQFA 183

Query: 257 EALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA 316
              + D  + +      +N            +A+     A++  P+++ AL  +    H 
Sbjct: 184 AVTEQDPGHADA----FYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239

Query: 317 LGQY 320
              +
Sbjct: 240 HHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 23/190 (12%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA---- 220
               ++A E     +  +K++          L   ++++ A+  +   L+L    A    
Sbjct: 36  FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95

Query: 221 -------------KAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTEALKID 262
                        +AK+ +++A     +  +     G       + + A      A++++
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155

Query: 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
             +              L   G  +EA++      E+DP +  A       +      ++
Sbjct: 156 ENDTEA----RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREK 211

Query: 323 CVIDAEKIYK 332
               A ++  
Sbjct: 212 ----ALEMLD 217

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 16/131 (12%)

Query: 202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI 261
           M  + +H      L P  +         +               G  ++A + +T+A++ 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQ--------MGRGSEFGDYEKAAEAFTKAIEE 52

Query: 262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK 321
           +  +    +    N A +L  + +   A+A    ALE D +   A       +     YK
Sbjct: 53  NKED----AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYK 108

Query: 322 ECVIDAEKIYK 332
           E    A+ +++
Sbjct: 109 E----AKDMFE 115

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.1 bits (126), Expect = 9e-08
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 18/107 (16%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           GN     + Y +A   + +A+         +       + L     AL   + AV L+  
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157

Query: 71  FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALE 116
            ++                 AR      L      + A++Q +   E
Sbjct: 158 DTE-----------------ARFQFGMCLANEGMLDEALSQFAAVTE 187

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 40.2 bits (95), Expect = 7e-04
 Identities = 8/44 (18%), Positives = 15/44 (34%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY 54
           G T    +   KAL+   +AI + P+       +         +
Sbjct: 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 46/326 (14%), Positives = 89/326 (27%), Gaps = 58/326 (17%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
           E++      +          S + K Y                     +  G     +  
Sbjct: 28  EMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILF 87

Query: 61  AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMA 119
            + A+  DP  ++                 A   L     E + +  AI    + LE   
Sbjct: 88  MEAAILQDPGDAE-----------------AWQFLGITQAENENEQAAIVALQRCLELQP 130

Query: 120 KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
            N +             A+  L                 A    + +  Q+A E   + +
Sbjct: 131 NNLK-------------ALMAL-----------------AVSYTNTSHQQDACEALKNWI 160

Query: 180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA---KETYKRAKLLKAKK 236
             + +    V  +        +M  +     +L  +   + +A           L     
Sbjct: 161 KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL- 219

Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
             G    ++G+   A D +  AL +   +      L +     L    +  EA+   T A
Sbjct: 220 --GVLFHLSGEFNRAIDAFNAALTVRPED----YSLWNRLGATLANGDRSEEAVEAYTRA 273

Query: 297 LEKDPNYLKALSRRCKCFHALGQYKE 322
           LE  P ++++          LG Y+E
Sbjct: 274 LEIQPGFIRSRYNLGISCINLGAYRE 299

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 75.5 bits (186), Expect = 5e-15
 Identities = 42/316 (13%), Positives = 84/316 (26%), Gaps = 64/316 (20%)

Query: 2   LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
                  E+G  + K       +     AI   P  A  +               A+   
Sbjct: 63  KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122

Query: 62  KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKN 121
           +  + L P   K L       +A+           +         A       ++   K 
Sbjct: 123 QRCLELQPNNLKAL-----MALAV-----------SYTNTSHQQDACEALKNWIKQNPKY 166

Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
                                   ++  +    + M ++     + L+  +E+       
Sbjct: 167 KYLVK-------------------NKKGSPGLTRRM-SKSPVDSSVLEGVKELYLEAAHQ 206

Query: 182 --DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG 239
             D  +PD     G+  +   + + A++ F   L + P+        +    L       
Sbjct: 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLW--NRLGATLANG---- 260

Query: 240 NEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCT 294
                  +++EA + YT AL+I      +R          N       +G Y EA+++  
Sbjct: 261 ------DRSEEAVEAYTRALEIQPGFIRSRY---------NLGISCINLGAYREAVSNFL 305

Query: 295 LALEKDPNYLKALSRR 310
            AL             
Sbjct: 306 TALSLQRKSRNQQQVP 321

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 12/122 (9%), Positives = 26/122 (21%), Gaps = 8/122 (6%)

Query: 201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK 260
           + + A    +   +         E        +  +     +    +NQ       +   
Sbjct: 4   EFERAKAAVESDTEFWDKMQAEWE--------EMARRNWISENQEAQNQVTVSASEKGYY 55

Query: 261 IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY 320
               N   +            K G     I     A+ +DP   +A              
Sbjct: 56  FHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENE 115

Query: 321 KE 322
           + 
Sbjct: 116 QA 117

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 78.2 bits (192), Expect = 2e-16
 Identities = 44/273 (16%), Positives = 85/273 (31%), Gaps = 33/273 (12%)

Query: 51  LGMYTYALDDAKLAVSLDPRFS-KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA 109
           +G Y   +++A+      P    +  +   +  +A             L E+ P +    
Sbjct: 12  IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKY------GVVLDEIKPSSAPEL 65

Query: 110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ 169
           Q   A+   A+     S+         A    + +    V + T+ LM A    +     
Sbjct: 66  Q---AVRMFAEYLASHSRRDAI----VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPD 118

Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
            A    +        + + + +    L   D++DLA    + +     D    +      
Sbjct: 119 AALRTLH-----QGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWV 173

Query: 230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA 289
            L               K Q+A+ I+ E     +        LL+ +A      G++  A
Sbjct: 174 SLAAGG----------EKLQDAYYIFQEMADKCSPT----LLLLNGQAACHMAQGRWEAA 219

Query: 290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
                 AL+KD  + + L         LG+  E
Sbjct: 220 EGVLQEALDKDSGHPETLINLVVLSQHLGKPPE 252

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 59.4 bits (143), Expect = 5e-10
 Identities = 38/229 (16%), Positives = 68/229 (29%), Gaps = 21/229 (9%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE           + +  + +     + SV      +    A+ Y        AL     
Sbjct: 72  AEYLASHSRRDAIVAELDREM-----SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
             SL+       I      + L     AR  LK +Q+ D D   + Q + A  ++A   E
Sbjct: 127 GDSLECMAMTVQIL-----LKLDRLDLARKELKKMQDQDEDAT-LTQLATAWVSLAAGGE 180

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
                      + A +      D+   +      +A C     R + A+ +    L  D 
Sbjct: 181 ---------KLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHF-QLLLKLAPDHAKAKETYKRAKL 231
            +P+ +    +   +  K     N +   L      H   KE   +   
Sbjct: 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEND 280

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 18  KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIR 77
           ++   A   + E    C         +AAC+M  G +  A    + A+  D    + LI 
Sbjct: 180 EKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239

Query: 78  QIKCNIALGDAPTARSN-LKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA 131
            +  +  LG  P   +  L  L++    +P I    K       +F+     +  
Sbjct: 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQYAP 290

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 79.0 bits (194), Expect = 6e-16
 Identities = 34/201 (16%), Positives = 69/201 (34%), Gaps = 18/201 (8%)

Query: 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI-----------DARN 265
              +   +T ++ +     KE+G   F  GK  +A   Y + +                +
Sbjct: 253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312

Query: 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI 325
            +       N A    K+ +Y +A+  C  AL  D    K L RR +    + +++    
Sbjct: 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372

Query: 326 DAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKD---YYKILGVTKNASSDDIKKAYRKRA 381
           D EK+ +++  ++     +   ++  K    +D   Y  +       +  D K+   K  
Sbjct: 373 DFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK---KFAEQDAKEEANKAM 429

Query: 382 LVHHPDRHTNATQAQKLEQEK 402
                +  TN         E+
Sbjct: 430 GKKTSEGVTNEKGTDSQAMEE 450

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 74.7 bits (183), Expect = 1e-14
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 20/149 (13%)

Query: 6   KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAY---------------YGNRAACYMM 50
             KE G   +K  +Y +A+  Y + +S                       + N A CY+ 
Sbjct: 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK 329

Query: 51  LGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQ 110
           L  YT A++    A+ LD    KGL R+ +  + + +  +A+ + + + E++P N A   
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 111 ESKALETMAKNFEGASKAFEANDYRTAMF 139
           +    +  AK      +   AN     MF
Sbjct: 390 QISMCQKKAKEHNERDRRIYAN-----MF 413

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 37/193 (19%), Positives = 68/193 (35%), Gaps = 20/193 (10%)

Query: 65  VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG 124
           + L PR+  G   + K  I           LK+ ++         +E       A   E 
Sbjct: 217 LYLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQ--AAIVKEK 274

Query: 125 ASKAFEANDYRTAMFYLDRA-----MDQGVASKTYKLMK----------AECLAHLNRLQ 169
            +  F+   Y  A+    +      M+ G++ K  K  +          A C   L    
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334

Query: 170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA 229
           +A E  +  L  D  N   ++ RG      ++ + A   F+ +L++ P +  A+      
Sbjct: 335 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISM- 393

Query: 230 KLLKAKKEEGNEK 242
              + K +E NE+
Sbjct: 394 --CQKKAKEHNER 404

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 77.7 bits (191), Expect = 1e-15
 Identities = 53/406 (13%), Positives = 106/406 (26%), Gaps = 55/406 (13%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC---------PNVAAYYGNRAACYMML 51
           E  A         ++   Q   AL+C  +A  +                +GN A  Y  +
Sbjct: 48  EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM 107

Query: 52  GMYTYALDDAKLAVSLDPRFS---KGLIRQIKCNIALGDAPTARSNL--------KALQE 100
           G  +           +  +FS   +    ++ C           +          KAL E
Sbjct: 108 GRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL-E 166

Query: 101 LDPDNP-------AIAQESKALETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASK 152
             P NP         +             +   +A   N D +     L           
Sbjct: 167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA---------- 216

Query: 153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL 212
              L   +         E +++    L       D +          D+ D A+   +  
Sbjct: 217 ---LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273

Query: 213 LKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL 272
           L+  P++A            K  +     +      ++  ++   A+    +    N  L
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL 333

Query: 273 ---LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
                  A++     +Y EA         K+   +       +  +      +C   A  
Sbjct: 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393

Query: 330 IYK-----MDNSRENHNFLEEAKRLLKRSEVKD-----YYKILGVT 365
            +         SRE     ++ +++ K    K+        +L   
Sbjct: 394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFL 439

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 41/299 (13%), Positives = 86/299 (28%), Gaps = 30/299 (10%)

Query: 4   AEKHKEDGNTQYKLK---QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
            E         Y+L        A+    +AI + P+        A     +        +
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231

Query: 61  AKL----AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP------AIAQ 110
            +     A+   P  +  L    K      +   A   LK   E  P+N           
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291

Query: 111 ESKALETMAKNFEGASKAFEAND-YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ 169
            +K  + M     G     +  +    A+ +L +A +          + A   A  ++ +
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351

Query: 170 EAQEIANSILATDKQNPDAVFVR----GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225
           EA+       + +        +        LY     D A++HF   +K+     + ++ 
Sbjct: 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM 411

Query: 226 YKRAKLLKAKKEEGNEKFVA------------GKNQEAFDIYTEALKIDARNININSKL 272
             + + +   +   N                  K Q+A +     L+  +   + +S  
Sbjct: 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 57.3 bits (138), Expect = 5e-09
 Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 21/241 (8%)

Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD----------DKMDLAVNH 208
           A    H+ RL + Q   + +    ++      +    L  +          ++ + A   
Sbjct: 101 AWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC 160

Query: 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
           F+  L+  P + +       A                  +Q A D   +A++++  N  +
Sbjct: 161 FEKALEKKPKNPEFTSGLAIASYRLDNW---------PPSQNAIDPLRQAIRLNPDNQYL 211

Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
              L      +  +  +  E       ALEK P     L    K +    +  + +   +
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271

Query: 329 KIYKMD-NSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIK-KAYRKRALVHHP 386
           K  +   N+   H  +    R      +      +   +          A+ K+A   + 
Sbjct: 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331

Query: 387 D 387
           +
Sbjct: 332 N 332

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 26/115 (22%), Positives = 42/115 (36%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
            E+    G  QY+  ++  A K +     +    A Y+    AC   LG+Y  AL     
Sbjct: 18  LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY 77

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118
              +D    +      +C++ LGD   A S   + + L    PA    +     M
Sbjct: 78  GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 62.5 bits (152), Expect = 5e-12
 Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 16/145 (11%)

Query: 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
             +L  L+ D  +    Y                + AGK  +A  I+     +D  +   
Sbjct: 7   LAMLRGLSEDTLEQ--LYALGFNQ----------YQAGKWDDAQKIFQALCMLDHYD--- 51

Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
            ++           +G Y +A+   +     D N  +      +C   LG          
Sbjct: 52  -ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110

Query: 329 KIYKMDNSRENHNFLEEAKRLLKRS 353
               +  ++  H  L      +  +
Sbjct: 111 SARALAAAQPAHEALAARAGAMLEA 135

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 24/149 (16%), Positives = 39/149 (26%), Gaps = 12/149 (8%)

Query: 94  NLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153
            L  L+ L  D          L  +  N       ++A  +  A                
Sbjct: 6   TLAMLRGLSEDTLE------QLYALGFNQ------YQAGKWDDAQKIFQALCMLDHYDAR 53

Query: 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLL 213
           Y L    C   L   ++A +  +     D   P   F    C      +D A + F    
Sbjct: 54  YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSAR 113

Query: 214 KLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
            LA      +    RA  +        ++
Sbjct: 114 ALAAAQPAHEALAARAGAMLEAVTARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 12/147 (8%)

Query: 27  YSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG 86
            +    +  +               G +  A    +    LD   ++  +    C  +LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 87  DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD 146
               A  +      +D + P      +     A+         +  D   A      A  
Sbjct: 67  LYEQALQSYSYGALMDINEP------RFPFHAAECH------LQLGDLDGAESGFYSARA 114

Query: 147 QGVASKTYKLMKAECLAHLNRLQEAQE 173
              A   ++ + A   A L  +   ++
Sbjct: 115 LAAAQPAHEALAARAGAMLEAVTARKD 141

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 71.5 bits (175), Expect = 6e-15
 Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 357 DYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
           DY+ + G+      D   +   ++     +HPD+  + +QA++L   +    + +A+  L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 415 SDPTKRSRYDR 425
             P  R+ Y  
Sbjct: 62  RHPLMRAEYLL 72

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 76.0 bits (186), Expect = 8e-15
 Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 16/183 (8%)

Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
           A        ++EA  +    L    +   A       L    K+  A+ H++  ++++P 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 219 HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRAT 278
            A A         LK               Q A   YT A++I+       +    N A+
Sbjct: 76  FADAY--SNMGNTLKE----------MQDVQGALQCYTRAIQINPAF----ADAHSNLAS 119

Query: 279 VLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE 338
           +    G   EAIA    AL+  P++  A      C   +  + +     +K+  +   + 
Sbjct: 120 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179

Query: 339 NHN 341
             N
Sbjct: 180 EKN 182

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 59.1 bits (142), Expect = 2e-09
 Identities = 33/212 (15%), Positives = 55/212 (25%), Gaps = 46/212 (21%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
            N + +     +A++ Y +A+ V P  AA + N A+     G    AL   K A+ + P 
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
           F+            + D   A        +++P                           
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD----------------------- 112

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
                 A   L                 A        + EA     + L      PDA  
Sbjct: 113 ------AHSNL-----------------ASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA 222
               CL             + L+ +  D  + 
Sbjct: 150 NLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 54.0 bits (129), Expect = 6e-08
 Identities = 29/158 (18%), Positives = 53/158 (33%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A+ +   GNT  +++    AL+CY+ AI + P  A  + N A+ +   G    A+   + 
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A+ L P F         C   + D       +K L  +  D     +        +  + 
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYP 196

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC 161
            +    +A   R     LD+          +       
Sbjct: 197 LSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLS 234

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 272 LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV 324
            L+N A +  + G   EA+     ALE  P +  A S         G+ +E +
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 69.6 bits (170), Expect = 2e-14
 Identities = 22/115 (19%), Positives = 40/115 (34%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
            E+       QY+   Y  A   +     +    + ++    AC   +G Y  A+     
Sbjct: 21  LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118
              +D    +      +C +  G+   A S L   QEL  + P   + S  + +M
Sbjct: 81  GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSM 135

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 17/144 (11%)

Query: 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
             +L +++ D  +    Y  A             + +G  ++A  ++     +D  +   
Sbjct: 10  IAMLNEISSDTLEQ--LYSLAFNQ----------YQSGXYEDAHXVFQALCVLDHYDSRF 57

Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
                         MG+Y+ AI   +     D    +      +C    G+  E      
Sbjct: 58  ----FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 329 KIYKMDNSRENHNFL-EEAKRLLK 351
              ++  +      L      +L+
Sbjct: 114 LAQELIANXPEFXELSTRVSSMLE 137

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 86  GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM 145
           G   +    +  L E+  D          L ++A N       +++  Y  A        
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLE------QLYSLAFNQ------YQSGXYEDAHXVFQALC 48

Query: 146 DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA 205
                   + L    C   + +   A    +     D   P   F    CL    ++  A
Sbjct: 49  VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108

Query: 206 VNHFQLLLKLAPDHAKAKETYKRAKL----LKAKKEEGNE 241
            +   L  +L  +  +  E   R       +K KKE  +E
Sbjct: 109 ESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 4/89 (4%)

Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
           G             +I +  +      L++ A   ++ G Y +A          D    +
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLE----QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR 56

Query: 306 ALSRRCKCFHALGQYKECVIDAEKIYKMD 334
                  C  A+GQY   +        MD
Sbjct: 57  FFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 17/158 (10%), Positives = 37/158 (23%), Gaps = 12/158 (7%)

Query: 19  QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ 78
                    +    +  +      + A      G Y  A    +    LD   S+  +  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 79  IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAM 138
             C  A+G    A  +      +D   P     +            A             
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF-------- 113

Query: 139 FYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
                A +       +  +     + L  ++  +E+ +
Sbjct: 114 ----LAQELIANXPEFXELSTRVSSMLEAIKLKKEMKH 147

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 70.5 bits (172), Expect = 3e-14
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 2/122 (1%)

Query: 331 YKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTK--NASSDDIKKAYRKRALVHHPDR 388
                 RE+  F  + + L      +DY+ ++   +     +  ++  Y++   + HPD 
Sbjct: 18  GPWGPGREDRFFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDF 77

Query: 389 HTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQHM 448
            +  +Q +K   EK    V +AY  L  P  R  Y      +E      +     F   +
Sbjct: 78  FSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEI 137

Query: 449 FQ 450
            +
Sbjct: 138 ME 139

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 73.1 bits (179), Expect = 4e-14
 Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 20/214 (9%)

Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLY---------YDDKMDLAVNH 208
             E       +  A    +  L    +N  ++    + L          +   +  +V  
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALT-HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
            +L +++     ++      A  L      G        +Q+A   Y +A K+D +  + 
Sbjct: 202 AKLAVQMDVLDGRSWYILGNA-YLSLYFNTGQNP---KISQQALSAYAQAEKVDRKASS- 256

Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV---- 324
           N  L  NRAT+      Y EA+   + A   DP + +   R  +    L +    +    
Sbjct: 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316

Query: 325 -IDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKD 357
               +K+  M  S    +         + +  + 
Sbjct: 317 KTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQK 350

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 16/165 (9%)

Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP 217
           + E    L +LQ   +       +  +               ++M+  +   + +L  A 
Sbjct: 40  EEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQ 99

Query: 218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA 277
             A+A     + K L    +          + EA  + ++A+K++   +       +   
Sbjct: 100 VEAQA--LMLKGKALNVTPD---------YSPEAEVLLSKAVKLEPELVEA----WNQLG 144

Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
            V +K G    A    + AL    N   +L         L     
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSG 188

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 18/147 (12%), Positives = 41/147 (27%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
              +   G      +Q   A     +      +    + NRA  +     Y  AL+    
Sbjct: 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           A +LDP + +   R+ +    L    +   +    +     +   +     L        
Sbjct: 284 AAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRY 343

Query: 124 GASKAFEANDYRTAMFYLDRAMDQGVA 150
            ++   +       +  L   ++ G  
Sbjct: 344 QSASGQKMTLELKPLSTLQPGVNSGTV 370

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 69.4 bits (170), Expect = 8e-14
 Identities = 24/177 (13%), Positives = 58/177 (32%), Gaps = 17/177 (9%)

Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235
            ++    + +        L    +   D A   ++ LL+ AP++         A++   +
Sbjct: 44  TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDC--LEACAEMQVCR 101

Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG-KYNEAIADCT 294
                     G+ ++A  +Y + L+++A N+              +    +  + +    
Sbjct: 102 ----------GQEKDALRMYEKILQLEADNLAA----NIFLGNYYYLTAEQEKKKLETDY 147

Query: 295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLK 351
             L        A  R         +Y++     +K+     S E    L++  R+ K
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEK 204

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 21/177 (11%), Positives = 45/177 (25%), Gaps = 15/177 (8%)

Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
           +    N  RT M+Y          S       A          +A      +L     N 
Sbjct: 29  QTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV 88

Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
           D +           +   A+  ++ +L+L  D+  A              E         
Sbjct: 89  DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN--IFLGNYYYLTAE--------- 137

Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
           + ++  +   + L    +         +          +Y +A       + + P+ 
Sbjct: 138 QEKKKLETDYKKLSSPTKMQYA----RYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 16/142 (11%)

Query: 237 EEGNEKFVAGKNQEAFDIYTEALKID------------ARNININSKLLHNRATVLFKMG 284
           ++ +    AG+N +A   + + + ++             +N  I+SKL    A    K  
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 285 KYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFL 343
            Y++A       L+K PN +  L    +     GQ K+ +   EKI +++ ++   + FL
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 344 EEAKRLLKRSE---VKDYYKIL 362
                L    E   ++  YK L
Sbjct: 129 GNYYYLTAEQEKKKLETDYKKL 150

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 55.1 bits (133), Expect = 6e-09
 Identities = 34/251 (13%), Positives = 69/251 (27%), Gaps = 61/251 (24%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA-AYY---------------GNRAA 46
           S ++  +  +   +  Q  +A+  + + I++  +    YY                  A 
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 47  CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP 106
            Y     Y  A    K  +   P     L    +  +  G    A    + + +L+ DN 
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 107 AIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN 166
                                   AN +    +YL                         
Sbjct: 123 -----------------------AANIFLGNYYYLT----------------------AE 137

Query: 167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY 226
           + ++  E     L++  +   A +  GL   +  + + A N  Q ++   P     K   
Sbjct: 138 QEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197

Query: 227 KRAKLLKAKKE 237
           K  ++ K    
Sbjct: 198 KILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 49.4 bits (118), Expect = 5e-07
 Identities = 26/148 (17%), Positives = 43/148 (29%), Gaps = 19/148 (12%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
           E+S++   E      K + Y KA   Y E +   PN        A   +  G    AL  
Sbjct: 51  EISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRM 110

Query: 61  AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
            +  + L+          +  NI LG+              + +   +  + K L +  K
Sbjct: 111 YEKILQLEADN-------LAANIFLGNY--------YYLTAEQEKKKLETDYKKLSSPTK 155

Query: 121 NFEG----ASKAFEANDYRTAMFYLDRA 144
                            Y  A   L + 
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKV 183

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.9 bits (167), Expect = 3e-13
 Identities = 32/209 (15%), Positives = 73/209 (34%), Gaps = 36/209 (17%)

Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221
           L  L R   A  +    L  + Q+P+A++           ++ A+ + + L+   P +  
Sbjct: 15  LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74

Query: 222 AKETYKRAKLLKA-KKEEGNEKFVAGKNQEAFDIYTEALKID------------------ 262
                  ++   A  ++  + +   G  ++A  +  +A +++                  
Sbjct: 75  GY--MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG 132

Query: 263 -----------ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC 311
                      A  +    ++    A +   MG+ +EA+A    ALE+ P  L    R  
Sbjct: 133 ERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192

Query: 312 KCFHALGQYKECVIDAEKIYKMDNSRENH 340
                 G+ +E    A +   +++   +H
Sbjct: 193 SALLLKGKAEE----AARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 66.4 bits (163), Expect = 1e-12
 Identities = 44/304 (14%), Positives = 71/304 (23%), Gaps = 90/304 (29%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
           + + +     G   Y L +Y  AL  +  A+   P         A   + LG+   AL++
Sbjct: 2   QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61

Query: 61  AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMA 119
            K  V+  PR+                       L +A   L        +    LE   
Sbjct: 62  GKTLVARTPRY-----------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 120 KNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI 178
              +    A   N  Y             G+             A L    +A+      
Sbjct: 105 SVLK---DAERVNPRYAPLHLQR------GLV-----------YALLGERDKAEASLKQA 144

Query: 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
           LA  +  P+             ++D A+  +   L+ AP                     
Sbjct: 145 LAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL---------------- 187

Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
                                                 A+ L   GK  EA     L   
Sbjct: 188 ----------------------------------RVRYASALLLKGKAEEAARAAALEHH 213

Query: 299 KDPN 302
              +
Sbjct: 214 HHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 45.6 bits (109), Expect = 9e-06
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           G + +  G+   A  ++  ALK + ++       L+  A    K+G  N A+ +    + 
Sbjct: 12  GVQLYALGRYDAALTLFERALKENPQDPEA----LYWLARTQLKLGLVNPALENGKTLVA 67

Query: 299 KDPNYLKA 306
           + P YL  
Sbjct: 68  RTPRYLGG 75

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
                L+ +G+Y+ A+     AL+++P   +AL    +    LG        A +  K
Sbjct: 10  RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNP----ALENGK 63

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 67.1 bits (165), Expect = 3e-13
 Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 20/172 (11%)

Query: 161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220
             A   R  +A  +   +   D  + D     G+       +D      +  L  APD+ 
Sbjct: 17  SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV 76

Query: 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL 280
           K                         K   A  +  +  + +  N N+           L
Sbjct: 77  KVA--TVLGLTYVQV----------QKYDLAVPLLIKVAEANPINFNV----RFRLGVAL 120

Query: 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
             +G+++EAI    +AL   PN  K        +  +G+++E    A   +K
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEE----ALPHFK 168

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 60.9 bits (149), Expect = 4e-11
 Identities = 18/154 (11%), Positives = 37/154 (24%), Gaps = 20/154 (12%)

Query: 179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE 238
           +  D         +G+      +   AV   + +                          
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV--ALHLGIAYVKT--- 55

Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
                  G      ++   +L     N+ +             ++ KY+ A+       E
Sbjct: 56  -------GAVDRGTELLERSLADAPDNVKV----ATVLGLTYVQVQKYDLAVPLLIKVAE 104

Query: 299 KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
            +P       R       LG++ E    A   +K
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDE----AIDSFK 134

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 30/213 (14%), Positives = 55/213 (25%), Gaps = 48/213 (22%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G +  K  +YS+A+    +             +    Y+  G      +  + +++  P 
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74

Query: 71  FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEGASKAF 129
             K                   + L     ++   + A+    K  E    NF       
Sbjct: 75  NVK-----------------VATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN------ 111

Query: 130 EANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV 189
                    F L      GVA           L +L R  EA +     L          
Sbjct: 112 -------VRFRL------GVA-----------LDNLGRFDEAIDSFKIALGLRPNEGKVH 147

Query: 190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKA 222
                      + + A+ HF+   +L    +  
Sbjct: 148 RAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 34/275 (12%), Positives = 64/275 (23%), Gaps = 98/275 (35%)

Query: 35  PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSN 94
                YY ++   +   G Y+ A+   +     D                         +
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD-----------------VDVALH 47

Query: 95  L-KALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT 153
           L  A  +    +       ++L               A D       L      G+    
Sbjct: 48  LGIAYVKTGAVDRGTELLERSLAD-------------APDNVKVATVL------GLT--- 85

Query: 154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLL 213
                      + +   A  +   +   +  N +  F  G+ L    + D A++ F++ L
Sbjct: 86  --------YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL 137

Query: 214 KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLL 273
            L P+  K                                                    
Sbjct: 138 GLRPNEGKV--------------------------------------------------H 147

Query: 274 HNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
              A    +MG++ EA+     A E D      L+
Sbjct: 148 RAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 27/65 (41%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G     L ++ +A+  +  A+ + PN    +   A  Y  +G +  AL   K A  LD  
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176

Query: 71  FSKGL 75
            S  L
Sbjct: 177 ASVEL 181

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 66.2 bits (161), Expect = 6e-13
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 22/123 (17%)

Query: 346 AKRLLKRSEVKDYYKILGVTK-------NASSDDIKKAYRKRALVHHPDRHTNATQAQKL 398
           +  L++R     +Y++   T              ++K YR+    HHPD     ++    
Sbjct: 1   SNALVQRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQ--- 57

Query: 399 EQEKLFKEVGEAYGILSDPTKRSRYD----RGEDIMEDSGMGGHAGAN---LFEQHMFQT 451
                   + +AY  L DP +RS+Y     R  D+ ++        ++   L +      
Sbjct: 58  -----SSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHD 112

Query: 452 YFD 454
              
Sbjct: 113 ELS 115

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 65.2 bits (159), Expect = 7e-13
 Identities = 15/108 (13%), Positives = 32/108 (29%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
               Y   +  +A   +            Y    AA Y +   +  A D   +A +L   
Sbjct: 43  AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM 118
               +    +C + L     A+   + + +   D     +    L+ +
Sbjct: 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 60.2 bits (146), Expect = 4e-11
 Identities = 19/154 (12%), Positives = 46/154 (29%), Gaps = 12/154 (7%)

Query: 203 DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE-----GNEKFVAGKNQEAFDIYTE 257
            L +   + +     D   +  T K    +     +       + +  G+ +EA   +  
Sbjct: 2   SLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRF 61

Query: 258 ALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL 317
               D  N++     +   A +     ++ +A     +A     N    +    +C   L
Sbjct: 62  LCIYDFYNVDY----IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117

Query: 318 GQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLK 351
               +     E + +  N   +     +A+  L 
Sbjct: 118 KAPLKAKECFELVIQHSN---DEKLKIKAQSYLD 148

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 23/150 (15%), Positives = 48/150 (32%), Gaps = 12/150 (8%)

Query: 84  ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDR 143
           A+ DA  + + LK +  +  D          + + A +F      +       A  +   
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMD------DIYSYAYDF------YNKGRIEEAEVFFRF 61

Query: 144 AMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD 203
                  +  Y +  A       + Q+A ++     A  K +   VF  G C        
Sbjct: 62  LCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPL 121

Query: 204 LAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233
            A   F+L+++ + D     +       ++
Sbjct: 122 KAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 65.6 bits (159), Expect = 1e-12
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
             +  +K +G+    + + +KK YRK  LV HPD+ T   Q  +   + +F E+ +A+  
Sbjct: 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATG--QPYEQYAKMIFMELNDAWSE 172

Query: 414 LSDPTKRSRY 423
             +  ++  Y
Sbjct: 173 FENQGQKPLY 182

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 16/133 (12%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAIS---VCPNVA-------------AYYGNRAAC 47
           +E  K  GNT +K + +  A+K Y++ +         A             +   N  AC
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 48  YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
            + +  +  A+D    A+ +DP  +K L R+ +    L +   A ++LK  QE+ P++ A
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 108 IAQESKALETMAK 120
           I  E   ++   K
Sbjct: 343 IQAELLKVKQKIK 355

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 33/148 (22%), Positives = 58/148 (39%), Gaps = 16/148 (10%)

Query: 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK------------IDAR 264
            D     +    ++ LK     GN  F +   + A   YT+ L+              A+
Sbjct: 211 VDLKDVDKILLISEDLK---NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267

Query: 265 NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV 324
              +    + N      KM  +  A+  C  ALE DP+  KAL RR + +  L +Y + +
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327

Query: 325 IDAEKIYKMD-NSRENHNFLEEAKRLLK 351
            D +K  ++    +     L + K+ +K
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKVKQKIK 355

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 30/168 (17%), Positives = 61/168 (36%), Gaps = 20/168 (11%)

Query: 87  DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMF------- 139
              +  S+    ++ D D   + +     E + KN    +  F++ ++  A+        
Sbjct: 195 KDGSGDSHPDFPEDADVDLKDVDKILLISEDL-KNI--GNTFFKSQNWEMAIKKYTKVLR 251

Query: 140 YLDRAMDQGVASKTYKLMK---------AECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
           Y++ +      +   KL             C   ++  Q A +     L  D  N  A++
Sbjct: 252 YVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALY 311

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAP-DHAKAKETYKRAKLLKAKKE 237
            R        + D A+   +   ++AP D A   E  K  + +KA+K+
Sbjct: 312 RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 359

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 33/175 (18%), Positives = 54/175 (30%), Gaps = 19/175 (10%)

Query: 159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD 218
           A         ++A       L +D +N  A  VR     Y    D A   F+  L + PD
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74

Query: 219 HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ-SKLLHNRA 277
            A+          L  +           +  E+   + +AL   A            N+ 
Sbjct: 75  SAEIN--NNYGWFLCGRL---------NRPAESMAYFDKAL---ADPTYPTPYIANLNKG 120

Query: 278 TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
               K G++  A A    +L   P +  A     +     GQ  +    A+  +K
Sbjct: 121 ICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD----ADYYFK 171

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 31/235 (13%), Positives = 64/235 (27%), Gaps = 35/235 (14%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
            +    +      + + Y +A     +A+   P     +  RA  Y  L +   A +  +
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL--QELDPDNPAIAQESKALETMAK 120
            A+S+ P                       +N        L+    ++A   KAL     
Sbjct: 67  QALSIKPDS-----------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTY 109

Query: 121 -NFEGA-----SKAFEANDYRTAMFYLDRAM----DQGVASKTYKLMKAECLAHLNRLQE 170
                A       + +   +  A  YL R++        A        A       +L +
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF----KELARTKMLAGQLGD 165

Query: 171 AQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225
           A        +  +          L       +  A   ++   +L  +   ++E 
Sbjct: 166 ADYYFKKYQSRVEVLQADDL--LLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 34/195 (17%), Positives = 53/195 (27%), Gaps = 23/195 (11%)

Query: 35  PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS-----KGLIRQIKCNIALGDAP 89
             V+      A  YM    Y  A    + A+  DP+       +  I Q      L    
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-----YLKVND 59

Query: 90  TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV 149
            A+ + +    + PD+               N  G       N    +M Y D+A+    
Sbjct: 60  KAQESFRQALSIKPDSAE-----------INNNYGWFLCGRLNRPAESMAYFDKALADPT 108

Query: 150 ASKTYKLM--KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN 207
               Y     K  C A   +   A+      LA   Q P A            ++  A  
Sbjct: 109 YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168

Query: 208 HFQLLLKLAPDHAKA 222
           +F+            
Sbjct: 169 YFKKYQSRVEVLQAD 183

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 58.6 bits (143), Expect = 5e-11
 Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE 241
             QNP+  ++ G+  Y       +++ F+  ++L P+ +K      + K L         
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW--LMKGKALYNL------ 53

Query: 242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP 301
                + +EA D Y   + +     N    +   +A  L  +              + + 
Sbjct: 54  ----ERYEEAVDCYNYVINVIEDEYN--KDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107

Query: 302 NY 303
           ++
Sbjct: 108 HH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 55.5 bits (135), Expect = 5e-10
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALE 298
           G  ++ AG   E+ D++ +A+++D             +   L+ + +Y EA+      + 
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDPEESKY----WLMKGKALYNLERYEEAVDCYNYVIN 68

Query: 299 --KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
             +D       + +      +   +     AE   K++
Sbjct: 69  VIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 53.6 bits (130), Expect = 3e-09
 Identities = 14/64 (21%), Positives = 27/64 (42%)

Query: 266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVI 325
           ++ N +  +    + +  G Y E+I     A++ DP   K    + K  + L +Y+E V 
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 326 DAEK 329
               
Sbjct: 62  CYNY 65

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPN--VAAYYGNRAACYMMLGMYTYALDDAKLAVSLD 68
           G   Y L++Y +A+ CY+  I+V  +      +  +A     +       + A+    L+
Sbjct: 47  GKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

Query: 69  PRF 71
              
Sbjct: 107 HHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 47.1 bits (113), Expect = 5e-07
 Identities = 13/69 (18%), Positives = 32/69 (46%)

Query: 1  ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
          + + E++  +G  QY    Y++++  + +AI + P  + Y+  +      L  Y  A+D 
Sbjct: 3  DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 61 AKLAVSLDP 69
              +++  
Sbjct: 63 YNYVINVIE 71

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 26/208 (12%)

Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221
                  ++A+      L  D  + DA     +    + +  LA   ++  L     +A+
Sbjct: 47  YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR 106

Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ-SKLLHNRATVL 280
               Y            G   +   + +EA+    EA       +    S++  N   V 
Sbjct: 107 VLNNY------------GGFLYEQKRYEEAYQRLLEAS---QDTLYPERSRVFENLGLVS 151

Query: 281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIY------KMD 334
            +M K  +A      +L  + N            +   +Y      A + Y         
Sbjct: 152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP----ARQYYDLFAQGGGQ 207

Query: 335 NSRENHNFLEEAKRLLKRSEVKDYYKIL 362
           N+R     +  AK    R     Y   L
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQL 235

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 31/239 (12%), Positives = 75/239 (31%), Gaps = 33/239 (13%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
           + + + + G    +     +A     +A+ + P+ A  +   A  +        A ++ +
Sbjct: 36  ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYR 95

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAK- 120
            A++ D R                      +N    L E      A  +  +A +     
Sbjct: 96  KALASDSRN-----------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYP 138

Query: 121 NFEGA-----SKAFEANDYRTAMFYLDRAM----DQGVASKTYKLMKAECLAHLNRLQEA 171
                       + +      A  Y ++++    +Q   +    L  A+ L        A
Sbjct: 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA----LEMADLLYKEREYVPA 194

Query: 172 QEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK 230
           ++  +       QN  ++ +        +  D A ++   L +L P   + +E ++  K
Sbjct: 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE-FQAEK 252

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 12/130 (9%)

Query: 207 NHFQLLLKLAPDHAKAKETYKRAKL----LKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
           +H    L     H   +   K  K       A  + G      G  ++A     +AL+ID
Sbjct: 8   HHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID 67

Query: 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
             + + +       A V     +   A  +   AL  D    + L+      +   +Y+E
Sbjct: 68  PSSADAH----AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEE 123

Query: 323 CVIDAEKIYK 332
               A +   
Sbjct: 124 ----AYQRLL 129

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 60.2 bits (146), Expect = 6e-10
 Identities = 22/176 (12%), Positives = 50/176 (28%), Gaps = 9/176 (5%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
            + +  +   +         +++ P                  +  A    + A    P 
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE 130
                +         G A  A +      +L P+ P I  +        +      +A +
Sbjct: 90  HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL----LNWRRRLCDWRALD 145

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
               +     +  A+ QGV +       +E  +   +L  A+  A +I A+ +   
Sbjct: 146 VLSAQ-----VRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLA 196

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 16/158 (10%), Positives = 34/158 (21%), Gaps = 17/158 (10%)

Query: 203 DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
              +   +  ++  P    A      A                G            L + 
Sbjct: 6   PRELLQLRAAVRHRPQDFVAW--LMLADAELG----------MGDTTAGEMAVQRGLALH 53

Query: 263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
             +       +     V +   ++ EA      A +  P +              GQ + 
Sbjct: 54  PGHPE----AVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109

Query: 323 CVIDAEKIYKMD-NSRENHNFLEEAKRLLKRSEVKDYY 359
                 + +++          L   +R L      D  
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 13/178 (7%)

Query: 131 ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF 190
             D    +  L  A+          LM A+    +      +      LA    +P+AV 
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61

Query: 191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE 250
             G   +   +   A    Q     AP+H            L+           AG+ + 
Sbjct: 62  RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA--LWLGHALED----------AGQAEA 109

Query: 251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
           A   YT A ++      I ++LL+ R   L      +   A    A+ +    ++  +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRR-LCDWRALDVLSAQVRAAVAQGVGAVEPFA 166

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 57.9 bits (140), Expect = 4e-09
 Identities = 13/121 (10%), Positives = 30/121 (24%), Gaps = 15/121 (12%)

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
           +             A++   ++           A     MG            L   P +
Sbjct: 1   MTADGPRELLQLRAAVRHRPQDFV----AWLMLADAELGMGDTTAGEMAVQRGLALHPGH 56

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENHNFL----------EEAKRLLKR 352
            +A++R  +      ++ E  +  ++             +L          E A     R
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116

Query: 353 S 353
           +
Sbjct: 117 A 117

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 2/113 (1%)

Query: 19  QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ 78
              + L     A+   P     +   A   + +G  T      +  ++L P   + + R 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 79  IKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKNFEGASKAFE 130
            +          A   L+   +  P++P        ALE  A   E A+ A+ 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYT 115

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 12/107 (11%), Positives = 25/107 (23%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
            E     G  ++  +++++A     +A    P                G    A      
Sbjct: 57  PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQ 110
           A  L P       + +     L D          ++          +
Sbjct: 117 AHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana} Length = 106

 Score = 55.0 bits (132), Expect = 8e-10
 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRH--TNATQAQKLEQEKLFKEVGEAY 411
           +K + +      + ++K+Y++  L+ HPD+     A+  QK   EK+F+ + EA+
Sbjct: 43  WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAW 97

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 56.6 bits (137), Expect = 2e-09
 Identities = 21/172 (12%), Positives = 51/172 (29%), Gaps = 13/172 (7%)

Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
           EG         + A D ++          + +S++  N   +   +    EA    T ++
Sbjct: 12  EGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 64

Query: 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKD 357
            +D +   A  +R   ++   +Y   + D ++        +  ++     +    +    
Sbjct: 65  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124

Query: 358 Y-----YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLF 404
           Y     Y      K A    +  A   ++   H           K +  +  
Sbjct: 125 YNIAFMYAKKEEWKKAEE-QLALATSMKSEPRHSKIDKAMECVWKQKLYEPV 175

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G     LK  ++A K ++ +I+   ++A  Y  R   Y     Y  A+ D K A+     
Sbjct: 44  GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103

Query: 71  ------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
                    GL  ++     L +     +  +  ++      A  Q + A  
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKK------AEEQLALATS 149

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 9/154 (5%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G      K +  AL  +S         +    N    Y +L   T A      +++ D  
Sbjct: 13  GVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH 69

Query: 71  FSKGLIRQIKCNIALGDAPTARSNL-KALQELDPDNPAIAQESKALETMAKNFEG----A 125
            +    ++            A  +L +AL +L   N  I  +   L+      E     A
Sbjct: 70  LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIA 128

Query: 126 SKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159
               +  +++ A   L  A       +  K+ KA
Sbjct: 129 FMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 34/189 (17%), Positives = 59/189 (31%), Gaps = 40/189 (21%)

Query: 116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIA 175
           E ++   EG   A +  D++ A+       D    S+            L  + EA++  
Sbjct: 5   EAISLWNEGVL-AADKKDWKGALDAFSAVQDPH--SRIC-FNIGCMYTILKNMTEAEKAF 60

Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL-LLKLAPDHAKAKETYKRAKLLKA 234
              +  DK    A F RG+  Y  +K DLA+   +  L++L  +       YK   L   
Sbjct: 61  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID---YKILGLQFK 117

Query: 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT 294
                                               ++L+N A +  K  ++ +A     
Sbjct: 118 LF--------------------------------ACEVLYNIAFMYAKKEEWKKAEEQLA 145

Query: 295 LALEKDPNY 303
           LA       
Sbjct: 146 LATSMKSEP 154

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A Length = 92

 Score = 51.9 bits (124), Expect = 6e-09
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 359 YKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD 416
           +K +G+    + + +KK YRK  LV HP + T   Q  +   + +F E+ +A+    +
Sbjct: 36  WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATG--QPYEQYAKMIFMELNDAWSEFEN 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 74/528 (14%), Positives = 152/528 (28%), Gaps = 145/528 (27%)

Query: 69  PRFSKGLIRQIKCNIALGDAPTARSNLKALQELD-----PDNPAIAQESKALETMAKNFE 123
             F    +    C     D P  +S L   +E+D      D   ++   +   T+    E
Sbjct: 23  SVFEDAFVDNFDCKDVQ-DMP--KSILSK-EEIDHIIMSKDA--VSGTLRLFWTLLSKQE 76

Query: 124 GASKAF----EANDY----------------RTAMF--YLDRAMDQGVASKTYKLMKAEC 161
              + F       +Y                 T M+    DR  +       Y + + + 
Sbjct: 77  EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP 136

Query: 162 LAHLNR-LQEAQEIAN-----------SILATD--------KQNPDAVF---VRGLCLYY 198
              L + L E +   N           + +A D         +    +F   +   C   
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSP 195

Query: 199 DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258
           +  +++      LL ++ P+     +     KL     +    + +  K       Y   
Sbjct: 196 ETVLEMLQK---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP------YENC 246

Query: 259 LKI-----DARNI---NINSKLL-----HNRATVLFKMGKYNEAIADCTLALEKD----- 300
           L +     +A+     N++ K+L           L      + ++   ++ L  D     
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 301 -PNYL----KALSRR-CKCF-HALGQYKECVIDAEKI---YKMDNSRENHNFLEEAKRLL 350
              YL    + L R         L    E + D       +K  N  +    +E +  +L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 351 KRSEVKDYYKILGV-------------------TKNASSDDIKKAYRKRALVHHPDRHTN 391
           + +E +  +  L V                    K+     + K ++   +   P   T 
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426

Query: 392 -------ATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMED---SGMGGH-AG 440
                    + +   +  L + + + Y I   P      D     ++    S +G H   
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNI---PKTFDSDDLIPPYLDQYFYSHIGHHLKN 483

Query: 441 ANLFEQ-HMFQT-YFD------------PGCRARGSNV----RFQYYQ 470
               E+  +F+  + D                A GS +    + ++Y+
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 1e-08
 Identities = 64/477 (13%), Positives = 136/477 (28%), Gaps = 134/477 (28%)

Query: 14  QYKLKQYSKALKCYSEAISVCPN----VAAYYGNRAACYMMLGMYTYALDDAK------- 62
           + + +Q S   + Y E      N     A Y  +R   Y+ L      L  AK       
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 63  -------LA--VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL----DPDNPAIA 109
                  +A  V L  +    +  +I   + L +  +  + L+ LQ+L    DP+  + +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 110 QESKALETMAKNFEGA-SKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168
             S  ++    + +    +  ++  Y   +  L    +    +K +      C       
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----AKAWNAFNLSC------- 266

Query: 169 QEAQEIANSILAT--DKQNPDAVFVRGLC----------LYYDDKMDL------------ 204
                    IL T   KQ  D +                L  D+   L            
Sbjct: 267 --------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 205 ---AVNHFQLLLKLAP----DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDI--Y 255
               +      L +      D     + +K   +   K     E  +     E  +    
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWK--HVNCDKLTTIIESSL--NVLEPAEYRKM 374

Query: 256 TEALKIDARNININSKLLHNRATVLFKMGKYNEA---IADCT--LALEKDPN----YLKA 306
            + L +   + +I + LL    ++++     ++    +        +EK P      + +
Sbjct: 375 FDRLSVFPPSAHIPTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 307 LSRRCKCFHALGQYK--ECVIDAEKIYKMDNSRENHNF----------------LEEAKR 348
           +    K      +Y     ++D    Y +  + ++ +                 L+  + 
Sbjct: 431 IYLELKV-KLENEYALHRSIVDH---YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486

Query: 349 LLKRSEVKDYY--------KI--LGVTKNASSD------DIKKAYRKRALVHHPDRH 389
             + +  +  +        KI       NAS         +K  Y+     + P   
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDNDPKYE 542

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 3e-07
 Identities = 60/411 (14%), Positives = 126/411 (30%), Gaps = 104/411 (25%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALK-----CYSEAISV----CP--------NVAAYYGN 43
           +L     + +     K K Y   L        ++A +     C          V  +   
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 44  RAACYMMLGMYTYALDDAK----LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ 99
               ++ L  ++  L   +    L   LD R    L R++         P     L  + 
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPREV-LTTN----PRR---LSIIA 334

Query: 100 ELDPDNPAIAQESK--ALETMAKNFEGASKAFEANDYRTAMFYLDRAM---DQGVASKTY 154
           E   D  A     K    + +    E +    E  +YR    +   ++      + +   
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK--MFDRLSVFPPSAHIPTILL 392

Query: 155 KL----MKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDL-- 204
            L    +    +  +       ++    L   +     + +  + L      +++  L  
Sbjct: 393 SLIWFDVIKSDVMVV-----VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 205 -AVNHFQLLLKLAPD-----------------HAKAKETYKRAKLLKAKKEEGNEKFVAG 246
             V+H+ +      D                 H K  E  +R  L +      + +F+  
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQ 505

Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY--- 303
           K           ++ D+   N +  +L+     L ++  Y   I D       DP Y   
Sbjct: 506 K-----------IRHDSTAWNASGSILN----TLQQLKFYKPYICD------NDPKYERL 544

Query: 304 LKALSRRCKCFHALGQYKECVIDAE--KIYKMDNSRENHNFLEEAKRLLKR 352
           + A+      F  L + +E +I ++   + ++    E+    EEA + ++R
Sbjct: 545 VNAILD----F--LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.8 bits (128), Expect = 1e-08
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 20/146 (13%)

Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
           +A +  G   Y     D A+ ++Q  L+L P  A+A   Y        +          G
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW--YNLGNAYYKQ----------G 49

Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
              EA + Y +AL++D R+    ++  +N     +K G Y+EAI     ALE DP   +A
Sbjct: 50  DYDEAIEYYQKALELDPRS----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105

Query: 307 LSRRCKCFHALGQYKECVIDAEKIYK 332
                  ++  G Y E    A + Y+
Sbjct: 106 WYNLGNAYYKQGDYDE----AIEYYQ 127

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.5 bits (122), Expect = 7e-08
 Identities = 37/141 (26%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221
                   EA E     L  D ++ +A +  G   Y     D A+ ++Q  L+L P  A+
Sbjct: 11  YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70

Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
           A   Y        +          G   EA + Y +AL++D R+        +N     +
Sbjct: 71  AW--YNLGNAYYKQ----------GDYDEAIEYYQKALELDPRSAEA----WYNLGNAYY 114

Query: 282 KMGKYNEAIADCTLALEKDPN 302
           K G Y+EAI     ALE DP 
Sbjct: 115 KQGDYDEAIEYYQKALELDPR 135

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.0 bits (113), Expect = 9e-07
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           GN  YK   Y +A++ Y +A+ + P  A  + N    Y   G Y  A++  + A+ LDPR
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

Query: 71  F 71
            
Sbjct: 102 S 102

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 47.0 bits (113), Expect = 9e-07
 Identities = 22/68 (32%), Positives = 33/68 (48%)

Query: 4  AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
          AE     GN  YK   Y +A++ Y +A+ + P  A  + N    Y   G Y  A++  + 
Sbjct: 1  AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 64 AVSLDPRF 71
          A+ LDPR 
Sbjct: 61 ALELDPRS 68

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 355 VKDYYKILGVTKNASS-DDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
            K+  +IL +T+N  +   +K+ +RK  L +HPD+  +           L  ++ EA   
Sbjct: 13  SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---------PFLATKINEAKDF 63

Query: 414 LSDPTKR 420
           L      
Sbjct: 64  LEKRGIS 70

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 17/137 (12%), Positives = 45/137 (32%), Gaps = 13/137 (9%)

Query: 166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET 225
              +   +     +  + QN +   + G    + +    ++  ++  L+L  ++A+    
Sbjct: 24  QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83

Query: 226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK 285
                  +A +             +   +  +AL +D+  I      L   A+  F    
Sbjct: 84  LATVLYYQASQHM---------TAQTRAMIDKALALDSNEITA----LMLLASDAFMQAN 130

Query: 286 YNEAIADCTLALEKDPN 302
           Y +AI      ++ +  
Sbjct: 131 YAQAIELWQKVMDLNSP 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 22/161 (13%), Positives = 47/161 (29%), Gaps = 10/161 (6%)

Query: 87  DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG----ASKAFEANDYRTAMFYLD 142
           +    R  L            +      +    +N E            NDY  ++    
Sbjct: 9   EYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYR 68

Query: 143 RAMDQGVASKTYKLMKAECLAHLN---RLQEAQEIANSILATDKQNPDAVFVRGLCLYYD 199
           +A+     +       A  L +        + + + +  LA D     A+ +     +  
Sbjct: 69  QALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128

Query: 200 DKMDLAVNHFQLLLKLAPDHAKAK---ETYKRAKLLKAKKE 237
                A+  +Q ++ L           E+   AKLL+ + +
Sbjct: 129 ANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD 169

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 23/178 (12%), Positives = 56/178 (31%), Gaps = 18/178 (10%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
            ++ ++  +     +     L+   + I   P  +  +      Y+    Y+ +L   + 
Sbjct: 10  YQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQ 69

Query: 64  AVSLDPRFSKGLIRQIKCNIALGD---APTARSNLKALQELDPDNPAIAQESKALETMAK 120
           A+ L    ++                     R+ +     LD +         AL  +A 
Sbjct: 70  ALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI------TALMLLAS 123

Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVA-SKTYKLMKAECLAHLNRLQEAQEIANS 177
           +      AF   +Y  A+    + MD         +L+++  +     LQ   ++ + 
Sbjct: 124 D------AFMQANYAQAIELWQKVMDLNSPRINRTQLVES--INMAKLLQRRSDLEHH 173

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 29/168 (17%), Positives = 59/168 (35%), Gaps = 23/168 (13%)

Query: 199 DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA 258
               +  +   Q  ++  P +++         LL      G           +   Y +A
Sbjct: 23  QQNPEAQLQALQDKIRANPQNSEQ------WALL------GEYYLWQNDYSNSLLAYRQA 70

Query: 259 LKIDARNININSKLLHNRATVLFKMGKYN---EAIADCTLALEKDPNYLKALSRRCKCFH 315
           L++   N  +        ATVL+     +   +  A    AL  D N + AL        
Sbjct: 71  LQLRGENAEL----YAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126

Query: 316 ALGQYKECVIDAEKIYKMDNSRENH----NFLEEAKRLLKRSEVKDYY 359
               Y + +   +K+  +++ R N       +  AK L +RS+++ ++
Sbjct: 127 MQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHHH 174

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 16/127 (12%)

Query: 192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA 251
            G   Y     D A+ ++Q  L+L P++A+A   Y        +          G   EA
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAW--YNLGNAYYKQ----------GDYDEA 62

Query: 252 FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC 311
            + Y +AL++D  N        +N     +K G Y+EAI     ALE DPN  +A     
Sbjct: 63  IEYYQKALELDPNNAEA----WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118

Query: 312 KCFHALG 318
                 G
Sbjct: 119 NAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 47.8 bits (115), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 8/87 (9%)

Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
           G   EA + Y +AL++D  N        +N     +K G Y+EAI     ALE DPN  +
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEA----WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78

Query: 306 ALSRRCKCFHALGQYKECVIDAEKIYK 332
           A       ++  G Y E    A + Y+
Sbjct: 79  AWYNLGNAYYKQGDYDE----AIEYYQ 101

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           GN  YK   Y +A++ Y +A+ + PN A  + N    Y   G Y  A++  + A+ LDP 
Sbjct: 50  GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

Query: 71  FSK 73
            ++
Sbjct: 110 NAE 112

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.9 bits (105), Expect = 8e-06
 Identities = 20/63 (31%), Positives = 33/63 (52%)

Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
          GN  YK   Y +A++ Y +A+ + PN A  + N    Y   G Y  A++  + A+ LDP 
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 71 FSK 73
           ++
Sbjct: 76 NAE 78

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
           N     +K G Y+EAI     ALE DPN  +A       ++  G Y E    A + Y+
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE----AIEYYQ 67

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 21/123 (17%), Positives = 43/123 (34%), Gaps = 19/123 (15%)

Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDAR--------NININSKLLHNRATVLFKMGKYN 287
             +   + VAG+  EA      A++I           +   ++      A  L  +  ++
Sbjct: 15  LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74

Query: 288 EAIADCTLALEKDPN-----------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
           EA+     AL                ++ A+  R      LG+  E + + +K+ +M   
Sbjct: 75  EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134

Query: 337 REN 339
           R+ 
Sbjct: 135 RKG 137

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 13/91 (14%), Positives = 33/91 (36%)

Query: 269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE 328
           +    +  A    K    + A+A     +E DP+Y+       K +  L +  + +    
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 329 KIYKMDNSRENHNFLEEAKRLLKRSEVKDYY 359
           +  ++         L E +    ++E  +++
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 11/61 (18%), Positives = 19/61 (31%)

Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
               K    S+AL  + E +   P+    Y +    Y  L     A+D     + +   
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

Query: 71 F 71
           
Sbjct: 74 E 74

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 36/275 (13%), Positives = 87/275 (31%), Gaps = 28/275 (10%)

Query: 158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKM-DLAVNHFQLLLKLA 216
               L    R + A ++    +  +  N      R + L    K     +N+   +++  
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 217 PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR 276
           P + +    + R  L++                +  +   + L  DA+N +       +R
Sbjct: 163 PKNYQV--WHHRRVLVEW----------LRDPSQELEFIADILNQDAKNYHA----WQHR 206

Query: 277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS 336
             V+ +   ++  +      L++D       ++R         Y +  +   ++      
Sbjct: 207 QWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM 266

Query: 337 ----RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA 392
                 N +     K +L+   +  Y  +L    +         Y    LV   D + + 
Sbjct: 267 IKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLV---DIYEDM 322

Query: 393 TQAQKLEQEKLFKEVGEAYGILS---DPTKRSRYD 424
            + Q   +E +  +  E   IL+   D  ++  + 
Sbjct: 323 LENQCDNKEDILNKALELCEILAKEKDTIRKEYWR 357

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 20/148 (13%), Positives = 50/148 (33%), Gaps = 15/148 (10%)

Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
           D        L  D++ + A    +  ++L   +      + R  LLK+ +++        
Sbjct: 98  DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT--VWHFRRVLLKSLQKD-------- 147

Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
              E  +  T  ++   +N  +     H+R  ++  +   ++ +      L +D     A
Sbjct: 148 -LHEEMNYITAIIEEQPKNYQV----WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202

Query: 307 LSRRCKCFHALGQYKECVIDAEKIYKMD 334
              R         +   +   +++ K D
Sbjct: 203 WQHRQWVIQEFKLWDNELQYVDQLLKED 230

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 43.5 bits (102), Expect = 8e-05
 Identities = 36/323 (11%), Positives = 78/323 (24%), Gaps = 68/323 (21%)

Query: 30  AISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP 89
            I         Y    A          A    + A+ L+         +     +L    
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--- 145

Query: 90  TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV 149
                 K L E              +  +    E   K ++   +R              
Sbjct: 146 ------KDLHE-------------EMNYITAIIEEQPKNYQVWHHR-------------- 172

Query: 150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHF 209
                       +  L    +  E    IL  D +N  A   R   +      D  + + 
Sbjct: 173 ---------RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 223

Query: 210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ 269
             LLK    +       +R  ++       +   +    +       E +K+   N +  
Sbjct: 224 DQLLKEDVRNNSVW--NQRYFVISNTTGYNDRAVL----EREVQYTLEMIKLVPHNES-- 275

Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
                N    + +    ++        L+  P++           + +      ++D  +
Sbjct: 276 ---AWNYLKGILQDRGLSKYPNLLNQLLDLQPSH--------SSPYLI----AFLVDIYE 320

Query: 330 IYKMDNSRENHNFLEEAKRLLKR 352
               +      + L +A  L + 
Sbjct: 321 DMLENQCDNKEDILNKALELCEI 343

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 35/300 (11%), Positives = 78/300 (26%), Gaps = 62/300 (20%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM-YTYALDDAKLAVSLDP 69
                + ++  +A K   +AI +       +  R      L       ++     +   P
Sbjct: 104 RAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 163

Query: 70  RFSKGLI-RQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA 128
           +  +    R++                  ++ L   +  +   +  L   AKN       
Sbjct: 164 KNYQVWHHRRV-----------------LVEWLRDPSQELEFIADILNQDAKN------- 199

Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188
           + A  +R                          +          +  + +L  D +N   
Sbjct: 200 YHAWQHR-----------------------QWVIQEFKLWDNELQYVDQLLKEDVRNNSV 236

Query: 189 VFVRGLCLY------YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK 242
              R   +           ++  V +   ++KL P +  A        +L+ +       
Sbjct: 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA--WNYLKGILQDRGLSKYPN 294

Query: 243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT-LALEKDP 301
            +     +  D+             ++            K    N+A+  C  LA EKD 
Sbjct: 295 LL----NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
           G   +A   Y +A+    +  ++ ++      +    +G+Y +A A     +++ PN+  
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDL-AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 306 ALSRRCKCFHALGQYKE 322
                    + LG+Y++
Sbjct: 63  LRVFYAMVLYNLGRYEQ 79

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 17  LKQYSKALKCYSEAISVC---PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK 73
           L   ++A+  Y +AI+      ++A  Y    + +  LG Y  A       V   P    
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 74  GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
             +        LG        L  +     D+  I    +A+   A 
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYAD 109

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 13/59 (22%), Positives = 21/59 (35%)

Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP 69
          G+T   L +Y KA    +  +   PN  A     A     LG Y   ++     ++   
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETS 92

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 18/105 (17%)

Query: 218 DHAKAKETYKRAKLLKAKKEE--------GNEKFVAGKNQEAFDIYTEALKIDARNININ 269
             A+A   Y++A     + ++        G+     G+ ++A  +    +K    +  + 
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL- 63

Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------YLKALS 308
                  A VL+ +G+Y + +      + +  +      Y +A+ 
Sbjct: 64  ---RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL 105

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 8/84 (9%)

Query: 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
           Q   +     L     N      L         +  +++ A+     AL+ DP Y  A  
Sbjct: 2   QAITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWK 57

Query: 309 RRCKCFHALGQYKECVIDAEKIYK 332
              K     G        A + ++
Sbjct: 58  WLGKTLQGQGDRAG----ARQAWE 77

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 12/98 (12%)

Query: 168 LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK 227
           +Q   E   ++LA    N    F  G      ++ D A+ H +  L   P ++ A     
Sbjct: 1   MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA--WKW 58

Query: 228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN 265
             K L+            G    A   +   L      
Sbjct: 59  LGKTLQG----------QGDRAGARQAWESGLAAAQSR 86

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 18/119 (15%), Positives = 32/119 (26%), Gaps = 16/119 (13%)

Query: 185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV 244
             +     GL +     +  A   F+ + +  P+  +A                      
Sbjct: 16  YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAW--RSLGLTQAE---------- 63

Query: 245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
             K+  A      A  +D ++I +        A         N A+A     L   P Y
Sbjct: 64  NEKDGLAIIALNHARMLDPKDIAV----HAALAVSHTNEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 11/62 (17%), Positives = 23/62 (37%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
           G TQ + ++   A+   + A  + P   A +   A  +        AL   +  +   P+
Sbjct: 58  GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

Query: 71  FS 72
           + 
Sbjct: 118 YE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 17/107 (15%), Positives = 33/107 (30%)

Query: 2   LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDA 61
           +  E   E+G +  KL   ++A   +       P     + +             A+   
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 62  KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108
             A  LDP+           +    +A  A ++L+A     P    +
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 18/107 (16%), Positives = 30/107 (28%), Gaps = 12/107 (11%)

Query: 156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL 215
           + +   +  L  L EA     ++   + +  +A    GL    ++K  LA+        L
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID 262
            P           A L  +   E N          A       L   
Sbjct: 81  DPKDIAV-----HAALAVSHTNEHNA-------NAALASLRAWLLSQ 115

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 237 EEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLA 296
           +   E    G  + A     E L+ +        +  +       K+G + +A+ +   A
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSA 61

Query: 297 LEKDPNYLKALSRR 310
           +E +P+     +R+
Sbjct: 62  IELNPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 1/64 (1%)

Query: 9  EDGNTQYKLKQYSKALKCYSEAISVCPNVAAY-YGNRAACYMMLGMYTYALDDAKLAVSL 67
          +             AL+   E +   P      Y      Y  LG +  AL++ + A+ L
Sbjct: 5  KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 68 DPRF 71
          +P  
Sbjct: 65 NPDS 68

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 17/173 (9%), Positives = 52/173 (30%), Gaps = 12/173 (6%)

Query: 167 RLQEAQEIANSILATDKQNPDAV--FVRGLCLYYD---DKMDLAVNHFQLLLKLAPDHAK 221
                Q +  ++          +  F +            ++ A      +++ +P+   
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234

Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
           A+       +++  +   +EK    +           + +    +N  S +   +A    
Sbjct: 235 ARAEKALVDIVRHSQHPLDEK----QLAALNTEIDNIVTLP--ELNNLSIIYQIKAVSAL 288

Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
             GK +E+       ++ + ++L       K +   G  +E        + + 
Sbjct: 289 VKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLR 340

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
          GN  YK   Y +A++ Y +A+ + PN A  + N    Y   G Y  A++  + A+ LDP 
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75

Query: 71 F 71
           
Sbjct: 76 N 76

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 40.8 bits (97), Expect = 6e-05
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 14/66 (21%)

Query: 246 GKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD 300
           G   EA + Y +AL++     +A           N     +K G Y+EAI     ALE D
Sbjct: 23  GDYDEAIEYYQKALELDPNNAEAWY---------NLGNAYYKQGDYDEAIEYYQKALELD 73

Query: 301 PNYLKA 306
           PN  +A
Sbjct: 74  PNNAEA 79

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 275 NRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
           N     +K G Y+EAI     ALE DPN  +A       ++  G Y E    A + Y+
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE----AIEYYQ 67

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.1 bits (90), Expect = 5e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG 52
          GN  YK   Y +A++ Y +A+ + PN A    N        G
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 47/340 (13%), Positives = 93/340 (27%), Gaps = 72/340 (21%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVC----PNVAAYYGNRAACYMMLGMYTYALDDAKLAVS 66
           G    K       +  +  A+ V       ++A Y      Y  L  Y  AL+     ++
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75

Query: 67  LDPRFS-KGLIRQIKCNIA-----LGDAPTARSNL-KALQ--ELDPDNPAIAQ------- 110
           L      +    +   N+      LG+   A     + L       D    A+       
Sbjct: 76  LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135

Query: 111 ----ESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN 166
               + K+         G       +  + A+ + +                   L+ + 
Sbjct: 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN-----------------LSLVT 178

Query: 167 RLQEAQEIANS------ILATDKQNPDAV--FVRGLCLY--YDDKMDLAVNHFQL--LLK 214
            L +      +               DAV    + L +   + DK      +  L     
Sbjct: 179 ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238

Query: 215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIYTEALKI 261
              +   A E YK+   L   ++  +    A                ++A D + + L I
Sbjct: 239 FLGEFETASEYYKKT--LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296

Query: 262 DARNININSKL---LHNRATVLFKMGKYNEAIADCTLALE 298
            A+ +N          +       +G +++A+      LE
Sbjct: 297 -AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 47/346 (13%), Positives = 89/346 (25%), Gaps = 84/346 (24%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVC----PNVAAYYGNRAACYMMLG-------MYTYAL- 58
           G    K       +  +  A+ V       ++A Y      Y  L         + + L 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 59  ------DDAKLAVSLDPRFSKGLIRQIKCNIA-----LGDAPTARSNL-KALQELDPDNP 106
                 D    A +               N+      LG+   A     + L        
Sbjct: 72  LARTIGDQLGEAKASG-------------NLGNTLKVLGNFDEAIVCCQRHLD------- 111

Query: 107 AIAQESKALETMAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVASKTYKLMKA-----E 160
            I++E       A+        + A           D            +   A     E
Sbjct: 112 -ISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ--AAVDLYEE 168

Query: 161 CLAHLNRLQEAQEIANS------ILATDKQNPDAV--FVRGLCLY--YDDKMDLAVNHFQ 210
            L+ +  L +      +               DAV    + L +   + DK      +  
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228

Query: 211 L--LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-------------GKNQEAFDIY 255
           L        +   A E YK+   L   ++  +    A                ++A D +
Sbjct: 229 LGNAYIFLGEFETASEYYKKT--LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 286

Query: 256 TEALKIDARNININS---KLLHNRATVLFKMGKYNEAIADCTLALE 298
            + L I A+ +       +   +       +G +++A+      LE
Sbjct: 287 LKHLAI-AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 20/147 (13%)

Query: 83  IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLD 142
            A G+   A   L+A      ++                +  A     A  +   +  + 
Sbjct: 113 AAQGNYADAMEALEAAPVAGSEHLV-------------AWMKAVVYGAAERWTDVIDQVK 159

Query: 143 RAM---DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGLCL 196
            A    D+ +A     +      A+L    EA+        +           +   +  
Sbjct: 160 SAGKWPDKFLAGAA-GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMAR 218

Query: 197 YYDDKMDLAVNHFQLLLKLAPDHAKAK 223
                   AV   + L    P+   A 
Sbjct: 219 RSQGNESAAVALLEWLQTTHPEPKVAA 245

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 33/259 (12%), Positives = 71/259 (27%), Gaps = 27/259 (10%)

Query: 18  KQYSKALKCYSEAISVC-----------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVS 66
           ++ S+A +  ++A                + A+ Y   A  +        A D       
Sbjct: 5   QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64

Query: 67  LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS 126
                ++ L    K     G        +    +       +  E+   +T A   + A 
Sbjct: 65  AHAN-NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123

Query: 127 KAFEANDYRTAMFYLDRAMDQG-------VASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
           K  E  D   A+    +A            A++      +  L    +  EA        
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKA-SRLLVRQQKFDEAAASLQKEK 182

Query: 180 ATDKQNPD------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK 233
           +  K+  +          + L   +      A    +    + P  + +++      LL+
Sbjct: 183 SMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI-PGFSGSEDCAALEDLLQ 241

Query: 234 AKKEEGNEKFVAGKNQEAF 252
           A  E+  E+ +        
Sbjct: 242 AYDEQDEEQLLRVCRSPLV 260

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 39/319 (12%), Positives = 78/319 (24%), Gaps = 71/319 (22%)

Query: 10  DGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           +  +   L         +              ++              G     +   + 
Sbjct: 14  ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQA 73

Query: 64  AVSLDPRFSKGLIRQIKCNIA-----LGDAPTARSNL-KALQELDPDNPAIAQESKALET 117
           A+          +  I   +      LGD   A       L         +A+       
Sbjct: 74  AIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT--------LAKSMNDRLG 124

Query: 118 MAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVASKTY-KLMKAECLAHLNRLQEAQEIA 175
            AK+        +    +  A    +R +   +A +   +L +   L +L          
Sbjct: 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLT--LARQLGDRLSEGRALYNL---------- 172

Query: 176 NSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK 235
                            G   +   K     N  +    +     +A E Y+    LK  
Sbjct: 173 -----------------GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN--LKLM 213

Query: 236 KEEGNEKFVA-------------GKNQEAFDIYTEALKIDARNININS---KLLHNRATV 279
           ++ G+                  G  Q A + + E L+I AR     +   +   N    
Sbjct: 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-AREFGDRAAERRANSNLGNS 272

Query: 280 LFKMGKYNEAIADCTLALE 298
              +G++ +A       L 
Sbjct: 273 HIFLGQFEDAAEHYKRTLA 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	470
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	100.0
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	100.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.98
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.98
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.98
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.97
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.96
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.96
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.95
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.95
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.95
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.94
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.93
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.93
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.93
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.92
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.91
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.91
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.9
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.89
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.88
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.88
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.88
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.87
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.87
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.87
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.87
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.87
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.87
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.85
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.85
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.82
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.81
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.79
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.79
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.77
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.76
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.74
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.73
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.72
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.71
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.71
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.71
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.7
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.7
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.7
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.7
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.68
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.68
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.68
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.68
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.67
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.65
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.64
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.64
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.64
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.63
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.63
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.63
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.62
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.62
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.62
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.62
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.62
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.62
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.62
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.61
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.61
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.61
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.61
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.6
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.6
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.59
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.59
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.58
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.58
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.58
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.58
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.56
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.56
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.56
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.56
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.55
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.55
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.55
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.54
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.54
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.53
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.53
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.53
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.53
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.52
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.51
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.51
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.5
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.49
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.49
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.49
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.48
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.48
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.47
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.47
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.46
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.46
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.45
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.45
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.42
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.42
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.41
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.4
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.4
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.39
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.36
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.31
2guz_A	71	Mitochondrial import inner membrane translocase su	99.28
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.27
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.24
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.24
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.23
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.21
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.17
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.13
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.12
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.03
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	99.0
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.98
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.97
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.94
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.93
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.92
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.91
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.84
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.78
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.78
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.78
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.71
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.7
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.66
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.54
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.34
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.29
2guz_B	65	Mitochondrial import inner membrane translocase su	98.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.11
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.06
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.98
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.98
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.9
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.76
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.71
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.66
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.64
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.64
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	97.5
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.27
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	97.23
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	97.12
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	97.05
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	97.04
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.99
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.9
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.8
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.65
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.63
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	96.48
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.43
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.34
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.83
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.44
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.39
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	95.01
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.0
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.87
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.86
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.33
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	94.16
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.93
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.27
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.15
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.81
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.77
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	92.57
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.9
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	86.68
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	80.58

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=1.5e-54  Score=420.40  Aligned_cols=423  Identities=27%  Similarity=0.387  Sum_probs=399.5

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  103 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNP---AIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK  158 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  158 (470)
                      |..+|++++|+..|+++++++|++.   .++..++.++.....+..+..++..|++++|+..+++++...|.+..++..+
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  183 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELR  183 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9999999999999999999999999   9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  238 (470)
                      |.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|++...+..+..+.........
T Consensus       184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  263 (450)
T 2y4t_A          184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES  263 (450)
T ss_dssp             HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998888777777778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |.++...|++++|+.+|++++...|+++.....++..+|.++...|++++|+..+++++.++|+++.++..+|.++...|
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999776556789999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhh
Q psy16214        319 QYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQK  397 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~  397 (470)
                      ++++|+..|+++++++|+ ..+...+..+....+.....++|+.+|+...++..+++++|+++++++|||+.+.  +..+
T Consensus       344 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~--~~~~  421 (450)
T 2y4t_A          344 MYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN--EEEK  421 (450)
T ss_dssp             CHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS--HHHH
T ss_pred             CHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC--chHH
Confidence            999999999999999998 7788899999999999999999999999999999999999999999999999876  4457


Q ss_pred             HHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214        398 LEQEKLFKEVGEAYGILSDPTKRSRYDRG  426 (470)
Q Consensus       398 ~~~~~~~~~i~~ay~~l~d~~~~~~yd~~  426 (470)
                      +.++++|+.|++||++|||++||.+||+|
T Consensus       422 ~~a~~~~~~i~~ay~~L~d~~~r~~yd~g  450 (450)
T 2y4t_A          422 KKAEKKFIDIAAAKEVLSDPEMRKKFDDG  450 (450)
T ss_dssp             HHHHHHHHHHHHHHHHSSGGGGC------
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHhccCC
Confidence            78999999999999999999999999987

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1.4e-41  Score=318.65  Aligned_cols=353  Identities=22%  Similarity=0.310  Sum_probs=338.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      +++.++.+|..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDP---DNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA  159 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  159 (470)
                      ...|++++|+..++++++..|   +++.++..++.+......+..|..+...|++++|+..+++++...|.++.++..+|
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  161 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA  161 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            999999999999999999999   99999999999998888999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|++..++..+..+..+......|
T Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a  241 (359)
T 3ieg_A          162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESA  241 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988888887788888889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      .++...|++++|+..+++++...|+++.....++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|+
T Consensus       242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (359)
T 3ieg_A          242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM  321 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999998766567788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhcccc
Q psy16214        320 YKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKRSEV  355 (470)
Q Consensus       320 ~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~~~~  355 (470)
                      +++|+..|+++++++|+ ..+...+.++...++++++
T Consensus       322 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  358 (359)
T 3ieg_A          322 YDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK  358 (359)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcc
Confidence            99999999999999998 7778888888888776543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.5e-38  Score=301.90  Aligned_cols=319  Identities=17%  Similarity=0.094  Sum_probs=241.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214          9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA   88 (470)
Q Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   88 (470)
                      .+|..++..|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++
T Consensus         4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            34566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH----------------------HHhcCCHHHHHHHHHHHHH
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK----------------------AFEANDYRTAMFYLDRAMD  146 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~----------------------~~~~~~~~~A~~~~~~~l~  146 (470)
                      ++|+..|++++.++|++..++..++.++...+++..|..                      +...|++++|+..+++++.
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            666666666666666666666666665544433333322                      3445888888888888888


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        147 QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       147 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      ..|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..+++++..+|++..++..+
T Consensus       164 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  243 (388)
T 1w3b_A          164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL  243 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888887777776


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214        227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA  306 (470)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (470)
                                  |.++...|++++|+..|++++...|++    +.++..+|.++...|++++|+..++++++++|+++.+
T Consensus       244 ------------~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  307 (388)
T 1w3b_A          244 ------------ACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             ------------HHHHHHTTCHHHHHHHHHHHHHTCSSC----HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ------------HHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence                        888888888888888888888888884    4568888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHH
Q psy16214        307 LSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFL  343 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l  343 (470)
                      +..+|.++...|++++|+..+++++++.|+ ......+
T Consensus       308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  345 (388)
T 1w3b_A          308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL  345 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            888888888888888888888888888886 3333333

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=4.4e-39  Score=305.56  Aligned_cols=328  Identities=18%  Similarity=0.199  Sum_probs=289.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      ++..+..+|..++..|++++|+..++.++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+|.++
T Consensus        32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  111 (388)
T 1w3b_A           32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL  111 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence            45667777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH----------------------HHhcCCHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK----------------------AFEANDYRTAMFY  140 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~----------------------~~~~~~~~~A~~~  140 (470)
                      ...|++++|+..|+++++.+|++..++..++.++...+++..|..                      +...|++++|+..
T Consensus       112 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  191 (388)
T 1w3b_A          112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH  191 (388)
T ss_dssp             HHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            888888888888888888888887777777777765555544443                      3456999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214        141 LDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA  220 (470)
Q Consensus       141 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  220 (470)
                      +++++..+|+...++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++
T Consensus       192 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  271 (388)
T 1w3b_A          192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP  271 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                      .++..+            |.++...|++++|+..|+++++..|.+    ..++..+|.++...|++++|+..++++++++
T Consensus       272 ~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  335 (388)
T 1w3b_A          272 DAYCNL------------ANALKEKGSVAEAEDCYNTALRLCPTH----ADSLNNLANIKREQGNIEEAVRLYRKALEVF  335 (388)
T ss_dssp             HHHHHH------------HHHHHHHSCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhhCccc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            988888            999999999999999999999999984    5679999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q psy16214        301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEA  346 (470)
Q Consensus       301 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~  346 (470)
                      |+++.++..+|.++...|++++|+..|+++++++|+ .++...+..+
T Consensus       336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~  382 (388)
T 1w3b_A          336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT  382 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHH
Confidence            999999999999999999999999999999999997 5555555443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-35  Score=286.31  Aligned_cols=317  Identities=18%  Similarity=0.180  Sum_probs=205.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      ..++.++.+|..++..|+|++|+..|++++..+| ++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~   82 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            3678999999999999999999999999999999 589999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH--------------------------------------------
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALET--------------------------------------------  117 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~--------------------------------------------  117 (470)
                      +..+|++++|+..|++++...|.+............                                            
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999999998855332211111000                                            


Q ss_pred             -----------------------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----h--C-------CCCHHHHHH
Q psy16214        118 -----------------------MAKNFEGASKAFE---ANDYRTAMFYLDRAMD-----Q--G-------VASKTYKLM  157 (470)
Q Consensus       118 -----------------------~~~~~~~a~~~~~---~~~~~~A~~~~~~~l~-----~--~-------p~~~~~~~~  157 (470)
                                             ....+..+...+.   .|++++|+..+++++.     .  .       |....++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence                                   1111222222332   4555566665555555     3  2       233345555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE  237 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  237 (470)
                      +|.++...|++++|+..+++++...|. +.++..+|.++...|++++|+..+++++..+|++..++..+           
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l-----------  310 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR-----------  310 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHH-----------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHH-----------
Confidence            555555566666666666665555555 55555555555555555555555555555555555555444           


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  317 (470)
                       |.++...|++++|+..+++++...|.+.    .++..+|.++...|++++|+..++++++..|+++.++..+|.++...
T Consensus       311 -~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  385 (514)
T 2gw1_A          311 -GQMNFILQNYDQAGKDFDKAKELDPENI----FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK  385 (514)
T ss_dssp             -HHHHHHTTCTTHHHHHHHHHHHTCSSCS----HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred             -HHHHHHhCCHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence             5555555555555555555555544422    23444555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q psy16214        318 GQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       318 g~~~~A~~~~~~a~~~~p~  336 (470)
                      |++++|+..+++++++.|+
T Consensus       386 ~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          386 NDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             TCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhhhc
Confidence            5555555555555544443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=2.8e-35  Score=291.48  Aligned_cols=321  Identities=20%  Similarity=0.231  Sum_probs=217.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.++.+|..++..|+|++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCC-----------------------------------------------------------
Q psy16214         83 IALGDAPTARSNLKALQELDP-----------------------------------------------------------  103 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p-----------------------------------------------------------  103 (470)
                      ..+|++++|+..|+ ++...|                                                           
T Consensus       104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            99999999988774 444444                                                           


Q ss_pred             ---------------------------------------------------CChHHHH-------HHHHHHHHHHHHHHH
Q psy16214        104 ---------------------------------------------------DNPAIAQ-------ESKALETMAKNFEGA  125 (470)
Q Consensus       104 ---------------------------------------------------~~~~~~~-------~l~~~~~~~~~~~~a  125 (470)
                                                                         +++..+.       .++.++...+++..|
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A  262 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA  262 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence                                                               3332222       122222111122222


Q ss_pred             HHH---------------------HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214        126 SKA---------------------FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ  184 (470)
Q Consensus       126 ~~~---------------------~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  184 (470)
                      ...                     ...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.
T Consensus       263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~  342 (537)
T 3fp2_A          263 QVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE  342 (537)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence            211                     12255555555555555555555555555555555555555555555555555555


Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214        185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  264 (470)
                      ++.++..+|.++...|++++|+..+++++...|++..++..+            |.++...|++++|+..|++++...|+
T Consensus       343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF------------AEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            555555555555555555555555555555555555555544            67777777777777777777766665


Q ss_pred             Cccch--HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        265 NININ--SKLLHNRATVLFKM----------GKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       265 ~~~~~--~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      +....  ...+..+|.++...          |++++|+..++++++.+|+++.++..+|.++..+|++++|+..|+++++
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            44321  22355566677766          7777777777777777777777777777777777777777777777777


Q ss_pred             cCCC
Q psy16214        333 MDNS  336 (470)
Q Consensus       333 ~~p~  336 (470)
                      +.|+
T Consensus       491 ~~~~  494 (537)
T 3fp2_A          491 LART  494 (537)
T ss_dssp             HC--
T ss_pred             hCCC
Confidence            7776

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=4e-34  Score=264.78  Aligned_cols=291  Identities=14%  Similarity=0.050  Sum_probs=270.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      +++.+..+|..++..|+|++|+..|++++..+|.++.++..++.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  100 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY  100 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcC-ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214         83 IALG-DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC  161 (470)
Q Consensus        83 ~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  161 (470)
                      ...| ++++|+..++++++++|+++.++..++.+            +...|++++|+..+++++...|.....+..+|.+
T Consensus       101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~------------~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  168 (330)
T 3hym_B          101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHS------------FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE  168 (330)
T ss_dssp             HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHH------------HHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHH------------HHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            9999 99999999999999999999998777666            6677999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhC---------CChHHHHHHHHHHHHH
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLA---------PDHAKAKETYKRAKLL  232 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---------p~~~~~~~~~~~~~~~  232 (470)
                      +...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...         |....++..+      
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------  242 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL------  242 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHH------
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHH------
Confidence            9999999999999999999999999999999999999999999999999999976         5556677777      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                            |.++...|++++|+.++++++...|++    ..++..+|.++..+|++++|+.+++++++++|+++.++..++.
T Consensus       243 ------a~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  312 (330)
T 3hym_B          243 ------GHVCRKLKKYAEALDYHRQALVLIPQN----ASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH  312 (330)
T ss_dssp             ------HHHHHHTTCHHHHHHHHHHHHHHSTTC----SHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHH
T ss_pred             ------HHHHHHhcCHHHHHHHHHHHHhhCccc----hHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHH
Confidence                  999999999999999999999999984    4569999999999999999999999999999999999999999


Q ss_pred             HH-HHhCCHH
Q psy16214        313 CF-HALGQYK  321 (470)
Q Consensus       313 ~~-~~~g~~~  321 (470)
                      ++ ...|+.+
T Consensus       313 ~~~~~~g~~~  322 (330)
T 3hym_B          313 CIEMYIGDSE  322 (330)
T ss_dssp             HHHTTTTC--
T ss_pred             HHHHHhCchh
Confidence            98 5666643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.6e-33  Score=280.09  Aligned_cols=329  Identities=14%  Similarity=0.029  Sum_probs=280.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHH------------------------------------
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAA------------------------------------   46 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~------------------------------------   46 (470)
                      ++..|..+|..+...|++++|+..|+++++.+|+++.++..++.                                    
T Consensus       199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  278 (597)
T 2xpi_A          199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK  278 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence            46789999999999999999999999999999987776665543                                    


Q ss_pred             --HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q psy16214         47 --CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG  124 (470)
Q Consensus        47 --~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~  124 (470)
                        +|...|++++|+..++++++. |.+..++..++.++...|++++|+..|+++++..|++..++..++.++...+.+..
T Consensus       279 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  357 (597)
T 2xpi_A          279 LNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK  357 (597)
T ss_dssp             SCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence              233556777777777777766 56677777777777777777777777777777777777777666666655444443


Q ss_pred             HH----------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Q psy16214        125 AS----------------------KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD  182 (470)
Q Consensus       125 a~----------------------~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~  182 (470)
                      |.                      .+...|++++|+..++++++..|.+..++..++.++...|++++|+..+++++...
T Consensus       358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33                      34556999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                      |.+..++..+|.++...|++++|+..|+++++..|.++.++..+            |.++...|++++|+..|+++++..
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~  505 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL------------GVVAFNKSDMQTAINHFQNALLLV  505 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999888887            999999999999999999999985


Q ss_pred             cc---CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hh
Q psy16214        263 AR---NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RE  338 (470)
Q Consensus       263 p~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~  338 (470)
                      |+   ++.....++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...|++++|+..|+++++++|+ ..
T Consensus       506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~  585 (597)
T 2xpi_A          506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM  585 (597)
T ss_dssp             HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence            43   333236789999999999999999999999999999999999999999999999999999999999999997 44


Q ss_pred             HHHHHH
Q psy16214        339 NHNFLE  344 (470)
Q Consensus       339 ~~~~l~  344 (470)
                      ....+.
T Consensus       586 ~~~~l~  591 (597)
T 2xpi_A          586 ASDLLK  591 (597)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=3.2e-33  Score=270.43  Aligned_cols=310  Identities=17%  Similarity=0.117  Sum_probs=280.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH---HHHHHH-
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS---KGLIRQ-   78 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l-   78 (470)
                      ++..++.+|.+++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.   .++..+ 
T Consensus        59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  138 (450)
T 2y4t_A           59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI  138 (450)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999999999999988   776555 


Q ss_pred             -----------HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         79 -----------IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        79 -----------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                                 |.++...|++++|+..|+++++..|.+..++..++.+            +...|++++|+..+++++..
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g~~~~A~~~~~~~~~~  206 (450)
T 2y4t_A          139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC------------FIKEGEPRKAISDLKAASKL  206 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH------------HHHCCCHHHHHHHHHHHHHh
Confidence                       6779999999999999999999999999988766666            67789999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHH------------HHHHhccCChHHHHHHHHHHHhh
Q psy16214        148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVR------------GLCLYYDDKMDLAVNHFQLLLKL  215 (470)
Q Consensus       148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~l~~  215 (470)
                      +|.++.++..+|.++...|++++|+..+++++...|++...+..+            |.++...|++++|+..|++++..
T Consensus       207 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~  286 (450)
T 2y4t_A          207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT  286 (450)
T ss_dssp             HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999887766            99999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214        216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL  295 (470)
Q Consensus       216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (470)
                      .|+++.....        .+...|.++...|++++|+..+++++...|+    ...++..+|.++...|++++|+..+++
T Consensus       287 ~p~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~A~~~~~~  354 (450)
T 2y4t_A          287 EPSIAEYTVR--------SKERICHCFSKDEKPVEAIRVCSEVLQMEPD----NVNALKDRAEAYLIEEMYDEAIQDYET  354 (450)
T ss_dssp             CCSSHHHHHH--------HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcchHHHHH--------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9997652211        1122399999999999999999999999998    457799999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHH------------HHHhC-----CHHHHHHHHHH-HHhcCCC
Q psy16214        296 ALEKDPNYLKALSRRCKC------------FHALG-----QYKECVIDAEK-IYKMDNS  336 (470)
Q Consensus       296 al~~~p~~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-a~~~~p~  336 (470)
                      +++++|+++.++..++.+            |..+|     +.+++.+.|++ +++..|+
T Consensus       355 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd  413 (450)
T 2y4t_A          355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD  413 (450)
T ss_dssp             HHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred             HHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence            999999999999999955            44445     56778888886 8888886

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=276.93  Aligned_cols=328  Identities=14%  Similarity=0.093  Sum_probs=238.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----------
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-----------   71 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----------   71 (470)
                      ++..+..+|.+++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|++++..+|.+           
T Consensus        38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  117 (514)
T 2gw1_A           38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN  117 (514)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred             cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999887632           


Q ss_pred             --------------------------------------------------------------------HHHHHHHHHHHH
Q psy16214         72 --------------------------------------------------------------------SKGLIRQIKCNI   83 (470)
Q Consensus        72 --------------------------------------------------------------------~~~~~~la~~~~   83 (470)
                                                                                          ..+++.+|.++.
T Consensus       118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (514)
T 2gw1_A          118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL  197 (514)
T ss_dssp             HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence                                                                                666777788777


Q ss_pred             H---cCChHHHHHHHHHHHh-----c--CCCC-------hHHHHHHHHHHHHHHHHHHHH--------------------
Q psy16214         84 A---LGDAPTARSNLKALQE-----L--DPDN-------PAIAQESKALETMAKNFEGAS--------------------  126 (470)
Q Consensus        84 ~---~g~~~~A~~~~~~~l~-----~--~p~~-------~~~~~~l~~~~~~~~~~~~a~--------------------  126 (470)
                      .   .|++++|+..++++++     +  .|++       ..++..++.++...+.+..|.                    
T Consensus       198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~  277 (514)
T 2gw1_A          198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMA  277 (514)
T ss_dssp             SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHH
Confidence            6   8889999999999988     5  5544       334444444433322222222                    


Q ss_pred             -HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHH
Q psy16214        127 -KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA  205 (470)
Q Consensus       127 -~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A  205 (470)
                       .+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|
T Consensus       278 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  357 (514)
T 2gw1_A          278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC  357 (514)
T ss_dssp             HHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHH
Confidence             2233355555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--hHHHHHHHHHHHHH-
Q psy16214        206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--NSKLLHNRATVLFK-  282 (470)
Q Consensus       206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--~~~~~~~la~~~~~-  282 (470)
                      +..+++++...|+++.++..+            |.++...|++++|+..+++++...|.++..  ...++..+|.++.. 
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  425 (514)
T 2gw1_A          358 ETLFSEAKRKFPEAPEVPNFF------------AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN  425 (514)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcccCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence            555555555555555555544            888888888888888888888888875431  02368888888888 


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHH
Q psy16214        283 --MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNF  342 (470)
Q Consensus       283 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~  342 (470)
                        .|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+ .+....
T Consensus       426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  488 (514)
T 2gw1_A          426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA  488 (514)
T ss_dssp             CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence              888888888888888888888888888888888888888888888888888887 344333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.9e-33  Score=258.06  Aligned_cols=296  Identities=17%  Similarity=0.086  Sum_probs=267.2

Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214         27 YSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP  106 (470)
Q Consensus        27 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  106 (470)
                      ....+...|+++..+..+|.+++..|++++|+..++++++.+|.+..++..++.++...|++++|+..++++++.+|+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~   90 (330)
T 3hym_B           11 IPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP   90 (330)
T ss_dssp             ---------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred             hHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence            44556667888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC
Q psy16214        107 AIAQESKALETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN  185 (470)
Q Consensus       107 ~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~  185 (470)
                      .++..++.+            +...| ++++|+..+++++..+|....++..+|.++...|++++|+..+++++...|.+
T Consensus        91 ~~~~~l~~~------------~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  158 (330)
T 3hym_B           91 VSWFAVGCY------------YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC  158 (330)
T ss_dssp             HHHHHHHHH------------HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHH------------HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc
Confidence            998776665            67778 99999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214        186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN  265 (470)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  265 (470)
                      ..++..+|.++...|++++|+..+++++...|++..++..+            |.++...|++++|+..+++++...|..
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~~~~~  226 (330)
T 3hym_B          159 HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV------------GVVAFQNGEWKTAEKWFLDALEKIKAI  226 (330)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999999888888            999999999999999999999886431


Q ss_pred             c-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhH
Q psy16214        266 I-----NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-REN  339 (470)
Q Consensus       266 ~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~  339 (470)
                      .     .....++..+|.++..+|++++|+..++++++++|+++.++..+|.++..+|++++|+.+|+++++++|+ ...
T Consensus       227 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (330)
T 3hym_B          227 GNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS  306 (330)
T ss_dssp             SCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence            1     1135689999999999999999999999999999999999999999999999999999999999999997 555


Q ss_pred             HHHHHHH
Q psy16214        340 HNFLEEA  346 (470)
Q Consensus       340 ~~~l~~~  346 (470)
                      ...+..+
T Consensus       307 ~~~l~~~  313 (330)
T 3hym_B          307 VTMLGHC  313 (330)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=4.6e-32  Score=253.78  Aligned_cols=294  Identities=17%  Similarity=0.087  Sum_probs=269.1

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---CCHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP---RFSKGLIRQ   78 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l   78 (470)
                      .++..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|   +++.++..+
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  114 (359)
T 3ieg_A           35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL  114 (359)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999   888888777


Q ss_pred             ------------HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy16214         79 ------------IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD  146 (470)
Q Consensus        79 ------------a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  146 (470)
                                  |.++...|++++|+..++++++..|.++.++..++.+            +...|++++|+..+++++.
T Consensus       115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~A~~~~~~~~~  182 (359)
T 3ieg_A          115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC------------FIKEGEPRKAISDLKAASK  182 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH------------HHHCCCHHHHHHHHHHHHH
Confidence                        7999999999999999999999999999887666665            7778999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHH------------HHHHHHhccCChHHHHHHHHHHHh
Q psy16214        147 QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF------------VRGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       147 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                      ..|.++.++..+|.++...|++++|+..++++++..|+++.++.            .+|.++...|++++|+..+++++.
T Consensus       183 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  262 (359)
T 3ieg_A          183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK  262 (359)
T ss_dssp             TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999988655            448889999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16214        215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCT  294 (470)
Q Consensus       215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (470)
                      ..|+++..+...        +...|.++...|++++|+..+++++...|++    +.++..+|.++...|++++|+..++
T Consensus       263 ~~~~~~~~~~~~--------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~A~~~~~  330 (359)
T 3ieg_A          263 TEPSVAEYTVRS--------KERICHCFSKDEKPVEAIRICSEVLQMEPDN----VNALKDRAEAYLIEEMYDEAIQDYE  330 (359)
T ss_dssp             HCCSSHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCchHHHHHH--------HHHHHHHHHHccCHHHHHHHHHHHHHhCccc----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999987543211        1223999999999999999999999999984    5679999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        295 LALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       295 ~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      ++++++|++..++..++.++..+++
T Consensus       331 ~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          331 AAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             HHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999998876653

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=9.4e-34  Score=266.63  Aligned_cols=293  Identities=17%  Similarity=0.103  Sum_probs=261.2

Q ss_pred             HHHHhcCCHHHHHH-HHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy16214         12 NTQYKLKQYSKALK-CYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG   86 (470)
Q Consensus        12 ~~~~~~g~~~~A~~-~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   86 (470)
                      ..+...|+|++|+. .|++++...|++    ...++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|
T Consensus        33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence            36677899999999 999999998876    4669999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----------
Q psy16214         87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKL----------  156 (470)
Q Consensus        87 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~----------  156 (470)
                      ++++|+..++++++++|+++.++..++.+            +...|++++|+..+++++...|.....+.          
T Consensus       113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (368)
T 1fch_A          113 QELLAISALRRCLELKPDNQTALMALAVS------------FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAG  180 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHTSTTTGGGCC----------
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhc
Confidence            99999999999999999999988776666            67789999999999999999998877664          


Q ss_pred             ------HHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q psy16214        157 ------MKAECLAHLNRLQEAQEIANSILATDKQ--NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR  228 (470)
Q Consensus       157 ------~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  228 (470)
                            .++.++ ..|++++|+..+++++...|.  ++.++..+|.++...|++++|+..+++++..+|++..++..+  
T Consensus       181 ~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l--  257 (368)
T 1fch_A          181 LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL--  257 (368)
T ss_dssp             -----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--
T ss_pred             ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHH--
Confidence                  456666 999999999999999999999  899999999999999999999999999999999999888888  


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q psy16214        229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-----  303 (470)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  303 (470)
                                |.++...|++++|+..|++++...|.    ...++..+|.++..+|++++|+..+++++.+.|++     
T Consensus       258 ----------~~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  323 (368)
T 1fch_A          258 ----------GATLANGNQSEEAVAAYRRALELQPG----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  323 (368)
T ss_dssp             ----------HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             ----------HHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence                      99999999999999999999999998    45779999999999999999999999999999988     


Q ss_pred             ------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        304 ------LKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       304 ------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                            ..+|..+|.++..+|++++|...++++++.
T Consensus       324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             cccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence                  899999999999999999999999877754

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.3e-32  Score=270.54  Aligned_cols=309  Identities=10%  Similarity=0.015  Sum_probs=260.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------------
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-------------   71 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------------   71 (470)
                      ..++.+|..+...|++++|+..|++++.. |.++.++..++.+|...|++++|+..|++   ..|..             
T Consensus       118 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~  193 (597)
T 2xpi_A          118 NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQD  193 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHHHHHHHCS---SCTTC----------CCC
T ss_pred             hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHHHHHHHhc---cCCccccccccccccccc
Confidence            45667777777777777777777777654 45677788888888888888888887775   34444             


Q ss_pred             ------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH-----------------------------
Q psy16214         72 ------SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE-----------------------------  116 (470)
Q Consensus        72 ------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~-----------------------------  116 (470)
                            ..+|..+|.+|...|++++|+..|+++++.+|++..++..++.++                             
T Consensus       194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  273 (597)
T 2xpi_A          194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS  273 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence                  789999999999999999999999999999999988877664422                             


Q ss_pred             ---------HHHHHHHHHH---------------------HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy16214        117 ---------TMAKNFEGAS---------------------KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN  166 (470)
Q Consensus       117 ---------~~~~~~~~a~---------------------~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~  166 (470)
                               ...+.+..|.                     .+...|++++|+..+++++...|.+..++..++.++...|
T Consensus       274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  353 (597)
T 2xpi_A          274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESG  353 (597)
T ss_dssp             HHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhC
Confidence                     1223333333                     3445689999999999999999988888889999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214        167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG  246 (470)
Q Consensus       167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (470)
                      ++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..|.+...+..+            +.++...|
T Consensus       354 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g  421 (597)
T 2xpi_A          354 EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGF------------AHSFAIEG  421 (597)
T ss_dssp             CHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHT
T ss_pred             CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999988888877            99999999


Q ss_pred             CHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q psy16214        247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVID  326 (470)
Q Consensus       247 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~  326 (470)
                      ++++|++.|++++...|.+    ..++..++.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..
T Consensus       422 ~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  497 (597)
T 2xpi_A          422 EHDQAISAYTTAARLFQGT----HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH  497 (597)
T ss_dssp             CHHHHHHHHHHHHHTTTTC----SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            9999999999999998874    456889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q psy16214        327 AEKIYKM  333 (470)
Q Consensus       327 ~~~a~~~  333 (470)
                      |++++++
T Consensus       498 ~~~~~~~  504 (597)
T 2xpi_A          498 FQNALLL  504 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999988

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.1e-31  Score=261.39  Aligned_cols=372  Identities=12%  Similarity=0.028  Sum_probs=288.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc---------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISV---------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-------   67 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------   67 (470)
                      +..+..+|.++...|++++|+++|++++++         +|....+|.++|.+|..+|++++|+.++++++++       
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            456788999999999999999999999876         5667888999999999999999999999999986       


Q ss_pred             -CCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214         68 -DPRFSKGLIRQIKCNIAL--GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRA  144 (470)
Q Consensus        68 -~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  144 (470)
                       .+..+.++..+|.++...  +++++|+.+|+++++++|+++.++..++.+....         -..+++++|+..++++
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l---------~~~~~~~~al~~~~~a  201 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL---------DNWPPSQNAIDPLRQA  201 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---------HHSCCCCCTHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------cCchHHHHHHHHHHHH
Confidence             345678888888887765  4799999999999999999999988777764432         3457788899999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214        145 MDQGVASKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA  220 (470)
Q Consensus       145 l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  220 (470)
                      ++++|++..++..++..+..    .+++++|+.++++++..+|.++.++..+|.++...|++++|+..++++++.+|++.
T Consensus       202 l~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~  281 (472)
T 4g1t_A          202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA  281 (472)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred             hhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH
Confidence            99999999999888877655    46788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHH
Q psy16214        221 KAKETYKRAKLLKAKKEE-------GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADC  293 (470)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (470)
                      .++..+..+.........       +......+.+++|+..+++++..+|.+...    +..+|.++..+|++++|+.+|
T Consensus       282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~lg~~~~~~~~~~~A~~~~  357 (472)
T 4g1t_A          282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV----CSILASLHALADQYEEAEYYF  357 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCC----HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhh----hhhHHHHHHHhccHHHHHHHH
Confidence            988877443221111111       111222345788999999999999996654    899999999999999999999


Q ss_pred             HHHHHhCCCCHH---HHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCChhH-HHHHHHHHHHhhcccccchhhhccCCCCC
Q psy16214        294 TLALEKDPNYLK---ALSRRCKC-FHALGQYKECVIDAEKIYKMDNSREN-HNFLEEAKRLLKRSEVKDYYKILGVTKNA  368 (470)
Q Consensus       294 ~~al~~~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~l~~~~~~~~~~~~~~~y~~lg~~~~~  368 (470)
                      ++++++.|++..   ++..+|.+ +...|++++|+..|++++++.|+... ...+..+                      
T Consensus       358 ~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l----------------------  415 (472)
T 4g1t_A          358 QKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKL----------------------  415 (472)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHH----------------------
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHH----------------------
Confidence            999999987643   45667765 45789999999999999999997322 2222111                      


Q ss_pred             CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhh-hhccCCCC
Q psy16214        369 SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKR-SRYDRGED  428 (470)
Q Consensus       369 ~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~-~~yd~~~~  428 (470)
                            ....+.++..+|+...            .+..++.+|..++|.++. ..|...-+
T Consensus       416 ------~~~~~~~l~~~p~~~~------------~~~~LG~~~~~~g~~~~A~~~y~kALe  458 (472)
T 4g1t_A          416 ------QKIAKMRLSKNGADSE------------ALHVLAFLQELNEKMQQADEDSERGLE  458 (472)
T ss_dssp             ------HHHHHHHHHHCC-CTT------------HHHHHHHHHHHHHHCC-----------
T ss_pred             ------HHHHHHHHHhCCCCHH------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence                  1122345667777433            377788888888775554 44444444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1e-31  Score=265.95  Aligned_cols=299  Identities=15%  Similarity=0.160  Sum_probs=269.8

Q ss_pred             HHHHHHHHHHhhcCCc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214         21 SKALKCYSEAISVCPN----VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK   96 (470)
Q Consensus        21 ~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (470)
                      +.+...+..+....+.    .+..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~   83 (537)
T 3fp2_A            4 MNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT   83 (537)
T ss_dssp             ----CCHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCchHHhhcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3444445555555544    478899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh----------------------------------------------
Q psy16214         97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFE----------------------------------------------  130 (470)
Q Consensus        97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~----------------------------------------------  130 (470)
                      ++++++|+++.++..++.++...+++..|...++                                              
T Consensus        84 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~  163 (537)
T 3fp2_A           84 KALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS  163 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCC
T ss_pred             HHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccch
Confidence            9999999999999999999999888888876441                                              


Q ss_pred             ---------------------------------------------------cCCHHHHHHHHHHHHHhCCCCHH------
Q psy16214        131 ---------------------------------------------------ANDYRTAMFYLDRAMDQGVASKT------  153 (470)
Q Consensus       131 ---------------------------------------------------~~~~~~A~~~~~~~l~~~p~~~~------  153 (470)
                                                                         .+++++|+..++++++..|++..      
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~  243 (537)
T 3fp2_A          164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA  243 (537)
T ss_dssp             HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred             HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence                                                               13788999999999999999865      


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214        154 -YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL  232 (470)
Q Consensus       154 -~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  232 (470)
                       ++..+|.++...|++++|+..+++++..+|. +.++..+|.++...|++++|+..+++++..+|+++.++..+      
T Consensus       244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------  316 (537)
T 3fp2_A          244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR------  316 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHH------
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHH------
Confidence             4677888999999999999999999999999 99999999999999999999999999999999999998888      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                            |.++...|++++|+..+++++...|.++    .++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus       317 ------~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  386 (537)
T 3fp2_A          317 ------GQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAE  386 (537)
T ss_dssp             ------HHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             ------HHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence                  9999999999999999999999999954    569999999999999999999999999999999999999999


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        313 CFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++...|++++|+..|++++++.|+
T Consensus       387 ~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          387 ILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHcCCc
Confidence            999999999999999999999875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=5.7e-32  Score=263.40  Aligned_cols=318  Identities=12%  Similarity=0.045  Sum_probs=252.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC--------CchhHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVC--------PNVAAYYGNRAACYMMLG--MYTYALDDAKLAVSLDPRFSK   73 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~   73 (470)
                      +..|.++|.+++..|++++|+.+|++++.+.        +..+.++..+|.++...|  +|++|+.+|+++++++|+++.
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~  173 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE  173 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH
Confidence            4568899999999999999999999999763        345788889998887754  699999999999999999999


Q ss_pred             HHHHHHHHHHH---cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         74 GLIRQIKCNIA---LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        74 ~~~~la~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                      ++..++.++..   .++.++|++.++++++++|+++.++..++..+...        ....+++++|+..+++++..+|.
T Consensus       174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~--------~~~~~~~~~a~~~~~~al~~~~~  245 (472)
T 4g1t_A          174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM--------REEGEEEGEGEKLVEEALEKAPG  245 (472)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC--------C------CHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHHHhCcc
Confidence            99999988654   57788999999999999999999887766543221        23457888999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-------------------CChHHHHHHHHH
Q psy16214        151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-------------------DKMDLAVNHFQL  211 (470)
Q Consensus       151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~  211 (470)
                      ...++..+|.++...|++++|+..++++++.+|+++.++..+|.+|...                   +.+++|+..+++
T Consensus       246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  325 (472)
T 4g1t_A          246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK  325 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988543                   346789999999


Q ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH-HHHcCCHHHHH
Q psy16214        212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV-LFKMGKYNEAI  290 (470)
Q Consensus       212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~-~~~~g~~~~A~  290 (470)
                      ++..+|.+..++..+            |.++...|++++|+.+|++++.+.|++.. ...++..+|.+ +...|++++|+
T Consensus       326 a~~~~~~~~~~~~~l------------g~~~~~~~~~~~A~~~~~kaL~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Ai  392 (472)
T 4g1t_A          326 ADEANDNLFRVCSIL------------ASLHALADQYEEAEYYFQKEFSKELTPVA-KQLLHLRYGNFQLYQMKCEDKAI  392 (472)
T ss_dssp             HHHHCTTTCCCHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCCCHHH-HHHHHHHHHHHHHHTSSCHHHHH
T ss_pred             HhhcCCchhhhhhhH------------HHHHHHhccHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999988888            99999999999999999999999877543 23456666654 45789999999


Q ss_pred             HHHHHHHHhC------------------------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHH
Q psy16214        291 ADCTLALEKD------------------------PNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNF  342 (470)
Q Consensus       291 ~~~~~al~~~------------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~  342 (470)
                      ..|++++++.                        |+++.++..+|.+|..+|++++|+++|++|+++.|. +.....
T Consensus       393 ~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          393 HHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            9999988764                        566778999999999999999999999999999886 444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=7e-32  Score=253.71  Aligned_cols=280  Identities=14%  Similarity=0.066  Sum_probs=231.7

Q ss_pred             HHHHHHhhcCCchh----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214         25 KCYSEAISVCPNVA----AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        25 ~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      ..+..++...+.++    ..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  127 (365)
T 4eqf_A           48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLE  127 (365)
T ss_dssp             -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            44555555544443    44888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHH
Q psy16214        101 LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLM----------KAECLAHLNRLQE  170 (470)
Q Consensus       101 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------~a~~~~~~~~~~~  170 (470)
                      ++|++..++..++.+            +...|++++|+..+++++...|.....+..          +|.++...|++++
T Consensus       128 ~~p~~~~~~~~l~~~------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  195 (365)
T 4eqf_A          128 LQPNNLKALMALAVS------------YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEG  195 (365)
T ss_dssp             HCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHH
T ss_pred             cCCCCHHHHHHHHHH------------HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHH
Confidence            888888877666655            566788888888888888888776555544          4899999999999


Q ss_pred             HHHHHHHHhhcCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        171 AQEIANSILATDKQ--NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       171 A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      |+..+++++...|.  ++.++..+|.++...|++++|+..++++++..|++..++..+            |.++...|++
T Consensus       196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~g~~  263 (365)
T 4eqf_A          196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL------------GATLANGDRS  263 (365)
T ss_dssp             HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCH
T ss_pred             HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCH
Confidence            99999999999999  899999999999999999999999999999999999988888            9999999999


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------------YLKALSRRCKCFHA  316 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~  316 (470)
                      ++|+..|++++...|+    ...++.++|.++..+|++++|+..+++++++.|+            +..+|..++.++..
T Consensus       264 ~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (365)
T 4eqf_A          264 EEAVEAYTRALEIQPG----FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL  339 (365)
T ss_dssp             HHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999998    4677999999999999999999999999999877            36789999999999


Q ss_pred             hCCHHHHHHHHHHHHh
Q psy16214        317 LGQYKECVIDAEKIYK  332 (470)
Q Consensus       317 ~g~~~~A~~~~~~a~~  332 (470)
                      +|+.+.|....++.+.
T Consensus       340 ~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          340 MDQPELFQAANLGDLD  355 (365)
T ss_dssp             HTCHHHHHHHHTTCCG
T ss_pred             cCcHHHHHHHHHhhHH
Confidence            9999988877776443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=100.00  E-value=1.1e-31  Score=252.28  Aligned_cols=281  Identities=15%  Similarity=0.080  Sum_probs=246.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..++.+|..++..|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.++.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT  144 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA--SKTYKLMKAEC  161 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~  161 (470)
                      .+|++++|+..+++++++.|++...+..++.....  ....+..+...|++++|+..+++++...|.  ++.++..+|.+
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL--TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL  222 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC---------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHH--HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence            99999999999999999999877766544211000  122345577889999999999999999999  89999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE  241 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (470)
                      +...|++++|+..++++++..|+++.++..+|.++...|++++|+..|+++++.+|++..++..+            |.+
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~  290 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL------------GIS  290 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH------------HHH
Confidence            99999999999999999999999999999999999999999999999999999999999988888            999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcccCcc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy16214        242 KFVAGKNQEAFDIYTEALKIDARNIN--------INSKLLHNRATVLFKMGKYNEAIADCTLALE  298 (470)
Q Consensus       242 ~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (470)
                      +...|++++|+..|++++.+.|+...        ....+|..++.++..+|+.+.+.....+.+.
T Consensus       291 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~  355 (365)
T 4eqf_A          291 CINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD  355 (365)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence            99999999999999999999987432        1357899999999999999998887766443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=100.00  E-value=4e-31  Score=248.69  Aligned_cols=284  Identities=12%  Similarity=0.070  Sum_probs=251.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMA---KNFEGASKAFEANDYRTAMFYLDRAMDQGVA--SKTYKLMK  158 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~  158 (470)
                      ..|++++|+..+++++.+.|.+...+..++.+....   ........++..|++++|+..+++++...|.  .+.++..+
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l  223 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  223 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence            999999999999999999999887664321110000   0000111123678899999999999999999  89999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  238 (470)
                      |.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..++..+            
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l------------  291 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL------------  291 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH------------
Confidence            99999999999999999999999999999999999999999999999999999999999999988888            


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCc-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNI-------NINSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      |.++...|++++|+..|++++.+.|++.       .....+|..+|.++..+|++++|...+.++++.
T Consensus       292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  359 (368)
T 1fch_A          292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST  359 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence            9999999999999999999999999851       112678999999999999999999998877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.98  E-value=7.4e-31  Score=245.23  Aligned_cols=259  Identities=14%  Similarity=0.057  Sum_probs=231.3

Q ss_pred             HhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCChHH
Q psy16214         30 AISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD-APTARSNLKALQELDPDNPAI  108 (470)
Q Consensus        30 al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~  108 (470)
                      +|..+|+++.++..+|.++...|++++|+..++++++++|++..+|..+|.++..+|+ +++|+..|++++.++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            4567888899999999999999999999999999999999999999999999999997 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHH
Q psy16214        109 AQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA  188 (470)
Q Consensus       109 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  188 (470)
                      |..++.+            +...|++++|+..+++++.++|++..+|..+|.++...|++++|+..++++++++|.+..+
T Consensus       169 ~~~~g~~------------~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a  236 (382)
T 2h6f_A          169 WHHRRVL------------VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSV  236 (382)
T ss_dssp             HHHHHHH------------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHH------------HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Confidence            9888777            4556889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-cCChHHH-----HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHh
Q psy16214        189 VFVRGLCLYY-DDKMDLA-----VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG--KNQEAFDIYTEALK  260 (470)
Q Consensus       189 ~~~la~~~~~-~g~~~~A-----~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~  260 (470)
                      |+.+|.++.. .|..++|     +.+|++++.++|++..++..+            +.++...|  ++++|++.+.++ +
T Consensus       237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l------------~~ll~~~g~~~~~~a~~~~~~~-~  303 (382)
T 2h6f_A          237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYL------------KGILQDRGLSKYPNLLNQLLDL-Q  303 (382)
T ss_dssp             HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHTTTCGGGCHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHccCccchHHHHHHHHHh-c
Confidence            9999999999 5655888     588999999999999998888            88888877  688999988887 7


Q ss_pred             hcccCccchHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHh
Q psy16214        261 IDARNININSKLLHNRATVLFKMG---------KYNEAIADCTLA-LEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       261 ~~p~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~  317 (470)
                      .+|+    ...++..+|.++..+|         .+++|+.+|+++ ++++|.....|..++.++...
T Consensus       304 ~~p~----~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          304 PSHS----SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             TTCC----CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             cCCC----CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            7777    4567888999998874         258899999999 899999999998888877654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.98  E-value=7.4e-31  Score=242.43  Aligned_cols=287  Identities=12%  Similarity=0.038  Sum_probs=249.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.++.+|..++..|++++|+.+|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   99 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH   99 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-HHHHH-HH-HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMA-KNFEG-AS-KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA  159 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-~~~~~-a~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  159 (470)
                      ...|++++|+..+++++...|.+...+..+....... ..... +. .+...|++++|+..+++++...|.+..++..+|
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  179 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG  179 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            9999999999999999999999887765552211000 00011 11 256678899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++..|++..++..+            |
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l------------~  247 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM------------A  247 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------H
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH------------H
Confidence            9999999999999999999999999999999999999999999999999999999999999888887            9


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNINI--------NSKLLHNRATVLFKMGKYNEAIADCTLALEKDP  301 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (470)
                      .++...|++++|+..+++++...|.+...        ...++..+|.++..+|++++|...++++++..|
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~  317 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA  317 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence            99999999999999999999998883111        356788888888888998888888887776544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.98  E-value=1e-30  Score=241.52  Aligned_cols=271  Identities=14%  Similarity=0.086  Sum_probs=250.1

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      ++..++.+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..++++++.+|++..++..++.+ 
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~-   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS-   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH-
Confidence            4567899999999999999999999999999999999999999999999999999999999999999999887666655 


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHhhc
Q psy16214        117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK--------------AE-CLAHLNRLQEAQEIANSILAT  181 (470)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~--------------a~-~~~~~~~~~~A~~~~~~~l~~  181 (470)
                                 +...|++++|+..+++++...|.....+..+              +. ++...|++++|+..+++++..
T Consensus        99 -----------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  167 (327)
T 3cv0_A           99 -----------HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM  167 (327)
T ss_dssp             -----------HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH
T ss_pred             -----------HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh
Confidence                       6778999999999999999999988877766              66 688899999999999999999


Q ss_pred             CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy16214        182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI  261 (470)
Q Consensus       182 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  261 (470)
                      .|.++.++..+|.++...|++++|+..+++++...|++..++..+            |.++...|++++|+..+++++..
T Consensus       168 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~a~~~  235 (327)
T 3cv0_A          168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL------------GATLANGNRPQEALDAYNRALDI  235 (327)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999888887            99999999999999999999999


Q ss_pred             cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16214        262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------------YLKALSRRCKCFHALGQYKECVIDAEK  329 (470)
Q Consensus       262 ~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~  329 (470)
                      .|+    ...++..+|.++..+|++++|+..+++++...|+            ++.++..+|.++..+|++++|...+++
T Consensus       236 ~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          236 NPG----YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             CCC----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            998    4567999999999999999999999999999999            799999999999999999999999998


Q ss_pred             HHhcCC
Q psy16214        330 IYKMDN  335 (470)
Q Consensus       330 a~~~~p  335 (470)
                      +++..|
T Consensus       312 ~l~~~~  317 (327)
T 3cv0_A          312 NVEPFA  317 (327)
T ss_dssp             CSHHHH
T ss_pred             HHHhcc
Confidence            887765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=8e-30  Score=238.25  Aligned_cols=252  Identities=10%  Similarity=-0.030  Sum_probs=233.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM-YTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .++.+..+|.++...|++++|+..|+++|.++|++..+|+++|.++..+|+ +++|+..|+++++++|++..+|+.+|.+
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999997 9999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC  161 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  161 (470)
                      +..+|++++|+..|+++++++|++..+|..++.+            +...|++++|+..++++++++|.+..+|..+|.+
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~------------~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~  243 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV------------IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV  243 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH------------HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999888877            5566899999999999999999999999999999


Q ss_pred             HHH-cCCHHHH-----HHHHHHHhhcCCCChHHHHHHHHHHhccC--ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHH
Q psy16214        162 LAH-LNRLQEA-----QEIANSILATDKQNPDAVFVRGLCLYYDD--KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLK  233 (470)
Q Consensus       162 ~~~-~~~~~~A-----~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~  233 (470)
                      +.. .|.+++|     +.++.+++.++|++..+|+.++.++...|  ++++|+..++++ +.+|++..++..+       
T Consensus       244 l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~L-------  315 (382)
T 2h6f_A          244 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFL-------  315 (382)
T ss_dssp             HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHH-------
T ss_pred             HHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHH-------
Confidence            999 5655777     59999999999999999999999999988  699999999998 9999999998888       


Q ss_pred             HHHHHHHHHHhcC---------CHHHHHHHHHHH-HhhcccCccchHHHHHHHHHHHHHc
Q psy16214        234 AKKEEGNEKFVAG---------KNQEAFDIYTEA-LKIDARNININSKLLHNRATVLFKM  283 (470)
Q Consensus       234 ~~~~~~~~~~~~~---------~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~la~~~~~~  283 (470)
                           |.++...+         .+++|+++|+++ ++++|.    ....|..++.++..+
T Consensus       316 -----a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~----r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          316 -----VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI----RKEYWRYIGRSLQSK  366 (382)
T ss_dssp             -----HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHHH
Confidence                 88888874         359999999999 999998    566788888877654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.97  E-value=3.7e-28  Score=218.34  Aligned_cols=257  Identities=16%  Similarity=0.102  Sum_probs=202.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQ   78 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l   78 (470)
                      +++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++ .|.+    ..++..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            4566778888888888888888888888888888888888888888888888888888888887 3332    4457778


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214         79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK  158 (470)
Q Consensus        79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  158 (470)
                      |.++..+|++++|+..|+++++.+|.++                                              .++..+
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~----------------------------------------------~~~~~l  114 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRL----------------------------------------------DMYGQI  114 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCT----------------------------------------------HHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccH----------------------------------------------HHHHHH
Confidence            8888888877777777777776665544                                              456678


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  238 (470)
                      |.++...|++++|+..+++++..+|.++.+++.+|...+..+++++|+..++++++.+|++..++..+            
T Consensus       115 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~------------  182 (272)
T 3u4t_A          115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWR------------  182 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------
T ss_pred             HHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHH------------
Confidence            88889999999999999999999999999999999444455699999999999999999988887777            


Q ss_pred             HHHHHhcCC---HHHHHHHHHHHHhhcccCcc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214        239 GNEKFVAGK---NQEAFDIYTEALKIDARNIN----INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC  311 (470)
Q Consensus       239 ~~~~~~~~~---~~~A~~~~~~al~~~p~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  311 (470)
                      |.++...++   +++|+..|+++++.....+.    ....++..+|.++...|++++|+.+++++++++|+++.++-.++
T Consensus       183 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          183 ARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred             HHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence            888888888   88899999999987633222    12478899999999999999999999999999999999998888


Q ss_pred             HHHHHhC
Q psy16214        312 KCFHALG  318 (470)
Q Consensus       312 ~~~~~~g  318 (470)
                      .+....+
T Consensus       263 ~~~~~~~  269 (272)
T 3u4t_A          263 MKLEHHH  269 (272)
T ss_dssp             -------
T ss_pred             hhhcccc
Confidence            7765543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.4e-28  Score=214.74  Aligned_cols=228  Identities=16%  Similarity=0.141  Sum_probs=173.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-------SKG   74 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~   74 (470)
                      ..++.++.+|..++..|+|++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++++|+.       +.+
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            357889999999999999999999999999999 889999999999999999999999999999998876       789


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214         75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY  154 (470)
Q Consensus        75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  154 (470)
                      +..+|.++..+|++++|+..+++++.+.|.. .                   .+...+++++|+..+++++..+|....+
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~-------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~  141 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-D-------------------ILTKLRNAEKELKKAEAEAYVNPEKAEE  141 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-H-------------------HHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCchh-H-------------------HHHHHhHHHHHHHHHHHHHHcCcchHHH
Confidence            9999999999999999999999999988761 1                   1233345566666666666666666666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214        155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA  234 (470)
Q Consensus       155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  234 (470)
                      +..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..++++++.+|++..++..+        
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l--------  213 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK--------  213 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH--------
Confidence            666666666666666666666666666666666666666666666666666666666666666665555555        


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                          |.++...|++++|+..+++++++.
T Consensus       214 ----~~~~~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          214 ----ATAQIAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             ----HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHhhHHHHHHHHHHHHHhC
Confidence                666666666666666666666655

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.96  E-value=7.8e-28  Score=216.21  Aligned_cols=217  Identities=16%  Similarity=0.068  Sum_probs=178.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ   78 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   78 (470)
                      .+..+..+|.+++..|++++|+..|++++. .|.+    +.++..+|.++...|++++|+..++++++.+|.++.++..+
T Consensus        36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  114 (272)
T 3u4t_A           36 SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQI  114 (272)
T ss_dssp             CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            456789999999999999999999999999 4444    34599999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214         79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK  158 (470)
Q Consensus        79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  158 (470)
                      |.++..+|++++|+..++++++++|.++.++                                              ..+
T Consensus       115 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------------------------------------~~l  148 (272)
T 3u4t_A          115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF----------------------------------------------YEL  148 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHGGGCCSSCCCHHHH----------------------------------------------HHH
T ss_pred             HHHHHHccCHHHHHHHHHHHhhcCCCcHHHH----------------------------------------------HHH
Confidence            9999999999999999999999888776654                                              334


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCC---hHHHHHHHHHHHhhC---CChH-----HHHHHHH
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDK---MDLAVNHFQLLLKLA---PDHA-----KAKETYK  227 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~---p~~~-----~~~~~~~  227 (470)
                      |......+++++|+..++++++..|+++.++..+|.++...++   +++|+..++++++..   |+..     .++..+ 
T Consensus       149 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-  227 (272)
T 3u4t_A          149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI-  227 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-
Confidence            5233334488888888888888888888888888988888888   888999999998876   4321     233333 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH
Q psy16214        228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK  282 (470)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~  282 (470)
                                 |.++...|++++|+.+|+++++++|+++    .++..++.+...
T Consensus       228 -----------~~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~l~~~~~~  267 (272)
T 3u4t_A          228 -----------AYYYTINRDKVKADAAWKNILALDPTNK----KAIDGLKMKLEH  267 (272)
T ss_dssp             -----------HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHC-----
T ss_pred             -----------HHHHHHcCCHHHHHHHHHHHHhcCccHH----HHHHHhhhhhcc
Confidence                       9999999999999999999999999954    456666555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.96  E-value=4.9e-27  Score=212.43  Aligned_cols=258  Identities=16%  Similarity=0.095  Sum_probs=187.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q psy16214         12 NTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPT   90 (470)
Q Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~   90 (470)
                      ..++..|+|.+|+..++++...+|++ ......++.+|+.+|+++.|+..++.   .+|....++..++..+...++.++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHH
Confidence            45677888888888888887777776 45677778888888888888877755   255566677777888888888888


Q ss_pred             HHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214         91 ARSNLKALQEL--DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL  168 (470)
Q Consensus        91 A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~  168 (470)
                      |++.+++++..  +|+++                                              .++..+|.++...|++
T Consensus        84 A~~~l~~ll~~~~~P~~~----------------------------------------------~~~~~la~~~~~~g~~  117 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNT----------------------------------------------TFLLMAASIYFYDQNP  117 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCH----------------------------------------------HHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhcccCCCCH----------------------------------------------HHHHHHHHHHHHCCCH
Confidence            88777776653  35544                                              4555667777777777


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      ++|+..+++     |.+++++..+|.++..+|++++|+..++++++.+|++........          ....+...|++
T Consensus       118 ~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a----------~~~l~~~~~~~  182 (291)
T 3mkr_A          118 DAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA----------WVSLAAGGEKL  182 (291)
T ss_dssp             HHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH----------HHHHHHCTTHH
T ss_pred             HHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH----------HHHHHhCchHH
Confidence            777777776     677777777777777777777777777777777777653332210          02333445778


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH-HHHHH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE-CVIDA  327 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~  327 (470)
                      ++|+.+|++++...|+    .+.++.++|.++..+|++++|+..+++++.++|+++.++.++|.++..+|++.+ +..++
T Consensus       183 ~eA~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          183 QDAYYIFQEMADKCSP----TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             HHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            8888888888877777    345677788888888888888888888888888888888888888888887765 45777


Q ss_pred             HHHHhcCCCh
Q psy16214        328 EKIYKMDNSR  337 (470)
Q Consensus       328 ~~a~~~~p~~  337 (470)
                      +++++++|+.
T Consensus       259 ~~~~~~~P~~  268 (291)
T 3mkr_A          259 SQLKDAHRSH  268 (291)
T ss_dssp             HHHHHHCTTC
T ss_pred             HHHHHhCCCC
Confidence            7888888873

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=8.5e-28  Score=208.08  Aligned_cols=199  Identities=21%  Similarity=0.197  Sum_probs=177.7

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|+++.++..+|.+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHc-----------CChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         82 NIAL-----------GDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        82 ~~~~-----------g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                      +..+           |++++|+..|+++++++|+++.++..++.+            +...|++++|+..++++++.+ +
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~------------~~~~g~~~~A~~~~~~al~~~-~  149 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLV------------YALLGERDKAEASLKQALALE-D  149 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHC-C
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHH------------HHHcCChHHHHHHHHHHHhcc-c
Confidence            9999           999999999999999999999998777666            777899999999999999999 9


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHH
Q psy16214        151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLL  213 (470)
Q Consensus       151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l  213 (470)
                      ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++-
T Consensus       150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999998764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.96  E-value=6.3e-27  Score=211.73  Aligned_cols=236  Identities=14%  Similarity=0.082  Sum_probs=191.0

Q ss_pred             HHHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q psy16214         46 ACYMMLGMYTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG  124 (470)
Q Consensus        46 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~  124 (470)
                      .-.+..|+|..|+..++++...+|++ .++...++++|+.+|+++.|+..++..   +                      
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~----------------------   61 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---S----------------------   61 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---S----------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---C----------------------
Confidence            34566788888888887777777765 356677788888888888877655431   1                      


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCCChHHHHHHHHHHhccCCh
Q psy16214        125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT--DKQNPDAVFVRGLCLYYDDKM  202 (470)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~  202 (470)
                                              |....++..++..+...+++++|++.+++++..  +|+++.+++.+|.++...|++
T Consensus        62 ------------------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~  117 (291)
T 3mkr_A           62 ------------------------APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP  117 (291)
T ss_dssp             ------------------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred             ------------------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence                                    222345566888899999999999999999875  699999999999999999999


Q ss_pred             HHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHH--HHH
Q psy16214        203 DLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA--TVL  280 (470)
Q Consensus       203 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la--~~~  280 (470)
                      ++|+..+++     |++..++..+            |.++...|++++|+..+++++..+|++.    ......+  .++
T Consensus       118 ~~Al~~l~~-----~~~~~~~~~l------------~~~~~~~g~~~~A~~~l~~~~~~~p~~~----~~~l~~a~~~l~  176 (291)
T 3mkr_A          118 DAALRTLHQ-----GDSLECMAMT------------VQILLKLDRLDLARKELKKMQDQDEDAT----LTQLATAWVSLA  176 (291)
T ss_dssp             HHHHHHHTT-----CCSHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHH
T ss_pred             HHHHHHHhC-----CCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHhhCcCcH----HHHHHHHHHHHH
Confidence            999999988     8888888887            9999999999999999999999998853    1222222  333


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214        281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK  351 (470)
Q Consensus       281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~  351 (470)
                      ...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++++|+ .++...+..+.....
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            45589999999999999999999999999999999999999999999999999997 566555554444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.96  E-value=1e-28  Score=235.18  Aligned_cols=303  Identities=15%  Similarity=0.064  Sum_probs=247.8

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCC
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSL------DPRF   71 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~   71 (470)
                      ..+..++.+|..++..|++++|+.+|++++...|.+    ..++..+|.++...|++++|+..+++++.+      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            456788999999999999999999999999999987    468999999999999999999999999887      3445


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH------HHHHHHHHHHHHHHHHHHHHHHhcCC------------
Q psy16214         72 SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA------IAQESKALETMAKNFEGASKAFEAND------------  133 (470)
Q Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~------------  133 (470)
                      ..++..+|.++..+|++++|+..+++++.+.|....      ++..++.+            +...|+            
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~------------~~~~g~~~~~~~~~~~~~  154 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV------------YHAKGKSFGCPGPQDVGE  154 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------------HHHHHHTCC-------CC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH------------HHHcCCcccccccchhhh
Confidence            778999999999999999999999999998765422      44444444            444455            


Q ss_pred             --------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH------HHHHHH
Q psy16214        134 --------YRTAMFYLDRAMDQ------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD------AVFVRG  193 (470)
Q Consensus       134 --------~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la  193 (470)
                              +++|+..+.+++..      .|....++..+|.++...|++++|+..+++++...|....      ++..+|
T Consensus       155 ~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  234 (406)
T 3sf4_A          155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG  234 (406)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence                    77777788777766      3344567889999999999999999999999988765544      899999


Q ss_pred             HHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC--ccchHH
Q psy16214        194 LCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN--ININSK  271 (470)
Q Consensus       194 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~  271 (470)
                      .++...|++++|+.++++++...|.......      ....+...|.++...|++++|+.++++++.+.+..  ......
T Consensus       235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  308 (406)
T 3sf4_A          235 NAYIFLGEFETASEYYKKTLLLARQLKDRAV------EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR  308 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhCcCchH------HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            9999999999999999999987665421111      11122233999999999999999999999886653  222467


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhCCHHH
Q psy16214        272 LLHNRATVLFKMGKYNEAIADCTLALEKDP------NYLKALSRRCKCFHALGQYKE  322 (470)
Q Consensus       272 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~  322 (470)
                      ++..+|.++..+|++++|+.++++++++.+      ....++..+|.++..+|+...
T Consensus       309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            889999999999999999999999998843      337788999999999998744

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.2e-27  Score=211.21  Aligned_cols=246  Identities=21%  Similarity=0.228  Sum_probs=204.8

Q ss_pred             chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      +.+..+..+|.+++..|++++|+..++++++.+ .++.++..+|.++..+|++++|+..+.+++++.|++...+.     
T Consensus         3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----   76 (258)
T 3uq3_A            3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-----   76 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-----
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-----
Confidence            457889999999999999999999999999999 89999999999999999999999999999998776531110     


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        116 ETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       116 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                                                        ..+.++..+|.++...|++++|+..+++++...|.        +.+
T Consensus        77 ----------------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~  114 (258)
T 3uq3_A           77 ----------------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADI  114 (258)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHH
T ss_pred             ----------------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHH
Confidence                                              01345566788888888888888888888887776        456


Q ss_pred             HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214        196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN  275 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  275 (470)
                      +...|++++|+..+++++..+|.+..++..+            |.++...|++++|+..+++++...|.+    ..++..
T Consensus       115 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~  178 (258)
T 3uq3_A          115 LTKLRNAEKELKKAEAEAYVNPEKAEEARLE------------GKEYFTKSDWPNAVKAYTEMIKRAPED----ARGYSN  178 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHcCcchHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhcCccc----HHHHHH
Confidence            6677788888888888888888888887777            888888888888888888888888884    466888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CC-hhHHHHHHH
Q psy16214        276 RATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD------NS-RENHNFLEE  345 (470)
Q Consensus       276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------p~-~~~~~~l~~  345 (470)
                      +|.++..+|++++|+..++++++.+|+++.++..+|.++..+|++++|+..|+++++++      |+ .++...+.+
T Consensus       179 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            89999999999999999999998889888889999999999999999999999998888      65 444444443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.96  E-value=2e-27  Score=205.74  Aligned_cols=211  Identities=17%  Similarity=0.102  Sum_probs=178.5

Q ss_pred             CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214         35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA  114 (470)
Q Consensus        35 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  114 (470)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..++++++++|+++.++..++.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            77889999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy16214        115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL  194 (470)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  194 (470)
                      ++...+... .......|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.+++.+|.
T Consensus        82 ~~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~  159 (217)
T 2pl2_A           82 AYVALYRQA-EDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred             HHHHhhhhh-hhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence            855441100 0011122788999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214        195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL  259 (470)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  259 (470)
                      ++...|++++|+..|+++++.+|+++.++..+            |.++...|++++|+..|+++.
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQAPKDLDLRVRY------------ASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHTC---------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHccCHHHHHHHHHHHh
Confidence            99999999999999999999999999999888            999999999999999998764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.95  E-value=1.2e-24  Score=214.58  Aligned_cols=315  Identities=11%  Similarity=0.019  Sum_probs=251.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHH-H
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIK-C   81 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~   81 (470)
                      ++..|..++.. ...|++++|...|++++..+|.++.+|..++..+...|++++|...|++++...| +...|..++. +
T Consensus        12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~   89 (530)
T 2ooe_A           12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYV   89 (530)
T ss_dssp             CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence            56788888884 7889999999999999999999999999999999999999999999999999999 5656655542 1


Q ss_pred             HHH--------------------------------------------------cCChHHHHHHHHHHHhcCCCCh--HHH
Q psy16214         82 NIA--------------------------------------------------LGDAPTARSNLKALQELDPDNP--AIA  109 (470)
Q Consensus        82 ~~~--------------------------------------------------~g~~~~A~~~~~~~l~~~p~~~--~~~  109 (470)
                      ...                                                  .|+++.|..+|+++++ .|.+.  ..+
T Consensus        90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~  168 (530)
T 2ooe_A           90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLW  168 (530)
T ss_dssp             HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHH
T ss_pred             HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHH
Confidence            111                                                  3556667777777777 45432  222


Q ss_pred             HHHHHHHH-------------HHHHHHHHHHHH--------------------------------------hc------C
Q psy16214        110 QESKALET-------------MAKNFEGASKAF--------------------------------------EA------N  132 (470)
Q Consensus       110 ~~l~~~~~-------------~~~~~~~a~~~~--------------------------------------~~------~  132 (470)
                      ........             ..+.+..|...+                                      ..      +
T Consensus       169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~  248 (530)
T 2ooe_A          169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE  248 (530)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred             HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence            22211110             111222222110                                      00      1


Q ss_pred             C----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHhh-cCCCChHHHHHHH
Q psy16214        133 D----YRTAMFYLDRAMDQGVASKTYKLMKAECLAH-------LNRLQ-------EAQEIANSILA-TDKQNPDAVFVRG  193 (470)
Q Consensus       133 ~----~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-------~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~la  193 (470)
                      +    ..+++..|++++..+|.++.+|..+|.++..       .|+++       +|+..++++++ ..|++..+|..++
T Consensus       249 ~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~  328 (530)
T 2ooe_A          249 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA  328 (530)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            1    1367789999999999999999999999986       79977       99999999997 7999999999999


Q ss_pred             HHHhccCChHHHHHHHHHHHhhCCChH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHH
Q psy16214        194 LCLYYDDKMDLAVNHFQLLLKLAPDHA-KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL  272 (470)
Q Consensus       194 ~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  272 (470)
                      .++...|++++|...|+++++..|.++ .++..+            +..+...|++++|...|+++++..|..    ..+
T Consensus       329 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~Al~~~~~~----~~~  392 (530)
T 2ooe_A          329 DYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY------------MKFARRAEGIKSGRMIFKKAREDARTR----HHV  392 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHTCTTCC----THH
T ss_pred             HHHHhcCCHHHHHHHHHHHhCccccCchHHHHHH------------HHHHHHhcCHHHHHHHHHHHHhccCCc----hHH
Confidence            999999999999999999999999875 577776            888888999999999999999988764    334


Q ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        273 LHNRATV-LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       273 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +...+.+ +...|++++|...|+++++..|+++.+|..++.++...|+.++|...|++++...|.
T Consensus       393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~  457 (530)
T 2ooe_A          393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  457 (530)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence            5555554 346899999999999999999999999999999999999999999999999998764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.95  E-value=4.9e-27  Score=224.23  Aligned_cols=287  Identities=15%  Similarity=0.122  Sum_probs=217.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA----AYYGNRAACYMMLGMYTYALDDAKLAVSL------DPRFSK   73 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~   73 (470)
                      +..++.+|..++..|++++|+.+|++++...|+++    .++..+|.++...|++++|+..+++++++      .|....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            34566777777777777777777777777777664    46777777777777777777777777766      455566


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214         74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT  153 (470)
Q Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  153 (470)
                      ++..+|.++..+|++++|+.++++++.+.+...                                        ..|....
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------------------~~~~~~~  167 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLG----------------------------------------DRLSEGR  167 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------------------------------------CHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh----------------------------------------chHHHHH
Confidence            777777777777777777777777665321100                                        0222345


Q ss_pred             HHHHHHHHHHHcCC-----------------HHHHHHHHHHHhhcC------CCChHHHHHHHHHHhccCChHHHHHHHH
Q psy16214        154 YKLMKAECLAHLNR-----------------LQEAQEIANSILATD------KQNPDAVFVRGLCLYYDDKMDLAVNHFQ  210 (470)
Q Consensus       154 ~~~~~a~~~~~~~~-----------------~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~  210 (470)
                      ++..+|.++...|+                 +++|+..+++++...      +....++..+|.++...|++++|+.+++
T Consensus       168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  247 (411)
T 4a1s_A          168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ  247 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            66778888888888                 888888888877653      2334588999999999999999999999


Q ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc--chHHHHHHHHHHHHHcCCHHH
Q psy16214        211 LLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN--INSKLLHNRATVLFKMGKYNE  288 (470)
Q Consensus       211 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~la~~~~~~g~~~~  288 (470)
                      +++.+.|.......      ....+...|.++...|++++|+.++++++...+....  ....++..+|.++..+|++++
T Consensus       248 ~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  321 (411)
T 4a1s_A          248 ERLRIAREFGDRAA------ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT  321 (411)
T ss_dssp             HHHHHHHHHTCHHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhcCCcHH------HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            99988765443111      0112233399999999999999999999988775322  246789999999999999999


Q ss_pred             HHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        289 AIADCTLALEKDPNY------LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       289 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      |+.++++++.+.+..      ..++..+|.++..+|++++|+.++++++++.+.
T Consensus       322 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          322 AIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            999999999885432      568999999999999999999999999999976

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.95  E-value=5.3e-27  Score=217.08  Aligned_cols=288  Identities=16%  Similarity=0.112  Sum_probs=228.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----hHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCCH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----AAYYGNRAACYMMLGMYTYALDDAKLAVSL------DPRFS   72 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~   72 (470)
                      +...++..|..++..|++++|+.+|+++++..|++    ..++..+|.++...|++++|+..+++++.+      .|...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            45678899999999999999999999999999987    478889999999999999999999999887      44557


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214         73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK  152 (470)
Q Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  152 (470)
                      .++..+|.++...|++++|+..+++++++.|......                                        ...
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------------------~~~  123 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV----------------------------------------GEA  123 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH----------------------------------------HHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch----------------------------------------HHH
Confidence            7899999999999999999999999987654332210                                        012


Q ss_pred             HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhhc------CCCChHHHHHHHHHHhccCChHHHH
Q psy16214        153 TYKLMKAECLAHLNR--------------------LQEAQEIANSILAT------DKQNPDAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~  206 (470)
                      .++..+|.++...|+                    +++|+..+++++..      .+....++..+|.++...|++++|+
T Consensus       124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  203 (338)
T 3ro2_A          124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV  203 (338)
T ss_dssp             HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            345556777777777                    77777777777654      2233557888999999999999999


Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC--ccchHHHHHHHHHHHHHcC
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN--ININSKLLHNRATVLFKMG  284 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~la~~~~~~g  284 (470)
                      ..+++++...+.......      ....+...|.++...|++++|+.++++++...+..  +.....++..+|.++..+|
T Consensus       204 ~~~~~a~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  277 (338)
T 3ro2_A          204 IAHEQRLLIAKEFGDKAA------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ  277 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCChHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence            999999887654332110      01122333999999999999999999999886653  2223678899999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        285 KYNEAIADCTLALEKDPNY------LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       285 ~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++++|+.++++++.+.|..      ..++..+|.++..+|++++|..++++++++.++
T Consensus       278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            9999999999999885543      568899999999999999999999999998764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=219.61  Aligned_cols=289  Identities=13%  Similarity=0.026  Sum_probs=236.1

Q ss_pred             chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214         36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS----KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE  111 (470)
Q Consensus        36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  111 (470)
                      .....+..+|.++...|++++|+..++++++..|.++    .++..+|.++...|++++|+.++++++.+.+..... ..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ-LG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc-HH
Confidence            3567789999999999999999999999999999984    688999999999999999999999998763221110 00


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC------------------
Q psy16214        112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVAS------KTYKLMKAECLAHLNR------------------  167 (470)
Q Consensus       112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~~~------------------  167 (470)
                      ...     .....+..+...|++++|+..+.+++...|..      ..++..+|.++...|+                  
T Consensus        86 ~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~  160 (406)
T 3sf4_A           86 EAK-----ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR  160 (406)
T ss_dssp             HHH-----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred             HHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence            011     12344555788899999999999999886643      4588899999999999                  


Q ss_pred             --HHHHHHHHHHHhhc------CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        168 --LQEAQEIANSILAT------DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       168 --~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                        +++|+..+.+++..      .|....++..+|.++...|++++|+..+++++...|.......      ....+...|
T Consensus       161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la  234 (406)
T 3sf4_A          161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERRAYSNLG  234 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHH
Confidence              99999999999876      3334568999999999999999999999999987665433111      011223349


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNI--NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSRRC  311 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la  311 (470)
                      .++...|++++|+.++++++.+.|...  .....++..+|.++...|++++|+.++++++.+.+..      ..++..+|
T Consensus       235 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la  314 (406)
T 3sf4_A          235 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLG  314 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            999999999999999999998876532  2236789999999999999999999999999985544      77899999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        312 KCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       312 ~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .++..+|++++|+.++++++++.+.
T Consensus       315 ~~~~~~g~~~~A~~~~~~al~~~~~  339 (406)
T 3sf4_A          315 NAYTALGNHDQAMHFAEKHLEISRE  339 (406)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.95  E-value=4.6e-26  Score=204.84  Aligned_cols=252  Identities=14%  Similarity=0.029  Sum_probs=193.3

Q ss_pred             HHHhcCCHHHHHHHHHHHhhc----CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214         13 TQYKLKQYSKALKCYSEAISV----CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA   88 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   88 (470)
                      .....|++++|+..|+++++.    +|.++.+++.+|.++...|++++|+..|+++++++|.++.++..+|.++...|++
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence            344567889999999999887    3456888889999999999999999999999999998888999999999888888


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL  168 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~  168 (470)
                      ++|+.+|+++++++|+++.                                              ++..+|.++...|++
T Consensus        94 ~~A~~~~~~al~~~~~~~~----------------------------------------------~~~~la~~~~~~g~~  127 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPTYNY----------------------------------------------AHLNRGIALYYGGRD  127 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCTH----------------------------------------------HHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhcCccccH----------------------------------------------HHHHHHHHHHHhccH
Confidence            8888888888877766554                                              445566677777777


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      ++|+..++++++..|+++......+.+ ...|++++|+..+++++...|.+...+. +            +..+...++.
T Consensus       128 ~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~  193 (275)
T 1xnf_A          128 KLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-I------------VEFYLGNISE  193 (275)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-H------------HHHHTTSSCH
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-H------------HHHHHHhcCH
Confidence            777777777777777776655555543 4557888888888888887777655543 2            6667777888


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDA  327 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  327 (470)
                      ++|+..+++++...|........++..+|.++..+|++++|+..+++++.++|++...   .+.++..+|++++|+..|
T Consensus       194 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            8888888888877765433246778889999999999999999999999998877443   377888888998888877

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=1.1e-22  Score=198.52  Aligned_cols=303  Identities=14%  Similarity=-0.002  Sum_probs=248.3

Q ss_pred             cHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHH
Q psy16214          3 SAEKHKEDGNTQYK----LKQYSKALKCYSEAISVCPNVAAYYGNRAACYMM----LGMYTYALDDAKLAVSLDPRFSKG   74 (470)
Q Consensus         3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~   74 (470)
                      +++.++.+|..++.    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+..|+++++.  .++.+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  113 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQA  113 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            57889999999999    89999999999999986  578999999999999    99999999999999875  58899


Q ss_pred             HHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         75 LIRQIKCNIA----LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        75 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                      ++.+|.+|..    .+++++|+.+|+++.+.  .++.++..++.++..-        .-..+++++|+.+++++++.  .
T Consensus       114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g--------~g~~~d~~~A~~~~~~a~~~--~  181 (490)
T 2xm6_A          114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEG--------DGVTRDYVMAREWYSKAAEQ--G  181 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT--------SSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC--------CCCCCCHHHHHHHHHHHHHC--C
Confidence            9999999999    89999999999999875  5778877777763210        00167889999999998876  5


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHH
Q psy16214        151 SKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKA  222 (470)
Q Consensus       151 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~  222 (470)
                      ++.++..+|.+|..    .+++++|+.+|+++++.  .++.+++.+|.++..    .+++++|+.+|+++++.  .++.+
T Consensus       182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  257 (490)
T 2xm6_A          182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIA  257 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHH
T ss_pred             CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            78888899999988    88999999999998875  467888999999886    78899999999998875  34555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc-----CCHHHHHHHH
Q psy16214        223 KETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM-----GKYNEAIADC  293 (470)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~  293 (470)
                      ...+            |.++..    .+++++|+.+|+++++..      .+.+++.+|.++...     +++++|+.+|
T Consensus       258 ~~~l------------g~~y~~g~~~~~d~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~  319 (490)
T 2xm6_A          258 QFRL------------GYILEQGLAGAKEPLKALEWYRKSAEQG------NSDGQYYLAHLYDKGAEGVAKNREQAISWY  319 (490)
T ss_dssp             HHHH------------HHHHHHTTTSSCCHHHHHHHHHHHHTTT------CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred             HHHH------------HHHHHCCCCCCCCHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence            5555            788877    788999999999887653      245688888888887     8899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy16214        294 TLALEKDPNYLKALSRRCKCFHALG---QYKECVIDAEKIYKMDNSRENHNFLEEA  346 (470)
Q Consensus       294 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~p~~~~~~~l~~~  346 (470)
                      +++++.  .++.+++.+|.+|...|   ++++|+.+|+++++.. +.+....|..+
T Consensus       320 ~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~  372 (490)
T 2xm6_A          320 TKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-EKAAQFNLGNA  372 (490)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred             HHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence            988876  45788888998888866   7888999999988873 34444444433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=1.2e-23  Score=205.54  Aligned_cols=302  Identities=13%  Similarity=0.055  Sum_probs=223.4

Q ss_pred             cHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHH
Q psy16214          3 SAEKHKEDGNTQYK----LKQYSKALKCYSEAISVCPNVAAYYGNRAACYMM----LGMYTYALDDAKLAVSLDPRFSKG   74 (470)
Q Consensus         3 ~a~~~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~   74 (470)
                      .+.+++.+|..+..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+..|+++.+.  .++.+
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a  149 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSG  149 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence            46788999999999    99999999999999875  478889999999998    88999999999999875  57899


Q ss_pred             HHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----HHHHHHHHHH------------------
Q psy16214         75 LIRQIKCNIA----LGDAPTARSNLKALQELDPDNPAIAQESKALETM----AKNFEGASKA------------------  128 (470)
Q Consensus        75 ~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~----~~~~~~a~~~------------------  128 (470)
                      ++.+|.+|..    .+++++|+..|+++++.  .++.++..++.++..    .+++..|..+                  
T Consensus       150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  227 (490)
T 2xm6_A          150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLAD  227 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999998    88999999999999875  578888888887654    3333333322                  


Q ss_pred             --Hh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc
Q psy16214        129 --FE----ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY  198 (470)
Q Consensus       129 --~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~  198 (470)
                        ..    .+++++|+.+++++++.  .++.++..+|.++..    .+++++|+.+|+++++.  .++.+++.+|.++..
T Consensus       228 ~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  303 (490)
T 2xm6_A          228 MYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK  303 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc
Confidence              21    45667777777766654  445666667777766    66777777777776654  456667777777766


Q ss_pred             c-----CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcccCccchH
Q psy16214        199 D-----DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG---KNQEAFDIYTEALKIDARNININS  270 (470)
Q Consensus       199 ~-----g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~  270 (470)
                      .     +++++|+..|+++++..  ++.++..+            |.++...|   ++++|+.+|+++++.  .    .+
T Consensus       304 ~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~l------------g~~y~~~g~~~~~~~A~~~~~~a~~~--~----~~  363 (490)
T 2xm6_A          304 GAEGVAKNREQAISWYTKSAEQG--DATAQANL------------GAIYFRLGSEEEHKKAVEWFRKAAAK--G----EK  363 (490)
T ss_dssp             CBTTBCCCHHHHHHHHHHHHHTT--CHHHHHHH------------HHHHHHSCCHHHHHHHHHHHHHHHHT--T----CH
T ss_pred             CCCCCcCCHHHHHHHHHHHHhcC--CHHHHHHH------------HHHHHhCCCcccHHHHHHHHHHHHHC--C----CH
Confidence            5     67777777777776653  33444444            77776655   677777777777765  2    34


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCC
Q psy16214        271 KLLHNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       271 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .+++++|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++++..|+
T Consensus       364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            567778888777    77788888888887775  357777888888877    77888888888888877754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.94  E-value=1.5e-25  Score=197.59  Aligned_cols=212  Identities=17%  Similarity=0.179  Sum_probs=184.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..++.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      ...|++++|+..++++++..|.++.++..++.+            ++..|++++|+..+++++...|.+..++..+|.++
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV------------LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHH------------HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            999999999999999999999998887665555            77889999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      ...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|++..++..+
T Consensus       170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  233 (243)
T 2q7f_A          170 ANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK  233 (243)
T ss_dssp             HHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888766

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.94  E-value=6.4e-26  Score=229.26  Aligned_cols=255  Identities=13%  Similarity=0.077  Sum_probs=214.4

Q ss_pred             HhcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC
Q psy16214        129 FEANDYRTAMFYLDRAM--------DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD  200 (470)
Q Consensus       129 ~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g  200 (470)
                      +..+++++|+..+++++        ..+|++..++..+|.++...|++++|+..++++++.+|+++.+++.+|.++...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            67899999999999999        8999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q psy16214        201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL  280 (470)
Q Consensus       201 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~  280 (470)
                      ++++|+..|+++++++|++..++..+            |.++...|++++ +..|+++++++|+    ...+++++|.++
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~l------------g~~~~~~g~~~~-~~~~~~al~~~P~----~~~a~~~lg~~~  544 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLAL------------AATAELAGNTDE-HKFYQTVWSTNDG----VISAAFGLARAR  544 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHH------------HHHHHHHTCCCT-TCHHHHHHHHCTT----CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCChHH-HHHHHHHHHhCCc----hHHHHHHHHHHH
Confidence            99999999999999999999999888            999999999999 9999999999999    456799999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214        281 FKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ--------YKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK  351 (470)
Q Consensus       281 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~  351 (470)
                      ..+|++++|+..|+++++++|++..+++++|.++...++        +++|...+.++....|. ......+..+...+.
T Consensus       545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~~ll~~~l~~~  624 (681)
T 2pzi_A          545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRALVLGGALDWL  624 (681)
T ss_dssp             HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999987665        44444444433323333 333444445555556


Q ss_pred             cccccchhhhccCCCCCCH--HHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhh
Q psy16214        352 RSEVKDYYKILGVTKNASS--DDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI  413 (470)
Q Consensus       352 ~~~~~~~y~~lg~~~~~~~--~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~  413 (470)
                      .+...++|++||++.....  .+|+++||++++.-.++             +..+.-+..|..|
T Consensus       625 ~~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~-------------~~r~~lvd~a~~v  675 (681)
T 2pzi_A          625 KDNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ-------------RHRYTLVDMANKV  675 (681)
T ss_dssp             TSCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH-------------HHHHHHHHHHHHH
T ss_pred             HccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh-------------HHHHHHHHHhccc
Confidence            6667779999999777665  67999999999965544             3346666666544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.93  E-value=7.7e-24  Score=187.79  Aligned_cols=211  Identities=14%  Similarity=0.048  Sum_probs=199.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..++.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQE--LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC  161 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  161 (470)
                      ..|++++|+..+++++.  ..|.+..++..++.+            ++..|++++|+..+++++...|.+..++..+|.+
T Consensus       117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  184 (252)
T 2ho1_A          117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV------------SLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL  184 (252)
T ss_dssp             HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            99999999999999999  777777776555554            6778999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      +...|++++|+..+++++...|.+..++..++.++...|++++|+..++++++..|+++.....+
T Consensus       185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998766543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=2.8e-24  Score=180.99  Aligned_cols=171  Identities=16%  Similarity=0.191  Sum_probs=164.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q psy16214        150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA  229 (470)
Q Consensus       150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  229 (470)
                      +++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|++..++..+   
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---   79 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL---   79 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH---
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH---
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999998888   


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16214        230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSR  309 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  309 (470)
                               |.++...++++.|+..+.+++...|.+    ..++..+|.++..+|++++|+..|+++++++|+++.++..
T Consensus        80 ---------~~~~~~~~~~~~a~~~~~~a~~~~~~~----~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  146 (184)
T 3vtx_A           80 ---------GSANFMIDEKQAAIDALQRAIALNTVY----ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS  146 (184)
T ss_dssp             ---------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ---------HHHHHHcCCHHHHHHHHHHHHHhCccc----hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence                     999999999999999999999999994    5679999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        310 RCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       310 la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +|.++..+|++++|+.+|+++++++|+
T Consensus       147 lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A          147 IGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            999999999999999999999999985

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.93  E-value=2.6e-24  Score=181.20  Aligned_cols=172  Identities=16%  Similarity=0.137  Sum_probs=113.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      ++..|+.+|.++...|+|++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|+.+.++..+|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      ...++++.|...+.+++.+.|                                              .+..++..+|.++
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~----------------------------------------------~~~~~~~~lg~~~  117 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNT----------------------------------------------VYADAYYKLGLVY  117 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT----------------------------------------------TCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCc----------------------------------------------cchHHHHHHHHHH
Confidence            666666665555555555554                                              4455556667777


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA  220 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  220 (470)
                      ...|++++|+..|+++++.+|.++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus       118 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          118 DSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            7777777777777777777777777777777777777777777777777777777653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=2.4e-24  Score=189.77  Aligned_cols=220  Identities=15%  Similarity=0.122  Sum_probs=141.6

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      .+..++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+..+        
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------   93 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA--------   93 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--------
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH--------
Confidence            366788888888888888888888888888888888888888888888888888888888887777665544        


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16214        117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL  196 (470)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  196 (470)
                                                            +..+|.++...|++++|+..++++++..|.++.++..+|.++
T Consensus        94 --------------------------------------~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  135 (243)
T 2q7f_A           94 --------------------------------------YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL  135 (243)
T ss_dssp             --------------------------------------HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             --------------------------------------HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                                                  444566666666666666666666666666666666667777


Q ss_pred             hccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214        197 YYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNR  276 (470)
Q Consensus       197 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~l  276 (470)
                      ...|++++|+..+++++...|++..++..+            |.++...|++++|+..+++++...|.+    ..++..+
T Consensus       136 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~l  199 (243)
T 2q7f_A          136 VKLEQPKLALPYLQRAVELNENDTEARFQF------------GMCLANEGMLDEALSQFAAVTEQDPGH----ADAFYNA  199 (243)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCCHHHHHHHHHHHHHCTTC----HHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCccc----HHHHHHH
Confidence            667777777777777776666666666555            667777777777777777777776663    4457777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        277 ATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |.++...|++++|+..++++++++|+++.++..++.+....+
T Consensus       200 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            777777777777777777777777777777776666554433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.93  E-value=2.3e-23  Score=181.11  Aligned_cols=213  Identities=11%  Similarity=-0.001  Sum_probs=198.2

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      ..+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   85 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHc-CChHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214         82 NIAL-GDAPTARSNLKALQE--LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK  158 (470)
Q Consensus        82 ~~~~-g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  158 (470)
                      +... |++++|+..++++++  ..|.+..++..++.+            +...|++++|+..++++++..|.+..++..+
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  153 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC------------SAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL  153 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            9999 999999999999999  555556666555444            7788999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDK-QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      |.++...|++++|+..+++++...| .++..+..++.++...|+.++|..+++.+....|+++.+...+
T Consensus       154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            9999999999999999999999999 9999999999999999999999999999999999998876544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.93  E-value=9.8e-24  Score=193.00  Aligned_cols=252  Identities=12%  Similarity=0.009  Sum_probs=205.9

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHc
Q psy16214         21 SKALKCYSEAISVCPNVAAYYGNRAACYMM-------LGMY-------TYALDDAKLAVS-LDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~   85 (470)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|+++++ ++|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999999999999874       5886       999999999999 7999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214         86 GDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH  164 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  164 (470)
                      |++++|...|++++++.|.++. +|..++.+            +...|++++|+..|+++++..|....++...+.+...
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~------------~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  180 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF------------ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHH------------HHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHH------------HHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999886 77666665            4445778888888889999888888877766665443


Q ss_pred             -cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhh---CCC-hHHHHHHHHHHHHHHHHHHHH
Q psy16214        165 -LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL---APD-HAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       165 -~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~p~-~~~~~~~~~~~~~~~~~~~~~  239 (470)
                       .|++++|+.+|+++++.+|+++.+|..++.++...|++++|+..|++++..   .|+ ....+..+            +
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~------------~  248 (308)
T 2ond_A          181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF------------L  248 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH------------H
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH------------H
Confidence             689999999999999999999999999999888889999999999999885   453 56666666            7


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK  312 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  312 (470)
                      ......|++++|..+++++++..|++....     .++.+           ..-.+.+.++|+++.++..+|.
T Consensus       249 ~~~~~~g~~~~a~~~~~~a~~~~p~~~~~~-----~~~~~-----------~~r~~~l~~~P~~~~~ln~lgY  305 (308)
T 2ond_A          249 AFESNIGDLASILKVEKRRFTAFREEYEGK-----ETALL-----------VDRYKFMDLYPCSASELKALGY  305 (308)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHTTTTTSSC-----HHHHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHcccccccc-----hHHHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence            777888899999999999998888765431     01111           1111556678888888776653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.93  E-value=9.7e-23  Score=183.08  Aligned_cols=229  Identities=12%  Similarity=-0.016  Sum_probs=147.6

Q ss_pred             CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCChHHH
Q psy16214         34 CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA----LGDAPTARSNLKALQELDPDNPAIA  109 (470)
Q Consensus        34 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~  109 (470)
                      +|.++.+++.+|.++...|++++|+..|+++++  |+++.+++.+|.++..    .+++++|+.+|+++++..       
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------   72 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------   72 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-------
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-------
Confidence            355666666666666666666666666666666  5566666666666666    666666666666665532       


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCC
Q psy16214        110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQN  185 (470)
Q Consensus       110 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~  185 (470)
                                                               ++.++..+|.++..    .+++++|+..+++++..  ++
T Consensus        73 -----------------------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~  109 (273)
T 1ouv_A           73 -----------------------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KY  109 (273)
T ss_dssp             -----------------------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred             -----------------------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CC
Confidence                                                     22334445555555    66666666666666654  35


Q ss_pred             hHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q psy16214        186 PDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTE  257 (470)
Q Consensus       186 ~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~  257 (470)
                      +.+++.+|.++..    .+++++|+.+|+++++..  +..++..+            |.++..    .+++++|+.+|++
T Consensus       110 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l------------g~~~~~~~~~~~~~~~A~~~~~~  175 (273)
T 1ouv_A          110 AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL------------GSLYDAGRGTPKDLKKALASYDK  175 (273)
T ss_dssp             HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH------------HHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH------------HHHHHcCCCCCCCHHHHHHHHHH
Confidence            6666666666666    666666666666666654  34444444            666666    6777777777777


Q ss_pred             HHhhcccCccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHH
Q psy16214        258 ALKIDARNININSKLLHNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEK  329 (470)
Q Consensus       258 al~~~p~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~  329 (470)
                      +++..+      +.++..+|.++..    .+++++|+.+++++++..|  +.+++.+|.++..    .+++++|+.+|++
T Consensus       176 a~~~~~------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~  247 (273)
T 1ouv_A          176 ACDLKD------SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKK  247 (273)
T ss_dssp             HHHTTC------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred             HHHCCC------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence            766532      3456777777777    7777777777777777654  6677777777777    7777777777777


Q ss_pred             HHhcCCC
Q psy16214        330 IYKMDNS  336 (470)
Q Consensus       330 a~~~~p~  336 (470)
                      ++++.|+
T Consensus       248 a~~~~~~  254 (273)
T 1ouv_A          248 GCKLGAK  254 (273)
T ss_dssp             HHHHTCH
T ss_pred             HHHcCCH
Confidence            7777764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.93  E-value=1.2e-22  Score=182.42  Aligned_cols=209  Identities=11%  Similarity=0.063  Sum_probs=175.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                      +|.++.+++.+|.++...|++++|+.+|+++++                                               
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-----------------------------------------------   34 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD-----------------------------------------------   34 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------------------------
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------------------------------------------
Confidence            466777777777777777777777777777655                                               


Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCCh
Q psy16214        148 GVASKTYKLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDH  219 (470)
Q Consensus       148 ~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~  219 (470)
                       |.++.++..+|.++..    .+++++|+..++++++..  ++.+++.+|.++..    .+++++|+..|+++++..  +
T Consensus        35 -~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~  109 (273)
T 1ouv_A           35 -LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y  109 (273)
T ss_dssp             -TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C
T ss_pred             -CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C
Confidence             3344556778888998    999999999999999875  89999999999999    999999999999999874  6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH----cCCHHHHHH
Q psy16214        220 AKAKETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK----MGKYNEAIA  291 (470)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~----~g~~~~A~~  291 (470)
                      +.++..+            |.++..    .+++++|+.+|+++++..+      ..++.++|.++..    .+++++|+.
T Consensus       110 ~~a~~~l------------g~~~~~~~~~~~~~~~A~~~~~~a~~~~~------~~a~~~lg~~~~~~~~~~~~~~~A~~  171 (273)
T 1ouv_A          110 AEGCASL------------GGIYHDGKVVTRDFKKAVEYFTKACDLND------GDGCTILGSLYDAGRGTPKDLKKALA  171 (273)
T ss_dssp             HHHHHHH------------HHHHHHCSSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             ccHHHHH------------HHHHHcCCCcccCHHHHHHHHHHHHhcCc------HHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            7777777            999999    9999999999999998763      3578999999999    999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy16214        292 DCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDNSRENHNFLEEAKRL  349 (470)
Q Consensus       292 ~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~  349 (470)
                      +++++++.  .++.+++.+|.++..    .+++++|+.+|+++++..| ......+..+...
T Consensus       172 ~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~  230 (273)
T 1ouv_A          172 SYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYN  230 (273)
T ss_dssp             HHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred             HHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHc
Confidence            99999987  468999999999999    9999999999999999987 5555555555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.92  E-value=7.9e-22  Score=194.51  Aligned_cols=296  Identities=10%  Similarity=-0.057  Sum_probs=241.0

Q ss_pred             HHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214         27 YSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP  106 (470)
Q Consensus        27 ~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  106 (470)
                      ++++++.+|.+..+|..++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|++++...| +.
T Consensus         2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~   79 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI   79 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred             hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence            678999999999999999984 7899999999999999999999999999999999999999999999999999999 57


Q ss_pred             HHHHHHHHHHH-H-----------HHHHHHHHH-----------------HH----------hcCCHHHHHHHHHHHHHh
Q psy16214        107 AIAQESKALET-M-----------AKNFEGASK-----------------AF----------EANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus       107 ~~~~~l~~~~~-~-----------~~~~~~a~~-----------------~~----------~~~~~~~A~~~~~~~l~~  147 (470)
                      ..|..++.... .           ...++.+..                 ..          ..|+++.|..+|++++. 
T Consensus        80 ~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-  158 (530)
T 2ooe_A           80 DLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-  158 (530)
T ss_dssp             HHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-
Confidence            77776664221 1           112222211                 11          15778889999999888 


Q ss_pred             CCCCH--HHHHHHHH---------------------------------------------------------------HH
Q psy16214        148 GVASK--TYKLMKAE---------------------------------------------------------------CL  162 (470)
Q Consensus       148 ~p~~~--~~~~~~a~---------------------------------------------------------------~~  162 (470)
                      .|...  .++...+.                                                               +.
T Consensus       159 ~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~  238 (530)
T 2ooe_A          159 NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQ  238 (530)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHH
Confidence            45432  12111110                                                               00


Q ss_pred             HHc------CC----HHHHHHHHHHHhhcCCCChHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHh-hCC
Q psy16214        163 AHL------NR----LQEAQEIANSILATDKQNPDAVFVRGLCLYY-------DDKMD-------LAVNHFQLLLK-LAP  217 (470)
Q Consensus       163 ~~~------~~----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~l~-~~p  217 (470)
                      ...      ++    ...++..|++++...|.++.+|+.+|.++..       .|+++       +|+..|+++++ ..|
T Consensus       239 ~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p  318 (530)
T 2ooe_A          239 WEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK  318 (530)
T ss_dssp             HHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence            000      11    1367789999999999999999999999986       79987       99999999997 899


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214        218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (470)
                      ++..++..+            +..+...|++++|...|++++...|.++   ..+|..++.++.+.|++++|...|++++
T Consensus       319 ~~~~l~~~~------------~~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          319 KNMLLYFAY------------ADYEESRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             SCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999888            9999999999999999999999988853   3579999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCC-hhHH
Q psy16214        298 EKDPNYLKALSRRCKC-FHALGQYKECVIDAEKIYKMDNS-RENH  340 (470)
Q Consensus       298 ~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~-~~~~  340 (470)
                      +..|.....+...+.+ +...|++++|...|+++++..|+ ..+.
T Consensus       384 ~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~  428 (530)
T 2ooe_A          384 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV  428 (530)
T ss_dssp             TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence            9999888888777766 34699999999999999999996 4443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=4e-24  Score=207.13  Aligned_cols=214  Identities=14%  Similarity=0.070  Sum_probs=200.1

Q ss_pred             CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16214         19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY-TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKA   97 (470)
Q Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (470)
                      .+++|+..+.++....|.++.+++.+|.++...|++ ++|+..|+++++++|+++.++..+|.+|..+|++++|+.+|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            367788889888889999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q psy16214         98 LQELDPDNPAIAQESKALETMAKNFEGASKAFEA---------NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL---  165 (470)
Q Consensus        98 ~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---  165 (470)
                      +++++|+ ..++..++.+            +...         |++++|+..++++++.+|++..++..+|.++...   
T Consensus       163 al~~~p~-~~~~~~lg~~------------~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~  229 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMV------------LRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFN  229 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHH------------HTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHH------------HHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999 6777666666            5555         8899999999999999999999999999999999   


Q ss_pred             -----CCHHHHHHHHHHHhhcCC---CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214        166 -----NRLQEAQEIANSILATDK---QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE  237 (470)
Q Consensus       166 -----~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  237 (470)
                           |++++|+..|+++++++|   .++.+++.+|.++...|++++|+..|+++++++|++..++..+           
T Consensus       230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l-----------  298 (474)
T 4abn_A          230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE-----------  298 (474)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------
T ss_pred             hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----------
Confidence                 999999999999999999   9999999999999999999999999999999999999988888           


Q ss_pred             HHHHHHhcCCHHHHHHHHHH
Q psy16214        238 EGNEKFVAGKNQEAFDIYTE  257 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~  257 (470)
                       +.++...|++++|+..+.+
T Consensus       299 -~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          299 -QQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             -HHHHHHHHHHHHHHHHTTT
T ss_pred             -HHHHHHHHHHHHHHHHhcc
Confidence             8888888999888876654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=5.8e-23  Score=182.13  Aligned_cols=207  Identities=14%  Similarity=0.009  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      +.+++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++..|.+.           
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----------  105 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA-----------  105 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-----------
Confidence            455555555555555555555555555555555555555555555555555555555555544444332           


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh--cCCCChHHHHHHHHH
Q psy16214        118 MAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA--TDKQNPDAVFVRGLC  195 (470)
Q Consensus       118 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~  195 (470)
                                                         .++..+|.++...|++++|+..+++++.  ..|.++.++..+|.+
T Consensus       106 -----------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A          106 -----------------------------------RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLV  150 (252)
T ss_dssp             -----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred             -----------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence                                               2333444455555555555555555555  444444455555555


Q ss_pred             HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214        196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN  275 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  275 (470)
                      +...|++++|+..+++++...|.+..++..+            |.++...|++++|+..+++++...|.    ...++..
T Consensus       151 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~  214 (252)
T 2ho1_A          151 SLQMKKPAQAKEYFEKSLRLNRNQPSVALEM------------ADLLYKEREYVPARQYYDLFAQGGGQ----NARSLLL  214 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTSCC----CHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCcccHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcC----cHHHHHH
Confidence            5555555555555555555554444444433            44444444444444444444444444    2233444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214        276 RATVLFKMGKYNEAIADCTLALEKDPNYLKA  306 (470)
Q Consensus       276 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (470)
                      ++.++...|++++|..+++++++..|+++.+
T Consensus       215 ~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          215 GIRLAKVFEDRDTAASYGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence            4444444444444444444444444444433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.92  E-value=5.3e-23  Score=179.57  Aligned_cols=173  Identities=17%  Similarity=0.238  Sum_probs=143.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCP-NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      +++.++.+|..++..|+|++|+..|+++++.+| .+..+++.+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            578899999999999999999999999999998 8888999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC  161 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  161 (470)
                      +..+|++++|+..++++++++|+++..+..++.                                       ++..+|.+
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~---------------------------------------~~~~~g~~  126 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAI---------------------------------------YYLKEGQK  126 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH---------------------------------------HHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH---------------------------------------HHHHHhHH
Confidence            999999999999999999999998876544333                                       34557777


Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCC--ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQ--NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH  219 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  219 (470)
                      +...|++++|+..++++++.+|+  ++.+++.+|.++...|     ...++++..+.+..
T Consensus       127 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~  181 (228)
T 4i17_A          127 FQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSN  181 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTC
T ss_pred             HHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCC
Confidence            77777777777777777777777  7777777777775433     33445555554444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=1e-22  Score=176.92  Aligned_cols=216  Identities=17%  Similarity=0.090  Sum_probs=158.8

Q ss_pred             cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214         33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES  112 (470)
Q Consensus        33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  112 (470)
                      ..|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+..+    
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----   78 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI----   78 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH----
Confidence            4677888888999999999999999999999999999888888889999888888888888888888777766554    


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHhh--cCCCChHHH
Q psy16214        113 KALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL-NRLQEAQEIANSILA--TDKQNPDAV  189 (470)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~--~~p~~~~~~  189 (470)
                                                                +..+|.++... |++++|+..+++++.  ..|.+..++
T Consensus        79 ------------------------------------------~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  116 (225)
T 2vq2_A           79 ------------------------------------------NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN  116 (225)
T ss_dssp             ------------------------------------------HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred             ------------------------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence                                                      34456666666 666666666666666  445556667


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cCccc
Q psy16214        190 FVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA-RNINI  268 (470)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~  268 (470)
                      ..+|.++...|++++|+..++++++..|++..++..+            |.++...|++++|+..+++++...| .+   
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~---  181 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL------------ARTKMLAGQLGDADYYFKKYQSRVEVLQ---  181 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHHCSCC---
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCC---
Confidence            7777777777777777777777777777766666665            7777777777777777777777766 53   


Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR  310 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (470)
                       ...+..++.++...|++++|..+++.++..+|+++.+...+
T Consensus       182 -~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          182 -ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence             34466667777777777777777777777777776665443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.92  E-value=1.6e-23  Score=202.83  Aligned_cols=215  Identities=16%  Similarity=0.111  Sum_probs=201.5

Q ss_pred             ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy16214         87 DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDY-RTAMFYLDRAMDQGVASKTYKLMKAECLAHL  165 (470)
Q Consensus        87 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~  165 (470)
                      .+++|+..+..+....|.+..++..++.+            +...|++ ++|+..++++++.+|++..++..+|.++...
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~------------~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  150 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKA------------LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK  150 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHH------------HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHH------------HHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            46778888888888899999988666665            7888999 9999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc---------CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHH
Q psy16214        166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD---------DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKK  236 (470)
Q Consensus       166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~  236 (470)
                      |++++|+.+|+++++.+|+ ..++..+|.++...         |++++|+..|+++++++|++..++..+          
T Consensus       151 g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l----------  219 (474)
T 4abn_A          151 GDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL----------  219 (474)
T ss_dssp             TCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH----------
T ss_pred             CCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH----------
Confidence            9999999999999999999 79999999999999         999999999999999999999999888          


Q ss_pred             HHHHHHHhc--------CCHHHHHHHHHHHHhhcc---cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214        237 EEGNEKFVA--------GKNQEAFDIYTEALKIDA---RNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK  305 (470)
Q Consensus       237 ~~~~~~~~~--------~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  305 (470)
                        |.++...        |++++|+..|++++.++|   .    .+.++.++|.++..+|++++|+..|+++++++|+++.
T Consensus       220 --g~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          220 --GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS----NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             --HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             --HHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence              9999988        999999999999999999   6    5678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        306 ALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       306 ~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                      ++..++.++..+|++++|+..+.++
T Consensus       294 a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          294 PQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999877654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.91  E-value=3.3e-23  Score=186.13  Aligned_cols=224  Identities=15%  Similarity=0.069  Sum_probs=197.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..++.+|.+++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|.++.++..+|.++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  121 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  121 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      ..+|++++|+..+++++++.|++......+..             ....|++++|+..+.+++...|.+...+. ++.++
T Consensus       122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~  187 (275)
T 1xnf_A          122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL-------------AEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFY  187 (275)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-------------HHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCChHHHHHHHH-------------HHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHH
Confidence            99999999999999999999999865433221             24458999999999999999998876654 78888


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCC----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQN----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  238 (470)
                      ...++.++|+..+.+++...|..    +.++..+|.++...|++++|+..|++++..+|++...+               
T Consensus       188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---------------  252 (275)
T 1xnf_A          188 LGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---------------  252 (275)
T ss_dssp             TTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---------------
T ss_pred             HHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---------------
Confidence            88999999999999999887743    68999999999999999999999999999999875433               


Q ss_pred             HHHHHhcCCHHHHHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIY  255 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~  255 (470)
                      +.++...+++++|++.+
T Consensus       253 ~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          253 RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHhhHHHH
Confidence            66777888999998887

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.91  E-value=3.9e-22  Score=182.33  Aligned_cols=227  Identities=11%  Similarity=0.010  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-------cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214         55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIA-------LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK  127 (470)
Q Consensus        55 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  127 (470)
                      ++|+..|++++..+|.++.+|+.+|..+..       .|++.                                      
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~--------------------------------------   74 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMN--------------------------------------   74 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCH--------------------------------------
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchh--------------------------------------
Confidence            688889999999999999999998888864       35540                                      


Q ss_pred             HHhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-HHHHHHHHHhccCChHHH
Q psy16214        128 AFEANDYRTAMFYLDRAMD-QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-AVFVRGLCLYYDDKMDLA  205 (470)
Q Consensus       128 ~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A  205 (470)
                       ...+.+++|+..+++++. ..|++..+|..+|.++...|++++|...|+++++..|.++. +|..+|.++...|++++|
T Consensus        75 -~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A  153 (308)
T 2ond_A           75 -NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG  153 (308)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred             -hcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHH
Confidence             001223334444444444 34555555566666666677777777777777777776665 677777777777777777


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC
Q psy16214        206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF-VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG  284 (470)
Q Consensus       206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g  284 (470)
                      +..|+++++..|.+..++...            +.... ..|++++|+.+|+++++..|++    ..+|..++.++..+|
T Consensus       154 ~~~~~~a~~~~p~~~~~~~~~------------a~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~~~~g  217 (308)
T 2ond_A          154 RMIFKKAREDARTRHHVYVTA------------ALMEYYCSKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLN  217 (308)
T ss_dssp             HHHHHHHHTSTTCCTHHHHHH------------HHHHHHTSCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHCC
Confidence            777777777776665554332            33322 2577777777777777777763    455777777777777


Q ss_pred             CHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        285 KYNEAIADCTLALEK---DP-NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       285 ~~~~A~~~~~~al~~---~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++++|+..|++++..   .| +...+|..++..+...|++++|...++++++..|+
T Consensus       218 ~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~  273 (308)
T 2ond_A          218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence            777777777777774   44 35667777777777777777777777777777775

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.91  E-value=3.3e-23  Score=195.81  Aligned_cols=312  Identities=9%  Similarity=-0.019  Sum_probs=233.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCC---chh--HHHHHH--HHHHHHcCChHHHH-----------HHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCP---NVA--AYYGNR--AACYMMLGMYTYAL-----------DDAKLAV   65 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~--~~~~~~--a~~~~~~g~~~~A~-----------~~~~~al   65 (470)
                      +...++....+...+++++|..+++++.+.-+   .+.  ..++.+  .......+.+..+.           ..++++ 
T Consensus        12 v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i-   90 (383)
T 3ulq_A           12 IGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI-   90 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH-
Confidence            45566777788999999999999999865422   122  222322  22233344444444           455543 


Q ss_pred             hcCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16214         66 SLDPRFSK------GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMF  139 (470)
Q Consensus        66 ~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  139 (470)
                      +..|....      .++.+|.++...|++++|+..+++++++.+..+... ..+.+     ....|..+...|++++|+.
T Consensus        91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~a~~-----~~~lg~~~~~~~~~~~A~~  164 (383)
T 3ulq_A           91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI-EKAEF-----FFKMSESYYYMKQTYFSMD  164 (383)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHH-HHHHH-----HHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHH-HHHHH-----HHHHHHHHHHcCCHHHHHH
Confidence            32333333      344599999999999999999999998732211100 01111     2344555788899999999


Q ss_pred             HHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHhccCChHHHH
Q psy16214        140 YLDRAMDQGVAS-------KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP------DAVFVRGLCLYYDDKMDLAV  206 (470)
Q Consensus       140 ~~~~~l~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~  206 (470)
                      ++.+++...+..       ..++..+|.++...|++++|+..+++++...+...      .++.++|.++...|++++|+
T Consensus       165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~  244 (383)
T 3ulq_A          165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI  244 (383)
T ss_dssp             HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            999999884433       45788999999999999999999999998765443      58999999999999999999


Q ss_pred             HHHHHHHh-----hC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHH
Q psy16214        207 NHFQLLLK-----LA-PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRAT  278 (470)
Q Consensus       207 ~~~~~~l~-----~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~  278 (470)
                      .++++++.     .+ |....++..+            |.++...|++++|+.++++++.+.+.  ++. ....+..++.
T Consensus       245 ~~~~~al~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l~~  311 (383)
T 3ulq_A          245 PYFKRAIAVFEESNILPSLPQAYFLI------------TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVI-YLSEFEFLKS  311 (383)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHH
Confidence            99999999     45 6666666666            99999999999999999999988654  222 2233677999


Q ss_pred             HHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        279 VLFKMGK---YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       279 ~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++...|+   +.+|+..+++. ...|....++..+|.+|..+|++++|..+|++++++...
T Consensus       312 ~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          312 LYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            9999999   88888888876 334555778999999999999999999999999987653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.91  E-value=1.6e-22  Score=194.65  Aligned_cols=301  Identities=9%  Similarity=-0.070  Sum_probs=224.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY---TYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      ..+|..++..|++++|+..|+++.+.  .++.+++.+|.+|...|++   ++|+..|+++++.   ++.+++.+|.++..
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence            56799999999999999999999876  5688899999999999998   9999999999976   77899999997777


Q ss_pred             cC-----ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-----------------------HHHHHHHHhcCC---
Q psy16214         85 LG-----DAPTARSNLKALQELDPDNPAIAQESKALETMAKN-----------------------FEGASKAFEAND---  133 (470)
Q Consensus        85 ~g-----~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-----------------------~~~a~~~~~~~~---  133 (470)
                      .+     ++++|+.+|+++++.  .++.++..++.++...+.                       +..+..+...+.   
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred             CCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence            76     889999999999984  455577788887754322                       222333444443   


Q ss_pred             -HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc----CChHHH
Q psy16214        134 -YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN---RLQEAQEIANSILATDKQNPDAVFVRGLCLYYD----DKMDLA  205 (470)
Q Consensus       134 -~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A  205 (470)
                       .+.+..++..+...+|.   ++..+|.+|...|   ++++|+..|+++....|.....++.+|.+|...    +++++|
T Consensus       160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A  236 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA  236 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred             CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence             34444445554444444   8899999999999   999999999999999999999999999999766    799999


Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH
Q psy16214        206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNE-K--FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK  282 (470)
Q Consensus       206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~  282 (470)
                      +.+|+++.   |+++.++..+            |.+ +  ...+++++|+.+|+++.+..      .+.+++++|.+|. 
T Consensus       237 ~~~~~~aa---~g~~~a~~~L------------g~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-  294 (452)
T 3e4b_A          237 QALLEKIA---PGYPASWVSL------------AQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-  294 (452)
T ss_dssp             HHHHHHHG---GGSTHHHHHH------------HHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-
T ss_pred             HHHHHHHc---CCCHHHHHHH------------HHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-
Confidence            99999998   8888888888            887 4  57899999999999998654      3567999999998 


Q ss_pred             cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCChhHHHHHH
Q psy16214        283 MG-----KYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDNSRENHNFLE  344 (470)
Q Consensus       283 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l~  344 (470)
                      .|     ++++|+.+|+++.   |.++.+++++|.+|..    ..++++|+.+|+++.+... .+....|.
T Consensus       295 ~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~A~~~Lg  361 (452)
T 3e4b_A          295 EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSADFAIA  361 (452)
T ss_dssp             HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HHHHHHHH
Confidence            66     9999999999999   9999999999999987    4599999999999998654 44444443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.91  E-value=8.9e-23  Score=178.11  Aligned_cols=186  Identities=17%  Similarity=0.093  Sum_probs=124.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q psy16214        150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDK-QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR  228 (470)
Q Consensus       150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  228 (470)
                      .++..+..+|.++...|++++|+..|++++..+| .+..+++.+|.++...|++++|+..+++++..+|++..++..+  
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--   82 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK--   82 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH--
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH--
Confidence            3455666666666666666666666666666666 6666666666666666666666666666666666666666655  


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Q psy16214        229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI---NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN--Y  303 (470)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~  303 (470)
                                |.++...|++++|+..++++++..|+++..   ...++..+|.++..+|++++|+..|+++++++|+  +
T Consensus        83 ----------~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  152 (228)
T 4i17_A           83 ----------SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK  152 (228)
T ss_dssp             ----------HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH
T ss_pred             ----------HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc
Confidence                      666666666666666666666666664321   1144666666666666666666666666666666  6


Q ss_pred             HHHHHHHHHHHHHhCCH---------------------------HHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q psy16214        304 LKALSRRCKCFHALGQY---------------------------KECVIDAEKIYKMDNS-RENHNFLEEAK  347 (470)
Q Consensus       304 ~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~a~~~~p~-~~~~~~l~~~~  347 (470)
                      +.++..+|.++...|+.                           ++|+.+|+++++++|+ .++...+..+.
T Consensus       153 ~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          153 TDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            66666666666666666                           9999999999999998 56666665543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.90  E-value=1.4e-22  Score=195.11  Aligned_cols=307  Identities=11%  Similarity=-0.002  Sum_probs=216.5

Q ss_pred             HHHHHHHHHHHHhcCCH---HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcCCCCHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQY---SKALKCYSEAISVCPNVAAYYGNRAACYMMLG-----MYTYALDDAKLAVSLDPRFSKGL   75 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~   75 (470)
                      +++++.+|..++..|++   ++|+.+|+++++.   ++.+++++|.++...+     ++++|+..|+++++.+  ++.++
T Consensus        35 ~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~  109 (452)
T 3e4b_A           35 SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGNTL  109 (452)
T ss_dssp             CTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSSCH
T ss_pred             HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHHHH
Confidence            45566778888888888   8899999988866   6778888888776665     7788999998888743  44477


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHH-----------------------HHHHHHHHHhc
Q psy16214         76 IRQIKCNIALGDAPTARSNLKALQEL-DPDNPAIAQESKALETMAK-----------------------NFEGASKAFEA  131 (470)
Q Consensus        76 ~~la~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~  131 (470)
                      +.+|.+|...+...++...++..... .+.++.++..++.++...+                       .+..+..+...
T Consensus       110 ~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~  189 (452)
T 3e4b_A          110 IPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKK  189 (452)
T ss_dssp             HHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            77777777766544333332222221 1233445555555554333                       12333345556


Q ss_pred             C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHhhcCCCChHHHHHHHHH-H--hccCC
Q psy16214        132 N---DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL----NRLQEAQEIANSILATDKQNPDAVFVRGLC-L--YYDDK  201 (470)
Q Consensus       132 ~---~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~--~~~g~  201 (470)
                      |   ++++|+.+++++....|.....+..+|.+|...    +++++|+.+|+++.   |.++.+++.+|.+ +  ...++
T Consensus       190 g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d  266 (452)
T 3e4b_A          190 QQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGD  266 (452)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC
T ss_pred             CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC
Confidence            7   899999999999999999999989999999766    79999999999998   8999999999999 4  57899


Q ss_pred             hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214        202 MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG-----KNQEAFDIYTEALKIDARNININSKLLHNR  276 (470)
Q Consensus       202 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~l  276 (470)
                      +++|+.+|+++.+.  .++.+...+            |.+|. .|     ++++|+.+|+++.   +.    .+.+++++
T Consensus       267 ~~~A~~~~~~Aa~~--g~~~A~~~L------------g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g----~~~A~~~L  324 (452)
T 3e4b_A          267 VEQMMKYLDNGRAA--DQPRAELLL------------GKLYY-EGKWVPADAKAAEAHFEKAV---GR----EVAADYYL  324 (452)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHH------------HHHHH-HCSSSCCCHHHHHHHHHTTT---TT----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHH------------HHHHH-cCCCCCCCHHHHHHHHHHHh---CC----CHHHHHHH
Confidence            99999999999865  467777777            88888 55     9999999999998   66    46779999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214        277 ATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDNSRENHNFL  343 (470)
Q Consensus       277 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p~~~~~~~l  343 (470)
                      |.+|..    ..++++|+.+|+++.+  +.++.+.+++|.+|..    ..++.+|..+|+++.+..+ ......+
T Consensus       325 g~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l  396 (452)
T 3e4b_A          325 GQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLA  396 (452)
T ss_dssp             HHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHH
T ss_pred             HHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHH
Confidence            999887    4499999999999987  4668899999999985    5699999999999999876 3333333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=5.3e-23  Score=206.75  Aligned_cols=174  Identities=19%  Similarity=0.202  Sum_probs=167.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        147 QGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       147 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      ..|+++.++.++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+..|+++++++|++..++..+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214        227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA  306 (470)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  306 (470)
                                  |.++...|++++|++.|+++++++|+    ...++.++|.++..+|++++|+..|+++++++|+++.+
T Consensus        84 ------------g~~l~~~g~~~~A~~~~~kAl~l~P~----~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a  147 (723)
T 4gyw_A           84 ------------GNTLKEMQDVQGALQCYTRAIQINPA----FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA  147 (723)
T ss_dssp             ------------HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             ------------HHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence                        99999999999999999999999999    56789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        307 LSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +.++|.++..+|++++|.+.+++++++.|+
T Consensus       148 ~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          148 YCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            999999999999999999999999987653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.90  E-value=1.1e-22  Score=204.59  Aligned_cols=175  Identities=18%  Similarity=0.102  Sum_probs=138.4

Q ss_pred             cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214         33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES  112 (470)
Q Consensus        33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  112 (470)
                      ..|+++.++.++|.++..+|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++..++..+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35677777777777777777777777777777777777777777777777777777777777777777777777776655


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHH
Q psy16214        113 KALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVR  192 (470)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l  192 (470)
                      +.+            +...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.++.++
T Consensus        84 g~~------------l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L  151 (723)
T 4gyw_A           84 GNT------------LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL  151 (723)
T ss_dssp             HHH------------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             HHH------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhh
Confidence            555            55567777777777777777788888888899999999999999999999999999999999999


Q ss_pred             HHHHhccCChHHHHHHHHHHHhhCCCh
Q psy16214        193 GLCLYYDDKMDLAVNHFQLLLKLAPDH  219 (470)
Q Consensus       193 a~~~~~~g~~~~A~~~~~~~l~~~p~~  219 (470)
                      |.++...|++++|++.+++++++.|+.
T Consensus       152 ~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          152 AHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHHhcccHHHHHHHHHHHHHhChhH
Confidence            999999999999999999998876543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.90  E-value=1.7e-22  Score=192.68  Aligned_cols=255  Identities=15%  Similarity=0.089  Sum_probs=204.1

Q ss_pred             chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214         36 NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS----KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQE  111 (470)
Q Consensus        36 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  111 (470)
                      .....+..+|.+++..|++++|+..|++++++.|+++    .++..+|.++...|++++|+..+++++.+....      
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------  119 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------  119 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc------
Confidence            4466677888888999999999999999998888876    578888888888899888888888877642110      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc------CCCC
Q psy16214        112 SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT------DKQN  185 (470)
Q Consensus       112 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~  185 (470)
                                                        ...|....++..+|.++...|++++|+..+++++..      .|..
T Consensus       120 ----------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  165 (411)
T 4a1s_A          120 ----------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE  165 (411)
T ss_dssp             ----------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             ----------------------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHH
Confidence                                              001233456778899999999999999999999887      4556


Q ss_pred             hHHHHHHHHHHhccCC-----------------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        186 PDAVFVRGLCLYYDDK-----------------MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       186 ~~~~~~la~~~~~~g~-----------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      ..++..+|.++...|+                 +++|+.++++++.+.+......      .....+...|.++...|++
T Consensus       166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~------~~~~~~~~la~~~~~~g~~  239 (411)
T 4a1s_A          166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG------AQGRACGNLGNTYYLLGDF  239 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHHcCCh
Confidence            7799999999999999                 9999999999887643221100      0111223349999999999


Q ss_pred             HHHHHHHHHHHhhcccCcc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCH
Q psy16214        249 QEAFDIYTEALKIDARNIN--INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSRRCKCFHALGQY  320 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~  320 (470)
                      ++|+.++++++.+.+....  ....++..+|.++..+|++++|+.++++++.+.|..      ..++..+|.++..+|++
T Consensus       240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  319 (411)
T 4a1s_A          240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF  319 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999998775322  234589999999999999999999999999987754      78899999999999999


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy16214        321 KECVIDAEKIYKMDNS  336 (470)
Q Consensus       321 ~~A~~~~~~a~~~~p~  336 (470)
                      ++|+.++++++++.+.
T Consensus       320 ~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          320 NTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.90  E-value=3.1e-22  Score=178.53  Aligned_cols=196  Identities=12%  Similarity=0.124  Sum_probs=171.9

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGL   75 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~   75 (470)
                      .+++.++.+|..++..|+|++|+..|++++..+|++   +.+++.+|.+++.+|++++|+..|+++++.+|++   +.++
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            367899999999999999999999999999999998   8999999999999999999999999999998854   6789


Q ss_pred             HHHHHHHHH--------cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         76 IRQIKCNIA--------LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        76 ~~la~~~~~--------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                      +.+|.++..        +|++++|+..|+++++..|+++.+...+..+......                          
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~--------------------------  146 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK--------------------------  146 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH--------------------------
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH--------------------------
Confidence            999999999        9999999999999999999998776554443222211                          


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC---hHHHHHHHHHHhcc----------CChHHHHHHHHHHHh
Q psy16214        148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN---PDAVFVRGLCLYYD----------DKMDLAVNHFQLLLK  214 (470)
Q Consensus       148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~  214 (470)
                         ....++.+|.++...|++++|+..|+++++..|++   +.+++.+|.++...          |++++|+..|+++++
T Consensus       147 ---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          147 ---LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence               12336789999999999999999999999999984   56999999999877          899999999999999


Q ss_pred             hCCChHHHHHHH
Q psy16214        215 LAPDHAKAKETY  226 (470)
Q Consensus       215 ~~p~~~~~~~~~  226 (470)
                      ..|+++.+....
T Consensus       224 ~~p~~~~~~~a~  235 (261)
T 3qky_A          224 IFPDSPLLRTAE  235 (261)
T ss_dssp             HCTTCTHHHHHH
T ss_pred             HCCCChHHHHHH
Confidence            999997665544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.89  E-value=2.6e-22  Score=189.67  Aligned_cols=243  Identities=13%  Similarity=0.051  Sum_probs=186.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhc---CC---chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------CHH
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISV---CP---NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-------FSK   73 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~p---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~~   73 (470)
                      ++.+|..++..|+|++|+.+|++++..   .|   ..+.++..+|.++..+|++++|+..+++++++.+.       ...
T Consensus       106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  185 (383)
T 3ulq_A          106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ  185 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence            444888888888888888888888876   22   24678888888888888888888888888887433       245


Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214         74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKT  153 (470)
Q Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~  153 (470)
                      ++..+|.+|..+|++++|+.++++++++.+.....                                        +....
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------------------------~~~~~  225 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP----------------------------------------QLMGR  225 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------------------------HHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh----------------------------------------HHHHH
Confidence            77888888888888888888888887754432211                                        01124


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhh-----cC-CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILA-----TD-KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK  227 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  227 (470)
                      ++.++|.++...|++++|+.++++++.     .+ |..+.++..+|.++...|++++|+.++++++.+.+......... 
T Consensus       226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-  304 (383)
T 3ulq_A          226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS-  304 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-
Confidence            667799999999999999999999998     45 77788999999999999999999999999998754321111100 


Q ss_pred             HHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214        228 RAKLLKAKKEEGNEKFVAGK---NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP  301 (470)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (470)
                            .....+.++...|+   +.+|+..+++. ...|.    ...++..+|.++..+|++++|+.++++++++..
T Consensus       305 ------~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~----~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          305 ------EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYAD----LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             ------HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             ------HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence                  01123899999999   78888888776 22222    567889999999999999999999999998744

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.89  E-value=3.2e-22  Score=184.79  Aligned_cols=253  Identities=13%  Similarity=0.053  Sum_probs=203.5

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF----SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK  113 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  113 (470)
                      ...+...|.++...|++++|+..++++++.+|.+    ..++..+|.++...|++++|+..+++++.+.+..        
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------   76 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--------   76 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------
Confidence            4567788999999999999999999999999988    4678899999999999999999999887642110        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hH
Q psy16214        114 ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN------PD  187 (470)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~  187 (470)
                                                      ...|....++..+|.++...|++++|+..+++++...|..      ..
T Consensus        77 --------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  124 (338)
T 3ro2_A           77 --------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR  124 (338)
T ss_dssp             --------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             --------------------------------cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence                                            0011223567778999999999999999999998876544      34


Q ss_pred             HHHHHHHHHhccCC--------------------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214        188 AVFVRGLCLYYDDK--------------------MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGK  247 (470)
Q Consensus       188 ~~~~la~~~~~~g~--------------------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (470)
                      ++..+|.++...|+                    +++|+..+++++...+......      .....+...|.++...|+
T Consensus       125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~  198 (338)
T 3ro2_A          125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA------AQGRAFGNLGNTHYLLGN  198 (338)
T ss_dssp             HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHH------HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHHHHHhCC
Confidence            89999999999999                    9999999999887532211100      011122334999999999


Q ss_pred             HHHHHHHHHHHHhhcccCc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCC
Q psy16214        248 NQEAFDIYTEALKIDARNI--NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSRRCKCFHALGQ  319 (470)
Q Consensus       248 ~~~A~~~~~~al~~~p~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~  319 (470)
                      +++|+.++++++...+...  .....++..+|.++...|++++|+.++++++.+.|..      ..++..+|.++...|+
T Consensus       199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  278 (338)
T 3ro2_A          199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD  278 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC
Confidence            9999999999998866532  2235689999999999999999999999999986655      7889999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy16214        320 YKECVIDAEKIYKMDNS  336 (470)
Q Consensus       320 ~~~A~~~~~~a~~~~p~  336 (470)
                      +++|+.++++++++.|.
T Consensus       279 ~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          279 YEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=185.65  Aligned_cols=253  Identities=14%  Similarity=0.080  Sum_probs=193.9

Q ss_pred             cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy16214         33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD  104 (470)
Q Consensus        33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  104 (470)
                      .+|..+.++..+|.++...|++++|+..+++++++        .|....++..+|.++...|++++|+.++++++.+.. 
T Consensus        22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-  100 (311)
T 3nf1_A           22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE-  100 (311)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-
Confidence            35677899999999999999999999999999995        666788999999999999999999999999876421 


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC-
Q psy16214        105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM-DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD-  182 (470)
Q Consensus       105 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-  182 (470)
                                                            +.. ...|....++..+|.++...|++++|+..+++++... 
T Consensus       101 --------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  142 (311)
T 3nf1_A          101 --------------------------------------KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE  142 (311)
T ss_dssp             --------------------------------------HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             --------------------------------------HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence                                                  000 0112234567778999999999999999999998774 


Q ss_pred             -------CCChHHHHHHHHHHhccCChHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214        183 -------KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKL--------APDHAKAKETYKRAKLLKAKKEEGNEKFVAGK  247 (470)
Q Consensus       183 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (470)
                             |....++..+|.++...|++++|+.++++++..        .|....++..+            |.++...|+
T Consensus       143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~  210 (311)
T 3nf1_A          143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL------------ASCYLKQGK  210 (311)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH------------HHHHHHHTC
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHHHHcCC
Confidence                   555678999999999999999999999999987        55555556555            999999999


Q ss_pred             HHHHHHHHHHHHhhcccC---------cc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214        248 NQEAFDIYTEALKIDARN---------IN--INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA  316 (470)
Q Consensus       248 ~~~A~~~~~~al~~~p~~---------~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  316 (470)
                      +++|+.++++++...|..         ..  .....+..++..+...+.+.+|+..+.+++...|..+.++..+|.++..
T Consensus       211 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~  290 (311)
T 3nf1_A          211 FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRR  290 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHH
Confidence            999999999999865431         11  1233444555566667778888889999999999999999999999999


Q ss_pred             hCCHHHHHHHHHHHHhcCCC
Q psy16214        317 LGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       317 ~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +|++++|+.+|++++++.|.
T Consensus       291 ~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          291 QGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HTCHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHhhc
Confidence            99999999999999998773

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.89  E-value=1.4e-21  Score=174.19  Aligned_cols=219  Identities=11%  Similarity=0.017  Sum_probs=148.8

Q ss_pred             hhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH
Q psy16214         31 ISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA  107 (470)
Q Consensus        31 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  107 (470)
                      ...+|.++..++.+|.+++..|++++|+..|+++++.+|++   +.+++.+|.++..+|++++|+..|+++++..|+++.
T Consensus         8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A            8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            45678889999999999999999999999999999999988   889999999999999999999999999998887643


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHh
Q psy16214        108 IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH--------LNRLQEAQEIANSIL  179 (470)
Q Consensus       108 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~l  179 (470)
                      .                                           +.+++.+|.++..        .|++++|+..|++++
T Consensus        88 ~-------------------------------------------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l  124 (261)
T 3qky_A           88 V-------------------------------------------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI  124 (261)
T ss_dssp             H-------------------------------------------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred             h-------------------------------------------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            2                                           2345667777777        677777777777777


Q ss_pred             hcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214        180 ATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL  259 (470)
Q Consensus       180 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  259 (470)
                      ..+|+++.+...+..+....+..                 ...+..            .|.++...|++++|+..|++++
T Consensus       125 ~~~p~~~~~~~a~~~~~~~~~~~-----------------~~~~~~------------la~~~~~~g~~~~A~~~~~~~l  175 (261)
T 3qky_A          125 DRYPNHELVDDATQKIRELRAKL-----------------ARKQYE------------AARLYERRELYEAAAVTYEAVF  175 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHH-----------------HHHHHH------------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHCcCchhHHHHHHHHHHHHHHH-----------------HHHHHH------------HHHHHHHccCHHHHHHHHHHHH
Confidence            77776655443332221111100                 011222            2667777777777777777777


Q ss_pred             hhcccCccchHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHH
Q psy16214        260 KIDARNININSKLLHNRATVLFKM----------GKYNEAIADCTLALEKDPNYL---KALSRRCKCFHALGQYKE  322 (470)
Q Consensus       260 ~~~p~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~  322 (470)
                      ...|+++. ...+++.+|.++..+          |++++|+..|+++++..|+++   .+...++.++..++++++
T Consensus       176 ~~~p~~~~-~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          176 DAYPDTPW-ADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHCTTSTT-HHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCCch-HHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence            76666443 245666777777655          666777777777777777663   444455555555555443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.89  E-value=1.4e-20  Score=168.89  Aligned_cols=238  Identities=11%  Similarity=0.020  Sum_probs=172.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy16214         55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALG--DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN  132 (470)
Q Consensus        55 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  132 (470)
                      ++|+..+.++|.++|++..+|..++.++..++  ++++++..+..++..+|++..+|...+.+.......     .-..+
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-----l~~~~  124 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-----NNNDF  124 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-----TTTCC
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-----ccccC
Confidence            45666666666666666666666666666666  666666666666666666666666666554221100     00024


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHhhcCCCChHHHHHHHHHHhccCC------hHH
Q psy16214        133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ--EAQEIANSILATDKQNPDAVFVRGLCLYYDDK------MDL  204 (470)
Q Consensus       133 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------~~~  204 (470)
                      ++++++..++++++.+|.+..+|..++.++...+.++  +++..+.+++..+|.+..+|..++.++...+.      +++
T Consensus       125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence            5667777777777777777777788888888888877  88888888888888888888888888888776      888


Q ss_pred             HHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhc---ccCccchHHHHHHHHHHH
Q psy16214        205 AVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE-AFDIYTEALKID---ARNININSKLLHNRATVL  280 (470)
Q Consensus       205 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~~~~~la~~~  280 (470)
                      ++.++.+++..+|++..+|..+            +.++...|+..+ ....+.+++...   |.    .+.++..++.++
T Consensus       205 El~~~~~aI~~~p~n~SaW~y~------------~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----s~~al~~la~~~  268 (306)
T 3dra_A          205 ELNYVKDKIVKCPQNPSTWNYL------------LGIHERFDRSITQLEEFSLQFVDLEKDQVT----SSFALETLAKIY  268 (306)
T ss_dssp             HHHHHHHHHHHCSSCHHHHHHH------------HHHHHHTTCCGGGGHHHHHTTEEGGGTEES----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCccHHHHH------------HHHHHhcCCChHHHHHHHHHHHhccCCCCC----CHHHHHHHHHHH
Confidence            8888888888888888888887            777777777544 455777777665   44    456788888888


Q ss_pred             HHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q psy16214        281 FKMGKYNEAIADCTLALE-KDPNYLKALSRRCKC  313 (470)
Q Consensus       281 ~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~  313 (470)
                      .+.|+.++|+++|+.+.+ .+|-....|..++..
T Consensus       269 ~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          269 TQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             HccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence            888899999999998886 788888888877654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.88  E-value=2.3e-20  Score=167.40  Aligned_cols=241  Identities=12%  Similarity=-0.070  Sum_probs=173.3

Q ss_pred             HHHHHHHHhcCCH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcCCCCHHHHHHHHHHH--
Q psy16214          8 KEDGNTQYKLKQY-SKALKCYSEAISVCPNVAAYYGNRAACYMMLG--MYTYALDDAKLAVSLDPRFSKGLIRQIKCN--   82 (470)
Q Consensus         8 ~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~--   82 (470)
                      +..-......|.+ ++|+.++.++|.++|++..+|+.++.++..++  ++++++..+..++..+|++..+|..++.++  
T Consensus        36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~  115 (306)
T 3dra_A           36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ  115 (306)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence            3334444566666 58888888888888888888888888888888  888888888888888888888888888887  


Q ss_pred             --HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-----HHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHH
Q psy16214         83 --IALGDAPTARSNLKALQELDPDNPAIAQESKALETM-----AKNFEGASKAFEANDYR--TAMFYLDRAMDQGVASKT  153 (470)
Q Consensus        83 --~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~--~A~~~~~~~l~~~p~~~~  153 (470)
                        ..++.              .+........+..+...     .............+.++  +++..++++++.+|.+..
T Consensus       116 ~~~~l~~--------------~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s  181 (306)
T 3dra_A          116 IMELNNN--------------DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS  181 (306)
T ss_dssp             HHHHTTT--------------CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHhccc--------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence              33321              01111222222222111     11122223334456676  888888888888888888


Q ss_pred             HHHHHHHHHHHcCC------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHH-HHHHHHHHhhC---CChHHHH
Q psy16214        154 YKLMKAECLAHLNR------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA-VNHFQLLLKLA---PDHAKAK  223 (470)
Q Consensus       154 ~~~~~a~~~~~~~~------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~~~---p~~~~~~  223 (470)
                      +|..++.++...+.      ++++++++.+++..+|++..+|+.++.++...|+...+ ...+.+++.++   |.++.++
T Consensus       182 AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al  261 (306)
T 3dra_A          182 AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL  261 (306)
T ss_dssp             HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred             HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence            88888888888877      88888888888888888888888888888888886554 44666666665   7777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcccCccchHHHHHHHHH
Q psy16214        224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK-IDARNININSKLLHNRAT  278 (470)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~la~  278 (470)
                      ..+            +.++.+.|+.++|+++|+.+.. .+|-    ....|..++.
T Consensus       262 ~~l------------a~~~~~~~~~~~A~~~~~~l~~~~Dpi----r~~yW~~~~~  301 (306)
T 3dra_A          262 ETL------------AKIYTQQKKYNESRTVYDLLKSKYNPI----RSNFWDYQIS  301 (306)
T ss_dssp             HHH------------HHHHHHTTCHHHHHHHHHHHHHTTCGG----GHHHHHHHHH
T ss_pred             HHH------------HHHHHccCCHHHHHHHHHHHHhccChH----HHHHHHHHHh
Confidence            777            8888888888888888888886 6887    4455666554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.88  E-value=2.5e-22  Score=183.67  Aligned_cols=241  Identities=16%  Similarity=0.105  Sum_probs=189.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-------
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-------   67 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-------   67 (470)
                      .+..+..+|..++..|++++|+.+|++++..        .|..+.++..+|.++...|++++|+..+++++.+       
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999994        6777899999999999999999999999999987       


Q ss_pred             -CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-----CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q psy16214         68 -DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELD-----PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYL  141 (470)
Q Consensus        68 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  141 (470)
                       .|....++..+|.++...|++++|+.++++++++.     ++++....         .....+..+...|++++|+.++
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~la~~~~~~~~~~~A~~~~  176 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAK---------QLNNLALLCQNQGKYEEVEYYY  176 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH---------HHHHHHHHHHTTTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHH---------HHHHHHHHHHHcCCHHHHHHHH
Confidence             35567899999999999999999999999999874     33332211         1233455578889999999999


Q ss_pred             HHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC---------CCChHHHHH------HHHHHhc
Q psy16214        142 DRAMDQ--------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATD---------KQNPDAVFV------RGLCLYY  198 (470)
Q Consensus       142 ~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------p~~~~~~~~------la~~~~~  198 (470)
                      ++++..        .|....++..+|.++...|++++|+..+++++...         +.....+..      .+..+..
T Consensus       177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence            999988        66677889999999999999999999999999753         333333333      3444455


Q ss_pred             cCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q psy16214        199 DDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       199 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  264 (470)
                      .+.+.+|+..+.++....|....++..+            |.++...|++++|+.+|++++++.|.
T Consensus       257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          257 GTSFGEYGGWYKACKVDSPTVTTTLKNL------------GALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCSCCCC---------CHHHHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhcCCCCchHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            6777888889999999888888888887            99999999999999999999998775

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.88  E-value=2.6e-20  Score=175.17  Aligned_cols=201  Identities=16%  Similarity=0.054  Sum_probs=152.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-----hHHHHHHHH
Q psy16214        128 AFEANDYRTAMFYLDRAMDQG--------VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN-----PDAVFVRGL  194 (470)
Q Consensus       128 ~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~  194 (470)
                      +...|++++|+..+++++...        |....++..+|.++...|++++|...+++++...+..     ..++..+|.
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  182 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  182 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence            344444444444444444432        2334567789999999999999999999999887753     357889999


Q ss_pred             HHhccCChHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHH
Q psy16214        195 CLYYDDKMDLAVNHFQLLLKLAPD--HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKL  272 (470)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~  272 (470)
                      ++...|++++|+..+++++.+.+.  .+..+...       .....+.++...|++++|...+++++...|.+.......
T Consensus       183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  255 (373)
T 1hz4_A          183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-------ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  255 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-------HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-------HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence            999999999999999999886432  21111110       001125668899999999999999998776543333456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        273 LHNRATVLFKMGKYNEAIADCTLALEKDPN------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       273 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      +..++.++...|++++|+..+++++...+.      ...++..+|.++...|++++|...+++++.+.+
T Consensus       256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence            788999999999999999999999887432      235888899999999999999999999998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.87  E-value=2e-21  Score=176.04  Aligned_cols=262  Identities=13%  Similarity=0.077  Sum_probs=180.7

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHc---CChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214         22 KALKCYSEAISVCPNVAAYYGNRAACYMML---GMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL   98 (470)
Q Consensus        22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~   98 (470)
                      +|.+++.++-+.-+.....+     .++..   +++++|+..|+++              |.+|..+|++++|+.+|.++
T Consensus         3 ~a~~~~~~a~k~~~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~a   63 (292)
T 1qqe_A            3 DPVELLKRAEKKGVPSSGFM-----KLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKA   63 (292)
T ss_dssp             CHHHHHHHHHHHSSCCCTHH-----HHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhCcCCCcc-----hhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHH
Confidence            45566666666555432222     11222   2477777777776              55677788888888888877


Q ss_pred             HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214         99 QELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI  178 (470)
Q Consensus        99 l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  178 (470)
                      +.+.+...                          +..              ....++..+|.++...|++++|+.+++++
T Consensus        64 l~~~~~~~--------------------------~~~--------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~A  103 (292)
T 1qqe_A           64 ADYQKKAG--------------------------NED--------------EAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (292)
T ss_dssp             HHHHHHTT--------------------------CHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhC--------------------------CHH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            76432211                          100              11235667888888888888888888888


Q ss_pred             hhcCCCC------hHHHHHHHHHHhcc-CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16214        179 LATDKQN------PDAVFVRGLCLYYD-DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA  251 (470)
Q Consensus       179 l~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  251 (470)
                      +.+.|..      ..++..+|.++... |++++|+.+|++++.+.|.......      ....+...|.++...|++++|
T Consensus       104 l~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~------~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A          104 IQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL------SNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH------HHHHHHHHHHHHHHhCCHHHH
Confidence            8776643      45788999999996 9999999999999998875421100      001122339999999999999


Q ss_pred             HHHHHHHHhhcccCccc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHH--HhCCHH
Q psy16214        252 FDIYTEALKIDARNINI---NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA-----LSRRCKCFH--ALGQYK  321 (470)
Q Consensus       252 ~~~~~~al~~~p~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~--~~g~~~  321 (470)
                      +.+|++++.+.|++...   ...++.++|.++..+|++++|+..|+++++++|+...+     +..++.++.  ..++++
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~  257 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS  257 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999886542   23478999999999999999999999999999987553     455666664  567899


Q ss_pred             HHHHHHHHHHhcCCChhHHHHHHHHHHHh
Q psy16214        322 ECVIDAEKIYKMDNSRENHNFLEEAKRLL  350 (470)
Q Consensus       322 ~A~~~~~~a~~~~p~~~~~~~l~~~~~~~  350 (470)
                      +|+..|++++.++|.  ....+.+++..+
T Consensus       258 ~A~~~~~~~~~l~~~--~~~~~~~~k~~~  284 (292)
T 1qqe_A          258 EHCKEFDNFMRLDKW--KITILNKIKESI  284 (292)
T ss_dssp             HHHHHHTTSSCCCHH--HHHHHHHHHHHH
T ss_pred             HHHHHhccCCccHHH--HHHHHHHHHHHh
Confidence            999999999999874  233444444443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.87  E-value=1.6e-19  Score=169.87  Aligned_cols=307  Identities=13%  Similarity=0.004  Sum_probs=236.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------H
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA-----AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------S   72 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~   72 (470)
                      ++.+..+|..++..|++++|+..+++++...|...     .++..+|.++...|++++|+..+++++.+.|..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45678889999999999999999999999877542     367899999999999999999999999875543      2


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy16214         73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDN-----PAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ  147 (470)
Q Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~  147 (470)
                      .++..+|.++...|++++|+..+++++.+.+..     +...    .+     ....+..++..|++++|+..+++++..
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~----~~-----~~~la~~~~~~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE----FL-----VRIRAQLLWAWARLDEAEASARSGIEV  164 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH----HH-----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH----HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            347889999999999999999999999865321     1111    00     123344578889999999999999998


Q ss_pred             CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--ChHHHH-----HHHHHHhccCChHHHHHHHHHHHhh
Q psy16214        148 GVA-----SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ--NPDAVF-----VRGLCLYYDDKMDLAVNHFQLLLKL  215 (470)
Q Consensus       148 ~p~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~-----~la~~~~~~g~~~~A~~~~~~~l~~  215 (470)
                      .+.     ....+..+|.++...|++++|...+++++...+.  .+..+.     .++.++...|++++|...+++++..
T Consensus       165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  244 (373)
T 1hz4_A          165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP  244 (373)
T ss_dssp             TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence            765     2457888999999999999999999999876332  222222     3445578999999999999999987


Q ss_pred             CCChHH----HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc--cchHHHHHHHHHHHHHcCCHHHH
Q psy16214        216 APDHAK----AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI--NINSKLLHNRATVLFKMGKYNEA  289 (470)
Q Consensus       216 ~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~la~~~~~~g~~~~A  289 (470)
                      .|....    .+..            .+.++...|++++|+..+++++...+...  .....++..+|.++...|++++|
T Consensus       245 ~~~~~~~~~~~~~~------------la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  312 (373)
T 1hz4_A          245 EFANNHFLQGQWRN------------IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA  312 (373)
T ss_dssp             CCTTCGGGHHHHHH------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcchhhHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence            765321    2222            38999999999999999999998765422  11235788999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChh
Q psy16214        290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRE  338 (470)
Q Consensus       290 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~  338 (470)
                      ...+++++.+.+..     .....+...|  +.....+++++...|..+
T Consensus       313 ~~~l~~al~~~~~~-----g~~~~~~~~g--~~~~~ll~~~~~~~~~~~  354 (373)
T 1hz4_A          313 QRVLLDALKLANRT-----GFISHFVIEG--EAMAQQLRQLIQLNTLPE  354 (373)
T ss_dssp             HHHHHHHHHHHHHH-----CCCHHHHTTH--HHHHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHhccc-----cHHHHHHHcc--HHHHHHHHHHHhCCCCch
Confidence            99999999875421     1112333333  677888899999888633

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.87  E-value=7.5e-21  Score=179.21  Aligned_cols=237  Identities=15%  Similarity=0.033  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------chhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-------CH
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCP------NVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-------FS   72 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------~~   72 (470)
                      .++.+|..++..|+|++|+.+|++++...+      ..+.+++.+|.++..+|++++|+..+++++++.+.       .+
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            456677777777777777777777776522      24567777777777777777777777777775332       24


Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214         73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK  152 (470)
Q Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  152 (470)
                      .++..+|.++..+|++++|+..+++++++.+.....                                        +...
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------------------~~~~  222 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND----------------------------------------RFIA  222 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----------------------------------------HHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH----------------------------------------HHHH
Confidence            466677777777777777777777776643211100                                        0113


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhh-----cCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCC-----hHHH
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILA-----TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD-----HAKA  222 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~  222 (470)
                      .++.++|.++...|++++|+.++++++.     .+|..+.++..+|.++...|++++|+.++++++.+.+.     ....
T Consensus       223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  302 (378)
T 3q15_A          223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL  302 (378)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4677899999999999999999999998     77878889999999999999999999999999997543     2222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        223 KETYKRAKLLKAKKEEGNEKFVAGK---NQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      ...+            +.++...++   +.+|+..+++. ...|.    ...++..+|.++...|++++|+.+++++++.
T Consensus       303 ~~~l------------~~ly~~~~~~~~~~~al~~~~~~-~~~~~----~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          303 FLFL------------QAVYKETVDERKIHDLLSYFEKK-NLHAY----IEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHH------------HHHHSSSCCHHHHHHHHHHHHHT-TCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHH------------HHHHhCCCcHHHHHHHHHHHHhC-CChhH----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            2222            677777777   77777777762 12222    3456777888888888888888888887765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.87  E-value=1.4e-20  Score=161.42  Aligned_cols=172  Identities=12%  Similarity=0.041  Sum_probs=135.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHH----------------HHHHHHHcCChHHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGN----------------RAACYMMLGMYTYALDDAKLAV   65 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------~a~~~~~~g~~~~A~~~~~~al   65 (470)
                      .+++.++..|..++..|+|++|+..|++++..+|+++.+++.                +|.++...|++++|+..|++++
T Consensus         2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   81 (208)
T 3urz_A            2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL   81 (208)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999                9999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214         66 SLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM  145 (470)
Q Consensus        66 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  145 (470)
                      +++|+++.+++.+|.++..+|++++|+.+|+++++++|+++.++..++.++...+...          ...+...+.+++
T Consensus        82 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~----------~~~~~~~~~~~~  151 (208)
T 3urz_A           82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE----------KKKLETDYKKLS  151 (208)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH----------HHHHHHHHC---
T ss_pred             HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH----------HHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999888887754443221          122333344433


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214        146 DQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ  184 (470)
Q Consensus       146 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  184 (470)
                      ...|. ...++.+|.++...|++++|+..|+++++++|+
T Consensus       152 ~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          152 SPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             CCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            22211 123444555566666666666666666666664

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.87  E-value=7e-21  Score=163.33  Aligned_cols=179  Identities=15%  Similarity=0.124  Sum_probs=145.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHH----------------HHHHHhccCChHHHHHHHHHHHh
Q psy16214        151 SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFV----------------RGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       151 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                      ++..++..|..+...|++++|+..|++++..+|+++.+++.                +|.++...|++++|+..|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34556667777888888888888888888888887777777                99999999999999999999999


Q ss_pred             hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC--HHHHHHH
Q psy16214        215 LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK--YNEAIAD  292 (470)
Q Consensus       215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~--~~~A~~~  292 (470)
                      ++|++..++..+            |.++...|++++|+..|+++++++|+    ++.++.++|.++...|+  ...+...
T Consensus        83 ~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~~~~~~~~~~~~  146 (208)
T 3urz_A           83 KAPNNVDCLEAC------------AEMQVCRGQEKDALRMYEKILQLEAD----NLAANIFLGNYYYLTAEQEKKKLETD  146 (208)
T ss_dssp             HCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999988888            99999999999999999999999999    45679999999877764  4556777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy16214        293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA  346 (470)
Q Consensus       293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~  346 (470)
                      +.+++...|. ..+++.+|.++..+|++++|+.+|+++++++|+.+....+.++
T Consensus       147 ~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~i  199 (208)
T 3urz_A          147 YKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKI  199 (208)
T ss_dssp             HC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred             HHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            7777643332 3477889999999999999999999999999987666655554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.87  E-value=4.5e-20  Score=160.46  Aligned_cols=190  Identities=12%  Similarity=0.044  Sum_probs=160.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHH---HH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSK---GL   75 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~   75 (470)
                      .+++.++.+|..++..|+|++|+..|++++...|.+   ..+++.+|.+++..|++++|+..|+++++.+|+++.   ++
T Consensus         2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            367899999999999999999999999999998876   478999999999999999999999999999999864   89


Q ss_pred             HHHHHHHHH------------------cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16214         76 IRQIKCNIA------------------LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTA  137 (470)
Q Consensus        76 ~~la~~~~~------------------~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  137 (470)
                      +.+|.++..                  .|++++|+..|+++++..|+++.++..+..+.......               
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~---------------  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRL---------------  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH---------------
Confidence            999999886                  57899999999999999999987765443332221111               


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh---HHHHHHHHHHhccCChHHHHHHHHHHHh
Q psy16214        138 MFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP---DAVFVRGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       138 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                                    ......+|.++...|++++|+..|+++++..|+++   ++++.+|.++..+|++++|+..++++..
T Consensus       147 --------------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          147 --------------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             --------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence                          11235678889999999999999999999998876   6789999999999999999999998888


Q ss_pred             hCCChH
Q psy16214        215 LAPDHA  220 (470)
Q Consensus       215 ~~p~~~  220 (470)
                      ..|++.
T Consensus       213 ~~~~~~  218 (225)
T 2yhc_A          213 NSSNTL  218 (225)
T ss_dssp             CCSCCC
T ss_pred             hCCCch
Confidence            888764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.87  E-value=1.3e-20  Score=170.77  Aligned_cols=219  Identities=16%  Similarity=0.139  Sum_probs=167.9

Q ss_pred             CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCChHHHH
Q psy16214         19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR------FSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      ++++|+.+|+++              |.+|...|++++|+..|++++++.+.      .+.++..+|.+|..+|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            488888888887              66788999999999999999998532      2678999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc
Q psy16214         93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVAS------KTYKLMKAECLAHL  165 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~  165 (470)
                      .+|++++++.|....... .+..     ....+..+... |++++|+.++++++.+.|..      ..++..+|.++...
T Consensus        98 ~~~~~Al~l~~~~g~~~~-~a~~-----~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~  171 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRR-GANF-----KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD  171 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHH-HHHH-----HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHH-HHHH-----HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence            999999998765432110 0111     12344456775 99999999999999998754      46788999999999


Q ss_pred             CCHHHHHHHHHHHhhcCCCChH-------HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHH
Q psy16214        166 NRLQEAQEIANSILATDKQNPD-------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEE  238 (470)
Q Consensus       166 ~~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~  238 (470)
                      |++++|+..|++++...|.+..       ++..+|.++..+|++++|+.+|++++.++|+........       .....
T Consensus       172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~-------~l~~l  244 (292)
T 1qqe_A          172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESN-------FLKSL  244 (292)
T ss_dssp             TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HH-------HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH-------HHHHH
Confidence            9999999999999999987654       578999999999999999999999999999876543221       00111


Q ss_pred             HHHHH--hcCCHHHHHHHHHHHHhhccc
Q psy16214        239 GNEKF--VAGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       239 ~~~~~--~~~~~~~A~~~~~~al~~~p~  264 (470)
                      +..+.  ..+++++|+..|++++.++|.
T Consensus       245 ~~~~~~~~~~~~~~A~~~~~~~~~l~~~  272 (292)
T 1qqe_A          245 IDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (292)
T ss_dssp             HHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence            33332  457799999999888888887

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=3.6e-20  Score=187.27  Aligned_cols=188  Identities=12%  Similarity=0.007  Sum_probs=171.8

Q ss_pred             hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--------hcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16214         66 SLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ--------ELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTA  137 (470)
Q Consensus        66 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A  137 (470)
                      .++|+++.+++..+   ...|++++|++.+++++        +.+|++..++..++.+            ++..|++++|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~------------~~~~g~~~~A  452 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRA------------LLDLGDVAKA  452 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHH------------HHHHTCHHHH
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHH------------HHhcCCHHHH
Confidence            35788888888777   78999999999999999        8999999988666555            7778999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC
Q psy16214        138 MFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP  217 (470)
Q Consensus       138 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  217 (470)
                      +..++++++.+|++..++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++ +..|+++++++|
T Consensus       453 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P  531 (681)
T 2pzi_A          453 TRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTND  531 (681)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred             HHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC
Q psy16214        218 DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK  285 (470)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~  285 (470)
                      ++..++..+            |.++...|++++|+..|+++++++|+    ...++.++|.++...++
T Consensus       532 ~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~P~----~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          532 GVISAAFGL------------ARARSAEGDRVGAVRTLDEVPPTSRH----FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             TCHHHHHHH------------HHHHHHTTCHHHHHHHHHTSCTTSTT----HHHHHHHHHHHTC----
T ss_pred             chHHHHHHH------------HHHHHHcCCHHHHHHHHHhhcccCcc----cHHHHHHHHHHHHccCC
Confidence            999999888            99999999999999999999999999    67789999999987666

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.85  E-value=1.6e-19  Score=170.09  Aligned_cols=308  Identities=12%  Similarity=0.020  Sum_probs=224.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCC---chhH--HHHHHHHH--HHHcCChHHHH---------HHHHHHHhcCCC
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVCP---NVAA--YYGNRAAC--YMMLGMYTYAL---------DDAKLAVSLDPR   70 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~--~~~~~a~~--~~~~g~~~~A~---------~~~~~al~~~p~   70 (470)
                      ..+.=..+...+++++|..+++++...-+   .+..  .++.+-..  ....+.+..+.         ..++++-.....
T Consensus        15 ~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~   94 (378)
T 3q15_A           15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKK   94 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHH
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCC
Confidence            33333445889999999999998755322   1222  23332221  22223333333         444443221111


Q ss_pred             -----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214         71 -----FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM  145 (470)
Q Consensus        71 -----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  145 (470)
                           ....++.+|..+...|++++|+..|++++++.+..... ...+.+     ....|..+...|+++.|+.++.+++
T Consensus        95 ~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~-----~~~lg~~y~~~~~~~~A~~~~~~al  168 (378)
T 3q15_A           95 LTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDD-IEKAEF-----HFKVAEAYYHMKQTHVSMYHILQAL  168 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH-HHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh-HHHHHH-----HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence                 12256788999999999999999999999875432211 111112     2445566888999999999999999


Q ss_pred             HhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214        146 DQGVA-------SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ------NPDAVFVRGLCLYYDDKMDLAVNHFQLL  212 (470)
Q Consensus       146 ~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~  212 (470)
                      ...+.       ...++..+|.++...|++++|+..+++++...+.      ...++.++|.++...|++++|+.+++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  248 (378)
T 3q15_A          169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA  248 (378)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            87543       2456788999999999999999999999986432      2457899999999999999999999999


Q ss_pred             Hh-----hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCC
Q psy16214        213 LK-----LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGK  285 (470)
Q Consensus       213 l~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~  285 (470)
                      +.     .+|....++..+            |.++...|++++|+.++++++.+.+.  ++. ....+..++.++...++
T Consensus       249 l~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l~~ly~~~~~  315 (378)
T 3q15_A          249 AKVSREKVPDLLPKVLFGL------------SWTLCKAGQTQKAFQFIEEGLDHITARSHKF-YKELFLFLQAVYKETVD  315 (378)
T ss_dssp             HHHHHHHCGGGHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC-HHHHHHHHHHHHSSSCC
T ss_pred             HHHHHhhCChhHHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHhCCCc
Confidence            99     667666666666            99999999999999999999988654  222 23456778888888898


Q ss_pred             ---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        286 ---YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       286 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                         +.+|+..+++ ....|....++..+|.+|...|++++|..+|++++++.
T Consensus       316 ~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          316 ERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence               8888888877 22334556788899999999999999999999999764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.85  E-value=6.6e-20  Score=153.85  Aligned_cols=170  Identities=19%  Similarity=0.226  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHH
Q psy16214        152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKL  231 (470)
Q Consensus       152 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~  231 (470)
                      ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++..++..+     
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-----   82 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL-----   82 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH-----
Confidence            456788999999999999999999999999999999999999999999999999999999999999999888877     


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214        232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC  311 (470)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  311 (470)
                             |.++...|++++|+..+++++...|.+    ..++..+|.++...|++++|+..+++++...|.++.++..+|
T Consensus        83 -------a~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  151 (186)
T 3as5_A           83 -------GLTYVQVQKYDLAVPLLIKVAEANPIN----FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA  151 (186)
T ss_dssp             -------HHHHHHHTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             -------HHHHHHhcCHHHHHHHHHHHHhcCcHh----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence                   999999999999999999999999984    567999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214        312 KCFHALGQYKECVIDAEKIYKMDNSR  337 (470)
Q Consensus       312 ~~~~~~g~~~~A~~~~~~a~~~~p~~  337 (470)
                      .++...|++++|+..+++++++.|+.
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (186)
T 3as5_A          152 FSYEQMGRHEEALPHFKKANELDEGA  177 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999998863

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.85  E-value=9.1e-20  Score=152.97  Aligned_cols=171  Identities=14%  Similarity=0.065  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            45566677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA  163 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  163 (470)
                      ..|++++|+..+++++...|.++                                              .++..+|.++.
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~----------------------------------------------~~~~~~a~~~~  121 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINF----------------------------------------------NVRFRLGVALD  121 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCH----------------------------------------------HHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhH----------------------------------------------HHHHHHHHHHH
Confidence            77777777766666666655544                                              44455666666


Q ss_pred             HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChH
Q psy16214        164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA  220 (470)
Q Consensus       164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  220 (470)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|++.
T Consensus       122 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  178 (186)
T 3as5_A          122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS  178 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred             HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence            666666666666666666666666666666666666666666666666666666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.85  E-value=5e-21  Score=154.85  Aligned_cols=145  Identities=12%  Similarity=-0.018  Sum_probs=109.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChH
Q psy16214         10 DGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP   89 (470)
Q Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~   89 (470)
                      +|..+...|++++|+..+++++..+|+++..++.+|.+|+..|++++|+..|+++++++|+++.+|..+|.++..+|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            67888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy16214         90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFY-LDRAMDQGVASKTYKLMKAECLAHLN  166 (470)
Q Consensus        90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~-~~~~l~~~p~~~~~~~~~a~~~~~~~  166 (470)
                      +|+..|+++++++|+++.++..++.+            +...+++++|... ++++++++|+++.++..++.++...|
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAEL------------LCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHH------------HHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            99999999999888877765444443            3333444333322 34444444444444444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.85  E-value=3.6e-18  Score=153.87  Aligned_cols=195  Identities=14%  Similarity=0.119  Sum_probs=159.4

Q ss_pred             HHHhcCCHH-HHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214         13 TQYKLKQYS-KALKCYSEAISVCPNVAAYYGNRAACYMMLGM----------YTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus        13 ~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .....|+++ +|+.++..++..+|++..+|+.++.++..++.          +++++..+..++..+|.+..+|...+.+
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl  117 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  117 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344677776 79999999999999999999999999988776          6899999999999999999999999999


Q ss_pred             HHHcCC--hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214         82 NIALGD--APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAND-YRTAMFYLDRAMDQGVASKTYKLMK  158 (470)
Q Consensus        82 ~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~~  158 (470)
                      +..+++  +++++.++.++++.+|.|..+|...+.+..            ..+. +++++.++++++..+|.+..+|..+
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~------------~l~~~~~eel~~~~~~I~~~p~N~SAW~~R  185 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA------------QAAVAPAEELAFTDSLITRNFSNYSSWHYR  185 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------------HTTCCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------HhCcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            999984  899999999999999999999987777633            2344 5888999999999999999999999


Q ss_pred             HHHHHHc--------------CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-C----------ChHHHHHHHHHHH
Q psy16214        159 AECLAHL--------------NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-D----------KMDLAVNHFQLLL  213 (470)
Q Consensus       159 a~~~~~~--------------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g----------~~~~A~~~~~~~l  213 (470)
                      +.++...              +.++++++++.+++..+|++..+|+.+..++... |          .++++++.+.+++
T Consensus       186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell  265 (331)
T 3dss_A          186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ  265 (331)
T ss_dssp             HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence            9888877              5588899999999999999999987554444433 3          3455556666666


Q ss_pred             hhCCCh
Q psy16214        214 KLAPDH  219 (470)
Q Consensus       214 ~~~p~~  219 (470)
                      +..|++
T Consensus       266 e~~pd~  271 (331)
T 3dss_A          266 ELEPEN  271 (331)
T ss_dssp             HHCTTC
T ss_pred             hhCccc
Confidence            666655

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.84  E-value=7.8e-21  Score=153.72  Aligned_cols=146  Identities=12%  Similarity=0.088  Sum_probs=111.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE  237 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  237 (470)
                      +|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+.+|+++++++|+++.++..+           
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~l-----------   71 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFL-----------   71 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----------
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----------
Confidence            566677777788888888888887777777788888888888888888888888888888888777777           


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIAD-CTLALEKDPNYLKALSRRCKCFHA  316 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~  316 (470)
                       |.++...|++++|+..|+++++++|+    .+.++.++|.++..+|++++|... ++++++++|+++.++..++.++..
T Consensus        72 -g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           72 -GLLYELEENTDKAVECYRRSVELNPT----QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             -HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             -HHHHHHcCchHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence             88888888888888888888888887    345678888888888887766554 577888888888888877877777


Q ss_pred             hCC
Q psy16214        317 LGQ  319 (470)
Q Consensus       317 ~g~  319 (470)
                      .|+
T Consensus       147 ~G~  149 (150)
T 4ga2_A          147 EGE  149 (150)
T ss_dssp             CCC
T ss_pred             hCc
Confidence            664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.83  E-value=1.7e-19  Score=140.98  Aligned_cols=113  Identities=32%  Similarity=0.537  Sum_probs=109.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.+.++|+.++..|+|++|+..|+++++.+|.++.++.++|.++..+|++++|+..|+++++++|+++.+++.+|.++
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      ..+|++++|+..|+++++++|++..++..++.+
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            999999999999999999999999998777665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=1.8e-17  Score=170.11  Aligned_cols=308  Identities=13%  Similarity=0.078  Sum_probs=229.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214          9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA   88 (470)
Q Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   88 (470)
                      ..|..+...|.|++|..+|+++-  .  ...   .+...+...+++++|++.++++     +.+.+|+.+|.++...|++
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~--~--~~~---A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFD--V--NTS---AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcC--C--HHH---HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCH
Confidence            35999999999999999999973  1  111   1233344889999999999866     5689999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL  168 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~  168 (470)
                      ++|+..|.++     +++..+..++.            .+.+.|++++|+.+|..+.+..+.. .+...+|.+|.+++++
T Consensus      1122 kEAIdsYiKA-----dD~say~eVa~------------~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A         1122 KEAIDSYIKA-----DDPSSYMEVVQ------------AANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRL 1183 (1630)
T ss_pred             HHHHHHHHhc-----CChHHHHHHHH------------HHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCH
Confidence            9999999886     66777655444            4777899999999999999887442 2333589999999998


Q ss_pred             HHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214        169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN  248 (470)
Q Consensus       169 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (470)
                      ++ ++.|.    ..+ +...+..+|..+...|++++|+.+|.++        ..|..+            +.++.+.|++
T Consensus      1184 ee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rL------------A~tLvkLge~ 1237 (1630)
T 1xi4_A         1184 AE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRL------------ASTLVHLGEY 1237 (1630)
T ss_pred             HH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHH------------HHHHHHhCCH
Confidence            85 44442    133 4466778999999999999999999986        234444            9999999999


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAE  328 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  328 (470)
                      ++|++.++++.         +..+|...+.++...|+|..|..+... +..+   ++.+..++..|...|.+++|+..++
T Consensus      1238 q~AIEaarKA~---------n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A         1238 QAAVDGARKAN---------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred             HHHHHHHHHhC---------CHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999982         245799999999999999999987764 4444   4556688999999999999999999


Q ss_pred             HHHhcCCC-hhHHHHHHHHHHHhhcccc----cchhhhccCCCCCCHHHHHHHHHHHHHHcC
Q psy16214        329 KIYKMDNS-RENHNFLEEAKRLLKRSEV----KDYYKILGVTKNASSDDIKKAYRKRALVHH  385 (470)
Q Consensus       329 ~a~~~~p~-~~~~~~l~~~~~~~~~~~~----~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~  385 (470)
                      +++.++|. ......|..+....+..+.    +-|.+...+++-...-+-...|.++...|+
T Consensus      1305 ~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~ 1366 (1630)
T 1xi4_A         1305 AALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 1366 (1630)
T ss_pred             HHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHH
Confidence            99999976 4445555555544443332    233444444443333344444666666665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.82  E-value=1.5e-19  Score=162.57  Aligned_cols=224  Identities=17%  Similarity=0.100  Sum_probs=178.0

Q ss_pred             HhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCCHHHHHHH
Q psy16214         15 YKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--------DPRFSKGLIRQ   78 (470)
Q Consensus        15 ~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l   78 (470)
                      ...|++++|+.+|+++++.        +|..+.++..+|.++...|++++|+..+++++++        +|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4568888888888888873        3667899999999999999999999999999987        35667899999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---
Q psy16214         79 IKCNIALGDAPTARSNLKALQELD--------PDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ---  147 (470)
Q Consensus        79 a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---  147 (470)
                      |.++...|++++|+..+.+++.+.        |....++.            ..+..++..|++++|+.++++++..   
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLN------------NLALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH------------HHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999873        33333443            3444578889999999999999998   


Q ss_pred             -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc---------CCCChHHHHHHHHHHhccCChHHH------HH
Q psy16214        148 -----GVASKTYKLMKAECLAHLNRLQEAQEIANSILAT---------DKQNPDAVFVRGLCLYYDDKMDLA------VN  207 (470)
Q Consensus       148 -----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A------~~  207 (470)
                           .|....++..+|.++...|++++|+..+++++..         .+.....+..++......+....+      ..
T Consensus       160 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (283)
T 3edt_B          160 RLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGS  239 (283)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence                 6777788999999999999999999999999986         555667788888777765554433      33


Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       208 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                      .++.+....|....++..+            |.++...|++++|+.+++++++..
T Consensus       240 ~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          240 WYKACKVDSPTVNTTLRSL------------GALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             ---CCCCCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhh
Confidence            3333333445555555555            999999999999999999998753

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.82  E-value=1.7e-17  Score=149.51  Aligned_cols=239  Identities=12%  Similarity=0.015  Sum_probs=183.5

Q ss_pred             HHHcCChH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         48 YMMLGMYT-YALDDAKLAVSLDPRFSKGLIRQIKCNIALGD----------APTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        48 ~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      ....|.+. +|+..+.+++.++|++..+|...+.++..++.          +++++..+..++..+|.+..+|...+.+.
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL  118 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL  118 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34566665 89999999999999999999999999988876          68999999999999999999998888774


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        117 TMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR-LQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                      ...          ....+++++..++++++.+|.+..+|..++.++...|. ++++++++.+++..+|.+..+|..++.+
T Consensus       119 ~~l----------~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~l  188 (331)
T 3dss_A          119 SRL----------PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  188 (331)
T ss_dssp             HHC----------SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             hcc----------CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            321          11258999999999999999999999999999999999 6999999999999999999999999999


Q ss_pred             Hhcc--------------CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh
Q psy16214        196 LYYD--------------DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-GKNQEAFDIYTEALK  260 (470)
Q Consensus       196 ~~~~--------------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~  260 (470)
                      +...              +.+++++.++.+++..+|++..+|..+            ..++... |.             
T Consensus       189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~------------r~ll~~~~~~-------------  243 (331)
T 3dss_A          189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYH------------RWLLGAGSGR-------------  243 (331)
T ss_dssp             HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHSSSCG-------------
T ss_pred             HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhccCc-------------
Confidence            8776              458899999999999999999999866            3333222 10             


Q ss_pred             hcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCCC
Q psy16214        261 IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFH---ALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       261 ~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~a~~~~p~  336 (470)
                        +. .          +  -...+.++++++.+++++++.|++..++..++.+..   ..+..+++..++.+++++||-
T Consensus       244 --~~-~----------~--~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~  307 (331)
T 3dss_A          244 --CE-L----------S--VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  307 (331)
T ss_dssp             --GG-C----------C--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred             --cc-c----------c--hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence              00 0          0  011233455666666666666665444433333222   235566666666666666665

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.82  E-value=1.5e-18  Score=150.79  Aligned_cols=187  Identities=13%  Similarity=0.119  Sum_probs=124.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH---HHHHHHHH
Q psy16214        122 FEGASKAFEANDYRTAMFYLDRAMDQGVASK---TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD---AVFVRGLC  195 (470)
Q Consensus       122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~---~~~~la~~  195 (470)
                      +..|..++..|++++|+..|++++...|.++   .+++.+|.++...|++++|+..|+++++.+|+++.   +++.+|.+
T Consensus         8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~   87 (225)
T 2yhc_A            8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT   87 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence            4445555555555555555555555555432   34555555555555555555555555555555443   45555555


Q ss_pred             HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccch------
Q psy16214        196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ------  269 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------  269 (470)
                      +...+..     .+.           .+            ...+..+...|++++|+..|+++++..|+++...      
T Consensus        88 ~~~~~~~-----~~~-----------~~------------~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l  139 (225)
T 2yhc_A           88 NMALDDS-----ALQ-----------GF------------FGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL  139 (225)
T ss_dssp             HHHHHC------------------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred             HHhhhhh-----hhh-----------hh------------hccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence            5443321     000           01            1115555668899999999999999999976431      


Q ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        270 -------SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL---KALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       270 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                             ......+|.++...|++++|+..|+++++..|+++   .++..+|.++..+|++++|+..++++....|+
T Consensus       140 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          140 VFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence                   11225789999999999999999999999999986   78999999999999999999999999999886

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.81  E-value=7e-19  Score=158.16  Aligned_cols=190  Identities=19%  Similarity=0.136  Sum_probs=162.6

Q ss_pred             HhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--------CCCChHHHHHH
Q psy16214        129 FEANDYRTAMFYLDRAMDQ--------GVASKTYKLMKAECLAHLNRLQEAQEIANSILAT--------DKQNPDAVFVR  192 (470)
Q Consensus       129 ~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l  192 (470)
                      ...+++++|+..++++++.        .|....++..+|.++...|++++|+..+++++..        .|....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3456777777777777763        3566788999999999999999999999999987        35567789999


Q ss_pred             HHHHhccCChHHHHHHHHHHHhh--------CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Q psy16214        193 GLCLYYDDKMDLAVNHFQLLLKL--------APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI---  261 (470)
Q Consensus       193 a~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---  261 (470)
                      |.++...|++++|+.++++++..        +|....++..+            |.++...|++++|+.++++++..   
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~~~  159 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNL------------ALLCQNQGKAEEVEYYYRRALEIYAT  159 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987        35455555555            99999999999999999999988   


Q ss_pred             -----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------------
Q psy16214        262 -----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK-------------------------------------  299 (470)
Q Consensus       262 -----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------------------------  299 (470)
                           .|.    ...++..+|.++..+|++++|+.++++++.+                                     
T Consensus       160 ~~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T 3edt_B          160 RLGPDDPN----VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG  235 (283)
T ss_dssp             HSCTTCHH----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred             hcCCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence                 343    5788999999999999999999999999986                                     


Q ss_pred             ------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        300 ------------DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       300 ------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                                  .|..+.++..+|.++..+|++++|+.+|++++++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence                        24456789999999999999999999999999864

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=5.3e-19  Score=147.31  Aligned_cols=169  Identities=11%  Similarity=-0.017  Sum_probs=139.1

Q ss_pred             CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214         34 CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK  113 (470)
Q Consensus        34 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  113 (470)
                      +|.....++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++.....++
T Consensus         2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            4455567788888888888888888888888888888888888888888888999999998888888888 766544333


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC--hHHHHH
Q psy16214        114 ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN--PDAVFV  191 (470)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~  191 (470)
                      .+..           ...+....|+..+++++..+|+++.++..+|.++...|++++|+..++++++.+|+.  +.++..
T Consensus        81 ~~~~-----------~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~  149 (176)
T 2r5s_A           81 KLEL-----------HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT  149 (176)
T ss_dssp             HHHH-----------HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred             HHHH-----------HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence            3211           111222347889999999999999999999999999999999999999999999976  569999


Q ss_pred             HHHHHhccCChHHHHHHHHHHHh
Q psy16214        192 RGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                      +|.++...|+.++|+..|++++.
T Consensus       150 l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          150 FMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999999999999999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.80  E-value=4.3e-17  Score=167.35  Aligned_cols=269  Identities=13%  Similarity=0.080  Sum_probs=184.8

Q ss_pred             hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy16214         16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNL   95 (470)
Q Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~   95 (470)
                      ..++|++|+++++++     +.+.+|+.+|.++...|++++|+..|.++     +++..+..+|.++.++|++++|+++|
T Consensus      1088 ~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred             HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            678888888888865     56889999999999999999999999775     78889999999999999999999999


Q ss_pred             HHHHhcCCCChHHHHHHHHHHHHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214         96 KALQELDPDNPAIAQESKALETMAK----------------NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA  159 (470)
Q Consensus        96 ~~~l~~~p~~~~~~~~l~~~~~~~~----------------~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a  159 (470)
                      ..+.+..++. .+...++..+...+                ....|..++..|+|++|+.+|.++        ..|..++
T Consensus      1158 ~mArk~~~e~-~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A         1158 QMARKKARES-YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred             HHHHhhcccc-cccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHH
Confidence            9988877442 11112333222211                122333344445555555555543        2444455


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .++.++|++++|++.++++     .+..+|...+.++...|++..|..+... +..+|+..               .+.+
T Consensus      1229 ~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deL---------------eeli 1287 (1630)
T 1xi4_A         1229 STLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL---------------EELI 1287 (1630)
T ss_pred             HHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHH---------------HHHH
Confidence            5555555555555555554     2345555555555555555555554442 32333222               2237


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK--MGKYNEAIADCTLALEKDP-----NYLKALSRRCK  312 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~  312 (470)
                      ..|...|.+++|+.++++++.+++.    +...+..+|.++.+  -++..++++.|...+.+.|     .+...|..+..
T Consensus      1288 ~yYe~~G~feEAI~LlE~aL~Lera----H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~ 1363 (1630)
T 1xi4_A         1288 NYYQDRGYFEELITMLEAALGLERA----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 1363 (1630)
T ss_pred             HHHHHcCCHHHHHHHHHHHhccChh----HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHH
Confidence            8889999999999999999999988    45568777777765  4577888999998888877     67889999999


Q ss_pred             HHHHhCCHHHHHHHHH
Q psy16214        313 CFHALGQYKECVIDAE  328 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~  328 (470)
                      +|.+-|+++.|+..+-
T Consensus      1364 LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A         1364 LYDKYEEYDNAIITMM 1379 (1630)
T ss_pred             HHHhcccHHHHHHHHH
Confidence            9999999999994433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.80  E-value=3.2e-17  Score=148.25  Aligned_cols=187  Identities=9%  Similarity=-0.089  Sum_probs=163.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-Ch
Q psy16214         12 NTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL-G-DA   88 (470)
Q Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-~~   88 (470)
                      ......+..++|+.+++++|..+|++..+|+.++.++..++ .+++++..++.++..+|++..+|..++.++..+ + ++
T Consensus        62 ~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           62 AIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCh
Confidence            33444555679999999999999999999999999999999 599999999999999999999999999999998 8 99


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR-  167 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~-  167 (470)
                      ++++..+.++++.+|.|..+|...+.+....+.+..+    ....+.+++..++++++.+|.+..+|..++.++...++ 
T Consensus       142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~----~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~  217 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI----SEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA  217 (349)
T ss_dssp             HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC----CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc----chhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999988886665543210    01123588999999999999999999999999999887 


Q ss_pred             ------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCCh
Q psy16214        168 ------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKM  202 (470)
Q Consensus       168 ------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~  202 (470)
                            ++++++++.+++..+|++..+|+.+..++...|..
T Consensus       218 ~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          218 ETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence                  79999999999999999999999988888776664

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.80  E-value=2.1e-17  Score=149.46  Aligned_cols=253  Identities=10%  Similarity=-0.044  Sum_probs=193.6

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG-DAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      ...++..+..+....+..++|+..+.+++.++|++..+|..++.++..+| .+++++..+..++..+|++..+|...+.+
T Consensus        53 y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wl  132 (349)
T 3q7a_A           53 YKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLL  132 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35556666666666777889999999999999999999999999999999 59999999999999999999999888877


Q ss_pred             HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHhhcCCCCh
Q psy16214        116 ETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ--------EAQEIANSILATDKQNP  186 (470)
Q Consensus       116 ~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~--------~A~~~~~~~l~~~p~~~  186 (470)
                      ....           .+ ++++++..++++++.+|.+..+|..++.++...+.++        ++++.+.++++.+|.+.
T Consensus       133 L~~l-----------~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~  201 (349)
T 3q7a_A          133 LDRI-----------SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN  201 (349)
T ss_dssp             HHHH-----------CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHh-----------cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH
Confidence            4332           13 6789999999999999999999999999999998888        99999999999999999


Q ss_pred             HHHHHHHHHHhccCC-------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH----------
Q psy16214        187 DAVFVRGLCLYYDDK-------MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQ----------  249 (470)
Q Consensus       187 ~~~~~la~~~~~~g~-------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  249 (470)
                      .+|..++.++...+.       +++++.++.+++..+|++..+|..+            ..++...|+..          
T Consensus       202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Yl------------r~Ll~~~~~~~~~~~~~~~~~  269 (349)
T 3q7a_A          202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYL------------RGFLKHFSLPLVPILPAILPY  269 (349)
T ss_dssp             HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCCSGGGHHHHGGG
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhcCCCccccccccccc
Confidence            999999999999887       6899999999999999999999887            55555444320          


Q ss_pred             ------HH-HHHHHHHHhhcccC-----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHH
Q psy16214        250 ------EA-FDIYTEALKIDARN-----ININSKLLHNRATVLFKMGKYNEAIADCTLAL-EKDPNYLKALSRRCK  312 (470)
Q Consensus       250 ------~A-~~~~~~al~~~p~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~  312 (470)
                            .. -...+.++......     ....+.++..++.+|...|+.++|++.|+... +.+|-....|..++.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence                  00 01111111111110     01134556666666666666666666666654 445555555544443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=5.1e-20  Score=170.14  Aligned_cols=270  Identities=13%  Similarity=0.058  Sum_probs=139.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      ++.|..+|..+...|++++|++.|.++     .++..+...+.++...|++++|+.+++.+++..++ +.+...++.+|.
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~  105 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA  105 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence            456777777777777777777777653     34556777777777777777777777777664333 566667777777


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA  163 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  163 (470)
                      ++|++.++.+.++.     |+ ...+..+|..            ++..|.|++|..+|.++        ..+..+|.++.
T Consensus       106 Klg~l~e~e~f~~~-----pn-~~a~~~IGd~------------~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~  159 (449)
T 1b89_A          106 KTNRLAELEEFING-----PN-NAHIQQVGDR------------CYDEKMYDAAKLLYNNV--------SNFGRLASTLV  159 (449)
T ss_dssp             ---CHHHHTTTTTC-----C-----------------------------CTTTHHHHHHHT--------TCHHHHHHHHH
T ss_pred             HhCCHHHHHHHHcC-----Cc-HHHHHHHHHH------------HHHcCCHHHHHHHHHHh--------hhHHHHHHHHH
Confidence            77777776666542     32 2344444433            66778888888888866        36778899999


Q ss_pred             HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214        164 HLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF  243 (470)
Q Consensus       164 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (470)
                      ++|++++|++.+.++     +++.+|.....++...|+++.|..+... +..+|+...   .+            ...|.
T Consensus       160 ~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~---~l------------v~~Ye  218 (449)
T 1b89_A          160 HLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELE---EL------------INYYQ  218 (449)
T ss_dssp             TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHH---HH------------HHHHH
T ss_pred             HhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHH---HH------------HHHHH
Confidence            999999999999988     4688899988999999999999777665 335555422   23            77889


Q ss_pred             hcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHH
Q psy16214        244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK--MGKYNEAIADCTLALEKDP-----NYLKALSRRCKCFHA  316 (470)
Q Consensus       244 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~  316 (470)
                      +.|++++|+.++++++.+++.    ...++..+|.+|.+  .++..+.++.|...+.+.|     .++..|..+..+|..
T Consensus       219 k~G~~eEai~lLe~aL~le~a----h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~  294 (449)
T 1b89_A          219 DRGYFEELITMLEAALGLERA----HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK  294 (449)
T ss_dssp             HTTCHHHHHHHHHHHTTSTTC----CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhCCcHH----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999877    45668888887765  4567778888887777777     778889999999999


Q ss_pred             hCCHHHHHHHHHHH
Q psy16214        317 LGQYKECVIDAEKI  330 (470)
Q Consensus       317 ~g~~~~A~~~~~~a  330 (470)
                      -++++.|+...-..
T Consensus       295 ~~e~d~A~~tm~~h  308 (449)
T 1b89_A          295 YEEYDNAIITMMNH  308 (449)
T ss_dssp             TTCHHHHHHHHHHS
T ss_pred             hchHHHHHHHHHhC
Confidence            99999998755443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.80  E-value=4e-19  Score=148.03  Aligned_cols=167  Identities=13%  Similarity=0.079  Sum_probs=141.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHH
Q psy16214        149 VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR  228 (470)
Q Consensus       149 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~  228 (470)
                      |.....++.+|..+...|++++|+..++++++.+|+++.+++.+|.++...|++++|+..+++++...| ++......  
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~--   79 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLI--   79 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHH--
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHH--
Confidence            444556778999999999999999999999999999999999999999999999999999999999999 66554433  


Q ss_pred             HHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH
Q psy16214        229 AKLLKAKKEEGNEK-FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY--LK  305 (470)
Q Consensus       229 ~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~  305 (470)
                                +.+. ...+...+|+..+++++..+|++    ..+++.+|.++...|++++|+..|+++++.+|+.  +.
T Consensus        80 ----------~~~~~~~~~~~~~a~~~~~~al~~~P~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  145 (176)
T 2r5s_A           80 ----------AKLELHQQAAESPELKRLEQELAANPDN----FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGE  145 (176)
T ss_dssp             ----------HHHHHHHHHTSCHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTH
T ss_pred             ----------HHHHHHhhcccchHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHH
Confidence                      2221 12223345899999999999994    5679999999999999999999999999999876  66


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        306 ALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       306 ~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      ++..+|.++..+|+.++|+..|++++.
T Consensus       146 a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          146 VKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            999999999999999999999999875

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.79  E-value=3.9e-18  Score=153.86  Aligned_cols=169  Identities=12%  Similarity=0.020  Sum_probs=157.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214        148 GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK  227 (470)
Q Consensus       148 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  227 (470)
                      .|.+...+..+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++..+|+........ 
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~-  191 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA-  191 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH-
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH-
Confidence            4888999999999999999999999999999999999999999999999999999999999999999999766554444 


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HH
Q psy16214        228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY--LK  305 (470)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~  305 (470)
                                 +..+...++.++|+..+++++..+|+    ...+++++|.++...|++++|+..|.++++.+|++  ..
T Consensus       192 -----------~~~l~~~~~~~~a~~~l~~al~~~P~----~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~  256 (287)
T 3qou_A          192 -----------QIELLXQAADTPEIQQLQQQVAENPE----DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ  256 (287)
T ss_dssp             -----------HHHHHHHHTSCHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred             -----------HHHHHhhcccCccHHHHHHHHhcCCc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence                       66778888999999999999999999    45679999999999999999999999999999999  89


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        306 ALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       306 ~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      ++..++.++..+|+.++|+..|++++.
T Consensus       257 a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          257 TRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            999999999999999999999999875

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.79  E-value=2.1e-18  Score=134.71  Aligned_cols=103  Identities=29%  Similarity=0.495  Sum_probs=64.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |..+++.|++++|+..|+++++++|.    .+.+|.++|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|
T Consensus        20 G~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           20 GNEYFKKGDYPTAMRHYNEAVKRDPE----NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR   95 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence            66666666666666666666666666    33456666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q psy16214        319 QYKECVIDAEKIYKMDNS-RENHNFLEE  345 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~~p~-~~~~~~l~~  345 (470)
                      ++++|+..|+++++++|+ .++...|..
T Consensus        96 ~~~~A~~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           96 EWSKAQRAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            666666666666666665 444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.78  E-value=8.2e-19  Score=141.01  Aligned_cols=121  Identities=12%  Similarity=0.064  Sum_probs=111.6

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY  286 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~  286 (470)
                      ..+++++.++|++..++..+            |.+++..|++++|+..|++++.++|.    ++.+|.++|.++..+|++
T Consensus        23 ~~l~~al~l~p~~~~~~~~l------------g~~~~~~g~~~eA~~~~~~al~~~P~----~~~~~~~lg~~~~~~g~~   86 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSY------------AYDFYNKGRIEEAEVFFRFLCIYDFY----NVDYIMGLAAIYQIKEQF   86 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHhCCCHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHccH
Confidence            44667788999999998888            99999999999999999999999999    456799999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214        287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFL  343 (470)
Q Consensus       287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l  343 (470)
                      ++|+..|+++++++|+++.+++++|.+|..+|++++|+..|++++++.|+++.....
T Consensus        87 ~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A  143 (151)
T 3gyz_A           87 QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKA  143 (151)
T ss_dssp             HHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987644433

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.78  E-value=1.3e-17  Score=150.45  Aligned_cols=169  Identities=17%  Similarity=0.046  Sum_probs=154.5

Q ss_pred             CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214         34 CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK  113 (470)
Q Consensus        34 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  113 (470)
                      -|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+.....    
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~----  188 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG----  188 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH----
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH----
Confidence            4889999999999999999999999999999999999999999999999999999999999999999999543332    


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC--hHHHHH
Q psy16214        114 ALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQN--PDAVFV  191 (470)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~  191 (470)
                              ...+..+...++.+.|+..+++++..+|++..+++.+|.++...|++++|+..|.++++.+|++  ..++..
T Consensus       189 --------~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~  260 (287)
T 3qou_A          189 --------LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT  260 (287)
T ss_dssp             --------HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred             --------HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence                    2223335566778889999999999999999999999999999999999999999999999998  889999


Q ss_pred             HHHHHhccCChHHHHHHHHHHHh
Q psy16214        192 RGLCLYYDDKMDLAVNHFQLLLK  214 (470)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~~l~  214 (470)
                      ++.++...|+.++|+..|++++.
T Consensus       261 l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          261 FQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.78  E-value=5.5e-18  Score=154.62  Aligned_cols=217  Identities=14%  Similarity=0.032  Sum_probs=150.5

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy16214         15 YKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMM-LGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARS   93 (470)
Q Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~   93 (470)
                      +..|++++|.++++++.+..+..          ++. .+++++|+..|.++              +.+|...|++++|+.
T Consensus         2 ~~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            2 IAAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHH
Confidence            34678888888888888766542          112 47888888888775              567788888888888


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16214         94 NLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQE  173 (470)
Q Consensus        94 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~  173 (470)
                      +|.+++.+.+..                          ++...+              ..++..+|.++...|++++|+.
T Consensus        58 ~~~~al~~~~~~--------------------------~~~~~~--------------a~~~~~lg~~~~~~g~~~~A~~   97 (307)
T 2ifu_A           58 AYLQEAEAHANN--------------------------RSLFHA--------------AKAFEQAGMMLKDLQRMPEAVQ   97 (307)
T ss_dssp             HHHHHHHHHHHT--------------------------TCHHHH--------------HHHHHHHHHHHHHTTCGGGGHH
T ss_pred             HHHHHHHHHHHc--------------------------CCHHHH--------------HHHHHHHHHHHHhCCCHHHHHH
Confidence            888887754321                          111111              2345567888888888888888


Q ss_pred             HHHHHhhcCCCC------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy16214        174 IANSILATDKQN------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGK  247 (470)
Q Consensus       174 ~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (470)
                      +|++++.+.+..      ..++..+|.++.. |++++|+.+|++++.+.|......      .....+.+.|.++...|+
T Consensus        98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~------~~~~~~~~lg~~~~~~g~  170 (307)
T 2ifu_A           98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR------QAAELIGKASRLLVRQQK  170 (307)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh------HHHHHHHHHHHHHHHcCC
Confidence            888888764322      3567788888888 888888888888888765431110      011122333888888888


Q ss_pred             HHHHHHHHHHHHhhcccCcc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214        248 NQEAFDIYTEALKIDARNIN--INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY  303 (470)
Q Consensus       248 ~~~A~~~~~~al~~~p~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (470)
                      +++|+.+|++++.+.|.+..  ....++..+|.++..+|++++|+.+|++++ ++|..
T Consensus       171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            88888888888887765432  123467777888888888888888888888 87765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.77  E-value=1.6e-17  Score=151.52  Aligned_cols=208  Identities=14%  Similarity=0.096  Sum_probs=164.7

Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA  163 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  163 (470)
                      .|++++|.++++++.+..+..                      ++. .++++.|+..|.++              +.++.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~----------------------~~~~~~~~~~A~~~~~~a--------------~~~~~   47 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTS----------------------FMKWKPDYDSAASEYAKA--------------AVAFK   47 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCC----------------------SSSCSCCHHHHHHHHHHH--------------HHHHH
T ss_pred             cchHHHHHHHHHHHHHHcccc----------------------ccCCCCCHHHHHHHHHHH--------------HHHHH
Confidence            466777888887777655431                      112 46788888777764              56788


Q ss_pred             HcCCHHHHHHHHHHHhhcCCCC------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHH
Q psy16214        164 HLNRLQEAQEIANSILATDKQN------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE  237 (470)
Q Consensus       164 ~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~  237 (470)
                      ..|++++|+..+.+++.+.+..      ..++..+|.++...|++++|+.+|++++.+.+.......      ....+.+
T Consensus        48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~------~a~~~~~  121 (307)
T 2ifu_A           48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT------AAMALDR  121 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH------HHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHH
Confidence            8999999999999998876533      458889999999999999999999999987543221110      1122234


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCc--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNI--NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY------LKALSR  309 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  309 (470)
                      .|.++.. |++++|+.+|++++.+.|...  .....++.++|.++..+|++++|+.+|++++.+.|.+      ..++..
T Consensus       122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  200 (307)
T 2ifu_A          122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA  200 (307)
T ss_dssp             HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence            4999988 999999999999999887532  2236789999999999999999999999999986544      357889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        310 RCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       310 la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +|.++..+|++++|+.+|++++ ++|+
T Consensus       201 ~g~~~~~~g~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          201 QVLVQLHRADYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence            9999999999999999999999 9996

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.77  E-value=1.3e-17  Score=165.79  Aligned_cols=165  Identities=13%  Similarity=0.031  Sum_probs=138.1

Q ss_pred             cCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy16214         17 LKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK   96 (470)
Q Consensus        17 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~   96 (470)
                      .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++++|++..++..+|.++..+|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHH
Q psy16214         97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHL---NRLQEAQE  173 (470)
Q Consensus        97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~---~~~~~A~~  173 (470)
                      ++++++|++..++..++.+            +...|++++|+..++++++.+|++..++..++.++...   |++++|+.
T Consensus        82 ~al~~~p~~~~~~~~la~~------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHA------------LEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHH------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            9999999999888666665            67789999999999999999999999999999999999   99999999


Q ss_pred             HHHHHhhcCCCChHHHHHHH
Q psy16214        174 IANSILATDKQNPDAVFVRG  193 (470)
Q Consensus       174 ~~~~~l~~~p~~~~~~~~la  193 (470)
                      .++++++.+|.+...+..++
T Consensus       150 ~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          150 QVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHhcCCcccChHHHhC
Confidence            99999999999988887776

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.76  E-value=8.5e-18  Score=147.05  Aligned_cols=206  Identities=9%  Similarity=-0.069  Sum_probs=176.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHhhcCCCChH-------
Q psy16214        122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK-------AECLAHLNRLQEAQEIANSILATDKQNPD-------  187 (470)
Q Consensus       122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~-------a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------  187 (470)
                      +..+.-+ ..+++..|...|.+++..+|....+|..+       +.++...++..+++..+.+.+.+.|....       
T Consensus        11 ~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g   89 (282)
T 4f3v_A           11 FESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGG   89 (282)
T ss_dssp             HHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCT
T ss_pred             HHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCC
Confidence            4555554 57999999999999999999999999999       89999999999999999999998776533       


Q ss_pred             --------------HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16214        188 --------------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFD  253 (470)
Q Consensus       188 --------------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  253 (470)
                                    +...++.++...|++++|...|..++...|++. ....+            |.++++.++|++|+.
T Consensus        90 ~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~------------a~l~~~~~r~~dA~~  156 (282)
T 4f3v_A           90 LYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMK------------AVVYGAAERWTDVID  156 (282)
T ss_dssp             TTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHH------------HHHHHHTTCHHHHHH
T ss_pred             cccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHH------------HHHHHHcCCHHHHHH
Confidence                          445588999999999999999999999999887 66666            999999999999999


Q ss_pred             HHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        254 IYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD--PN-YLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       254 ~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                      .++.++...+  +.....+++++|.++..+|++++|+.+|++++...  |. .+.+++.+|.++..+|+.++|...|+++
T Consensus       157 ~l~~a~~~~d--~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          157 QVKSAGKWPD--KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHTTGGGCSC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhhccCC--cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9997766431  11124689999999999999999999999998654  65 6789999999999999999999999999


Q ss_pred             HhcCCChhHHHHH
Q psy16214        331 YKMDNSRENHNFL  343 (470)
Q Consensus       331 ~~~~p~~~~~~~l  343 (470)
                      +..+|+..+...|
T Consensus       235 ~a~~P~~~~~~aL  247 (282)
T 4f3v_A          235 QTTHPEPKVAAAL  247 (282)
T ss_dssp             HHHSCCHHHHHHH
T ss_pred             HhcCCcHHHHHHH
Confidence            9999973333333

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.76  E-value=5.2e-19  Score=163.45  Aligned_cols=261  Identities=11%  Similarity=0.016  Sum_probs=121.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      ..-..|+.++|.+++++.     +.+.+|..+|.++...|++++|++.|.++     .++.++...+.++...|++++|+
T Consensus        12 ll~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           12 LIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence            334678899999999998     34579999999999999999999999774     46668999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy16214         93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQ  172 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~  172 (470)
                      .+++.+.+..++ +.+...++.++            .+.|++.++...++     .|+ ...+..+|..+...|+|++|.
T Consensus        82 ~yl~~ark~~~~-~~i~~~Li~~Y------------~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~  142 (449)
T 1b89_A           82 KYLQMARKKARE-SYVETELIFAL------------AKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAK  142 (449)
T ss_dssp             ----------------------------------------CHHHHTTTTT-----CC-----------------CTTTHH
T ss_pred             HHHHHHHHhCcc-chhHHHHHHHH------------HHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHH
Confidence            999999885433 55555555553            34456666555553     243 358899999999999999999


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy16214        173 EIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAF  252 (470)
Q Consensus       173 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  252 (470)
                      .+|.++        ..|..+|.++..+|++++|++.++++     .++..|...            +.++...|+++.|.
T Consensus       143 ~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v------------~~aCv~~~ef~lA~  197 (449)
T 1b89_A          143 LLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEV------------CFACVDGKEFRLAQ  197 (449)
T ss_dssp             HHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHH------------HHHHHHTTCHHHHH
T ss_pred             HHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHH------------HHHHHHcCcHHHHH
Confidence            999977        57899999999999999999999999     356677666            89999999999998


Q ss_pred             HHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--hCCHHHHHHHHHHH
Q psy16214        253 DIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA--LGQYKECVIDAEKI  330 (470)
Q Consensus       253 ~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~a  330 (470)
                      .+... +...|++       ...+..+|.+.|++++|+.++++++.+++.+..++..+|.+|.+  .++..++++.|...
T Consensus       198 ~~~l~-L~~~ad~-------l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~  269 (449)
T 1b89_A          198 MCGLH-IVVHADE-------LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR  269 (449)
T ss_dssp             HTTTT-TTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred             HHHHH-HHhCHhh-------HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            77775 4455552       44578899999999999999999999999999999999988874  56777888877766


Q ss_pred             HhcCC
Q psy16214        331 YKMDN  335 (470)
Q Consensus       331 ~~~~p  335 (470)
                      +.+.|
T Consensus       270 ini~k  274 (449)
T 1b89_A          270 VNIPK  274 (449)
T ss_dssp             SCHHH
T ss_pred             hcCcH
Confidence            66655

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.76  E-value=3.1e-18  Score=149.81  Aligned_cols=208  Identities=12%  Similarity=0.041  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHH-------HHHHHHcCChHHHHHHHHHHHhcCCCCH----
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNR-------AACYMMLGMYTYALDDAKLAVSLDPRFS----   72 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~-------a~~~~~~g~~~~A~~~~~~al~~~p~~~----   72 (470)
                      ...++..|..+ ..+++..|...|.+++..+|+.+++|.++       +.++..++++.+++..+.+.+.+.|...    
T Consensus         7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~   85 (282)
T 4f3v_A            7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI   85 (282)
T ss_dssp             HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred             HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence            45678888886 68999999999999999999999999999       8999999999999999999999887643    


Q ss_pred             -----------------HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy16214         73 -----------------KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYR  135 (470)
Q Consensus        73 -----------------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  135 (470)
                                       .+...++.++...|++++|.+.|..++...|.+. ..            +..+..++..++|+
T Consensus        86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~------------~~~a~l~~~~~r~~  152 (282)
T 4f3v_A           86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VA------------WMKAVVYGAAERWT  152 (282)
T ss_dssp             ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HH------------HHHHHHHHHTTCHH
T ss_pred             ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HH------------HHHHHHHHHcCCHH
Confidence                             3445588999999999999999999998888766 54            44445588999999


Q ss_pred             HHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC--CC-ChHHHHHHHHHHhccCChHHHHHHHH
Q psy16214        136 TAMFYLDRAMDQGVAS--KTYKLMKAECLAHLNRLQEAQEIANSILATD--KQ-NPDAVFVRGLCLYYDDKMDLAVNHFQ  210 (470)
Q Consensus       136 ~A~~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~  210 (470)
                      +|+..++.+....+..  ..+++.+|.++..+|++++|+..|++++...  |. .+++++.+|.++..+|+.++|...|+
T Consensus       153 dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          153 DVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             HHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999998776653221  3588999999999999999999999998644  55 56799999999999999999999999


Q ss_pred             HHHhhCCChHHHHHHH
Q psy16214        211 LLLKLAPDHAKAKETY  226 (470)
Q Consensus       211 ~~l~~~p~~~~~~~~~  226 (470)
                      +++..+|+ ..+...+
T Consensus       233 ~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          233 WLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHSCC-HHHHHHH
T ss_pred             HHHhcCCc-HHHHHHH
Confidence            99999999 7765544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.75  E-value=4.7e-14  Score=140.31  Aligned_cols=319  Identities=8%  Similarity=-0.030  Sum_probs=239.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCC--CCHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM---YTYALDDAKLAVSLDP--RFSKGLIR   77 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p--~~~~~~~~   77 (470)
                      +...|..........+.++.+...|++++...|.....|...+..-...++   ++.+...|++++...|  .++..|..
T Consensus        65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~  144 (679)
T 4e6h_A           65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS  144 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            456788888888888899999999999999999999999888888888888   9999999999998873  56677766


Q ss_pred             HHHHHHHcCCh----HH----HHHHHHHHHhc----CCCChHHHHHHHHHHH---------HH-----------------
Q psy16214         78 QIKCNIALGDA----PT----ARSNLKALQEL----DPDNPAIAQESKALET---------MA-----------------  119 (470)
Q Consensus        78 la~~~~~~g~~----~~----A~~~~~~~l~~----~p~~~~~~~~l~~~~~---------~~-----------------  119 (470)
                      ........++.    ++    ....|++++..    ++....+|........         ..                 
T Consensus       145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP  224 (679)
T 4e6h_A          145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP  224 (679)
T ss_dssp             HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence            66555444443    22    33566666642    4555555544332210         00                 


Q ss_pred             -------------------------------HHHHHHHHHHh--------------------------------------
Q psy16214        120 -------------------------------KNFEGASKAFE--------------------------------------  130 (470)
Q Consensus       120 -------------------------------~~~~~a~~~~~--------------------------------------  130 (470)
                                                     ..+..|...+.                                      
T Consensus       225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l  304 (679)
T 4e6h_A          225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI  304 (679)
T ss_dssp             CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence                                           01111111110                                      


Q ss_pred             --------cCC---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHhhcCCCChHHHHHH
Q psy16214        131 --------AND---------YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQ-EIANSILATDKQNPDAVFVR  192 (470)
Q Consensus       131 --------~~~---------~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~l  192 (470)
                              ..+         .......|++++...|..+.+|+..+..+...|+.++|. ..|++++...|.+...|+..
T Consensus       305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~  384 (679)
T 4e6h_A          305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSL  384 (679)
T ss_dssp             HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                    000         223456788999999999999999999999999999997 99999999999999999999


Q ss_pred             HHHHhccCChHHHHHHHHHHHhhC-----------CC-----------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q psy16214        193 GLCLYYDDKMDLAVNHFQLLLKLA-----------PD-----------HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQE  250 (470)
Q Consensus       193 a~~~~~~g~~~~A~~~~~~~l~~~-----------p~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (470)
                      +.+....|+++.|...|++++...           |.           ...+|..+            +....+.+..+.
T Consensus       385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y------------~~~erR~~~l~~  452 (679)
T 4e6h_A          385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVY------------MNTMKRIQGLAA  452 (679)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH------------HHHHHHHHCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHH------------HHHHHHcCCHHH
Confidence            999999999999999999998752           42           12234433            666677789999


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16214        251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGK-YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK  329 (470)
Q Consensus       251 A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  329 (470)
                      |..+|.+|++..|..   ...+|...|.+....++ ++.|...|+.+++..|+++..+...+......|+.+.|...|++
T Consensus       453 AR~vf~~A~~~~~~~---~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfer  529 (679)
T 4e6h_A          453 SRKIFGKCRRLKKLV---TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES  529 (679)
T ss_dssp             HHHHHHHHHHTGGGS---CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC---ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            999999999873322   23557677777777654 89999999999999999999999999999999999999999999


Q ss_pred             HHhcCCC
Q psy16214        330 IYKMDNS  336 (470)
Q Consensus       330 a~~~~p~  336 (470)
                      ++...|+
T Consensus       530 al~~~~~  536 (679)
T 4e6h_A          530 SIDKISD  536 (679)
T ss_dssp             HTTTSSS
T ss_pred             HHHhcCC
Confidence            9999885

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.75  E-value=1.8e-17  Score=149.00  Aligned_cols=197  Identities=19%  Similarity=0.178  Sum_probs=161.0

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      ..+..++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAEC  161 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~  161 (470)
                      +..+|++++|+..|+++++++|+++..+.........               ..++...........|.+..+...++.+
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~i~~~l~~l  146 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---------------IAKKKRWNSIEERRIHQESELHSYLTRL  146 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---------------HHHHHHHHHHHHTCCCCCCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---------------HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999999999999998764322111111000               0111122223334567777777767665


Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-CChHHHHHHHHHHHhh
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-DKMDLAVNHFQLLLKL  215 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~  215 (470)
                      +  .|++++|++.++++++.+|.+......++.++... +.+++|...|.++.+.
T Consensus       147 ~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          147 I--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             H--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             H--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            4  68999999999999999999888888877777666 6788999999888764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.74  E-value=6.8e-18  Score=135.61  Aligned_cols=119  Identities=12%  Similarity=0.114  Sum_probs=105.1

Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q psy16214        170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQ  249 (470)
Q Consensus       170 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (470)
                      .+-..+++++.++|+++.+++.+|.++...|++++|+..|++++.++|+++.++..+            |.++...|+++
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l------------g~~~~~~g~~~   87 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL------------AAIYQIKEQFQ   87 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHH
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHccHH
Confidence            344567788888999999999999999999999999999999999999999998888            99999999999


Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy16214        250 EAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL  304 (470)
Q Consensus       250 ~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (470)
                      +|+..|++++.++|+++    .+++++|.++..+|++++|+..|++++++.|+.+
T Consensus        88 ~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           88 QAADLYAVAFALGKNDY----TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999854    5699999999999999999999999999998864

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.74  E-value=3.8e-17  Score=162.41  Aligned_cols=164  Identities=16%  Similarity=0.099  Sum_probs=136.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214        132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL  211 (470)
Q Consensus       132 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (470)
                      |++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+++
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc---CCHHH
Q psy16214        212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM---GKYNE  288 (470)
Q Consensus       212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~---g~~~~  288 (470)
                      +++.+|++..++..+            |.++...|++++|+..|+++++.+|++    ..++.++|.++..+   |++++
T Consensus        83 al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~g~~~~  146 (568)
T 2vsy_A           83 ASDAAPEHPGIALWL------------GHALEDAGQAEAAAAAYTRAHQLLPEE----PYITAQLLNWRRRLCDWRALDV  146 (568)
T ss_dssp             HHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHhcCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhhccccHHH
Confidence            999999998888887            999999999999999999999999984    56799999999999   99999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHH
Q psy16214        289 AIADCTLALEKDPNYLKALSRRC  311 (470)
Q Consensus       289 A~~~~~~al~~~p~~~~~~~~la  311 (470)
                      |+..++++++.+|.+...+..++
T Consensus       147 A~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          147 LSAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHHhcCCcccChHHHhC
Confidence            99999999999999877777666

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.73  E-value=6.3e-16  Score=132.67  Aligned_cols=185  Identities=8%  Similarity=-0.090  Sum_probs=160.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC----ChHHHHHHHHH
Q psy16214        136 TAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDD----KMDLAVNHFQL  211 (470)
Q Consensus       136 ~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~  211 (470)
                      +|+.+|+++.+.  .++.++..+|.++...+++++|+.+|+++++.  .++.+++.+|.+|.. +    ++++|+.+|++
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            467778888775  78999999999999999999999999999875  689999999999998 7    89999999999


Q ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH----c
Q psy16214        212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK----M  283 (470)
Q Consensus       212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~----~  283 (470)
                      +.+  +.++.+...+            |.++..    .+++++|+.+|+++++..|.+.  .+.+++++|.+|..    .
T Consensus        79 A~~--~g~~~a~~~L------------g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~--~~~a~~~Lg~~y~~g~g~~  142 (212)
T 3rjv_A           79 AVE--AGSKSGEIVL------------ARVLVNRQAGATDVAHAITLLQDAARDSESDA--AVDAQMLLGLIYASGVHGP  142 (212)
T ss_dssp             HHH--TTCHHHHHHH------------HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHH--HHHHHHHHHHHHHHTSSSS
T ss_pred             HHH--CCCHHHHHHH------------HHHHHcCCCCccCHHHHHHHHHHHHHcCCCcc--hHHHHHHHHHHHHcCCCCC
Confidence            965  5677787777            999988    8999999999999999887311  36789999999999    8


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-C-----CHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214        284 GKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL-G-----QYKECVIDAEKIYKMDNSRENHNFL  343 (470)
Q Consensus       284 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~a~~~~p~~~~~~~l  343 (470)
                      +++++|+.+|+++++. |.++.+++.+|.+|... |     ++++|+.+|+++.+... .+....|
T Consensus       143 ~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~-~~A~~~l  206 (212)
T 3rjv_A          143 EDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF-DTGCEEF  206 (212)
T ss_dssp             CCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred             CCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Confidence            9999999999999998 77788999999999865 3     89999999999999865 3333333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.73  E-value=3.7e-17  Score=131.55  Aligned_cols=130  Identities=13%  Similarity=0.184  Sum_probs=116.9

Q ss_pred             HHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCC
Q psy16214        206 VNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGK  285 (470)
Q Consensus       206 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~  285 (470)
                      -..|++++.++|++...+..+            |.+++..|++++|+..|++++..+|.+    +.+|.++|.++..+|+
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~------------g~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~   70 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSL------------AFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMGQ   70 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHcCCHhhHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCccc----HHHHHHHHHHHHHHhh
Confidence            346888999999998888887            999999999999999999999999994    5679999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214        286 YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK  351 (470)
Q Consensus       286 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~  351 (470)
                      +++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++++++.|+ ++......++...++
T Consensus        71 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           71 YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997 555555555555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.3e-16  Score=124.69  Aligned_cols=114  Identities=28%  Similarity=0.402  Sum_probs=108.9

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .+++.++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcC------CCChHHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELD------PDNPAIAQESKAL  115 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~  115 (470)
                      +..+|++++|+..|+++++++      |++..++..+..+
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~  121 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  121 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence            999999999999999999999      8888887766665

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.72  E-value=9.7e-19  Score=161.40  Aligned_cols=183  Identities=14%  Similarity=0.122  Sum_probs=154.9

Q ss_pred             CHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH
Q psy16214        133 DYRTAMFYLDR----AMDQGVASKTYKLMKAECLA------------HLNRLQEAQEIANSILATDKQNPDAVFVRGLCL  196 (470)
Q Consensus       133 ~~~~A~~~~~~----~l~~~p~~~~~~~~~a~~~~------------~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~  196 (470)
                      .+++|+..+..    ++.+.|..  ++..+|....            .++++++|+..++.++...|..+.++..+|.++
T Consensus        80 ~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~  157 (336)
T 1p5q_A           80 GLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVY  157 (336)
T ss_dssp             HHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence            45566666666    66667765  3333333322            456777888888888888999999999999999


Q ss_pred             hccCChHHHHHHHHHHHhhCCChH---------------HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy16214        197 YYDDKMDLAVNHFQLLLKLAPDHA---------------KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI  261 (470)
Q Consensus       197 ~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  261 (470)
                      +..|++++|+..|++++.+.|++.               .++..+            |.++...|++++|+.+|++++.+
T Consensus       158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl------------a~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL------------AMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999883               444444            99999999999999999999999


Q ss_pred             cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhc
Q psy16214        262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKEC-VIDAEKIYKM  333 (470)
Q Consensus       262 ~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~  333 (470)
                      +|+    ...+++++|.++..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus       226 ~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          226 DSN----NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             CTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999    5677999999999999999999999999999999999999999999999999999 5577777754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.71  E-value=8.4e-19  Score=161.81  Aligned_cols=196  Identities=10%  Similarity=0.053  Sum_probs=157.5

Q ss_pred             cCCHHHHHHHHHH----HhhcCCchhHHHHHHHHHHH------------HcCChHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16214         17 LKQYSKALKCYSE----AISVCPNVAAYYGNRAACYM------------MLGMYTYALDDAKLAVSLDPRFSKGLIRQIK   80 (470)
Q Consensus        17 ~g~~~~A~~~~~~----al~~~p~~~~~~~~~a~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~   80 (470)
                      .+.+++|+..+..    ++.+.|..  +|..+|....            .++++++|+..+++++..+|..+.++..+|.
T Consensus        78 ~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~  155 (336)
T 1p5q_A           78 PYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGT  155 (336)
T ss_dssp             CHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHH
Confidence            4578899999999    88888876  5556665543            5678889999999999999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy16214         81 CNIALGDAPTARSNLKALQELDPDNPAI---AQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLM  157 (470)
Q Consensus        81 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~  157 (470)
                      ++...|++++|+..|++++.+.|++...   ......-.........+..++..|++++|+..+++++..+|++..+++.
T Consensus       156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~  235 (336)
T 1p5q_A          156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR  235 (336)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            9999999999999999999999998310   0000000001112444555788899999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHH-HHHHHHHHh
Q psy16214        158 KAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLA-VNHFQLLLK  214 (470)
Q Consensus       158 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~~l~  214 (470)
                      +|.++...|++++|+..|+++++++|++..++..++.++...|++++| ...|++++.
T Consensus       236 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          236 RGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888 446666654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.71  E-value=4.6e-17  Score=128.86  Aligned_cols=113  Identities=16%  Similarity=0.102  Sum_probs=104.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc-------hh-----HHHHHHHHHHHHcCChHHHHHHHHHHHhc---
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN-------VA-----AYYGNRAACYMMLGMYTYALDDAKLAVSL---   67 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~~a~~~~~~g~~~~A~~~~~~al~~---   67 (470)
                      .+..++.+|+.++..|+|++|+..|+++|+++|+       +.     .+|.++|.++..+|++++|+..++++|++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4678999999999999999999999999999998       33     39999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         68 ----DPRFSKGL----IRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        68 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                          +|++..+|    +++|.++..+|++++|+.+|+++++++|++..+...+..+
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                99999999    9999999999999999999999999999988766555554

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.71  E-value=5.3e-18  Score=125.25  Aligned_cols=69  Identities=46%  Similarity=0.784  Sum_probs=62.4

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI  429 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~  429 (470)
                      .++|++||+...++.++|+++||+++++||||++...     ..++++|+.|++||++|+||.+|..||.....
T Consensus         3 ~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (103)
T 1bq0_A            3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGD-----KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (103)
T ss_dssp             CCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTT-----CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred             CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence            5799999999999999999999999999999998752     24678899999999999999999999996654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.70  E-value=2.5e-15  Score=133.18  Aligned_cols=251  Identities=14%  Similarity=0.079  Sum_probs=182.1

Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH
Q psy16214         47 CYMMLGMYTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGA  125 (470)
Q Consensus        47 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a  125 (470)
                      -.+-.|+|..++....   ++.|.+ ....+.+.++|+.+|++...       .. .+....+...++.           
T Consensus        22 n~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~-------~~-~~~~~~a~~~la~-----------   79 (310)
T 3mv2_B           22 QNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ-------DP-TSKLGKVLDLYVQ-----------   79 (310)
T ss_dssp             HHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC-------CS-SSTTHHHHHHHHH-----------
T ss_pred             HHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC-------CC-CCHHHHHHHHHHH-----------
Confidence            3455677777776432   333333 34555566777777776631       11 1111112111111           


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC--CChHHHHHHHHHHhccCChH
Q psy16214        126 SKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK--QNPDAVFVRGLCLYYDDKMD  203 (470)
Q Consensus       126 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~  203 (470)
                        ++. +.   |+..+++.+...+.....+..+|.++...|++++|++.+.+.+..+|  .+.+++..++.++..+|+.+
T Consensus        80 --~~~-~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d  153 (310)
T 3mv2_B           80 --FLD-TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVS  153 (310)
T ss_dssp             --HHT-TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHH
T ss_pred             --Hhc-cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHH
Confidence              111 22   67777777777666666778899999999999999999999999887  88999999999999999999


Q ss_pred             HHHHHHHHHHhhCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcccCccchHHHHHHH
Q psy16214        204 LAVNHFQLLLKLAPD-----HAKAKETYKRAKLLKAKKEEGNEKFVAG--KNQEAFDIYTEALKIDARNININSKLLHNR  276 (470)
Q Consensus       204 ~A~~~~~~~l~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~l  276 (470)
                      .|.+.+++..+.+|+     +... ..+          ..+.+.+..|  ++.+|...|+++....|+..  ...++++ 
T Consensus       154 ~A~k~l~~~~~~~~d~~~~~d~~l-~~L----------aea~v~l~~g~~~~q~A~~~f~El~~~~p~~~--~~~lLln-  219 (310)
T 3mv2_B          154 TASTIFDNYTNAIEDTVSGDNEMI-LNL----------AESYIKFATNKETATSNFYYYEELSQTFPTWK--TQLGLLN-  219 (310)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHH-HHH----------HHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH--HHHHHHH-
T ss_pred             HHHHHHHHHHhcCccccccchHHH-HHH----------HHHHHHHHhCCccHHHHHHHHHHHHHhCCCcc--cHHHHHH-
Confidence            999999999999983     3222 222          1154455555  99999999999988877511  1223444 


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHH
Q psy16214        277 ATVLFKMGKYNEAIADCTLALEK----------DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFL  343 (470)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l  343 (470)
                        ++..+|++++|...++.+++.          +|+++.++.+++.+...+|+  +|.++++++.+.+|+.....-+
T Consensus       220 --~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          220 --LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             --HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             --HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence              899999999999999988876          58899999999999999998  9999999999999996554444

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.70  E-value=2.6e-16  Score=122.98  Aligned_cols=106  Identities=25%  Similarity=0.293  Sum_probs=98.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-------SKGL   75 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~   75 (470)
                      .+.++.++|+.++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..++++++++|++       ..++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999998865       3588


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214         76 IRQIKCNIALGDAPTARSNLKALQELDPDNPAIA  109 (470)
Q Consensus        76 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  109 (470)
                      ..+|.++..+|++++|++.|++++...|+ ++..
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~  119 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV  119 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence            99999999999999999999999998885 4443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.70  E-value=1.4e-16  Score=143.06  Aligned_cols=198  Identities=10%  Similarity=0.014  Sum_probs=157.9

Q ss_pred             CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214         35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA  114 (470)
Q Consensus        35 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  114 (470)
                      |.++..+..+|.+++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..++++++++|++..++..++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999998866666


Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHH
Q psy16214        115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL  194 (470)
Q Consensus       115 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~  194 (470)
                      +            +...|++++|+..+++++..+|++...+........   ...++...........|.++.+...++.
T Consensus        81 ~------------~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~  145 (281)
T 2c2l_A           81 C------------QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTR  145 (281)
T ss_dssp             H------------HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred             H------------HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            5            777899999999999999998866322211111111   1222233333444567788888877777


Q ss_pred             HHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q psy16214        195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVA-GKNQEAFDIYTEALKI  261 (470)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~  261 (470)
                      ++  .|++++|+..++++++.+|++......+            +..+... +.+++|...|.++.+.
T Consensus       146 l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          146 LI--AAERERELEECQRNHEGHEDDGHIRAQQ------------ACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HH--HHHHHHHHTTTSGGGTTTSCHHHHTHHH------------HHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HH--HHHHHHHHHHHHhhhccccchhhhhhHH------------HHHHHHHHHHHHHHHHHHHhhhcc
Confidence            65  7999999999999999999987666555            4444444 6788899999888754

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.70  E-value=6.1e-18  Score=121.93  Aligned_cols=67  Identities=43%  Similarity=0.709  Sum_probs=60.2

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|++||+...++..+|+++|+++++++|||+++.+        .++|+.|++||++|+||.+|..||....
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   72 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD--------TEKFKEISEAFEILNDPQKREIYDQYGL   72 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC--------HHHHHHHHHHHHHHTSHHHHHHHHHHCH
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------HHHHHHHHHHHHHHCCHHHHHHHHHHCH
Confidence            346899999999999999999999999999999998752        3489999999999999999999997543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.69  E-value=1.1e-16  Score=128.81  Aligned_cols=116  Identities=14%  Similarity=0.004  Sum_probs=79.5

Q ss_pred             HHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy16214         25 KCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD  104 (470)
Q Consensus        25 ~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  104 (470)
                      ..|++++..+|+++.+++.+|.+++..|++++|+..|++++.++|+++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            45777777777777778888888888888888888888888888888888888888888888888877777777777777


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214        105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK  152 (470)
Q Consensus       105 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  152 (470)
                      ++.++..++.+            +...|++++|+..++++++..|+++
T Consensus        88 ~~~~~~~lg~~------------~~~~g~~~~A~~~~~~al~~~p~~~  123 (148)
T 2vgx_A           88 EPRFPFHAAEC------------LLQXGELAEAESGLFLAQELIANXP  123 (148)
T ss_dssp             CTHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred             CchHHHHHHHH------------HHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            66654333333            3344444444444444444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.69  E-value=5.4e-16  Score=123.95  Aligned_cols=116  Identities=22%  Similarity=0.297  Sum_probs=108.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      +++.++.+|..++..|+|++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.++
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETM  118 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  118 (470)
                      ..+|++++|+..|+++++++|+++........+...
T Consensus        97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            999999999999999999999998876555554433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1.5e-16  Score=156.23  Aligned_cols=195  Identities=14%  Similarity=0.100  Sum_probs=175.3

Q ss_pred             HHHhcCCH-HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214         13 TQYKLKQY-SKALKCYSEAISVCPNVAAYYGNRAACYMMLGM----------YTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus        13 ~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .....|++ ++|+..+++++..+|++..+|+.++.++..+++          +++++..++++++.+|++..+|..++.+
T Consensus        37 ~~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~  116 (567)
T 1dce_A           37 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  116 (567)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34455655 578999999999999999999999999999998          9999999999999999999999999999


Q ss_pred             HHHcC--ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214         82 NIALG--DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN-DYRTAMFYLDRAMDQGVASKTYKLMK  158 (470)
Q Consensus        82 ~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~~  158 (470)
                      +..++  ++++|++.+.++++++|.+..+|...+.+.            ...+ .+++++++++++++.+|.+..+|..+
T Consensus       117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l------------~~l~~~~~~el~~~~~~I~~~p~n~saW~~r  184 (567)
T 1dce_A          117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA------------AQAAVAPAEELAFTDSLITRNFSNYSSWHYR  184 (567)
T ss_dssp             HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------------HHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred             HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHH------------HHcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence            99999  679999999999999999999998877763            3345 78999999999999999999999999


Q ss_pred             HHHHHHc--------------CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHH------------HHHHHHHH
Q psy16214        159 AECLAHL--------------NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDL------------AVNHFQLL  212 (470)
Q Consensus       159 a~~~~~~--------------~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~~  212 (470)
                      +.++...              +.++++++++.+++..+|++..+|+.++.++...+.+++            |+..|.++
T Consensus       185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~  264 (567)
T 1dce_A          185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRP  264 (567)
T ss_dssp             HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEE
T ss_pred             HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccc
Confidence            9999885              668999999999999999999999999999999988766            56667777


Q ss_pred             HhhCCCh
Q psy16214        213 LKLAPDH  219 (470)
Q Consensus       213 l~~~p~~  219 (470)
                      +.++|..
T Consensus       265 i~~~~~~  271 (567)
T 1dce_A          265 LTVGSRM  271 (567)
T ss_dssp             ECTTBTT
T ss_pred             eeccccc
Confidence            7777763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.68  E-value=2.5e-16  Score=125.97  Aligned_cols=129  Identities=16%  Similarity=0.216  Sum_probs=112.7

Q ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH
Q psy16214        207 NHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY  286 (470)
Q Consensus       207 ~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~  286 (470)
                      ..|++++..+|++...+..+            |..++..|++++|+..|++++..+|++    +.+|..+|.++..+|++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~------------a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~   68 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYAL------------GFNQYQAGKWDDAQKIFQALCMLDHYD----ARYFLGLGACRQSLGLY   68 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCH
T ss_pred             hhHHHHHcCCHHHHHHHHHH------------HHHHHHHccHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHHhhH
Confidence            46778888899888888777            999999999999999999999999994    56799999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214        287 NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK  351 (470)
Q Consensus       287 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~  351 (470)
                      ++|+..|++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+ ++......++...++
T Consensus        69 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           69 EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986 555555555555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.68  E-value=5e-16  Score=127.27  Aligned_cols=116  Identities=25%  Similarity=0.374  Sum_probs=107.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhc------------------CCchhHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISV------------------CPNVAAYYGNRAACYMMLGMYTYALDDAKLA   64 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a   64 (470)
                      .+..+..+|..++..|+|++|+..|++++..                  +|.++.++.++|.|+..+|++++|+..++++
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            4678999999999999999999999999999                  7777899999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHH
Q psy16214         65 VSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETM  118 (470)
Q Consensus        65 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~l~~~~~~  118 (470)
                      ++++|+++.+++.+|.++..+|++++|+..|++++.++|+++ .+...+..+...
T Consensus        90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998 666666666443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.68  E-value=1e-15  Score=119.53  Aligned_cols=109  Identities=24%  Similarity=0.292  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q psy16214        234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-------LKA  306 (470)
Q Consensus       234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~  306 (470)
                      .+.+.|..++..|++++|+.+|+++++++|+    .+.+|.++|.++..+|++++|+..|+++++++|++       ..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~----~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS----NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            3445599999999999999999999999999    45679999999999999999999999999998765       468


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy16214        307 LSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEA  346 (470)
Q Consensus       307 ~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~  346 (470)
                      +.++|.++..+|++++|+.+|++++++.|++++...|..+
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~l  125 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHHHh
Confidence            9999999999999999999999999999998877766554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=2e-15  Score=129.47  Aligned_cols=177  Identities=15%  Similarity=0.039  Sum_probs=155.0

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----ChHHHHHHHH
Q psy16214         21 SKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG----DAPTARSNLK   96 (470)
Q Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~   96 (470)
                      .+|+..|+++.+.  .++.+++.+|.+|...+++++|+..|+++++.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            4578899999876  67999999999999999999999999999875  589999999999998 7    8999999999


Q ss_pred             HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cC
Q psy16214         97 ALQELDPDNPAIAQESKALETMAKNFEGASKAFE----ANDYRTAMFYLDRAMDQGV--ASKTYKLMKAECLAH----LN  166 (470)
Q Consensus        97 ~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~----~~  166 (470)
                      ++.+  +.++.++..++.+            +..    .+++++|+.+++++++..|  ..+.++..+|.+|..    .+
T Consensus        78 ~A~~--~g~~~a~~~Lg~~------------y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~  143 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARV------------LVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPE  143 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHH------------HTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHH--CCCHHHHHHHHHH------------HHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCC
Confidence            9965  5788888777766            444    6899999999999999888  358999999999999    89


Q ss_pred             CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhcc-C-----ChHHHHHHHHHHHhhCC
Q psy16214        167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYD-D-----KMDLAVNHFQLLLKLAP  217 (470)
Q Consensus       167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~~l~~~p  217 (470)
                      ++++|+.+|++++.. |.++.+++.+|.+|... |     ++++|+.+|+++.+...
T Consensus       144 d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          144 DDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             CHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999998 77888999999999754 3     89999999999998754

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.68  E-value=2.6e-15  Score=135.94  Aligned_cols=178  Identities=15%  Similarity=0.117  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH
Q psy16214        152 KTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET  225 (470)
Q Consensus       152 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~  225 (470)
                      ...+...+..+...|++++|+..+.++++..+...      ..++.+|.++...|++++|+..+++++...+.....+. 
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-  153 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ-  153 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH-
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH-
Confidence            34556678888999999999999999998877654      34667888999999999999999999987654321110 


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        226 YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK---IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                           ....+...|.++...|++++|+.+|++++.   ..|++......++.++|.+|..+|++++|+.++++++.+.++
T Consensus       154 -----~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          154 -----NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence                 011122339999999999999999999994   445544333478999999999999999999999999987543


Q ss_pred             ------CHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhcCC
Q psy16214        303 ------YLKALSRRCKCFHALGQYKEC-VIDAEKIYKMDN  335 (470)
Q Consensus       303 ------~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~~~p  335 (470)
                            ...+++++|.++..+|++++| ..++++++.+..
T Consensus       229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~  268 (293)
T 2qfc_A          229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD  268 (293)
T ss_dssp             TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence                  278999999999999999999 888999997653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.68  E-value=3.4e-15  Score=117.68  Aligned_cols=134  Identities=25%  Similarity=0.334  Sum_probs=124.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      +.++.+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                      .|++++|+..+++++...|.+..++..++.+            +...|++++|+..+.+++..+|.
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~------------~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNA------------YYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHH------------HHHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999999999998877655554            67788899999999998888875

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.68  E-value=2.7e-15  Score=118.20  Aligned_cols=134  Identities=29%  Similarity=0.429  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc
Q psy16214        187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI  266 (470)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  266 (470)
                      .+++.+|.++...|++++|+..+++++...|++...+..+            |.++...|++++|+..+++++...|.+ 
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~~~~-   68 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPRS-   68 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCTTC-
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHH------------HHHHHHhcCHHHHHHHHHHHHHHCCCc-
Confidence            3566667777777777777777777777777666665555            777777777777777777777776663 


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        267 NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                         ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++++|.
T Consensus        69 ---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           69 ---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             ---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             ---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence               4457777777777777777777777777777777777777777777777777777777777777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.7e-16  Score=155.69  Aligned_cols=189  Identities=11%  Similarity=0.003  Sum_probs=174.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccC-
Q psy16214        132 NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR----------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDD-  200 (470)
Q Consensus       132 ~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-  200 (470)
                      ...++|+..+++++..+|++..+|..++.++...++          +++++..+++++..+|++..+|..++.++...+ 
T Consensus        43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence            345678999999999999999999999999999998          999999999999999999999999999999999 


Q ss_pred             -ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcccCccchHHHHHHHHH
Q psy16214        201 -KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG-KNQEAFDIYTEALKIDARNININSKLLHNRAT  278 (470)
Q Consensus       201 -~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~  278 (470)
                       ++++++..+.++++.+|.+..+|...            +.+....+ .+++++++++++++.+|.    +..+|..++.
T Consensus       123 ~~~~~el~~~~k~l~~d~~N~~aW~~R------------~~~l~~l~~~~~~el~~~~~~I~~~p~----n~saW~~r~~  186 (567)
T 1dce_A          123 PNWARELELCARFLEADERNFHCWDYR------------RFVAAQAAVAPAEELAFTDSLITRNFS----NYSSWHYRSC  186 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTCCCHHHHHHHHHTTTTTTCC----CHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhccccccHHHHH------------HHHHHHcCCChHHHHHHHHHHHHHCCC----CccHHHHHHH
Confidence             66999999999999999999999988            88899999 999999999999999999    4677999999


Q ss_pred             HHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHh
Q psy16214        279 VLFKM--------------GKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE------------CVIDAEKIYK  332 (470)
Q Consensus       279 ~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~------------A~~~~~~a~~  332 (470)
                      ++..+              +.++++++++.+++.++|++..+|+.++.++...+++++            |+.+|.+++.
T Consensus       187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~  266 (567)
T 1dce_A          187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLT  266 (567)
T ss_dssp             HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEEC
T ss_pred             HHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEecccee
Confidence            99885              568999999999999999999999999999999998776            6667888888


Q ss_pred             cCCC
Q psy16214        333 MDNS  336 (470)
Q Consensus       333 ~~p~  336 (470)
                      ++|.
T Consensus       267 ~~~~  270 (567)
T 1dce_A          267 VGSR  270 (567)
T ss_dssp             TTBT
T ss_pred             cccc
Confidence            7775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.68  E-value=1.2e-14  Score=128.82  Aligned_cols=259  Identities=11%  Similarity=0.023  Sum_probs=193.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      ++.++.. ...|..|+|..++....+   ..|.+ ....+.+..+|+.+|++....        ..+....+...++..+
T Consensus        14 ~~~lf~i-kn~fy~G~yq~~i~e~~~---~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~   81 (310)
T 3mv2_B           14 PMDYFNI-KQNYYTGNFVQCLQEIEK---FSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFL   81 (310)
T ss_dssp             -CCTHHH-HHHHTTTCHHHHTHHHHT---SSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHH
T ss_pred             cHHHHHH-HHHHHhhHHHHHHHHHHh---cCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHh
Confidence            4445544 567889999999985443   33433 345667788899999987521        1222333444555544


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV--ASKTYKLMKAE  160 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~  160 (470)
                      .  ++   |+..+++.+...+.+......++.+            +...|++++|+.++.+.+..+|  .+.+++...+.
T Consensus        82 ~--~~---a~~~l~~l~~~~~~~~~~~~~la~i------------~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vq  144 (310)
T 3mv2_B           82 D--TK---NIEELENLLKDKQNSPYELYLLATA------------QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIE  144 (310)
T ss_dssp             T--TT---CCHHHHHTTTTSCCCHHHHHHHHHH------------HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred             c--cc---HHHHHHHHHhcCCCCcHHHHHHHHH------------HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHH
Confidence            2  22   8999999988766666655555555            6667999999999999999987  88899999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcCCC------ChHHHHHHHHHHhccC--ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214        161 CLAHLNRLQEAQEIANSILATDKQ------NPDAVFVRGLCLYYDD--KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL  232 (470)
Q Consensus       161 ~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  232 (470)
                      ++...|+.+.|.+.++++.+.+|+      ...+...-+.+.+..|  ++.+|...|+++....|+.......+      
T Consensus       145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLl------  218 (310)
T 3mv2_B          145 VALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL------  218 (310)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH------
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHH------
Confidence            999999999999999999999883      2333333354466666  99999999999999888733333333      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc-------CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR-------NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK  305 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  305 (470)
                            . ++..+|++++|...++.+++..|+       ++. ++.++.+++.+...+|+  +|.++++++.+.+|+++.
T Consensus       219 ------n-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~-~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~  288 (310)
T 3mv2_B          219 ------N-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLY-KPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF  288 (310)
T ss_dssp             ------H-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSS-HHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred             ------H-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCC-CHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence                  3 789999999999999988877432       111 56779899999999998  899999999999999987


Q ss_pred             HH
Q psy16214        306 AL  307 (470)
Q Consensus       306 ~~  307 (470)
                      +.
T Consensus       289 i~  290 (310)
T 3mv2_B          289 IK  290 (310)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.68  E-value=1.4e-15  Score=124.95  Aligned_cols=113  Identities=30%  Similarity=0.412  Sum_probs=106.9

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      ..++.++.+|..++..|+|++|+.+|++++..+|+++.+++++|.++..+|++++|+..|+++++++|+++.+++.+|.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKA  114 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  114 (470)
                      +..+|++++|+.+|+++++++|++...+...+.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            999999999999999999999999886544443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.67  E-value=3.9e-16  Score=123.52  Aligned_cols=118  Identities=18%  Similarity=0.145  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy16214        230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN--------INSKLLHNRATVLFKMGKYNEAIADCTLALEK--  299 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--  299 (470)
                      .....+...|..++..|++++|+..|+++++++|+++.        ..+.+|.++|.++..+|++++|+..|+++|++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            34455566799999999999999999999999998321        13458999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q psy16214        300 -----DPNYLKAL----SRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAK  347 (470)
Q Consensus       300 -----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~  347 (470)
                           +|+++.+|    +++|.++..+|++++|+.+|+++++++|+ ..+...+..++
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence                 99999999    99999999999999999999999999996 33333333333

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.65  E-value=8e-15  Score=125.91  Aligned_cols=162  Identities=14%  Similarity=0.011  Sum_probs=128.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..++.+|..++..|+|++|+..|++++  +| ++.+++++|.++...|++++|+..+++++.++|+++.++..+|.++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            35578999999999999999999999996  33 6789999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      ..+|++++|+..|++++++.|.+....                  +            ....+...|....++..+|.++
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~------------------~------------~~~~~~~~~~~~~~~~~l~~~~  131 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLID------------------Y------------KILGLQFKLFACEVLYNIAFMY  131 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEE------------------C------------GGGTBCCEEEHHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHH------------------H------------HHhccccCccchHHHHHHHHHH
Confidence            999999999999999999999876221                  0            0011123344455666677777


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHh
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLY  197 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~  197 (470)
                      ...|++++|+..+++++...|++.......+....
T Consensus       132 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  166 (213)
T 1hh8_A          132 AKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  166 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence            77777777777777777777765554444444433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.65  E-value=1.4e-14  Score=131.05  Aligned_cols=173  Identities=16%  Similarity=0.136  Sum_probs=139.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH------HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILATDKQNPD------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRA  229 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~  229 (470)
                      ...+..+...|++++|+..+++++...+..+.      .+..+|.++...+++++|+.++++++...+.......     
T Consensus        79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~-----  153 (293)
T 3u3w_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ-----  153 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH-----
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH-----
Confidence            34577788999999999999999998777655      2335888899999999999999999996554333110     


Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc---cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy16214        230 KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA---RNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---  303 (470)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---  303 (470)
                       .+..+...|.++...|++++|+.+|++++....   .+......++.++|.+|..+|++++|+.++++++++.+..   
T Consensus       154 -~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          154 -NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence             111123339999999999999999999996432   3333456789999999999999999999999999886443   


Q ss_pred             ---HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcC
Q psy16214        304 ---LKALSRRCKCFHALG-QYKECVIDAEKIYKMD  334 (470)
Q Consensus       304 ---~~~~~~la~~~~~~g-~~~~A~~~~~~a~~~~  334 (470)
                         +.++..+|.++..+| .+++|+.+|++++.+.
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence               889999999999999 5799999999999875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=5.5e-15  Score=115.38  Aligned_cols=110  Identities=32%  Similarity=0.469  Sum_probs=99.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF  314 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  314 (470)
                      +...|..++..|++++|+..|++++..+|+    .+.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE----DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            344599999999999999999999999999    4577999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcC------CC-hhHHHHHHHHHH
Q psy16214        315 HALGQYKECVIDAEKIYKMD------NS-RENHNFLEEAKR  348 (470)
Q Consensus       315 ~~~g~~~~A~~~~~~a~~~~------p~-~~~~~~l~~~~~  348 (470)
                      ..+|++++|+..|+++++++      |+ ..+...+..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            99999999999999999999      76 555666655543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.64  E-value=1.4e-15  Score=117.72  Aligned_cols=103  Identities=17%  Similarity=0.081  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      ..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+++.+|.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCChH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPA  107 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~  107 (470)
                      +|++++|+..++++++++|++..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999998653

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.9e-16  Score=114.39  Aligned_cols=71  Identities=55%  Similarity=0.809  Sum_probs=63.9

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|++||+...++..+|+++|++++++||||++...    .+.++++|+.|++||++|+||.+|..||....
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   77 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDN----KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC   77 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSC----SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCcc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence            457899999999999999999999999999999998763    34678899999999999999999999998543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.64  E-value=5.9e-15  Score=120.84  Aligned_cols=118  Identities=25%  Similarity=0.282  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------------cccCccchHHHHHHHHHHHHHcCCHHHHHHH
Q psy16214        231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKI------------------DARNININSKLLHNRATVLFKMGKYNEAIAD  292 (470)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~  292 (470)
                      ....+...|..++..|++++|+..|++++..                  +|.    ...++.++|.++..+|++++|+..
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~nla~~~~~~~~~~~A~~~   85 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK----NIPLYANMSQCYLNIGDLHEAEET   85 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHT----HHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH----HHHHHHHHHHHHHhcCcHHHHHHH
Confidence            3445566699999999999999999999998                  444    567899999999999999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-h-hHHHHHHHHHHHhhc
Q psy16214        293 CTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-R-ENHNFLEEAKRLLKR  352 (470)
Q Consensus       293 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~-~~~~~l~~~~~~~~~  352 (470)
                      +++++.++|+++.+++.+|.++..+|++++|+.+|+++++++|+ . .+...|..+...++.
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 3 567777777666653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.64  E-value=2.4e-14  Score=122.92  Aligned_cols=145  Identities=16%  Similarity=0.022  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214        155 KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA  234 (470)
Q Consensus       155 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  234 (470)
                      ++.+|.++...|++++|+..+++++  .| ++.+++.+|.++...|++++|+..|++++..+|++..++..+        
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l--------   77 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR--------   77 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH--------
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH--------
Confidence            4455555555555555555555553  12 445555555555555555555555555555555555444444        


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF  314 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  314 (470)
                          |.++...|++++|+..|++++...|.+....                      +....+...|..+.+++.+|.++
T Consensus        78 ----g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~l~~~~  131 (213)
T 1hh8_A           78 ----GMLYYQTEKYDLAIKDLKEALIQLRGNQLID----------------------YKILGLQFKLFACEVLYNIAFMY  131 (213)
T ss_dssp             ----HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE----------------------CGGGTBCCEEEHHHHHHHHHHHH
T ss_pred             ----HHHHHHcccHHHHHHHHHHHHHhCCCccHHH----------------------HHHhccccCccchHHHHHHHHHH
Confidence                5555555555555555555555555433110                      00000012222336777777777


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCC
Q psy16214        315 HALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       315 ~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ..+|++++|+..|++++++.|+
T Consensus       132 ~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A          132 AKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHccCHHHHHHHHHHHHHcCcc
Confidence            7777777777777777777765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.64  E-value=5.3e-15  Score=123.07  Aligned_cols=126  Identities=17%  Similarity=0.209  Sum_probs=115.0

Q ss_pred             HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214        196 LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN  275 (470)
Q Consensus       196 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  275 (470)
                      +...|++++|+..+++++..+|++..++..+            |.++...|++++|+.+|++++..+|.+    ..++..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~   83 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALL------------GEYYLWQNDYSNSLLAYRQALQLRGEN----AELYAA   83 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHCSC----HHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHH
Confidence            4567899999999999999999999998888            999999999999999999999999984    567999


Q ss_pred             HHHH-HHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214        276 RATV-LFKMGKY--NEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSR  337 (470)
Q Consensus       276 la~~-~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  337 (470)
                      +|.+ +...|++  ++|+..+++++..+|+++.+++.+|.++...|++++|+..|+++++++|+.
T Consensus        84 la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            9999 8899999  999999999999999999999999999999999999999999999999973

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.63  E-value=1.6e-14  Score=118.48  Aligned_cols=134  Identities=31%  Similarity=0.499  Sum_probs=118.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|.++.+++.+|.++
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMD  146 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  146 (470)
                      ..+|++++|+.+++++++++|.+..++..++.+          ..+...|++++|+..+.+...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~----------~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQEC----------NKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------HHHHHHHHHHHHHHcccchHH
Confidence            999999999999999999999998877444433          223345667777777666544

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.63  E-value=2e-17  Score=148.14  Aligned_cols=68  Identities=41%  Similarity=0.646  Sum_probs=0.0

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      ..+++|++||+..+++.++|++|||+++++||||++++      ..++++|++|++||++|+||++|+.||...
T Consensus        26 ~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~------~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   93 (329)
T 3lz8_A           26 ELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE------NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW   93 (329)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC------hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence            44799999999999999999999999999999999865      257889999999999999999999999853

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.63  E-value=8.6e-15  Score=116.04  Aligned_cols=115  Identities=30%  Similarity=0.452  Sum_probs=107.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .++..++.+|..++..|+|++|+.+|++++..+|+++.++..+|.++..+|++++|+..++++++++|+++.+++.+|.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCC-----ChHHHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPD-----NPAIAQESKALE  116 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~l~~~~  116 (470)
                      +..+|++++|+..|++++.+.|+     +..+...+..+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988     666665555553

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.63  E-value=5.6e-16  Score=131.60  Aligned_cols=172  Identities=15%  Similarity=0.106  Sum_probs=102.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHH----HHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE----TYKRAKL  231 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~----~~~~~~~  231 (470)
                      ...+.+....++++++.+.+.......+..+..+..+|.+++..|++++|+..|++++...|.++....    .......
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence            334555666777777777777666666666778889999999999999999999999998887651100    0000001


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214        232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC  311 (470)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  311 (470)
                      ...+...|.++...|++++|+.++++++..+|.    ...+++.+|.++..+|++++|+..|+++++++|++..++..++
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN----NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc----cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            112222377777777777777777777777776    3455777777777777777777777777777777777777777


Q ss_pred             HHHHHhCCHHHHH-HHHHHHH
Q psy16214        312 KCFHALGQYKECV-IDAEKIY  331 (470)
Q Consensus       312 ~~~~~~g~~~~A~-~~~~~a~  331 (470)
                      .++..+++..++. ..+.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          164 LCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            7777777666665 3344443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.63  E-value=1.5e-14  Score=110.95  Aligned_cols=114  Identities=28%  Similarity=0.436  Sum_probs=109.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      ..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      +..+|++++|+..++++++.+|+++.++..++.+
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            9999999999999999999999999988777665

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.62  E-value=4.9e-16  Score=108.22  Aligned_cols=67  Identities=49%  Similarity=0.886  Sum_probs=61.2

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .++|.+||+...++.++|+++|+++++++|||++...      .+++.|+.|++||++|+||.+|..||..++
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~------~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~   69 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP------GAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT------THHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------cHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            4789999999999999999999999999999998752      367889999999999999999999998654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.62  E-value=8.1e-15  Score=115.33  Aligned_cols=117  Identities=31%  Similarity=0.402  Sum_probs=111.2

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      ..+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETM  118 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  118 (470)
                      +..+|++++|+..++++++.+|.+..++..++.++..
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999998888877543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.62  E-value=3.1e-15  Score=124.50  Aligned_cols=129  Identities=13%  Similarity=0.120  Sum_probs=96.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCh--
Q psy16214         12 NTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC-NIALGDA--   88 (470)
Q Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--   88 (470)
                      ..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++..+|.+ +...|++  
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            3456678899999999999999999999999999999999999999999999999999999999999998 7788888  


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASK  152 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~  152 (470)
                      ++|+..+++++..+|+++.++..++.+            ++..|++++|+..+++++...|.+.
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~------------~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASD------------AFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHH------------HHHcccHHHHHHHHHHHHhhCCCCc
Confidence            888888888888888776665444333            4444555555555555555555543

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=3.9e-16  Score=111.51  Aligned_cols=68  Identities=44%  Similarity=0.704  Sum_probs=62.4

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      ...++|++||+...++.++|+++||++++++|||++..      ..++++|+.|++||++|+||.+|..||.-.
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~   72 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS------PDAEAKFREIAEAYETLSDANRRKEYDTLG   72 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence            45789999999999999999999999999999999875      357889999999999999999999999754

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.62  E-value=3.5e-16  Score=113.84  Aligned_cols=75  Identities=31%  Similarity=0.537  Sum_probs=67.3

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC-ccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN-ATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~-~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+|||...++..+|+++|++++++||||++.. .++..+..++++|+.|++||++|+||.+|+.||....
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   89 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRS   89 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence            45789999999999999999999999999999999874 3456667899999999999999999999999998654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.62  E-value=2.5e-14  Score=117.30  Aligned_cols=133  Identities=14%  Similarity=0.140  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214        186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN  265 (470)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  265 (470)
                      +..+..+|.++...|++++|+..|++++..+|++..++..+            |.++...|++++|+..+++++...|. 
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~a~~~~~~-   79 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKK-   79 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCcc-
Confidence            45677888888888888888888888888888887777776            88888888888888888888888887 


Q ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhCCHHHHHHHHHHHHhcC
Q psy16214        266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK--CFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~--~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                         ...++..+|.++..+|++++|+.++++++.++|++..++..++.  .+...|++++|+..+.++..+.
T Consensus        80 ---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A           80 ---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence               45668888999999999999999999999999988888755444  4778889999998888776553

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=8e-16  Score=107.42  Aligned_cols=69  Identities=46%  Similarity=0.819  Sum_probs=62.9

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+||+...++..+|+++|+++++++|||++..      ..+.+.|+.|++||++|+||.+|..||....
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   73 (78)
T 2ctp_A            5 SSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA------PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS   73 (78)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS------HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            45789999999999999999999999999999999875      3567899999999999999999999998654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.62  E-value=1.4e-11  Score=122.54  Aligned_cols=305  Identities=7%  Similarity=-0.096  Sum_probs=232.3

Q ss_pred             CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---hHHHHHHH
Q psy16214         19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD---APTARSNL   95 (470)
Q Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~   95 (470)
                      ...+-+..|++.|..+|.+...|..+.......+.++.+...|++++...|.....|...+..-...++   ++.+..+|
T Consensus        47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf  126 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL  126 (679)
T ss_dssp             CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence            345677889999999999999999999999999999999999999999999999999999999999999   99999999


Q ss_pred             HHHHhcCC--CChHHHHHHHHHHHH---------------HHHHHHHHHHHh----------------------------
Q psy16214         96 KALQELDP--DNPAIAQESKALETM---------------AKNFEGASKAFE----------------------------  130 (470)
Q Consensus        96 ~~~l~~~p--~~~~~~~~l~~~~~~---------------~~~~~~a~~~~~----------------------------  130 (470)
                      ++++...|  .+..+|.........               ...++.|+..+.                            
T Consensus       127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee  206 (679)
T 4e6h_A          127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE  206 (679)
T ss_dssp             HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence            99999884  566677655433211               122333332111                            


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC-H-HHHH----------------------------------------------------
Q psy16214        131 ANDYRTAMFYLDRAMDQGVAS-K-TYKL----------------------------------------------------  156 (470)
Q Consensus       131 ~~~~~~A~~~~~~~l~~~p~~-~-~~~~----------------------------------------------------  156 (470)
                      +++.+.+..+|.+++.+ |.. . .++.                                                    
T Consensus       207 q~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~  285 (679)
T 4e6h_A          207 QQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQ  285 (679)
T ss_dssp             HHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTT
T ss_pred             HhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccccc
Confidence            12345566677777653 321 1 1110                                                    


Q ss_pred             -------------------HHHHHHHHcCC---------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHH-H
Q psy16214        157 -------------------MKAECLAHLNR---------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAV-N  207 (470)
Q Consensus       157 -------------------~~a~~~~~~~~---------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~  207 (470)
                                         ....+-+...+         .......|++++...|.++++|+..+..+...|+.++|+ .
T Consensus       286 ~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~  365 (679)
T 4e6h_A          286 ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITK  365 (679)
T ss_dssp             CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred             chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence                               00000000011         123456799999999999999999999999999999997 9


Q ss_pred             HHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----------ccCc-------cch
Q psy16214        208 HFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID-----------ARNI-------NIN  269 (470)
Q Consensus       208 ~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----------p~~~-------~~~  269 (470)
                      .|++++...|.+...+..+            +......|++++|..+|++++...           |.+.       ...
T Consensus       366 il~rAi~~~P~s~~Lwl~~------------a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~  433 (679)
T 4e6h_A          366 YLKLGQQCIPNSAVLAFSL------------SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL  433 (679)
T ss_dssp             HHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence            9999999999998888777            888889999999999999999753           3210       013


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCC
Q psy16214        270 SKLLHNRATVLFKMGKYNEAIADCTLALEK-DPNYLKALSRRCKCFHALGQ-YKECVIDAEKIYKMDNS  336 (470)
Q Consensus       270 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~p~  336 (470)
                      ..+|...+.+..+.|..+.|...|.+|++. .+....+|...|.+....++ ++.|...|+++++..|+
T Consensus       434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            457888899989999999999999999998 54557788888887777654 89999999999999997

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.62  E-value=5.3e-16  Score=106.67  Aligned_cols=67  Identities=45%  Similarity=0.833  Sum_probs=60.5

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+||+...++..+|+++|+++++++|||++++.        .+.|+.|++||++|+||.+|..||.+++
T Consensus         6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~--------~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDG--------AEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTC--------HHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCH--------HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            346899999999999999999999999999999998752        4679999999999999999999998753

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=5.4e-16  Score=108.68  Aligned_cols=70  Identities=43%  Similarity=0.688  Sum_probs=63.1

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+||+...++..+|+++|+++++++|||++...+     .++++|+.|++||++|+||.+|..||....
T Consensus         5 ~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-----~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   74 (79)
T 2dn9_A            5 SSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDP-----KAKEKFSQLAEAYEVLSDEVKRKQYDAYGS   74 (79)
T ss_dssp             CCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCT-----THHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCH-----HHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence            4568999999999999999999999999999999987532     467899999999999999999999998654

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=4.2e-16  Score=113.99  Aligned_cols=70  Identities=34%  Similarity=0.624  Sum_probs=63.2

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+|||...++..+|+++||+++++||||++...     ..++++|+.|++||++|+|+.+|..||....
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~-----~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~   84 (99)
T 2yua_A           15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGS-----AEAAERFTRISQAYVVLGSATLRRKYDRGLL   84 (99)
T ss_dssp             CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSC-----SHHHHHHHHHHHHHHHTTSHHHHHHHHHTCC
T ss_pred             CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence            457899999999999999999999999999999998753     2477899999999999999999999998644

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.61  E-value=1.9e-13  Score=123.65  Aligned_cols=170  Identities=9%  Similarity=0.065  Sum_probs=138.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC------hHHH
Q psy16214        122 FEGASKAFEANDYRTAMFYLDRAMDQGVASK------TYKLMKAECLAHLNRLQEAQEIANSILATDKQN------PDAV  189 (470)
Q Consensus       122 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~  189 (470)
                      ...+..++..|++++|+..+.+++...+...      ..+..+|.++...|++++|+..+++++...+..      ..++
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            4566678899999999999999999887654      345668888999999999999999999876544      4689


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHH---hhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--
Q psy16214        190 FVRGLCLYYDDKMDLAVNHFQLLL---KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--  264 (470)
Q Consensus       190 ~~la~~~~~~g~~~~A~~~~~~~l---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--  264 (470)
                      ..+|.+|...|++++|+.+|++++   +..|++....        ...+.+.|.++...|++++|+.++++++.+.+.  
T Consensus       159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~--------~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~  230 (293)
T 2qfc_A          159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD--------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN  230 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch--------HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999   4556543211        011233499999999999999999999987643  


Q ss_pred             CccchHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q psy16214        265 NININSKLLHNRATVLFKMGKYNEA-IADCTLALEK  299 (470)
Q Consensus       265 ~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~  299 (470)
                      +....+.++.++|.++..+|++++| ..++++++.+
T Consensus       231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            2223478899999999999999999 8889999875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.61  E-value=1.8e-14  Score=122.16  Aligned_cols=124  Identities=26%  Similarity=0.284  Sum_probs=114.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh----------------HHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA----------------AYYGNRAACYMMLGMYTYALDDAKLAVS   66 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~~a~~~~~~g~~~~A~~~~~~al~   66 (470)
                      .+..+..+|..++..|+|++|+..|++++...|.++                .++.++|.++..+|++++|+..++++++
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            466799999999999999999999999999999887                8999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214         67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS  126 (470)
Q Consensus        67 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  126 (470)
                      ++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...+....+.
T Consensus       117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877766554443

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.4e-15  Score=107.47  Aligned_cols=71  Identities=52%  Similarity=0.784  Sum_probs=63.9

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+||+...++..+|+++|++++++||||++...    .+.++++|+.|++||++|+||.+|..||....
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   77 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPEN----KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS   77 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTT----HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence            457899999999999999999999999999999998752    35678899999999999999999999998543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=2.4e-14  Score=112.07  Aligned_cols=117  Identities=35%  Similarity=0.476  Sum_probs=111.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+++.++..+|.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMA  119 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~  119 (470)
                      ..+|++++|+..+++++++.|+++.++..++.++...
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888775443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.60  E-value=1.9e-14  Score=112.65  Aligned_cols=112  Identities=17%  Similarity=0.148  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC---HHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA---AYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF---SKGLIR   77 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~   77 (470)
                      ++.++.+|..++..|+|++|+..|++++..+|+++   .+++.+|.++...|++++|+..+++++..+|++   +.+++.
T Consensus         2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            45688999999999999999999999999999987   799999999999999999999999999999999   899999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         78 QIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        78 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      +|.++..+|++++|+..|++++...|+++.+......+
T Consensus        82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            99999999999999999999999999998876555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.60  E-value=3.3e-14  Score=120.92  Aligned_cols=162  Identities=18%  Similarity=0.102  Sum_probs=122.5

Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCC------ChHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAP------DHAKAKETYKRAKLLKAKK  236 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p------~~~~~~~~~~~~~~~~~~~  236 (470)
                      +..|++++|...++.+....+..+.++..+|.++...|++++|+..+++++....      ....++..+          
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l----------   72 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV----------   72 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH----------
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH----------
Confidence            4567888888855544443335677888889999999999999999988887432      223333333          


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhh---cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHH
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP--NY----LKAL  307 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~  307 (470)
                        |.++...|++++|+..+++++..   .++++.....++.++|.++..+|++++|+.++++++.+.+  .+    ..++
T Consensus        73 --~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  150 (203)
T 3gw4_A           73 --GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF  150 (203)
T ss_dssp             --HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             --HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence              99999999999999999999987   3323323567899999999999999999999999997632  22    3457


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        308 SRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       308 ~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ..+|.++...|++++|+..+++++++...
T Consensus       151 ~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          151 RGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999988654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.59  E-value=2.8e-14  Score=112.18  Aligned_cols=121  Identities=19%  Similarity=0.139  Sum_probs=81.6

Q ss_pred             CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                      |.++..++.+|.++...|++++|+..+++++..+|++..++..+            |.++...|++++|+.++++++...
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNR------------AACYTKLLEFQLALKDCEECIQLE   80 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHH------------HHHHTTTTCHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH------------HHHHHHhccHHHHHHHHHHHHHhC
Confidence            44456666666666666677777777776666666666666555            666666677777777777777666


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      |.    ...++..+|.++..+|++++|+.++++++..+|.+..++..++.++..+|+
T Consensus        81 ~~----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           81 PT----FIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             CC----chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            66    344566777777777777777777777777777777777777777666553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.59  E-value=3e-14  Score=116.84  Aligned_cols=95  Identities=33%  Similarity=0.394  Sum_probs=92.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  317 (470)
                      .|.+++..|++++|+.+|++++.++|.    ...++.++|.++..+|++++|+.+|+++++++|+++.+++.+|.++..+
T Consensus        17 ~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           17 EGNAAMARKEYSKAIDLYTQALSIAPA----NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCc----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            399999999999999999999999999    4677999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q psy16214        318 GQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       318 g~~~~A~~~~~~a~~~~p~  336 (470)
                      |++++|+.+|+++++++|+
T Consensus        93 g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           93 ADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHSS
T ss_pred             cCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999997

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.59  E-value=1.9e-14  Score=138.33  Aligned_cols=127  Identities=25%  Similarity=0.354  Sum_probs=115.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---------------AAYYGNRAACYMMLGMYTYALDDAKLAVSL   67 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   67 (470)
                      .+..++.+|..++..|+|++|+..|++++..+|.+               ..+++++|.|+..+|++++|+..|++++++
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            35689999999999999999999999999999988               689999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAF  129 (470)
Q Consensus        68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~  129 (470)
                      +|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++...+.+..+...+
T Consensus       347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~  408 (457)
T 1kt0_A          347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI  408 (457)
T ss_dssp             STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888777666543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5.6e-14  Score=112.75  Aligned_cols=114  Identities=28%  Similarity=0.373  Sum_probs=108.3

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ   78 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   78 (470)
                      ..+..++.+|..++..|+|++|+.+|++++..+|++   ..++..+|.++...|++++|+..+++++..+|+++.+++.+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            357889999999999999999999999999999998   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      |.++..+|++++|+..|++++.++|++..++..+..+
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            9999999999999999999999999999887766655

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=1.3e-15  Score=108.77  Aligned_cols=69  Identities=42%  Similarity=0.628  Sum_probs=62.3

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+||+...++..+|+++||++++++|||++..      ..++++|+.|++||++|+||.+|..||...+
T Consensus        15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   83 (88)
T 2cug_A           15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD------PGAEDRFIQISKAYEILSNEEKRTNYDHYGS   83 (88)
T ss_dssp             SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS------TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC------hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence            34689999999999999999999999999999999876      2467889999999999999999999998543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.58  E-value=1.1e-13  Score=125.19  Aligned_cols=169  Identities=11%  Similarity=0.059  Sum_probs=135.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------HHHH
Q psy16214        123 EGASKAFEANDYRTAMFYLDRAMDQGVASKT------YKLMKAECLAHLNRLQEAQEIANSILATDKQNP------DAVF  190 (470)
Q Consensus       123 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~  190 (470)
                      ..+..++..+++++|+..+++++...+..+.      ++..+|.++...+++++|+..+++++...+...      .++.
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3456678899999999999999998877665      333588888888999999999999998655433      3789


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHhhCC---ChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc-
Q psy16214        191 VRGLCLYYDDKMDLAVNHFQLLLKLAP---DHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI-  266 (470)
Q Consensus       191 ~la~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-  266 (470)
                      .+|.+|...|++++|+.+|+++++...   .+...        ....+.+.|.++...|++++|+.++++++.+.+... 
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~--------~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~  231 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF--------DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH--------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence            999999999999999999999996321   21111        111223449999999999999999999998876532 


Q ss_pred             -cchHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q psy16214        267 -NINSKLLHNRATVLFKMG-KYNEAIADCTLALEK  299 (470)
Q Consensus       267 -~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~  299 (470)
                       ...+.++.++|.++..+| .+++|+.++++++.+
T Consensus       232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence             224789999999999999 579999999999976

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.58  E-value=2.7e-14  Score=111.83  Aligned_cols=122  Identities=20%  Similarity=0.111  Sum_probs=89.4

Q ss_pred             CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q psy16214        183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID  262 (470)
Q Consensus       183 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  262 (470)
                      |.++..+..+|.++...|++++|+..+++++...|++..++..+            |.++...|++++|+..+++++...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~~~~~   76 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNR------------AAAYSKLGNYAGAVQDCERAICID   76 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHhhchHHHHHHHHHHHhcC
Confidence            44456677777777777777777777777777777776666666            777777777777777777777777


Q ss_pred             ccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q psy16214        263 ARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY  320 (470)
Q Consensus       263 p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  320 (470)
                      |++    ..++..+|.++..+|++++|+.++++++..+|+++.++..++.++..+|++
T Consensus        77 ~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           77 PAY----SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             TTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             ccC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            763    455777777777777777777777777777777777777777777777664

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.58  E-value=9.7e-16  Score=111.41  Aligned_cols=68  Identities=56%  Similarity=0.829  Sum_probs=62.0

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      .++|.+||+..+++.++|+++|+++++++|||++...    ++.++++|+.|++||++|+||.+|..||..+
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~----~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g   69 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDN----KEFAEKKFKEVAEAYEVLSDKHKREIYDRYG   69 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSC----CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCcc----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhC
Confidence            5799999999999999999999999999999998763    3467889999999999999999999999843

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.57  E-value=2e-15  Score=145.16  Aligned_cols=157  Identities=18%  Similarity=0.127  Sum_probs=107.0

Q ss_pred             cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH---HHHHHHHHHHHHHHHHHH
Q psy16214        165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK---ETYKRAKLLKAKKEEGNE  241 (470)
Q Consensus       165 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~---~~~~~~~~~~~~~~~~~~  241 (470)
                      ++++++|+..+..++...|..+..+..+|.+++..|++++|+..|++++.++|.+....   ...........+.+.|.+
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666677777777777777777777777777777776652100   000000011222333888


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Q psy16214        242 KFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYK  321 (470)
Q Consensus       242 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  321 (470)
                      +...+++++|+..|++++.++|+    +..+++++|.++..+|++++|+.+|+++++++|++..++..++.++..+++++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~  402 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDSA----NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN  402 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCCc----cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888887    45668888888888888888888888888888888888888888888888887


Q ss_pred             HHHH
Q psy16214        322 ECVI  325 (470)
Q Consensus       322 ~A~~  325 (470)
                      +|..
T Consensus       403 ~a~~  406 (457)
T 1kt0_A          403 ERDR  406 (457)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.56  E-value=1.3e-13  Score=106.92  Aligned_cols=114  Identities=27%  Similarity=0.339  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..++.+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      ..|++++|+..+++++...|+++.++..++.++.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999998888777643

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.8e-13  Score=131.17  Aligned_cols=233  Identities=9%  Similarity=0.025  Sum_probs=144.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .|......|..+...|+|++|++.|.++++..|.........+......+..+                 .++..+|.+|
T Consensus         3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~al~~l~~~y   65 (434)
T 4b4t_Q            3 LPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE-----------------TSILELGQLY   65 (434)
T ss_dssp             STTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH-----------------HHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH-----------------HHHHHHHHHH
Confidence            46677788888888899999999999888887765332211111111111111                 1234455555


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ------GVASKTYKL  156 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~  156 (470)
                      ...|++++|++++.+++...+........ ..+.     ...+......+++++|+..+..++..      .+....++.
T Consensus        66 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  139 (434)
T 4b4t_Q           66 VTMGAKDKLREFIPHSTEYMMQFAKSKTV-KVLK-----TLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSI  139 (434)
T ss_dssp             HHHTCHHHHHHHHHHTHHHHHTSCHHHHH-HHHH-----HHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHccchHHH-HHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHH
Confidence            55555555555555555443332221100 0000     00011122345556666666555544      223356788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhcC------CCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q psy16214        157 MKAECLAHLNRLQEAQEIANSILATD------KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAK  230 (470)
Q Consensus       157 ~~a~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~  230 (470)
                      .+|.++...|+|++|+..+.+++...      +...+++..++.++...|++++|...+++++...+...........+ 
T Consensus       140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-  218 (434)
T 4b4t_Q          140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL-  218 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH-
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH-
Confidence            89999999999999999999987652      33357899999999999999999999999987643221111111111 


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy16214        231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA  263 (470)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  263 (470)
                          ....|..+...+++.+|..+|.+++...+
T Consensus       219 ----~~~~g~~~~~~~~y~~A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          219 ----DLMSGILHCEDKDYKTAFSYFFESFESYH  247 (434)
T ss_dssp             ----HHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence                12238889999999999999999987543

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.56  E-value=7.5e-15  Score=121.86  Aligned_cols=85  Identities=24%  Similarity=0.359  Sum_probs=72.2

Q ss_pred             ccchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhcc---CCCCC
Q psy16214        355 VKDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYD---RGEDI  429 (470)
Q Consensus       355 ~~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd---~~~~~  429 (470)
                      ..+||.+||++..  ++..+|+++||++++++|||++.+.++.+++.+.++|+.|++||++|+||.+|+.||   .|.+.
T Consensus        42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~  121 (207)
T 3bvo_A           42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHGIEI  121 (207)
T ss_dssp             TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTTCCC
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcCCCc
Confidence            4689999999986  689999999999999999999998777778889999999999999999999999998   45554


Q ss_pred             cCCCCCCCCCc
Q psy16214        430 MEDSGMGGHAG  440 (470)
Q Consensus       430 ~~~~~~~~~~~  440 (470)
                      ... +....||
T Consensus       122 ~~e-~~~~~d~  131 (207)
T 3bvo_A          122 PER-TDYEMDR  131 (207)
T ss_dssp             CSS-CSSSSCH
T ss_pred             ccc-cccCCCH
Confidence            432 2334677

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.56  E-value=8.7e-15  Score=134.94  Aligned_cols=139  Identities=25%  Similarity=0.352  Sum_probs=94.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchh-----------------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVA-----------------AYYGNRAACYMMLGMYTYALDDAKLAV   65 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~~a~~~~~~g~~~~A~~~~~~al   65 (470)
                      .+..++.+|..++..|+|++|+..|++++...|++.                 .+++++|.++..+|++++|+..|++++
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999999877                 489999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214         66 SLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAM  145 (470)
Q Consensus        66 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l  145 (470)
                      +++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+..           ...+..+++...+.+++
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~-----------~~~~~~~~a~~~~~~~l  326 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE-----------QEKALYQKQKEMYKGIF  326 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999988877766532           22345566667777777


Q ss_pred             HhCCCCH
Q psy16214        146 DQGVASK  152 (470)
Q Consensus       146 ~~~p~~~  152 (470)
                      ...|.++
T Consensus       327 ~~~p~~~  333 (338)
T 2if4_A          327 KGKDEGG  333 (338)
T ss_dssp             -------
T ss_pred             CCCCCCC
Confidence            7777654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.55  E-value=9e-14  Score=129.48  Aligned_cols=125  Identities=26%  Similarity=0.345  Sum_probs=116.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----------------cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAIS----------------VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVS   66 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~   66 (470)
                      .+..+..+|..++..|+|++|+..|+++++                .+|.++.++.++|.+++.+|++++|+.+++++++
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  301 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE  301 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            356799999999999999999999999998                7888899999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214         67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK  127 (470)
Q Consensus        67 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~  127 (470)
                      ++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.+....+....+..
T Consensus       302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998877776665543

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.55  E-value=6.5e-15  Score=109.54  Aligned_cols=70  Identities=47%  Similarity=0.712  Sum_probs=63.1

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+||+...++..+|+++|+++++++|||++.+.     ..++++|+.|++||++|+||.+|..||....
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~-----~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~   84 (109)
T 2ctw_A           15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDN-----PEAADKFKEINNAHAILTDATKRNIYDKYGS   84 (109)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTC-----HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCc-----HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence            346899999999999999999999999999999998752     3578899999999999999999999997553

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=3.1e-15  Score=112.02  Aligned_cols=69  Identities=32%  Similarity=0.612  Sum_probs=62.7

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      ...++|.+||+...++..+|+++||++++++|||++.+.+     .++++|+.|++||++|+||.+|..||...
T Consensus        18 ~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~-----~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~   86 (112)
T 2ctq_A           18 DTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENP-----KAVETFQKLQKAKEILTNEESRARYDHWR   86 (112)
T ss_dssp             CCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCS-----THHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH-----HHHHHHHHHHHHHHHHCCHHHHHHHHHhh
Confidence            4579999999999999999999999999999999987522     47889999999999999999999999854

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.55  E-value=7e-14  Score=108.01  Aligned_cols=95  Identities=11%  Similarity=-0.012  Sum_probs=88.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  317 (470)
                      .|..+...|++++|+..|+++++.+|+    .+.+|+.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~P~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            399999999999999999999999999    5677999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCC
Q psy16214        318 GQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       318 g~~~~A~~~~~~a~~~~p~  336 (470)
                      |++++|+..|+++++++|+
T Consensus        99 g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHHhCcC
Confidence            9999999999999999986

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.54  E-value=3.6e-11  Score=116.17  Aligned_cols=320  Identities=8%  Similarity=-0.063  Sum_probs=185.1

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhc---CCCCHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM-YTYALDDAKLAVSL---DPRFSKGLIRQ   78 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~l   78 (470)
                      .+...+..+...+-.|+++.+..+|++++...| +..+|..........+. .+.....|+.++..   +|.+...|...
T Consensus        13 ~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y   91 (493)
T 2uy1_A           13 SPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY   91 (493)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence            456778888888888999999999999999988 67788887777777663 35566788888874   78888888888


Q ss_pred             HHHHH----HcCChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhCCC-
Q psy16214         79 IKCNI----ALGDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAF--EANDYRTAMFYLDRAMDQGVA-  150 (470)
Q Consensus        79 a~~~~----~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~--~~~~~~~A~~~~~~~l~~~p~-  150 (470)
                      +..+.    ..++.+.+..+|++++...+.+.. .|..........+ ...+...+  ....+..|...+..+....+. 
T Consensus        92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~-~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~  170 (493)
T 2uy1_A           92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELN-KITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW  170 (493)
T ss_dssp             HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhc-cccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence            87654    346788999999999995333322 2222222111000 00000000  001122222222222222111 


Q ss_pred             CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        151 SKTYKLMKAECLAHL--NR-----LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       151 ~~~~~~~~a~~~~~~--~~-----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      +...|......-...  +-     ...+...|++++...|..+.+|+..+..+...|+.+.|...|++++.. |.+...+
T Consensus       171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~  249 (493)
T 2uy1_A          171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLS  249 (493)
T ss_dssp             SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHH
T ss_pred             cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHH
Confidence            222222222211110  00     122334444444444444444444444444444444444444444444 4443333


Q ss_pred             HHHHHHH----------------------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHH
Q psy16214        224 ETYKRAK----------------------------LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHN  275 (470)
Q Consensus       224 ~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  275 (470)
                      ..+....                            ....+..-+....+.+..+.|...|+++ . .|..   ...+|..
T Consensus       250 ~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~~---~~~v~i~  324 (493)
T 2uy1_A          250 LYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEGV---GPHVFIY  324 (493)
T ss_dssp             HHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSCC---CHHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCCC---ChHHHHH
Confidence            2221110                            0001111244455567788899999998 3 3331   3456666


Q ss_pred             HHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        276 RATVLFKMG-KYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       276 la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                      .|.+....+ +.+.|...|+.+++..|+.+..+...+......|+.+.|...|+++
T Consensus       325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            676666655 5889999999999988988888888888888899999999999887

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=4.1e-13  Score=103.99  Aligned_cols=117  Identities=31%  Similarity=0.440  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214        186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN  265 (470)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  265 (470)
                      +.+++.+|.++...|++++|+..+++++...|++..++..+            |.++...|++++|+..+++++...|.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~~~~~~~~   76 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL------------GNAYYKQGDYDEAIEYYQKALELDPNN   76 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHHhCCcc
Confidence            55667777777777777777777777777777666666555            777777777777777777777776663


Q ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                          ..++..+|.++...|++++|+..+++++..+|+++.++..++.++...|
T Consensus        77 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           77 ----AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence                4457777777777777777777777777777777777777777766543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.54  E-value=1.6e-13  Score=107.44  Aligned_cols=116  Identities=24%  Similarity=0.269  Sum_probs=107.2

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-------HHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-------SKG   74 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~   74 (470)
                      ..+..++.+|..++..|++++|+.+|++++..+|.++.++..+|.++...|++++|+..+++++...|.+       +.+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999999999998877       899


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214         75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM  118 (470)
Q Consensus        75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  118 (470)
                      ++.+|.++..+|++++|+..|+++++..| ++.....++.+...
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            99999999999999999999999999998 57777776666443

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.53  E-value=6.5e-15  Score=109.99  Aligned_cols=72  Identities=33%  Similarity=0.563  Sum_probs=65.9

Q ss_pred             cccchhhhccCCCCC-CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        354 EVKDYYKILGVTKNA-SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~-~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      ...++|.+||+...+ +..+|+++||++++++|||++.+  +..++.++++|+.|++||++|+||.+|..||...
T Consensus        13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~--~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~   85 (109)
T 2qsa_A           13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKN--KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYL   85 (109)
T ss_dssp             TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCS--HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence            357899999999999 99999999999999999999876  5566778999999999999999999999999854

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.53  E-value=1.4e-14  Score=115.82  Aligned_cols=75  Identities=31%  Similarity=0.525  Sum_probs=67.7

Q ss_pred             ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCcc-HHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNAT-QAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       353 ~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~-~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      ....++|.+||++..++..+|+++||++++++|||++...+ +..++.+.++|+.|++||++|+||.+|+.||...
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~   82 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQR   82 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            45678999999999999999999999999999999998764 3667778999999999999999999999999643

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.53  E-value=1.3e-14  Score=116.95  Aligned_cols=70  Identities=20%  Similarity=0.424  Sum_probs=66.1

Q ss_pred             chhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCC
Q psy16214        357 DYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRG  426 (470)
Q Consensus       357 ~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~  426 (470)
                      +||.+||++..+  +..+|+++||+++++||||++++.++..+..+..+|..|++||++|+||.+|..||..
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~   73 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS   73 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            689999999999  9999999999999999999999888888888999999999999999999999999973

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.53  E-value=1.5e-13  Score=108.77  Aligned_cols=106  Identities=29%  Similarity=0.391  Sum_probs=70.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |..++..|++++|+..|++++..+|.    ...++.++|.++..+|++++|+..+++++.++|+++.+++.+|.++..+|
T Consensus        16 g~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   91 (137)
T 3q49_B           16 GNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   91 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCcHHHHHHHHHHHHhhCcC----cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence            66666666666666666666666666    34456677777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCC------hhHHHHHHHHHH
Q psy16214        319 QYKECVIDAEKIYKMDNS------RENHNFLEEAKR  348 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~~p~------~~~~~~l~~~~~  348 (470)
                      ++++|+..|+++++++|+      ..+...+..+..
T Consensus        92 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~  127 (137)
T 3q49_B           92 SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK  127 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence            777777777777766654      334444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.52  E-value=3e-14  Score=112.46  Aligned_cols=97  Identities=11%  Similarity=0.117  Sum_probs=89.3

Q ss_pred             HhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214         15 YKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMY----------TYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus        15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      -+.+.|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|+++++++|++..+|+.+|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3557899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------ChHHHHHHHHHHHhcCCCChHHHHH
Q psy16214         85 LG-----------DAPTARSNLKALQELDPDNPAIAQE  111 (470)
Q Consensus        85 ~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~  111 (470)
                      +|           ++++|+.+|+++++++|++...+..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a  130 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  130 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            85           8999999999999999998765433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.52  E-value=4e-13  Score=114.13  Aligned_cols=160  Identities=16%  Similarity=0.110  Sum_probs=128.4

Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhh------cCCCChHHHHHHHHHHhccCCh
Q psy16214        129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA------TDKQNPDAVFVRGLCLYYDDKM  202 (470)
Q Consensus       129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~p~~~~~~~~la~~~~~~g~~  202 (470)
                      +..|++++|...++.+....+....++..+|.++...|++++|+..+++++.      ..|....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            5678899999865555443336678999999999999999999999999998      3444567899999999999999


Q ss_pred             HHHHHHHHHHHhh---CCChH----HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHH
Q psy16214        203 DLAVNHFQLLLKL---APDHA----KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLL  273 (470)
Q Consensus       203 ~~A~~~~~~~l~~---~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~  273 (470)
                      ++|+..+++++..   .++++    .++..            .|.++...|++++|+.++++++...+.  ++.....++
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~------------lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  150 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYE------------VATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF  150 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH------------HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHH------------HHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            9999999999987   44322    22333            399999999999999999999977543  333345678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        274 HNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       274 ~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                      .++|.++...|++++|+.++++++++.
T Consensus       151 ~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          151 RGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999874

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.51  E-value=1.3e-13  Score=104.70  Aligned_cols=104  Identities=14%  Similarity=0.164  Sum_probs=100.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR--FSKGLIRQIK   80 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~   80 (470)
                      .+..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|.  +..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999  9999999999


Q ss_pred             HHHHc-CChHHHHHHHHHHHhcCCCCh
Q psy16214         81 CNIAL-GDAPTARSNLKALQELDPDNP  106 (470)
Q Consensus        81 ~~~~~-g~~~~A~~~~~~~l~~~p~~~  106 (470)
                      ++..+ |++++|+.++.+++...|.++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999 999999999999999998764

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.51  E-value=5.1e-15  Score=109.82  Aligned_cols=65  Identities=23%  Similarity=0.338  Sum_probs=59.1

Q ss_pred             ccchhhhccCCCCCCH--HHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        355 VKDYYKILGVTKNASS--DDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~--~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ..++|.+|||...++.  .+|+++||++++++|||++.+         +++|+.|++||++|+||.+|+.||..++
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~---------~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc---------HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4689999999999998  999999999999999999875         3579999999999999999999997543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=8.2e-13  Score=101.13  Aligned_cols=94  Identities=28%  Similarity=0.465  Sum_probs=47.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      |..+...|++++|+..+++++...|.+    ..++..+|.++...|++++|+..+++++..+|+++.++..+|.++..+|
T Consensus        11 ~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   86 (118)
T 1elw_A           11 GNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   86 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence            444445555555555555555444442    2334445555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q psy16214        319 QYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       319 ~~~~A~~~~~~a~~~~p~  336 (470)
                      ++++|+..++++++++|+
T Consensus        87 ~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           87 RFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             CHHHHHHHHHHHHTTCTT
T ss_pred             hHHHHHHHHHHHHHcCCC
Confidence            555555555555555544

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.49  E-value=1.4e-14  Score=100.38  Aligned_cols=65  Identities=18%  Similarity=0.452  Sum_probs=58.0

Q ss_pred             cccchhhhccCCCC--CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        354 EVKDYYKILGVTKN--ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       354 ~~~~~y~~lg~~~~--~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      +..++|.+||+...  ++..+|+++||++++++|||++.+         .++|+.|++||++|+|+.+|.+++-|.
T Consensus         9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~---------~~~f~~i~~AYe~L~~~~~r~~~~~g~   75 (79)
T 1faf_A            9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHHhhHHHHHHHhcCC
Confidence            44688999999999  999999999999999999999765         468999999999999999999865443

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.49  E-value=2.9e-14  Score=121.81  Aligned_cols=68  Identities=37%  Similarity=0.693  Sum_probs=61.6

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .++|.+||+..+++..+|+++||+++++||||+++..+     .++++|+.|++||++|+||.+|+.||..++
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~-----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~   69 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNP-----NAHGDFLKINRAYEVLKDEDLRKKYDKYGE   69 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCT-----THHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCh-----HHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence            57999999999999999999999999999999987532     477899999999999999999999998544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.49  E-value=6.2e-14  Score=107.73  Aligned_cols=94  Identities=19%  Similarity=0.137  Sum_probs=86.4

Q ss_pred             hcCCHHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         16 KLKQYSKALKCYSEAISV---CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        16 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      ..|++++|+.+|+++++.   +|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHH
Q psy16214         93 SNLKALQELDPDNPAIA  109 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~  109 (470)
                      ..+++++...|+++.+.
T Consensus        82 ~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHhCCCcHHHH
Confidence            99999999999998764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.49  E-value=6.5e-13  Score=103.85  Aligned_cols=114  Identities=25%  Similarity=0.364  Sum_probs=103.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-------LKALS  308 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  308 (470)
                      ...|..+...|++++|+..+++++...|.+    ..++..+|.++...|++++|+.++++++...|++       +.+++
T Consensus         8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            8 KELGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            334999999999999999999999999984    5679999999999999999999999999998877       99999


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhhcc
Q psy16214        309 RRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRS  353 (470)
Q Consensus       309 ~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~~~  353 (470)
                      .+|.++..+|++++|+.+|++++++.|+......+..+...+++.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999887888887777666543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=8.1e-13  Score=105.89  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             CCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214        182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDH---AKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA  258 (470)
Q Consensus       182 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  258 (470)
                      .|.+...++.+|.++...|++++|+..|++++...|++   ..++..+            |.++...+++++|+..++++
T Consensus        24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~~   91 (148)
T 2dba_A           24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNR------------AACHLKLEDYDKAETEASKA   91 (148)
T ss_dssp             TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHH------------HHHHHHHccHHHHHHHHHHH
Confidence            34455566666666666666666666666666666654   3333333            55555555555555555555


Q ss_pred             HhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        259 LKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       259 l~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                      +...|++    ..+++.+|.++..+|++++|+.++++++.++|++..++..++.+
T Consensus        92 ~~~~~~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A           92 IEKDGGD----VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHTSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HhhCccC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            5555542    33455555555555555555555555555555555555544444

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.48  E-value=6.1e-15  Score=103.86  Aligned_cols=76  Identities=24%  Similarity=0.414  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCC
Q psy16214        337 RENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSD  416 (470)
Q Consensus       337 ~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d  416 (470)
                      .+++.+|..+...+..+  ..+|++||+...+++.+||+|||++++++||||+++.+  .+..++++|+.|++||+||.+
T Consensus        16 ~~ir~lL~~l~~~L~~~--~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~--~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           16 RNIRALLSTMHTVLWAG--ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQP--YEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             TCHHHHHHHGGGTSCTT--CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTST--THHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccc--ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch--hHhHHHHHHHHHHHHHHHHHh
Confidence            44566666665555543  47899999999999999999999999999999988642  224689999999999999865

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.48  E-value=1.4e-14  Score=139.92  Aligned_cols=135  Identities=14%  Similarity=0.201  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214        186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN  265 (470)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  265 (470)
                      +..+..+|.++...|++++|+..|+++++.+|++..++..+            |.++...|++++|+..++++++++|+ 
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~l------------g~~~~~~g~~~~A~~~~~~al~l~p~-   72 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR------------SLAYLRTECYGYALGDATRAIELDKK-   72 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHSCTT-
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH------------HHHHHHhcCHHHHHHHHHHHHHhCCC-
Confidence            34556677788888888888888888888888888888777            88888888888888888888888888 


Q ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHh
Q psy16214        266 ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC--FHALGQYKECVIDAE-----------KIYK  332 (470)
Q Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~a~~  332 (470)
                         .+.++.++|.++..+|++++|+..++++++++|++..++..++.+  +...|++++|+..++           ++++
T Consensus        73 ---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~  149 (477)
T 1wao_1           73 ---YIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMT  149 (477)
T ss_dssp             ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCC
T ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcc
Confidence               456788889999999999999999999999988888888888888  788889999999888           7777


Q ss_pred             cCCC
Q psy16214        333 MDNS  336 (470)
Q Consensus       333 ~~p~  336 (470)
                      +.|+
T Consensus       150 ~~~~  153 (477)
T 1wao_1          150 IEDE  153 (477)
T ss_dssp             CCTT
T ss_pred             cccc
Confidence            7765

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.4e-14  Score=101.59  Aligned_cols=63  Identities=38%  Similarity=0.522  Sum_probs=56.9

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhh
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSR  422 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~  422 (470)
                      ...++|++|||...++..+|+++||+++++||||++..      ..++++|+.|++||++|+|+.+|..
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~------~~~~~~f~~i~~Ay~~L~d~~~R~~   87 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA------PGSEDAFKAVVNARTALLKNIKSGP   87 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC------TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC------ccHHHHHHHHHHHHHHHCCcccccC
Confidence            34789999999999999999999999999999999875      2367789999999999999999874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.47  E-value=5.1e-14  Score=135.91  Aligned_cols=130  Identities=32%  Similarity=0.517  Sum_probs=113.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.+..+|..++..|+|++|+.+|+++++.+|+++.++.++|.++..+|++++|+..++++++++|+++.+++.+|.+|
T Consensus         5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   84 (477)
T 1wao_1            5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   84 (477)
T ss_dssp             HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLD  142 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  142 (470)
                      ..+|++++|+..|+++++++|++..++..++.+.          .+...+++++|+..++
T Consensus        85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~----------~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECN----------KIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH----------HHHHHHHHCCC-----
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------HHHHHHHHHHHhcccc
Confidence            9999999999999999999999998887766652          2334466677777777

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.46  E-value=2.2e-12  Score=100.77  Aligned_cols=97  Identities=11%  Similarity=0.097  Sum_probs=69.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRCKCFH  315 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~  315 (470)
                      |..++..|++++|+..|++++...|+++. ...+++.+|.++...|++++|+..+++++..+|++   +.+++.+|.++.
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~   87 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY   87 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence            66677777777777777777777776542 23567777777777777777777777777777777   677777777777


Q ss_pred             HhCCHHHHHHHHHHHHhcCCC
Q psy16214        316 ALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       316 ~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .+|++++|+..|+++++..|+
T Consensus        88 ~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           88 GEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT
T ss_pred             HcCCHHHHHHHHHHHHHHCCC
Confidence            777777777777777777776

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.46  E-value=5.4e-12  Score=120.75  Aligned_cols=203  Identities=10%  Similarity=0.002  Sum_probs=166.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Q psy16214        121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASK-----------------TYKLMKAECLAHLNRLQEAQEIANSILATDK  183 (470)
Q Consensus       121 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p  183 (470)
                      .++.|..+...|+|++|+..+.++++..|...                 .++..+|.+|...|++++|++.+.+++...+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999877653                 3578899999999999999999999988766


Q ss_pred             CChH------HHHHHHHHHhccCChHHHHHHHHHHHhhCCC------hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Q psy16214        184 QNPD------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD------HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA  251 (470)
Q Consensus       184 ~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  251 (470)
                      ....      +...++.++...|++++|+.++++++...+.      ...+...+            |.++...|++.+|
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l------------a~~~~~~g~~~~A  154 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKL------------ATLHYQKKQYKDS  154 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHH------------HHHHHHHTCHHHH
T ss_pred             HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH------------HHHHHHccChHHH
Confidence            5433      4567888889999999999999999875432      22333344            9999999999999


Q ss_pred             HHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHhCCHHH
Q psy16214        252 FDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP---NY----LKALSRRCKCFHALGQYKE  322 (470)
Q Consensus       252 ~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~----~~~~~~la~~~~~~g~~~~  322 (470)
                      +.++++++.....  +......++..++.+|..+|++++|...+++++...+   ..    ...+...|.++...+++++
T Consensus       155 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~  234 (434)
T 4b4t_Q          155 LALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT  234 (434)
T ss_dssp             HHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH
T ss_pred             HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999865322  2233578899999999999999999999999987732   22    4567788999999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy16214        323 CVIDAEKIYKMDN  335 (470)
Q Consensus       323 A~~~~~~a~~~~p  335 (470)
                      |..+|.++++..+
T Consensus       235 A~~~~~~a~~~~~  247 (434)
T 4b4t_Q          235 AFSYFFESFESYH  247 (434)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.45  E-value=7e-13  Score=100.53  Aligned_cols=105  Identities=15%  Similarity=0.278  Sum_probs=97.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214        216 APDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL  295 (470)
Q Consensus       216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (470)
                      +|++..++..+            |.++...|++++|+..+++++...|.    ...++..+|.++..+|++++|+..+++
T Consensus         2 ~p~~~~~~~~~------------~~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~~~a~~~~~~~~~~~A~~~~~~   65 (112)
T 2kck_A            2 VDQNPEEYYLE------------GVLQYDAGNYTESIDLFEKAIQLDPE----ESKYWLMKGKALYNLERYEEAVDCYNY   65 (112)
T ss_dssp             CCSSTTGGGGH------------HHHHHSSCCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHH------------HHHHHHhhhHHHHHHHHHHHHHhCcC----CHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            56666666666            99999999999999999999999998    456799999999999999999999999


Q ss_pred             HHHhCCC--CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCC
Q psy16214        296 ALEKDPN--YLKALSRRCKCFHAL-GQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       296 al~~~p~--~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~p~  336 (470)
                      +++.+|+  +..++..+|.++..+ |++++|+.++++++...|+
T Consensus        66 a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           66 VINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            9999999  999999999999999 9999999999999999986

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.45  E-value=2.1e-13  Score=125.73  Aligned_cols=147  Identities=15%  Similarity=0.120  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHH-----HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q psy16214        186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKET-----YKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALK  260 (470)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  260 (470)
                      ...+..+|.+++..|++++|+..|++++...|++......     .........+.+.|.++...|++++|+.+|++++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566777777777777777777777777777765410000     00000001122236666666666666666666666


Q ss_pred             hcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        261 IDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC-FHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       261 ~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++|+    +..+++++|.++..+|++++|+.+|+++++++|++..++..++.+ ....+..+++...|++++...|+
T Consensus       259 ~~p~----~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          259 EEEK----NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             HCTT----CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred             hCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            6665    344566666666666666666666666666666666666666655 23344555556666666666554

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.42  E-value=6.1e-13  Score=105.00  Aligned_cols=90  Identities=13%  Similarity=0.097  Sum_probs=83.0

Q ss_pred             hcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKY----------NEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       244 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                      +.+.+++|++.++++++++|+    .+.+|.++|.++..++++          ++|+..|+++++++|++..+|+++|.+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~----~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a   89 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL----DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            346789999999999999999    567799999999999875          599999999999999999999999999


Q ss_pred             HHHhC-----------CHHHHHHHHHHHHhcCCCh
Q psy16214        314 FHALG-----------QYKECVIDAEKIYKMDNSR  337 (470)
Q Consensus       314 ~~~~g-----------~~~~A~~~~~~a~~~~p~~  337 (470)
                      |..+|           ++++|+.+|++|++++|+.
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            99885           8999999999999999984

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.42  E-value=2.3e-12  Score=120.01  Aligned_cols=129  Identities=20%  Similarity=0.315  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc
Q psy16214        187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNI  266 (470)
Q Consensus       187 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~  266 (470)
                      ..+..+|.+++..|++++|+..|+++++..+..+                              +....+......|.  
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------------------~~~~~~~~~~~~~~--  271 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------------------AAAEDADGAKLQPV--  271 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------------------HHSCHHHHGGGHHH--
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------------------cccChHHHHHHHHH--
Confidence            4567778888888888888888888877433211                              00012222333343  


Q ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q psy16214        267 NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEE  345 (470)
Q Consensus       267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~  345 (470)
                        ...++.++|.++..+|++++|+.+++++++++|+++.+++.+|.+|..+|++++|+..|+++++++|+ ..+...+..
T Consensus       272 --~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          272 --ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  349 (370)
T ss_dssp             --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence              34445555555555555555555555555555555555555555555555555555555555555554 334444444


Q ss_pred             HHHH
Q psy16214        346 AKRL  349 (470)
Q Consensus       346 ~~~~  349 (470)
                      +...
T Consensus       350 ~~~~  353 (370)
T 1ihg_A          350 VKQK  353 (370)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.42  E-value=9.5e-13  Score=101.02  Aligned_cols=91  Identities=20%  Similarity=0.188  Sum_probs=81.7

Q ss_pred             hcCCHHHHHHHHHHHHhh---cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Q psy16214        244 VAGKNQEAFDIYTEALKI---DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQY  320 (470)
Q Consensus       244 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  320 (470)
                      ..|++++|+.+|+++++.   +|+    ...++.++|.++..+|++++|+..++++++++|+++.+++.+|.++..+|++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~   77 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD----LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRY   77 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCH
Confidence            358899999999999999   566    5788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCChh
Q psy16214        321 KECVIDAEKIYKMDNSRE  338 (470)
Q Consensus       321 ~~A~~~~~~a~~~~p~~~  338 (470)
                      ++|+..++++++..|+..
T Consensus        78 ~~A~~~~~~al~~~p~~~   95 (117)
T 3k9i_A           78 EQGVELLLKIIAETSDDE   95 (117)
T ss_dssp             HHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHhCCCcH
Confidence            999999999999999743

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.41  E-value=1.2e-14  Score=115.52  Aligned_cols=67  Identities=24%  Similarity=0.336  Sum_probs=57.7

Q ss_pred             ccccchhhhccCCCCCC--HHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        353 SEVKDYYKILGVTKNAS--SDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       353 ~~~~~~y~~lg~~~~~~--~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      .+..++|++||+..+++  .++|+++||++++++|||++++         +++|+.|++||++|+||.+|+.||..++
T Consensus         8 ~~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~---------~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E            8 EESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C---------CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC---------HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            34578999999999998  5999999999999999999765         3579999999999999999999999664

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.41  E-value=6.9e-14  Score=102.39  Aligned_cols=78  Identities=21%  Similarity=0.339  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCC--ccHHhhHHHHHHHHHHHHHHhhcC
Q psy16214        338 ENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTN--ATQAQKLEQEKLFKEVGEAYGILS  415 (470)
Q Consensus       338 ~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~--~~~~~~~~~~~~~~~i~~ay~~l~  415 (470)
                      ++..+|..+...+.  ...+||.+||+.. ++..+||++||++++++||||++.  .+++.+..++++|+.|++||++|+
T Consensus        25 ~ir~lL~~l~~~l~--~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLs  101 (106)
T 3ag7_A           25 NIRSLLSTLQYILW--SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFN  101 (106)
T ss_dssp             CHHHHHTTGGGTSC--TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc--ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHc
Confidence            44444444333222  2368999999996 999999999999999999999874  356677789999999999999999


Q ss_pred             Chh
Q psy16214        416 DPT  418 (470)
Q Consensus       416 d~~  418 (470)
                      |+.
T Consensus       102 d~~  104 (106)
T 3ag7_A          102 TLG  104 (106)
T ss_dssp             TTC
T ss_pred             Ccc
Confidence            986

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.41  E-value=2.9e-12  Score=104.18  Aligned_cols=144  Identities=17%  Similarity=0.105  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC
Q psy16214        186 PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN  265 (470)
Q Consensus       186 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~  265 (470)
                      ..++..+|.++...|++++|+.++++++...+.......      ........|.++...|++++|+.++++++...+..
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA------ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            346777888888888888888888888876554322110      01122233889999999999999999998776542


Q ss_pred             --ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        266 --ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       266 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                        +.....++.++|.++...|++++|+.++++++.+.+.      ...++..+|.++...|++++|+.++++++++..
T Consensus        83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence              2224678889999999999999999999999977322      266888999999999999999999999998754

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.40  E-value=2.6e-13  Score=102.93  Aligned_cols=97  Identities=28%  Similarity=0.389  Sum_probs=90.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------HHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------SKGL   75 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~   75 (470)
                      .+++.++.+|..++..|+|++|+..|++++..+|+++.++.++|.++..+|++++|+..++++++++|++      ..++
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            3578899999999999999999999999999999999999999999999999999999999999999999      8999


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHH
Q psy16214         76 IRQIKCNIALGDAPTARSNLKAL   98 (470)
Q Consensus        76 ~~la~~~~~~g~~~~A~~~~~~~   98 (470)
                      +.+|.++..+|+++.|+..++++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHhHhhhHhHHHHh
Confidence            99999999999988887766554

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.40  E-value=1.6e-13  Score=109.78  Aligned_cols=66  Identities=26%  Similarity=0.505  Sum_probs=59.8

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhc
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY  423 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~y  423 (470)
                      .++|++||+...++..+|+++||++++++|||++...+.  +..++++|+.|++||++|+|+.+|+.|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~--e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPY--EQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTT--HHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcch--HHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            589999999999999999999999999999999986432  236889999999999999999999887

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.39  E-value=1.4e-13  Score=97.04  Aligned_cols=62  Identities=18%  Similarity=0.242  Sum_probs=55.8

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhh
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKR  420 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~  420 (470)
                      ..++|++||+..+++.++|+++||+++++||||++.+.    .+.++++|+.|++||++|+|...|
T Consensus        15 ~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~----~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc----hHHHHHHHHHHHHHHHHHHhhccc
Confidence            35789999999999999999999999999999998762    256789999999999999998777

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.36  E-value=6.5e-12  Score=102.05  Aligned_cols=144  Identities=14%  Similarity=0.015  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh------HHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQNP------DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      .++..+|.++...|++++|+..+.+++...+...      .++..+|.++...|++++|+..+++++...+.......  
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--   87 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV--   87 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH--
Confidence            4677899999999999999999999998765432      48889999999999999999999999986544311110  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC--ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN--ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                          ........|.++...|++++|+.++++++...+..  +.....++..+|.++..+|++++|+.++++++++...
T Consensus        88 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A           88 ----EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             ----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                01122334999999999999999999999875432  2334678999999999999999999999999987543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.31  E-value=2.1e-11  Score=93.09  Aligned_cols=85  Identities=14%  Similarity=0.077  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214         21 SKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      ++|+..|++++..+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCC
Q psy16214        101 LDPDN  105 (470)
Q Consensus       101 ~~p~~  105 (470)
                      +.|..
T Consensus        82 ~~~~~   86 (115)
T 2kat_A           82 AAQSR   86 (115)
T ss_dssp             HHHHH
T ss_pred             hcccc
Confidence            88753

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.6e-12  Score=88.08  Aligned_cols=57  Identities=26%  Similarity=0.368  Sum_probs=50.8

Q ss_pred             ccchhhhccCCC-CCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhh
Q psy16214        355 VKDYYKILGVTK-NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKR  420 (470)
Q Consensus       355 ~~~~y~~lg~~~-~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~  420 (470)
                      ..++|++||+.. .++.++|+++||++++++|||++.+         ..+|+.|++||++|+|+..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~---------~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS---------PFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC---------HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---------HHHHHHHHHHHHHHhhhhhc
Confidence            357899999998 7999999999999999999999654         34899999999999998765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.27  E-value=5.2e-11  Score=86.38  Aligned_cols=82  Identities=27%  Similarity=0.340  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.++..+|.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             Hc
Q psy16214         84 AL   85 (470)
Q Consensus        84 ~~   85 (470)
                      .+
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.24  E-value=7.3e-11  Score=90.01  Aligned_cols=83  Identities=17%  Similarity=0.120  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy16214        250 EAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK  329 (470)
Q Consensus       250 ~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  329 (470)
                      +|+..|++++..+|++    ..++..+|.++...|++++|+..|++++.++|+++.+++.+|.++..+|++++|+..|++
T Consensus         3 ~a~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTTCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5789999999999984    567999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCC
Q psy16214        330 IYKMDNS  336 (470)
Q Consensus       330 a~~~~p~  336 (470)
                      ++++.|.
T Consensus        79 al~~~~~   85 (115)
T 2kat_A           79 GLAAAQS   85 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHhccc
Confidence            9999885

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.24  E-value=3.6e-08  Score=95.19  Aligned_cols=293  Identities=10%  Similarity=-0.007  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHhhc---CCchhHHHHHHHHHHH----HcCChHHHHHHHHHHHhcCCCCHHHH
Q psy16214          4 AEKHKEDGNTQYKLK-QYSKALKCYSEAISV---CPNVAAYYGNRAACYM----MLGMYTYALDDAKLAVSLDPRFSKGL   75 (470)
Q Consensus         4 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~   75 (470)
                      ++.|..-.......+ ..+.....|+.++..   +|.+..+|......+.    ..++.+.+...|++++..-+....-+
T Consensus        47 ~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~l  126 (493)
T 2uy1_A           47 LDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSEL  126 (493)
T ss_dssp             HHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHH
Confidence            344444444444444 235567788888864   6778888887776654    34678899999999999643333322


Q ss_pred             HHHHHHHHH--------------cCChHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhcCC-------
Q psy16214         76 IRQIKCNIA--------------LGDAPTARSNLKALQELDPD-NPAIAQESKALETMAKNFEGASKAFEAND-------  133 (470)
Q Consensus        76 ~~la~~~~~--------------~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------  133 (470)
                      +..-..+..              ...+..|...+..+....+. +...|..             ...+ ..++       
T Consensus       127 w~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~-------------y~~~-E~~~~~~~~~~  192 (493)
T 2uy1_A          127 WKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAAR-------------LIDL-EMENGMKLGGR  192 (493)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHH-------------HHHH-HHTCTTCCCHH
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHH-------------HHHH-HhcCCccCcch
Confidence            221111111              12233334444443332221 1112211             1111 1121       


Q ss_pred             --HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHH----------------
Q psy16214        134 --YRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLC----------------  195 (470)
Q Consensus       134 --~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~----------------  195 (470)
                        ...+...|++++...|..+.+|...+..+...|+.+.|...|++++.. |.+...+...+..                
T Consensus       193 ~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~  271 (493)
T 2uy1_A          193 PHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSM  271 (493)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-
T ss_pred             hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence              345678999999999999999999999999999999999999999999 9887666544433                


Q ss_pred             ------------------------HhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHH
Q psy16214        196 ------------------------LYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG-KNQE  250 (470)
Q Consensus       196 ------------------------~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (470)
                                              ..+.++.+.|...|.++ ...+....++...            +...+..+ +.+.
T Consensus       272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~------------A~lE~~~~~d~~~  338 (493)
T 2uy1_A          272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYC------------AFIEYYATGSRAT  338 (493)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHH------------HHHHHHHHCCSHH
T ss_pred             hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHH------------HHHHHHHCCChHH
Confidence                                    11245566777777777 3222222233222            44444334 6999


Q ss_pred             HHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        251 AFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       251 A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                      |..+|+.+++..|+++    ..+...+......|+.+.|...|+++    +.....|......-...|+.+.+...++++
T Consensus       339 ar~ife~al~~~~~~~----~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~  410 (493)
T 2uy1_A          339 PYNIFSSGLLKHPDST----LLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQK  410 (493)
T ss_dssp             HHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999988854    34666778888999999999999997    456888888888888899999999989888


Q ss_pred             Hh
Q psy16214        331 YK  332 (470)
Q Consensus       331 ~~  332 (470)
                      ++
T Consensus       411 ~~  412 (493)
T 2uy1_A          411 MD  412 (493)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.23  E-value=2.2e-12  Score=104.63  Aligned_cols=67  Identities=25%  Similarity=0.485  Sum_probs=58.5

Q ss_pred             hcccccchhhhc------cCCC-CCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhc
Q psy16214        351 KRSEVKDYYKIL------GVTK-NASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY  423 (470)
Q Consensus       351 ~~~~~~~~y~~l------g~~~-~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~y  423 (470)
                      ......+||.+|      |+.. +++..+|+++||++++++|||++++        +..+|..|++||++|+||.+|..|
T Consensus         6 ~~~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~--------a~~~f~~i~~AY~vL~dp~~R~~Y   77 (181)
T 3uo3_A            6 QRRFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ--------GSEQSSTLNQAYHTLKDPLRRSQY   77 (181)
T ss_dssp             -CCCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS--------CSSGGGSHHHHHHHHHSHHHHHHH
T ss_pred             CCCCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc--------HHHHHHHHHHHHHHHcChHHHHHH
Confidence            345568999999      4554 8999999999999999999999875        456799999999999999999999


Q ss_pred             cC
Q psy16214        424 DR  425 (470)
Q Consensus       424 d~  425 (470)
                      |.
T Consensus        78 d~   79 (181)
T 3uo3_A           78 ML   79 (181)
T ss_dssp             HH
T ss_pred             HH
Confidence            96

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.21  E-value=2.2e-11  Score=90.13  Aligned_cols=92  Identities=15%  Similarity=0.069  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAA-YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIAL   85 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   85 (470)
                      .+.+|..++..|++++|+..|+++++.+|+++. +++.+|.++..+|++++|+..|+++++++|++..++..        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            467899999999999999999999999999999 99999999999999999999999999999999887744        


Q ss_pred             CChHHHHHHHHHHHhcCCCCh
Q psy16214         86 GDAPTARSNLKALQELDPDNP  106 (470)
Q Consensus        86 g~~~~A~~~~~~~l~~~p~~~  106 (470)
                      +.+.+|+..|++++..+|+++
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            567788888888888777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.17  E-value=3.1e-10  Score=82.18  Aligned_cols=83  Identities=24%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHH
Q psy16214         35 PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA  114 (470)
Q Consensus        35 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  114 (470)
                      |.++.+++.+|.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..++++++++|+++.++..++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHH
Q psy16214        115 LET  117 (470)
Q Consensus       115 ~~~  117 (470)
                      ++.
T Consensus        86 ~~~   88 (91)
T 1na3_A           86 AKQ   88 (91)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.13  E-value=4.1e-10  Score=83.32  Aligned_cols=73  Identities=15%  Similarity=-0.044  Sum_probs=64.9

Q ss_pred             cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q psy16214         33 VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN  105 (470)
Q Consensus        33 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  105 (470)
                      .+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|..+|++++|+..|++++++.|..
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4788999999999999999999999999999999999999999999999999999999999999999876644

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.13  E-value=2.3e-10  Score=84.72  Aligned_cols=68  Identities=15%  Similarity=0.131  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .+.+++.+|.++..+|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..|++++++.|.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            46779999999999999999999999999999999999999999999999999999999999999875

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.12  E-value=8e-10  Score=83.34  Aligned_cols=83  Identities=11%  Similarity=0.082  Sum_probs=74.3

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------hHHHH
Q psy16214         37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDN------PAIAQ  110 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~  110 (470)
                      ++..+..+|.+++..|++++|+..|+++++++|+++.++..+|.++..+|++++|+..++++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999999999998      55555


Q ss_pred             HHHHHHHHH
Q psy16214        111 ESKALETMA  119 (470)
Q Consensus       111 ~l~~~~~~~  119 (470)
                      .++.++...
T Consensus        83 ~~~~~~~~~   91 (111)
T 2l6j_A           83 RLELAQGAV   91 (111)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555554333

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.05  E-value=1.4e-11  Score=126.56  Aligned_cols=70  Identities=36%  Similarity=0.650  Sum_probs=40.4

Q ss_pred             cccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ...++|.+||+...++.++|+++||+++++||||++++.     ..++++|+.|++||++|+||.+|+.||..++
T Consensus        19 ~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~-----~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~   88 (780)
T 3apo_A           19 HDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNN-----PNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   88 (780)
T ss_dssp             ----CHHHHTCCTTCCHHHHHHHHCC----------------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred             CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC-----hHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence            457899999999999999999999999999999998642     3577899999999999999999999999654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.05  E-value=4.1e-09  Score=100.93  Aligned_cols=131  Identities=9%  Similarity=-0.051  Sum_probs=108.6

Q ss_pred             HHHHHhccCChHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----
Q psy16214        192 RGLCLYYDDKMDLAVNHFQLLLK-----LAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI-----  261 (470)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----  261 (470)
                      .+..+..+|++++|+..++++++     +.|+++.....+         .+.|.+|..+|+|++|+.++++++.+     
T Consensus       315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~---------~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~l  385 (490)
T 3n71_A          315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLL---------SIASEVLSYLQAYEEASHYARRMVDGYMKLY  385 (490)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHH---------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence            34456789999999999999997     346666554443         33399999999999999999999965     


Q ss_pred             cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        262 DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK-----DPNY---LKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       262 ~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      .|+++. .+..+.++|.+|..+|++++|+..+++|+.+     .|++   ..+...++.++..++.+++|...|+++.+
T Consensus       386 G~~Hp~-~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          386 HHNNAQ-LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             CTTCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555 5889999999999999999999999999976     4555   55667899999999999999999999865

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.04  E-value=2.8e-09  Score=102.07  Aligned_cols=104  Identities=14%  Similarity=0.093  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCC
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRF   71 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~   71 (470)
                      ......+..+..+|+|++|+.+|++++.+        +|....++.++|.+|..+|+|++|+.++++++.+     .|++
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34556677788999999999999999975        3445778999999999999999999999999986     4554


Q ss_pred             ---HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCChHH
Q psy16214         72 ---SKGLIRQIKCNIALGDAPTARSNLKALQEL-----DPDNPAI  108 (470)
Q Consensus        72 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~  108 (470)
                         ...+.++|.+|..+|++++|+..+++++.+     .|+++..
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~  434 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT  434 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence               557889999999999999999999999863     4555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.03  E-value=4.5e-10  Score=82.91  Aligned_cols=87  Identities=15%  Similarity=0.115  Sum_probs=69.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSK-LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA  316 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  316 (470)
                      .|..+...|++++|+..|+++++.+|++    .. ++..+|.++..+|++++|+..|+++++++|++..++..       
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------   74 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------   74 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH-------
Confidence            4788888888888888888888888884    45 68888888888888888888888888888888877644       


Q ss_pred             hCCHHHHHHHHHHHHhcCCC
Q psy16214        317 LGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       317 ~g~~~~A~~~~~~a~~~~p~  336 (470)
                       +.+.+|+..|+++...+|+
T Consensus        75 -~~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           75 -KMVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             -HHHHHHHHHHCCTTHHHHC
T ss_pred             -HHHHHHHHHHHHHhccCcc
Confidence             5667777777777777665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=99.00  E-value=5.4e-08  Score=87.80  Aligned_cols=155  Identities=13%  Similarity=0.045  Sum_probs=111.2

Q ss_pred             HhhcCCchhHH--HHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC
Q psy16214         30 AISVCPNVAAY--YGNRAACYMMLGM---YTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPD  104 (470)
Q Consensus        30 al~~~p~~~~~--~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  104 (470)
                      +....|.++.+  ++.+|..++..+.   +.+|+.+|+++++++|+++.++..++.+|...           .  ...|.
T Consensus       186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-----------~--~~~~~  252 (372)
T 3ly7_A          186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-----------H--SQHPL  252 (372)
T ss_dssp             HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------H--HHSCC
T ss_pred             HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------h--ccCCC
Confidence            33445555444  4566777766544   57888888999999998888888888887711           0  01111


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214        105 NPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ  184 (470)
Q Consensus       105 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  184 (470)
                      .......                      ...++.. ..++...|.++.++..++..+...|++++|+..+++++.++|+
T Consensus       253 ~~~~~~~----------------------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s  309 (372)
T 3ly7_A          253 DEKQLAA----------------------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS  309 (372)
T ss_dssp             CHHHHHH----------------------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             chhhHHH----------------------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            1111000                      0112221 1234667899999999999999899999999999999999974


Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHH
Q psy16214        185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK  221 (470)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  221 (470)
                       ..++..+|.++...|++++|+..|.+++.++|..+.
T Consensus       310 -~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          310 -WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence             778889999999999999999999999999998764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.98  E-value=4.5e-08  Score=84.56  Aligned_cols=182  Identities=7%  Similarity=-0.068  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---------------------CHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        137 AMFYLDRAMDQGVASKTYKLMKAECLAHLN---------------------RLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       137 A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---------------------~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                      .+..++-++..+|++...+...+..|..-.                     ++..|..+|.++..        |-.++.+
T Consensus        51 ~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~--------y~~raL~  122 (301)
T 3u64_A           51 VLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR--------YALSSLE  122 (301)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH--------HHHHHHH
Confidence            466778888999999987776666554321                     13344555554433        1112221


Q ss_pred             HhccCChHHHHH-----HHHHHH-hhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhcc
Q psy16214        196 LYYDDKMDLAVN-----HFQLLL-KLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG------KNQEAFDIYTEALKIDA  263 (470)
Q Consensus       196 ~~~~g~~~~A~~-----~~~~~l-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~A~~~~~~al~~~p  263 (470)
                      . ....+.+++.     -+..++ +.+|++...+.....+..       +.+-...+      ....|...++++++++|
T Consensus       123 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~s-------s~a~~~~gg~~Al~~l~~A~a~lerAleLDP  194 (301)
T 3u64_A          123 T-AYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYV-------AAFALTPLGSALPDTVHAAVMMLERACDLWP  194 (301)
T ss_dssp             H-HSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHH-------HHHTTSCTTSCCHHHHHHHHHHHHHHHHHCT
T ss_pred             H-hCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHH-------HHHhcCCCChHHHHhHHHHHHHHHHHHHhCC
Confidence            1 1122222221     223333 466777777665521110       11111122      35789999999999999


Q ss_pred             cCccchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCC
Q psy16214        264 RNININSKLLHNRATVLFKM-----GKYNEAIADCTLALEKDPNY-LKALSRRCKCFHA-LGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       264 ~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +..  ...+|..+|.+|...     |+.++|..+|+++++++|+. ..+++.+|..+.. .|++++|...+++++...|.
T Consensus       195 ~~~--~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          195 SYQ--EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             THH--HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             Ccc--cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            843  356899999999996     99999999999999999975 9999999999988 59999999999999999876

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.97  E-value=3.4e-08  Score=89.13  Aligned_cols=75  Identities=11%  Similarity=0.069  Sum_probs=66.7

Q ss_pred             hhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhH
Q psy16214        260 KIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSREN  339 (470)
Q Consensus       260 ~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~  339 (470)
                      ...|.    .+.++..++.++...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|....
T Consensus       271 ~~~~~----~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          271 PELNN----LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             GGGTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             ccCCc----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            44555    5677888999999999999999999999999975 778899999999999999999999999999998654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.94  E-value=9e-08  Score=82.68  Aligned_cols=29  Identities=10%  Similarity=-0.075  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214         56 YALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus        56 ~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      -.+..++-.+..+|++.......|..|..
T Consensus        50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~   78 (301)
T 3u64_A           50 LVLKVYEALHLQNPAHRGLSLAVGRLYIM   78 (301)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            34556677777788887766666666553

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.93  E-value=1.8e-08  Score=72.67  Aligned_cols=75  Identities=13%  Similarity=-0.052  Sum_probs=68.6

Q ss_pred             CCchhHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214         34 CPNVAAYYGNRAACYMMLGM---YTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI  108 (470)
Q Consensus        34 ~p~~~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  108 (470)
                      +|+++..+..+|.+++..++   .++|...++++++++|+++.+++.+|..+...|+|++|+.+++++++.+|.++..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~   79 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR   79 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            68899999999999987766   7999999999999999999999999999999999999999999999999985543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.92  E-value=3.7e-08  Score=77.45  Aligned_cols=112  Identities=12%  Similarity=-0.015  Sum_probs=99.1

Q ss_pred             CChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHH
Q psy16214        200 DKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATV  279 (470)
Q Consensus       200 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~  279 (470)
                      +++++|+.+|+++.+......  .  +            |.++...+..++|+.+|+++.+..      .+.+++++|.+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a--~--l------------g~~y~~g~~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~   66 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFG--C--L------------SLVSNSQINKQKLFQYLSKACELN------SGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTH--H--H------------HHHTCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhh--h--H------------HHHHHcCCCHHHHHHHHHHHHcCC------CHHHHHHHHHH
Confidence            468899999999998764333  2  5            999999999999999999999873      45789999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCC
Q psy16214        280 LFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       280 ~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p  335 (470)
                      |..    .+++++|+.+|+++.+.  .++.+++++|.+|..    .+++++|+.+|+++.+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999    89999999999999987  779999999999999    9999999999999999864

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.91  E-value=4.1e-08  Score=77.18  Aligned_cols=120  Identities=9%  Similarity=-0.043  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy16214        166 NRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV-  244 (470)
Q Consensus       166 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-  244 (470)
                      +++++|+.+|+++.+..+  +.+.  +|.+|...+..++|+.+|+++.+.  .++.+...+            |.+|.. 
T Consensus         9 ~d~~~A~~~~~~aa~~g~--~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L------------g~~y~~G   70 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE--MFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL------------GDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC--TTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH------------HHHHHHC
T ss_pred             cCHHHHHHHHHHHHcCCC--Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH------------HHHHHcC
Confidence            356777777777777653  3333  777777777777788888887775  455666666            777777 


Q ss_pred             ---cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy16214        245 ---AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRC  311 (470)
Q Consensus       245 ---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la  311 (470)
                         .+++++|+.+|+++.+..      .+.+++++|.+|..    .+++++|+.+|+++.+.  .++.+...++
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             CCCCccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence               778888888888887652      34668888888888    78888888888888876  3445544443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.84  E-value=3.6e-08  Score=76.81  Aligned_cols=97  Identities=10%  Similarity=-0.003  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCChHHHHH
Q psy16214         19 QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG---MYTYALDDAKLAVSLD-P-RFSKGLIRQIKCNIALGDAPTARS   93 (470)
Q Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~   93 (470)
                      ....+.+.|.+.+..+|.+..+.+++|.++.+.+   +.++++..++.+++.+ | ...++++.+|..++++|+|++|..
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            4567788888888888999999999999999998   6779999999999998 7 568999999999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHH
Q psy16214         94 NLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        94 ~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      +++++++++|++..+......+
T Consensus        93 y~~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           93 YVRGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999999999887655444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.78  E-value=6.8e-08  Score=71.67  Aligned_cols=78  Identities=19%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC-------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKG   74 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~   74 (470)
                      .+++..+.+|..++..++|..|+..|++|++..       +..+.++..+|.+++.+|+++.|+..++++++++|++..+
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            367888999999999999999999999998753       3457788888888888888888888888888888888877


Q ss_pred             HHHHH
Q psy16214         75 LIRQI   79 (470)
Q Consensus        75 ~~~la   79 (470)
                      ..+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            76665

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.78  E-value=1.3e-07  Score=68.23  Aligned_cols=70  Identities=19%  Similarity=0.161  Sum_probs=32.7

Q ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCC
Q psy16214        149 VASKTYKLMKAECLAHLNR---LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD  218 (470)
Q Consensus       149 p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  218 (470)
                      |+++.++..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|++++|+.++++++..+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4444444444444443333   344444444444444444444444444444444444444444444444444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.78  E-value=7.4e-08  Score=75.05  Aligned_cols=95  Identities=20%  Similarity=0.225  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHhhcC-C-CChHHHHHHHHHHhccCChHHHHHHH
Q psy16214        135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLN---RLQEAQEIANSILATD-K-QNPDAVFVRGLCLYYDDKMDLAVNHF  209 (470)
Q Consensus       135 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~  209 (470)
                      ..+...|.+.+..+|.+..+.+.+|.++.+.+   +.++++.+++.+++.+ | .+.++++++|..+++.++|++|+.++
T Consensus        15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            44566777778888999999999999999998   6779999999999998 7 56899999999999999999999999


Q ss_pred             HHHHhhCCChHHHHHHHHHH
Q psy16214        210 QLLLKLAPDHAKAKETYKRA  229 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~  229 (470)
                      +++++.+|++..+......+
T Consensus        95 ~~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           95 RGLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHH
Confidence            99999999999887765443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.71  E-value=9.7e-08  Score=89.94  Aligned_cols=102  Identities=12%  Similarity=0.051  Sum_probs=85.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCC---
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRF---   71 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~---   71 (470)
                      ...+......|+|++|+..|++++.+        +|.-..++.++|.+|..+|+|++|+.++++++.+     .|++   
T Consensus       302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  381 (433)
T 3qww_A          302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNV  381 (433)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred             HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            34445555678999999999999975        3344678999999999999999999999999986     4444   


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCChHHH
Q psy16214         72 SKGLIRQIKCNIALGDAPTARSNLKALQEL-----DPDNPAIA  109 (470)
Q Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~  109 (470)
                      ...+.++|.+|..+|++++|+..|++++++     .|+++.+.
T Consensus       382 a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          382 ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            557899999999999999999999999974     67777654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.70  E-value=1.3e-07  Score=89.05  Aligned_cols=98  Identities=11%  Similarity=0.035  Sum_probs=83.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh-----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--------DPN  302 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~  302 (470)
                      .+........|+|++|+..+++++.+     .|+++. ...++.++|.+|..+|+|++|+.++++++.+        +|+
T Consensus       302 le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~-~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  380 (433)
T 3qww_A          302 IEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVY-MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN  380 (433)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             HHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            33344555678999999999999965     455655 4789999999999999999999999999976        344


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       303 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      -...+.++|.+|..+|++++|+..|++|+++.
T Consensus       381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~  412 (433)
T 3qww_A          381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIM  412 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            46779999999999999999999999999874

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.66  E-value=2.6e-07  Score=87.19  Aligned_cols=95  Identities=15%  Similarity=0.118  Sum_probs=82.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhh-----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK--------DPNYL  304 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~  304 (470)
                      ....+..+|++++|+..+++++.+     .|+++. ...++.++|.+|..+|+|++|+.++++++.+        +|...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~-~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY-QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH-HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            355567889999999999999965     355554 5789999999999999999999999999976        33446


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        305 KALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       305 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      ..+.++|.+|..+|++++|+..|++|+++
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            67899999999999999999999999987

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.65  E-value=3.8e-07  Score=86.08  Aligned_cols=108  Identities=13%  Similarity=0.040  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhc--------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCC-
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISV--------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRF-   71 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~-   71 (470)
                      ........+..+|+|++|+..+++++.+        +|....++.++|.+|..+|+|++|+.++++++.+     .|++ 
T Consensus       289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence            4455566778899999999999999975        2334678999999999999999999999999975     3444 


Q ss_pred             --HHHHHHHHHHHHHcCChHHHHHHHHHHHh-----cCCCChHHHHHHH
Q psy16214         72 --SKGLIRQIKCNIALGDAPTARSNLKALQE-----LDPDNPAIAQESK  113 (470)
Q Consensus        72 --~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~p~~~~~~~~l~  113 (470)
                        ...+.++|.+|..+|++++|+..++++++     +.|+++.....+.
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~  417 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL  417 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence              55788999999999999999999999997     4688887654433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.54  E-value=1.2e-06  Score=64.82  Aligned_cols=77  Identities=18%  Similarity=-0.068  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHH
Q psy16214         37 VAAYYGNRAACYMMLGMYTYALDDAKLAVSLD-------PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIA  109 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  109 (470)
                      ++.-.+.+|..++..++|..|+..++.|++..       +..+.++..+|.++..+|+++.|+..+++++++.|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            35667899999999999999999999999863       34578899999999999999999999999999999998886


Q ss_pred             HHHH
Q psy16214        110 QESK  113 (470)
Q Consensus       110 ~~l~  113 (470)
                      ..+.
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            6655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.34  E-value=0.00016  Score=69.77  Aligned_cols=174  Identities=11%  Similarity=0.068  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcC-CCChHHHHHHHHHHhccC---------ChHHHHHHHHHHHhh--CCChHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATD-KQNPDAVFVRGLCLYYDD---------KMDLAVNHFQLLLKL--APDHAK  221 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~l~~--~p~~~~  221 (470)
                      .+......+.+.|+.++|+.+|+++.... +-+...|..+-.++...+         ..+.|...|++....  .|+.. 
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~-  106 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA-  106 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH-
Confidence            34556678889999999999999988764 234566666666665444         367899999887763  45543 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy16214        222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKI--DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK  299 (470)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (470)
                      .+..+            ...+.+.|++++|..++++....  .|+     ...|..+-..+.+.|+.++|.+.+++..+.
T Consensus       107 tyn~l------------I~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~  169 (501)
T 4g26_A          107 TFTNG------------ARLAVAKDDPEMAFDMVKQMKAFGIQPR-----LRSYGPALFGFCRKGDADKAYEVDAHMVES  169 (501)
T ss_dssp             HHHHH------------HHHHHHHTCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCc-----cceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            34444            78888999999999999998764  343     567888999999999999999999999876


Q ss_pred             C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCChhHHHHHHH
Q psy16214        300 D-PNYLKALSRRCKCFHALGQYKECVIDAEKIYKM--DNSRENHNFLEE  345 (470)
Q Consensus       300 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~l~~  345 (470)
                      . .-+..+|..+-.++.+.|+.++|.+.+++..+.  .|+......|..
T Consensus       170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~  218 (501)
T 4g26_A          170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE  218 (501)
T ss_dssp             TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence            3 234788999999999999999999999998764  566555444433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.33  E-value=7.4e-06  Score=61.32  Aligned_cols=100  Identities=10%  Similarity=0.016  Sum_probs=85.5

Q ss_pred             hcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCChHH
Q psy16214         16 KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTY---ALDDAKLAVSLD-P-RFSKGLIRQIKCNIALGDAPT   90 (470)
Q Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~   90 (470)
                      .......+...|.+.+..++.+..+.+++|.++.+..+...   ++..++..+..+ | ..-+.++.+|..++++|+|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            33455677788888888788889999999999999988776   999999999877 5 567899999999999999999


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         91 ARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        91 A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      |..+++.+++..|+|..+......+
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999887554444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.29  E-value=1.2e-05  Score=60.17  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhhcC-C-CChHHHHHHHHHHhccCChHHHHHHH
Q psy16214        135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQE---AQEIANSILATD-K-QNPDAVFVRGLCLYYDDKMDLAVNHF  209 (470)
Q Consensus       135 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~  209 (470)
                      ..+...|.+.+..++.+..+.+.+|.++....+...   ++.+++.+++.+ | ..-+.++.+|..+++.|+|++|+.++
T Consensus        18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~   97 (126)
T 1nzn_A           18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   97 (126)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            445666777777788999999999999999988776   999999999977 4 45679999999999999999999999


Q ss_pred             HHHHhhCCChHHHHHHHHHH
Q psy16214        210 QLLLKLAPDHAKAKETYKRA  229 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~  229 (470)
                      +.+++..|++..+......+
T Consensus        98 ~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           98 RGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHH
Confidence            99999999999887765333

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.14  E-value=2.6e-06  Score=55.47  Aligned_cols=51  Identities=20%  Similarity=0.184  Sum_probs=42.0

Q ss_pred             cchhhhccCCCC---CCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcC
Q psy16214        356 KDYYKILGVTKN---ASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS  415 (470)
Q Consensus       356 ~~~y~~lg~~~~---~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~  415 (470)
                      .+.+.+||+...   ++.++|+++||++....|||+..+         --....|++|.++|.
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS---------~yl~~ki~~Ake~l~   57 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS---------FYLQSKVYRAAERLK   57 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHHH
Confidence            467899999998   899999999999999999999766         233556777777663

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.11  E-value=2.7e-05  Score=60.99  Aligned_cols=109  Identities=13%  Similarity=0.039  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCC
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---------AAYYGNRAACYMMLGMYTYALDDAKLAVSL------DPR   70 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~   70 (470)
                      .+++....++..|.|+.|+-....++....++         ..++..+|.+++..++|..|...|++++..      .|.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46778889999999999999999987664332         348899999999999999999999998764      111


Q ss_pred             -------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         71 -------------------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        71 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                                         ..+..+.+|.||..++++.+|+..++.+-. ....+.+...|+.+
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL  164 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence                               126889999999999999999999887532 22455666556554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.06  E-value=0.0013  Score=63.38  Aligned_cols=166  Identities=10%  Similarity=-0.075  Sum_probs=86.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHhcC-CCChHHH
Q psy16214         42 GNRAACYMMLGMYTYALDDAKLAVSL--DPRFSKGLIRQIKCNIALGD---------APTARSNLKALQELD-PDNPAIA  109 (470)
Q Consensus        42 ~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~~l~~~-p~~~~~~  109 (470)
                      ..+-..+.+.|+.++|+..|++..+.  .| +..+|..+-.++...+.         .++|.+.|.+..... +-+...+
T Consensus        30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           30 KQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            33344555556666666666555543  22 33444444444433322         455555655554421 1122333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC-CChH
Q psy16214        110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG-VASKTYKLMKAECLAHLNRLQEAQEIANSILATDK-QNPD  187 (470)
Q Consensus       110 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~  187 (470)
                      ..+...            +...|++++|..+++++.+.. ..+...+..+...+.+.|+.++|.++++...+..- -+..
T Consensus       109 n~lI~~------------~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~  176 (501)
T 4g26_A          109 TNGARL------------AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP  176 (501)
T ss_dssp             HHHHHH------------HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHH------------HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence            333333            334455555666665555442 22444555566666777777777777776665431 2455


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHh--hCCChH
Q psy16214        188 AVFVRGLCLYYDDKMDLAVNHFQLLLK--LAPDHA  220 (470)
Q Consensus       188 ~~~~la~~~~~~g~~~~A~~~~~~~l~--~~p~~~  220 (470)
                      .+..+..++...|+.++|...+++.-+  ..|+..
T Consensus       177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            666666677777777777777766654  345443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.98  E-value=0.0002  Score=56.07  Aligned_cols=108  Identities=19%  Similarity=0.255  Sum_probs=83.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcccCc-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C----
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDARNI-----NINSKLLHNRATVLFKMGKYNEAIADCTLALEKD------P----  301 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p----  301 (470)
                      +....++..+.|+.|+-....++.+..+++     .....++..+|.+++..++|..|...|+++++..      |    
T Consensus        25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~  104 (167)
T 3ffl_A           25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP  104 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            447788899999999999999887654433     3356788999999999999999999999997651      1    


Q ss_pred             ---------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHH
Q psy16214        302 ---------------NYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLE  344 (470)
Q Consensus       302 ---------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~  344 (470)
                                     .+.++.+.++.||.+++++++|+..++.+-....++.+.-.|.
T Consensus       105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~La  162 (167)
T 3ffl_A          105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLA  162 (167)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHH
T ss_pred             cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHH
Confidence                           1136889999999999999999999887544443455544443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.98  E-value=0.00015  Score=55.49  Aligned_cols=53  Identities=13%  Similarity=0.030  Sum_probs=27.5

Q ss_pred             CCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                      ++.++|.+.|+.++.+...    .+.+|...|..-.++|+...|...+.+++.+.|.
T Consensus        74 ~D~d~aR~vy~~a~~~hKk----FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKK----FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTT----BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            4555555555555544211    2455555555555555555555555555555554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.90  E-value=0.00046  Score=52.80  Aligned_cols=106  Identities=17%  Similarity=0.015  Sum_probs=91.3

Q ss_pred             ccHHHHHHHHHHHHhcCCH------HHHHHHHHHHhhcCCch--------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214          2 LSAEKHKEDGNTQYKLKQY------SKALKCYSEAISVCPNV--------AAYYGNRAACYMMLGMYTYALDDAKLAVSL   67 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   67 (470)
                      .+++.|..-....-..|+.      ++-++.|++|+..-|..        +..|...|.. ...++.++|...|+.++++
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH
Confidence            3677888888888888998      89999999999877653        4556666644 5679999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214         68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI  108 (470)
Q Consensus        68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  108 (470)
                      ...++.+|...|..-.++|+...|...+.+++...|...+.
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            88899999999999999999999999999999999987765

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.76  E-value=0.0011  Score=49.74  Aligned_cols=82  Identities=11%  Similarity=0.037  Sum_probs=67.5

Q ss_pred             hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHH
Q psy16214        269 NSKLLHNRATVLFKMGKY---NEAIADCTLALEKDPN-YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFL  343 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l  343 (470)
                      ...+.++.|+++.+..+.   .+++..++..+..+|. .-+.++.+|..+.++|+|++|.++.+.++++.|+ ..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            567899999999998864   5799999999998884 4889999999999999999999999999999998 4444444


Q ss_pred             HHHHHHh
Q psy16214        344 EEAKRLL  350 (470)
Q Consensus       344 ~~~~~~~  350 (470)
                      ..++..+
T Consensus       119 ~~Ie~ki  125 (134)
T 3o48_A          119 SMVEDKI  125 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444333

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.71  E-value=0.0018  Score=49.26  Aligned_cols=80  Identities=10%  Similarity=0.083  Sum_probs=70.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHhhcCCC-ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHH
Q psy16214        149 VASKTYKLMKAECLAHLNRL---QEAQEIANSILATDKQ-NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKE  224 (470)
Q Consensus       149 p~~~~~~~~~a~~~~~~~~~---~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  224 (470)
                      .-+....+++|.++....+.   .+++.+++.+++..|. .-+.++.+|..++++|+|++|..+.+.+|+..|++..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            56778899999999998765   4799999999998885 5679999999999999999999999999999999988876


Q ss_pred             HHHH
Q psy16214        225 TYKR  228 (470)
Q Consensus       225 ~~~~  228 (470)
                      ....
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6533

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.66  E-value=0.0063  Score=55.90  Aligned_cols=199  Identities=14%  Similarity=0.030  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC
Q psy16214         73 KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQ---GV  149 (470)
Q Consensus        73 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p  149 (470)
                      .+.+.+|.+|...|++++-.+.+......-+.-+.+                           ++.+..+.++..   .|
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ka---------------------------k~~k~v~~l~~~~~~~~   72 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKA---------------------------KAAKLVRSLVDMFLDMD   72 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHH---------------------------HHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchH---------------------------HHHHHHHHHHHHHhcCC
Confidence            456788888888888888888887765544333222                           122233333333   23


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH------HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD------AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      +....                -++.+..+++...+.-.      +-..+|.+|+..|++.+|.+.+.++++........ 
T Consensus        73 ~~~~~----------------~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~-  135 (394)
T 3txn_A           73 AGTGI----------------EVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDK-  135 (394)
T ss_dssp             CCHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCT-
T ss_pred             CcHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc-
Confidence            33222                22223333322111111      22367888888888888888888777632221100 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---ccCccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q psy16214        224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID---ARNININSKLLHNRATVLF-KMGKYNEAIADCTLALEK  299 (470)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~  299 (470)
                      ..     .+.-+.....++...+++.++...+.++....   +.+|...+.+...-|..+. ..++|..|...|-+++..
T Consensus       136 ~~-----llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          136 NL-----LVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             hh-----HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            11     11222334888999999999999999987553   2445556788888899999 899999999999998754


Q ss_pred             CCCC-----HHHHHHHHHHHHHhCCH
Q psy16214        300 DPNY-----LKALSRRCKCFHALGQY  320 (470)
Q Consensus       300 ~p~~-----~~~~~~la~~~~~~g~~  320 (470)
                      ....     ..+...++.|-+..++.
T Consensus       211 f~~~~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          211 FDSVDSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             ccccccHHHHHHHHHHHHHHHHcCCH
Confidence            3221     33455566666666653

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.64  E-value=0.00076  Score=50.56  Aligned_cols=82  Identities=12%  Similarity=-0.036  Sum_probs=69.9

Q ss_pred             hhHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214         37 VAAYYGNRAACYMMLGMY---TYALDDAKLAVSLDPR-FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES  112 (470)
Q Consensus        37 ~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  112 (470)
                      ++.+.++.|.++.+..+.   .+++..++..+..+|. .-+.++.+|..+.++|+|++|..+.+.+++..|+|..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            578889999999988764   5789999999988884 478899999999999999999999999999999999988776


Q ss_pred             HHHHHH
Q psy16214        113 KALETM  118 (470)
Q Consensus       113 ~~~~~~  118 (470)
                      ..+...
T Consensus       119 ~~Ie~k  124 (134)
T 3o48_A          119 SMVEDK  124 (134)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.64  E-value=0.0022  Score=48.73  Aligned_cols=81  Identities=11%  Similarity=-0.047  Sum_probs=69.7

Q ss_pred             CchhHHHHHHHHHHHHcCCh---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHH
Q psy16214         35 PNVAAYYGNRAACYMMLGMY---TYALDDAKLAVSLDPR-FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQ  110 (470)
Q Consensus        35 p~~~~~~~~~a~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  110 (470)
                      +-++.+.++.|.++....+.   .+++..++..+...|. .-+.++.+|..++++|+|++|..+.+.+++..|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45688999999999998764   5799999999998884 5778999999999999999999999999999999998765


Q ss_pred             HHHHH
Q psy16214        111 ESKAL  115 (470)
Q Consensus       111 ~l~~~  115 (470)
                      ....+
T Consensus       116 Lk~~I  120 (144)
T 1y8m_A          116 LKSMV  120 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=97.50  E-value=0.057  Score=52.99  Aligned_cols=306  Identities=8%  Similarity=-0.057  Sum_probs=156.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH--
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN--   82 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--   82 (470)
                      ...+..+...+..|++..+..+... +.-+|-.  .|.........++..  .-..+...+...|+.+..-.......  
T Consensus         7 ~~~~~~a~~a~~~~~~~~~~~l~~~-l~~~pL~--~yl~y~~l~~~l~~~--~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~   81 (618)
T 1qsa_A            7 RSRYAQIKQAWDNRQMDVVEQMMPG-LKDYPLY--PYLEYRQITDDLMNQ--PAVTVTNFVRANPTLPPARTLQSRFVNE   81 (618)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGG-GTTSTTH--HHHHHHHHHHTGGGC--CHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh-hcCCCcH--HHHHHHHHHhCcccC--CHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence            4567788888999998877766443 2334432  222222222222211  11144455666777765544333332  


Q ss_pred             -HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHhcC--CHHHHHHHHHHHHHhCCCCHHHH
Q psy16214         83 -IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGA----SKAFEAN--DYRTAMFYLDRAMDQGVASKTYK  155 (470)
Q Consensus        83 -~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~--~~~~A~~~~~~~l~~~p~~~~~~  155 (470)
                       ...+++..-+..+..    .|.+......+.......|....|    ......+  ..+.+-.++....+...-....+
T Consensus        82 l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~  157 (618)
T 1qsa_A           82 LARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY  157 (618)
T ss_dssp             HHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHH
Confidence             234455544443332    255555544444443333322222    2222222  23344444444444444444445


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH-------------hhcCCCChH-------------HHHHHHHHHhccCChHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSI-------------LATDKQNPD-------------AVFVRGLCLYYDDKMDLAVNHF  209 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~-------------l~~~p~~~~-------------~~~~la~~~~~~g~~~~A~~~~  209 (470)
                      ..+....+..|+...|..+...+             +..+|.+..             .....+.......+.+.|...+
T Consensus       158 ~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~  237 (618)
T 1qsa_A          158 LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMI  237 (618)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            55666666666666655544432             111222211             1122233334445667777777


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214        210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA  289 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A  289 (470)
                      .......+-+.......        ....+..+...+...++...+.+.....+++    . +...++...++.|++..|
T Consensus       238 ~~~~~~~~~~~~~~~~~--------~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          238 PSLAQAQQLNEDQIQEL--------RDIVAWRLMGNDVTDEQAKWRDDAIMRSQST----S-LIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             HHHHHHTTCCHHHHHHH--------HHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH----H-HHHHHHHHHHHHTCHHHH
T ss_pred             HhhhhccCCCHHHHHHH--------HHHHHHHHHHcCCChHHHHHHHhccccCCCh----H-HHHHHHHHHHHCCCHHHH
Confidence            66543322222211111        0001333344453567777777765443331    1 122333344567999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       290 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      ..++...-...+......+.+|+++..+|+.++|...|+++..
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            9999875554445688899999999999999999999999886

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.27  E-value=0.042  Score=42.83  Aligned_cols=190  Identities=15%  Similarity=0.176  Sum_probs=118.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHH
Q psy16214        128 AFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVN  207 (470)
Q Consensus       128 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~  207 (470)
                      .++-.+|+.++-.-.-+   .|..++....++..+...|.|..++-.+..     -+...+.+..+.|+....++..|+.
T Consensus        12 s~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~   83 (242)
T 3kae_A           12 SIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIK   83 (242)
T ss_dssp             HHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445666665433322   344446777788899999999999887754     3456788888999999999999999


Q ss_pred             HHHHHHh--h--C-------------CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchH
Q psy16214        208 HFQLLLK--L--A-------------PDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININS  270 (470)
Q Consensus       208 ~~~~~l~--~--~-------------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  270 (470)
                      .++..+.  .  +             |.+.+....+           .|.++.+.|+.++|+.++.......|--+.+..
T Consensus        84 ~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l-----------~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn  152 (242)
T 3kae_A           84 SLESILEGKVERDPDVDARIQEMFVDPGDEEFFESL-----------LGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN  152 (242)
T ss_dssp             HHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHhcccccCcccccccceeeeccchHHHHHHH-----------HHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence            9999983  2  2             2333322221           389999999999999999998877665222111


Q ss_pred             HHHHH-------------HHHHHHHcCCHHHHH--------HHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHH
Q psy16214        271 KLLHN-------------RATVLFKMGKYNEAI--------ADCTLALEKDPNYLK-ALSRRCKCFHALGQYKECVIDAE  328 (470)
Q Consensus       271 ~~~~~-------------la~~~~~~g~~~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~  328 (470)
                      .++.+             .+.--.+...+....        ...++....-|.... .....+..|..+|..++...+|.
T Consensus       153 liyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~  232 (242)
T 3kae_A          153 LLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFE  232 (242)
T ss_dssp             HHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHH
Confidence            11111             000000000011111        222233333455432 23456788999999999999999


Q ss_pred             HHHhcCCC
Q psy16214        329 KIYKMDNS  336 (470)
Q Consensus       329 ~a~~~~p~  336 (470)
                      .+-+.+|.
T Consensus       233 ~lR~kDP~  240 (242)
T 3kae_A          233 LVRRKDPM  240 (242)
T ss_dssp             HHHHHSTT
T ss_pred             HHHhcCCC
Confidence            99998884

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=97.23  E-value=0.06  Score=47.57  Aligned_cols=64  Identities=11%  Similarity=0.038  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------H-H---hCCCCHHHHHHHHH-HHHHhCCHHHHHHHHH
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLA---------------L-E---KDPNYLKALSRRCK-CFHALGQYKECVIDAE  328 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~a---------------l-~---~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~  328 (470)
                      .+.++..+|..+.+.+++.+|..+|-..               . +   -.|.....+..++. .|+.+++...|...+.
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~  212 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKD  212 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3455666666666666666666655211               0 1   12333555555554 5568899999888887


Q ss_pred             HHHh
Q psy16214        329 KIYK  332 (470)
Q Consensus       329 ~a~~  332 (470)
                      ...+
T Consensus       213 ~f~~  216 (312)
T 2wpv_A          213 IFLE  216 (312)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=97.12  E-value=0.041  Score=42.88  Aligned_cols=97  Identities=12%  Similarity=-0.034  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHh--c---------------C
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVS--L---------------D   68 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~---------------~   68 (470)
                      .-..++..++-.|.|..|+-++...     +...+.+..+.||..+++|..|+..++..++  .               +
T Consensus        35 Y~lL~~I~LyyngEY~R~Lf~L~~l-----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd  109 (242)
T 3kae_A           35 YRMLMSIVLYLNGEYTRALFHLHKL-----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD  109 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTC-----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred             HHhhhhhhhhhcchHhHHHHHHHhc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence            3456788889999999988877543     4577788889999999999999999999983  2               3


Q ss_pred             CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH
Q psy16214         69 PRFSK-GLIRQIKCNIALGDAPTARSNLKALQELDPDNPA  107 (470)
Q Consensus        69 p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  107 (470)
                      |.+.+ .+..+|.++.+.|+.++|+.++......+|--+.
T Consensus       110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~  149 (242)
T 3kae_A          110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP  149 (242)
T ss_dssp             TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred             cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence            33433 4567899999999999999999998888775443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=97.05  E-value=0.15  Score=45.25  Aligned_cols=64  Identities=13%  Similarity=0.172  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHH-------HH---------HhCCCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTL-------AL---------EKDPNYLKALSRRCK-CFHALGQYKECVIDAEKIY  331 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~-------al---------~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~a~  331 (470)
                      .+.++..+|..+.+.+++.+|..+|--       .+         +..|.....+..++. .|+.+++...|...+....
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            345566667777766666666655420       00         113445566666554 4578899998888666555


Q ss_pred             h
Q psy16214        332 K  332 (470)
Q Consensus       332 ~  332 (470)
                      +
T Consensus       215 ~  215 (336)
T 3lpz_A          215 S  215 (336)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=97.04  E-value=0.11  Score=47.67  Aligned_cols=177  Identities=10%  Similarity=-0.059  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH-----HHHHHHHhc-cCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV-----FVRGLCLYY-DDKMDLAVNHFQLLLKLAPDHAKAKETYK  227 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  227 (470)
                      +...+|.+|...|++++-.+++......-+.-+.+.     ..+-..+.. -+..+.-+..+..+++...+....+..  
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr--   98 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR--   98 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            456789999999999998888887655444333222     222222222 244455555555555533222222210  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC
Q psy16214        228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKD---PN  302 (470)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~  302 (470)
                          .......|..|+..|+|.+|.+.+.+.++....  +......++.....+|..++++.++...+.++....   +.
T Consensus        99 ----~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A           99 ----QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             ----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence                001123499999999999999999998864322  333456788888999999999999999999987652   12


Q ss_pred             C----HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCC
Q psy16214        303 Y----LKALSRRCKCFH-ALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       303 ~----~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +    +.....-|..++ ..++|..|..+|-.+++-..+
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~  213 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS  213 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence            2    344556688888 899999999999999765444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.0082  Score=59.98  Aligned_cols=122  Identities=18%  Similarity=0.219  Sum_probs=86.7

Q ss_pred             ccCC-hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhh--------cccCc-
Q psy16214        198 YDDK-MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV-AGKNQEAFDIYTEALKI--------DARNI-  266 (470)
Q Consensus       198 ~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~--------~p~~~-  266 (470)
                      ..++ ++.|+..+++....+|......... .          ..+... ..+--+|+..+.++++.        .+.+. 
T Consensus       260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~-~----------i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~  328 (754)
T 4gns_B          260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTA-M----------ITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD  328 (754)
T ss_dssp             TCGGGHHHHHHHHHHHHHHCGGGHHHHHHH-H----------HHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred             ccccHHHHHHHHHHHHHhhCCchhHHHHHH-H----------HHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            3455 5889999999999998765432211 0          111111 22345677777766632        11111 


Q ss_pred             -----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy16214        267 -----NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI  330 (470)
Q Consensus       267 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  330 (470)
                           .....++..-+..+...|+++-|+.+.++|+...|.....|+.|+.||..+|+|+.|+-.+..+
T Consensus       329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                 1123456667888889999999999999999999999999999999999999999999877755

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.90  E-value=0.052  Score=50.24  Aligned_cols=94  Identities=12%  Similarity=0.084  Sum_probs=76.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCc-------cc-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNI-------NI-----------NSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                      |......++.+.|...+.+|+.+.....       ..           ...+...++.++...|++.+|+..+..++..+
T Consensus       122 ~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~  201 (388)
T 2ff4_A          122 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH  201 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            5555667899999999999987642211       00           12345567788899999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        301 PNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       301 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      |-+-.++..+-.++...|+..+|+..|+++.+
T Consensus       202 P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          202 PYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.89  E-value=0.025  Score=48.27  Aligned_cols=62  Identities=16%  Similarity=0.105  Sum_probs=42.2

Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      +++.|+.++|+..+...++.+|.+......+..++.-.|+++.|.+.++.+.+++|+.....
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a   68 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA   68 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            45566667777777777777777777777777777777777777777777777777655443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.80  E-value=0.084  Score=54.19  Aligned_cols=46  Identities=13%  Similarity=0.085  Sum_probs=25.3

Q ss_pred             HHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHH
Q psy16214        162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLL  212 (470)
Q Consensus       162 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  212 (470)
                      ....|++++|.++.+.     .++...|..+|..+...++++.|+.+|.++
T Consensus       662 ~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          662 ALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3445555555555432     234556666666666666666666666554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.65  E-value=0.031  Score=51.82  Aligned_cols=95  Identities=11%  Similarity=0.041  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----------------------hHHHHHHHHHHHHcCChHHHHHHHHH
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------------AAYYGNRAACYMMLGMYTYALDDAKL   63 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~g~~~~A~~~~~~   63 (470)
                      .+...|......|+.+.|+..+.+|+.+....                      ..+...++.++...|++.+|+..+..
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            44555666677899999999999999874211                      23344567778899999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214         64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQE  100 (470)
Q Consensus        64 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  100 (470)
                      ++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus       197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.63  E-value=0.052  Score=46.30  Aligned_cols=58  Identities=21%  Similarity=0.215  Sum_probs=29.1

Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC
Q psy16214         14 QYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF   71 (470)
Q Consensus        14 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~   71 (470)
                      +++.|+.++|++.....|+.+|.++.....+...+.-.|+++.|...++.+.+++|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            3444455555555555555555555555555555555555555555555555555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.48  E-value=0.45  Score=44.83  Aligned_cols=174  Identities=14%  Similarity=0.012  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC--C----hHHHHHHHHHHhccCChHHHHHHHHHHHh---hCCChHHHH
Q psy16214        153 TYKLMKAECLAHLNRLQEAQEIANSILATDKQ--N----PDAVFVRGLCLYYDDKMDLAVNHFQLLLK---LAPDHAKAK  223 (470)
Q Consensus       153 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~  223 (470)
                      .+...++.++...|++.+|...+..+....-.  +    .+.+.....++...+++.+|...+.++..   ..+..+...
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk  217 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK  217 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence            44567899999999999999999987643211  1    46788888999999999999999998742   233333322


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy16214        224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDP  301 (470)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (470)
                      ..+        ....|..+...++|.+|..+|..++.....  ++.....++.....+..-.+....--....+.. .++
T Consensus       218 ~~~--------~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~-~~~  288 (445)
T 4b4t_P          218 LEY--------YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ-NDN  288 (445)
T ss_dssp             HHH--------HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH-HHS
T ss_pred             HHH--------HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh-hcc
Confidence            211        112288899999999999999998865321  211111122222222221211111111111111 122


Q ss_pred             --CCHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhcCC
Q psy16214        302 --NYLKALSRRCKCFHA--LGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       302 --~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~~~p  335 (470)
                        .....+..+..++..  +.+++.....|...+.-+|
T Consensus       289 ~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~  326 (445)
T 4b4t_P          289 NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD  326 (445)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred             cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence              234566677777764  4678888887777666554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.1  Score=52.20  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=86.4

Q ss_pred             cCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHH--Hc-CChHHHHHHHHHHHh--------cCCCChHHHHHHHHHHHH
Q psy16214         51 LGM-YTYALDDAKLAVSLDPRFSKGLIRQIKCNI--AL-GDAPTARSNLKALQE--------LDPDNPAIAQESKALETM  118 (470)
Q Consensus        51 ~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~~l~--------~~p~~~~~~~~l~~~~~~  118 (470)
                      .++ ++.|+..+++....+|.... ++..+.+..  .. .+--+|+..+.+.++        +.+.+.......-.....
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            344 58899999999999986543 333333222  12 233457777766653        233443322221111111


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        119 AKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI  178 (470)
Q Consensus       119 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  178 (470)
                        ...+|.-++.+++++-|+.+.++++...|.....|..++.+|..+|+|+.|+-.++.+
T Consensus       340 --L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 --LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             --HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             --HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence              2334556788999999999999999999999999999999999999999999998876

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.34  E-value=0.63  Score=47.60  Aligned_cols=165  Identities=13%  Similarity=-0.008  Sum_probs=84.2

Q ss_pred             HHHHhcCCHHHHHH-HHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q psy16214         12 NTQYKLKQYSKALK-CYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPT   90 (470)
Q Consensus        12 ~~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~   90 (470)
                      ......+++++|.. ++.    .-|+ ...+...+..+...|.+++|+...+        ++...   .......|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l~----~i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLP----NVEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGG----GCCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHHh----cCCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence            34456788888876 431    1110 1122455566666777777765442        22222   233456777777


Q ss_pred             HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy16214         91 ARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA-NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQ  169 (470)
Q Consensus        91 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~  169 (470)
                      |.+..+.     .+++..|..++......++++.|..++.. ++++.+..++..     ..+...+..++......|++.
T Consensus       671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~-----~~~~~~~~~~~~~a~~~~~~~  740 (814)
T 3mkq_A          671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSS-----FNNKEGLVTLAKDAETTGKFN  740 (814)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHH-----cCCHHHHHHHHHHHHHcCchH
Confidence            7776542     24566676666665555555554444332 444444333322     334445555666666666666


Q ss_pred             HHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHH
Q psy16214        170 EAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQ  210 (470)
Q Consensus       170 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  210 (470)
                      .|...+.+.=     +   .-....+|...+++++|+..-+
T Consensus       741 ~A~~~~~~~g-----~---~~~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          741 LAFNAYWIAG-----D---IQGAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             HHHHHHHHHT-----C---HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcC-----C---HHHHHHHHHHcCChHHHHHHHH
Confidence            6655544321     0   1112233455555555555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.83  E-value=1.6  Score=42.89  Aligned_cols=287  Identities=10%  Similarity=-0.008  Sum_probs=168.6

Q ss_pred             HHHHHhhcCCchhHHHHHHHHHHH---HcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Q psy16214         26 CYSEAISVCPNVAAYYGNRAACYM---MLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELD  102 (470)
Q Consensus        26 ~~~~al~~~p~~~~~~~~~a~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  102 (470)
                      -+...+..+|+.+..-..+.....   ..+++..-+..+..    .|.+.......+.+....|+..+|......+....
T Consensus        57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~  132 (618)
T 1qsa_A           57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG  132 (618)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence            455556667777665544444433   34566655554433    37777777777788888888877877777776655


Q ss_pred             CCChHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHH-------------HHHhCCCCHHH---------
Q psy16214        103 PDNPAIAQESKALET------MAKNFEGASKAFEANDYRTAMFYLDR-------------AMDQGVASKTY---------  154 (470)
Q Consensus       103 p~~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~-------------~l~~~p~~~~~---------  154 (470)
                      ...+.....+.....      ...........+..++...|......             .+..+|.....         
T Consensus       133 ~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~  212 (618)
T 1qsa_A          133 KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATD  212 (618)
T ss_dssp             SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCH
T ss_pred             CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCCh
Confidence            444443333333222      12234444445555555544433322             11223332211         


Q ss_pred             ----HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH----HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        155 ----KLMKAECLAHLNRLQEAQEIANSILATDKQNPD----AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       155 ----~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                          ....+.......+.+.|...+.......+-+..    .+..++.-....+...++...+.+.....+++. .....
T Consensus       213 ~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~  291 (618)
T 1qsa_A          213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERR  291 (618)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChH-HHHHH
Confidence                122333344455788898888877654433332    222333333444546677777777665444433 33333


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q psy16214        227 KRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD------  300 (470)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------  300 (470)
                                  +...+..++++.|...+...-.....    .+...+.+|.++..+|+.++|...|.++....      
T Consensus       292 ------------~r~Alr~~d~~~a~~~~~~l~~~~~~----~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~l  355 (618)
T 1qsa_A          292 ------------VRMALGTGDRRGLNTWLARLPMEAKE----KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMV  355 (618)
T ss_dssp             ------------HHHHHHHTCHHHHHHHHHHSCTTGGG----SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHH
T ss_pred             ------------HHHHHHCCCHHHHHHHHHHccccccc----cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHH
Confidence                        33455679999999999775442222    46678899999999999999999998876520      


Q ss_pred             -----------------CCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        301 -----------------PNY-----LKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       301 -----------------p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                                       +..     .......+..+..+|....|...+..++..
T Consensus       356 Aa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~  410 (618)
T 1qsa_A          356 AAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS  410 (618)
T ss_dssp             HHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence                             000     112356677888899999999888887764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.44  E-value=1.7  Score=40.77  Aligned_cols=199  Identities=19%  Similarity=0.123  Sum_probs=118.2

Q ss_pred             cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHH---h-ccC
Q psy16214        131 ANDYRTAMFYLDRAMDQ------GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCL---Y-YDD  200 (470)
Q Consensus       131 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~---~-~~g  200 (470)
                      .+++..|++.+..+.+.      .+....+...+..++...++|+...+.+.-+.+.......+...+....   . ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            35667777766444432      2345677888889999999999887777655544333322222211111   1 111


Q ss_pred             ChHHHHHHHHHHHhhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--ccCccchHHHHHHH
Q psy16214        201 KMDLAVNHFQLLLKLAPD--HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID--ARNININSKLLHNR  276 (470)
Q Consensus       201 ~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~l  276 (470)
                      ..+..  .....+.....  ....+.-.   ....-....+.++...|++.+|...+.....-.  ..+......++...
T Consensus       109 ~~d~~--~~~~~i~~l~~vte~kiflE~---erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q  183 (445)
T 4b4t_P          109 SLDLN--TRISVIETIRVVTENKIFVEV---ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ  183 (445)
T ss_dssp             TTHHH--HHHHHHHCCSSSSSCCCCCCH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             chhHH--HHHHHHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            11111  11111111000  00000000   001111223899999999999999999876322  12222245778888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH---hCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        277 ATVLFKMGKYNEAIADCTLALE---KDPNY----LKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       277 a~~~~~~g~~~~A~~~~~~al~---~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                      ..++...+++..|...+.++..   ..+..    ...+...|.++...++|.+|..+|..++...
T Consensus       184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~  248 (445)
T 4b4t_P          184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTD  248 (445)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence            9999999999999999998743   23333    3456778999999999999999999998753

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.13  Score=41.08  Aligned_cols=45  Identities=29%  Similarity=0.215  Sum_probs=32.0

Q ss_pred             HHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy16214         49 MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKAL   98 (470)
Q Consensus        49 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~   98 (470)
                      +..|+++.|.+..+..     ++...|..+|...+..|+++-|..+|.++
T Consensus        16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence            4567777777776554     45667777777777777777777777765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.8  Score=36.49  Aligned_cols=102  Identities=12%  Similarity=-0.031  Sum_probs=62.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .+....|+++.|.+..+.+     ++...|..+|......|+++-|..+|+++-..    ...                .
T Consensus        13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~----~~L----------------~   67 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSF----DKL----------------S   67 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH----HHH----------------H
T ss_pred             HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH----HHH----------------H
Confidence            3456788888888887765     56778888888888888888888888765321    111                2


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL  295 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  295 (470)
                      .+|.-.|+.+.-...-+.+.... +        +...-.+++.+|+++++++.|.+
T Consensus        68 ~Ly~~tg~~e~L~kla~iA~~~g-~--------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           68 FLYLVTGDVNKLSKMQNIAQTRE-D--------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTT-C--------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHCc-c--------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            23344455544333333332221 1        33335556677888888777654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=95.01  E-value=3.4  Score=44.14  Aligned_cols=141  Identities=11%  Similarity=0.016  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Q psy16214         41 YGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELD-PDNPAIAQESKALETMA  119 (470)
Q Consensus        41 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~  119 (470)
                      ...+...+...+.++-|.+    .+..-|.++...+.+|.++...|++++|..+|+++-.-- ..+.... .+.      
T Consensus       815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~-~~~------  883 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA-VLR------  883 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS-SHH------
T ss_pred             HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh-hhc------
Confidence            3345666777888876654    334567777888999999999999999999999875422 2111100 000      


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-----HHHH
Q psy16214        120 KNFEGASKAFEANDYRTAMFYLDRAMDQ---GVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-----AVFV  191 (470)
Q Consensus       120 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~  191 (470)
                                          .+......   ....+.++.....++...+.++.+++....++...+.+..     .|..
T Consensus       884 --------------------~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~  943 (1139)
T 4fhn_B          884 --------------------EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHE  943 (1139)
T ss_dssp             --------------------HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred             --------------------ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHH
Confidence                                00111111   2223456677778888889999999999988876654322     5666


Q ss_pred             HHHHHhccCChHHHHHHHHHH
Q psy16214        192 RGLCLYYDDKMDLAVNHFQLL  212 (470)
Q Consensus       192 la~~~~~~g~~~~A~~~~~~~  212 (470)
                      +=..+...|+|++|...+...
T Consensus       944 iFk~~L~l~~ye~Ay~aL~~~  964 (1139)
T 4fhn_B          944 TLKTACAAGKFDAAHVALMVL  964 (1139)
T ss_dssp             HHHHHHHHCCSGGGGHHHHHH
T ss_pred             HHHHHHhhCCHHHHHHHHHhC
Confidence            677788889999998877544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.00  E-value=0.17  Score=48.15  Aligned_cols=77  Identities=12%  Similarity=-0.095  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         40 YYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      .+..+|........+..|..+|.+|+.+.|++...+..+|.+....|+.-+|+-+|.+++......+.+...+..+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f  230 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666666666666666665555555555555553

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.87  E-value=2  Score=38.22  Aligned_cols=140  Identities=11%  Similarity=-0.001  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHhcCCCCh
Q psy16214         40 YYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRFSKGLIRQIKCNIALGDA--------PTARSNLKALQELDPDNP  106 (470)
Q Consensus        40 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~--------~~A~~~~~~~l~~~p~~~  106 (470)
                      +++.-+..+++.|++..|.+...-.++.     -|-+....-++..++.....-        .+|+.+-.+.-...-.++
T Consensus        57 LL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp  136 (336)
T 3lpz_A           57 ILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDP  136 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCH
T ss_pred             HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCH
Confidence            3444455555556655555544333321     122233444444444443321        223333222111233567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH---HHHHHHH-HhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHh
Q psy16214        107 AIAQESKALETMAKNFEGASKAFEANDYRTAM---FYLDRAM-DQGVASKTYKLMKAE-CLAHLNRLQEAQEIANSIL  179 (470)
Q Consensus       107 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~---~~~~~~l-~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l  179 (470)
                      ..+..++..+...+.+..|..++-.+.-+.+.   ..+-... +..|.....+..++. .|+..++...|...+...+
T Consensus       137 ~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          137 ELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            88888888887777788888877766643321   2222222 224555566655554 4677899998887665544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.3  Score=45.84  Aligned_cols=107  Identities=9%  Similarity=-0.061  Sum_probs=73.6

Q ss_pred             ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-
Q psy16214        185 NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA-  263 (470)
Q Consensus       185 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-  263 (470)
                      ...++..+|..+...|+++.|.+.|.++.............+         .....+++..++|..+...+.++..... 
T Consensus       130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~---------l~~irl~l~~~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVM---------LTIARLGFFYNDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHH---------HHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHH---------HHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence            345778888888888888888888888877544432222111         2226677778888888888888865432 


Q ss_pred             -cCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        264 -RNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       264 -~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                       .++.....+....|.++...++|.+|...|-.++...
T Consensus       201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence             2333344556667778888889999988888877654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.33  E-value=0.41  Score=44.90  Aligned_cols=97  Identities=10%  Similarity=-0.091  Sum_probs=78.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD--PNY----LKALSRRCK  312 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~la~  312 (470)
                      |..+...|++++|.++|.++......... ...++.....++...+++..+...+.++..+.  ..+    .......|.
T Consensus       138 a~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl  216 (429)
T 4b4t_R          138 GEYYAQIGDKDNAEKTLGKSLSKAISTGA-KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGI  216 (429)
T ss_dssp             HHHHHHHCCCTTHHHHHHHHHHHHTCCCS-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence            99999999999999999998876654433 46788889999999999999999999997652  122    234455677


Q ss_pred             HHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        313 CFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       313 ~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ++...++|.+|...|-.++.-...
T Consensus       217 ~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          217 HCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             GGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhChHHHHHHHHHHHhccCCc
Confidence            888899999999999988876554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=94.16  E-value=0.67  Score=47.77  Aligned_cols=91  Identities=8%  Similarity=-0.029  Sum_probs=76.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhh-----cccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKI-----DARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD-PNYLKALSRRCK  312 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  312 (470)
                      -..+.+.|+.++|..++.+..+.     .|+     ...|..+-..+.+.|+.++|.+.|++..+.. .-+..+|..+-.
T Consensus       134 IdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-----LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            78899999999999999875432     343     5679999999999999999999999998753 335788888999


Q ss_pred             HHHHhCC-HHHHHHHHHHHHhcC
Q psy16214        313 CFHALGQ-YKECVIDAEKIYKMD  334 (470)
Q Consensus       313 ~~~~~g~-~~~A~~~~~~a~~~~  334 (470)
                      ++.+.|+ .++|.+.+++..+..
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcC
Confidence            9999998 578899999988754

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.93  E-value=0.42  Score=45.43  Aligned_cols=53  Identities=13%  Similarity=0.035  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214         74 GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS  126 (470)
Q Consensus        74 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  126 (470)
                      .+..+|.+......+..|..+|.+|..+.|++...++.+|.+....++.-.+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~  206 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI  206 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHH
Confidence            45566666666666667777777777777777666666666666544444444

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.27  E-value=0.48  Score=44.82  Aligned_cols=129  Identities=12%  Similarity=0.068  Sum_probs=57.5

Q ss_pred             HHHHcCCHHHHHHHHHHHhh-----------cCCCChHHHHHHHHHHhccCChHHHH----------HHHHHHHh-----
Q psy16214        161 CLAHLNRLQEAQEIANSILA-----------TDKQNPDAVFVRGLCLYYDDKMDLAV----------NHFQLLLK-----  214 (470)
Q Consensus       161 ~~~~~~~~~~A~~~~~~~l~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~~l~-----  214 (470)
                      .++..+++++|..+...++.           +++-.+.+|+..+.++...|+.....          ..+-.+++     
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            34567888888888776551           13334667888888887777765432          22323332     


Q ss_pred             hCCChH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccC---ccchHHHHHHHHHHHHHcCCHHHHH
Q psy16214        215 LAPDHA-KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARN---ININSKLLHNRATVLFKMGKYNEAI  290 (470)
Q Consensus       215 ~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~la~~~~~~g~~~~A~  290 (470)
                      .+++.. ..+..+            -..|...+.+++|..+..++.  .|.+   .......++.+|.++...++|.+|.
T Consensus       225 ~D~~~qa~l~nll------------LRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~  290 (523)
T 4b4t_S          225 HDNETKAMLINLI------------LRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTAN  290 (523)
T ss_dssp             SSSCHHHHHHHHH------------HHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCcchhHHHHHHH------------HHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            333322 223333            778899999999999999985  3322   1113567788999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q psy16214        291 ADCTLALEKDPNY  303 (470)
Q Consensus       291 ~~~~~al~~~p~~  303 (470)
                      +++..|+...|.+
T Consensus       291 ~~L~~A~rkap~~  303 (523)
T 4b4t_S          291 EYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHTSSCSCS
T ss_pred             HHHHHHHHhCCcc
Confidence            9999999987754

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.15  E-value=4.3e-06  Score=76.95  Aligned_cols=222  Identities=14%  Similarity=0.069  Sum_probs=121.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.|..+|.+++..+...+||+.|-++     +++..+.....+..+.|.|++=+.++.-+-+. -..+.+-..|..+|
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ay  126 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFAL  126 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHH
Confidence            3456777777777777777777777554     23334445555556677777777776655443 23344445566777


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      .++++..+-.+.+.     .|+...+             -.-+..++..|.|+.|.-+|..+    ++    +..+|.++
T Consensus       127 Ak~~rL~elEefl~-----~~N~A~i-------------q~VGDrcf~e~lYeAAKilys~i----sN----~akLAstL  180 (624)
T 3lvg_A          127 AKTNRLAELEEFIN-----GPNNAHI-------------QQVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTL  180 (624)
T ss_dssp             HTSCSSSTTTSTTS-----CCSSSCT-------------HHHHHHHHHSCCSTTSSTTGGGS----CC----CTTTSSSS
T ss_pred             HhhCcHHHHHHHHc-----CCCcccH-------------HHHHHHHHHccCHHHHHHHHHhC----cc----HHHHHHHH
Confidence            77777554322221     3444443             22344567777776665544322    11    23366777


Q ss_pred             HHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHH
Q psy16214        163 AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK  242 (470)
Q Consensus       163 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (470)
                      ..+|+|..|++..+++     +++.+|-....++...+++.-|..+--.++- .|+...-.               ...|
T Consensus       181 V~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hadeL~el---------------v~~Y  239 (624)
T 3lvg_A          181 VHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADELEEL---------------INYY  239 (624)
T ss_dssp             SSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSCCSGG---------------GSSS
T ss_pred             HHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHHHHHH---------------HHHH
Confidence            7777777777665543     4455666666666666666655554433332 22221111               3334


Q ss_pred             HhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHH
Q psy16214        243 FVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF  281 (470)
Q Consensus       243 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~  281 (470)
                      ...|-+++-+.+++.++.+..-    ....+..||.+|.
T Consensus       240 E~~G~f~ELIsLlEaglglErA----HmGmFTELaILYs  274 (624)
T 3lvg_A          240 QDRGYFEELITMLEAALGLERA----HMGMFTELAILYS  274 (624)
T ss_dssp             STTCCCTTSTTTHHHHTTSTTC----CHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCCch----hHHHHHHHHHHHH
Confidence            4555566666666655544433    2233445555444

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.81  E-value=1.5  Score=45.19  Aligned_cols=94  Identities=9%  Similarity=-0.054  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh-----cCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCCHHHHHHH
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAIS-----VCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL--DPRFSKGLIRQ   78 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l   78 (470)
                      .+..+-..+++.|+.++|..+|....+     ..| +...|..+-..|.+.|+.++|.+.|++..+.  .| +...|..+
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntL  206 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHH
Confidence            477778899999999999999977543     234 5788999999999999999999999998875  45 67788888


Q ss_pred             HHHHHHcCCh-HHHHHHHHHHHhc
Q psy16214         79 IKCNIALGDA-PTARSNLKALQEL  101 (470)
Q Consensus        79 a~~~~~~g~~-~~A~~~~~~~l~~  101 (470)
                      -.++.+.|+. ++|.++++...+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHc
Confidence            8899999985 7888999888764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.77  E-value=7.7  Score=41.44  Aligned_cols=171  Identities=11%  Similarity=0.041  Sum_probs=101.9

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccC----
Q psy16214        191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKID-ARN----  265 (470)
Q Consensus       191 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~----  265 (470)
                      .+...+...+.++-+..    .+...|.++.....+            |.+++..|++++|..+|.++-.-- ..+    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~------------g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~  880 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLK------------ALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA  880 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHH------------HHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHH------------HHHHHhcCCHHHHHHHHHHHhhhhcccchhhh
Confidence            34444555566655443    334556665555555            899999999999999998863110 000    


Q ss_pred             --------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHHhCCHHHHHHH
Q psy16214        266 --------------ININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-L----KALSRRCKCFHALGQYKECVID  326 (470)
Q Consensus       266 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~g~~~~A~~~  326 (470)
                                    ....+..|..+..++.+.+.++.+++....|++..+.+ .    ..|.++-..+..+|+|++|...
T Consensus       881 ~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a  960 (1139)
T 4fhn_B          881 VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA  960 (1139)
T ss_dssp             SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred             hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence                          01123557778888889999999999999999875433 2    2577788889999999999877


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHHhhcccccchhhhccCCCCCCHHHHHHHHHHHHH
Q psy16214        327 AEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRAL  382 (470)
Q Consensus       327 ~~~a~~~~p~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~  382 (470)
                      +...-...-..+....|-...     .+....-.++..+...-.+++......+|+
T Consensus       961 L~~~pd~~~r~~cLr~LV~~l-----ce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr 1011 (1139)
T 4fhn_B          961 LMVLSTTPLKKSCLLDFVNQL-----TKQGKINQLLNYSMPTLRQDVDNLLERKAF 1011 (1139)
T ss_dssp             HHHHHHSSSCHHHHHHHHHHH-----HHHCCHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHH-----HhCCChhhhhCCCCccHHHHHHHHHHHHHH
Confidence            755432222222222221111     122233344455554455555555444443

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.57  E-value=0.37  Score=45.58  Aligned_cols=67  Identities=9%  Similarity=-0.066  Sum_probs=58.3

Q ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        268 INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY-------LKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ..+.++..+-..|...+.++.|..+..++.  .|..       ...++.+|+++...++|.+|.+++..|+...|.
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~  302 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH  302 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence            367889999999999999999999999984  4432       556778899999999999999999999998875

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.90  E-value=14  Score=32.60  Aligned_cols=170  Identities=9%  Similarity=0.003  Sum_probs=97.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcC------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCCCHHHHHHH
Q psy16214         10 DGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL-----DPRFSKGLIRQ   78 (470)
Q Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l   78 (470)
                      +-...+..|+|=+|-+.|+......      .+-.+.++.-+..+...|++..|.....-.++.     .|-+....-++
T Consensus        19 rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl   98 (312)
T 2wpv_A           19 RFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL   98 (312)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3344556677777777666555331      122445566667777778877777665444432     23344555556


Q ss_pred             HHHHHHcCChH-HHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH---HHHHHHHh
Q psy16214         79 IKCNIALGDAP-TARSNLKALQE-------LDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMF---YLDRAMDQ  147 (470)
Q Consensus        79 a~~~~~~g~~~-~A~~~~~~~l~-------~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~---~~~~~l~~  147 (470)
                      ..++.....-+ .=...++++++       ..-.++..+..++..+...+++..|..++-.++.+.+..   .+-.....
T Consensus        99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A           99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence            66655433211 11223333332       123578889999999888888888888888777433333   22233332


Q ss_pred             ----CCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHh
Q psy16214        148 ----GVASKTYKLMKAE-CLAHLNRLQEAQEIANSIL  179 (470)
Q Consensus       148 ----~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~l  179 (470)
                          .|.....+..++. .|+..++...|...+....
T Consensus       179 ~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          179 VDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence                2333444444443 4567888888888877654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=86.68  E-value=31  Score=35.51  Aligned_cols=274  Identities=10%  Similarity=0.001  Sum_probs=141.4

Q ss_pred             HHhcCCHHHHHHHHHHHhhcC-Cc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---C---CH----HHHHHH
Q psy16214         14 QYKLKQYSKALKCYSEAISVC-PN----VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDP---R---FS----KGLIRQ   78 (470)
Q Consensus        14 ~~~~g~~~~A~~~~~~al~~~-p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~---~~----~~~~~l   78 (470)
                      ....|+.++++..+.+.+... .+    ...+++.+|.++...+  .+++..+...+..+.   .   ..    .+-..+
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            345677788888888777522 11    1445666666655554  478888888776432   0   11    345567


Q ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214         79 IKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK  158 (470)
Q Consensus        79 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~  158 (470)
                      |.++...++ +++.+.+..++..+.  ....        ...-+..+..++..++-+....++..+.+...+...-...+
T Consensus       462 Gla~~GS~~-eev~e~L~~~L~dd~--~~~~--------~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aal  530 (963)
T 4ady_A          462 GLAAMGSAN-IEVYEALKEVLYNDS--ATSG--------EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAV  530 (963)
T ss_dssp             HHHSTTCCC-HHHHHHHHHHHHTCC--HHHH--------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             HHHhcCCCC-HHHHHHHHHHHhcCC--HHHH--------HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            777766655 567777777776332  1111        11123444556677777666666666655433322222334


Q ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCCCChH----HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Q psy16214        159 AECLAHLNRLQEAQEIANSILATDKQNPD----AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA  234 (470)
Q Consensus       159 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  234 (470)
                      |..+...|+.+.+-.+.+.+...  .++.    +-+.+|..|...|+...-...+..+.. ++++. +...        .
T Consensus       531 gLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d~~d~-VRra--------A  598 (963)
T 4ady_A          531 GLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-DSNDD-VRRA--------A  598 (963)
T ss_dssp             HHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-CSCHH-HHHH--------H
T ss_pred             HHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-CCcHH-HHHH--------H
Confidence            44455677877666666655442  2333    334567778889996544446666554 44332 1110        0


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY---LKALSRRC  311 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la  311 (470)
                        -.|......|+.+.+...+.....  ..++.....+-..+|.+....++ .+++..+..... +++.   ..+...+|
T Consensus       599 --ViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~d~~Vrq~Ai~ALG  672 (963)
T 4ady_A          599 --VIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DPVDFVRQAAMIALS  672 (963)
T ss_dssp             --HHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred             --HHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CCCHHHHHHHHHHHH
Confidence              013334444554333333332222  22332233333344444433343 677777777653 4443   23445555


Q ss_pred             HHHHHhC
Q psy16214        312 KCFHALG  318 (470)
Q Consensus       312 ~~~~~~g  318 (470)
                      .+.....
T Consensus       673 ~Ig~gtn  679 (963)
T 4ady_A          673 MILIQQT  679 (963)
T ss_dssp             HHSTTCC
T ss_pred             HHhcCCc
Confidence            5554433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=80.58  E-value=16  Score=27.53  Aligned_cols=80  Identities=11%  Similarity=0.022  Sum_probs=55.9

Q ss_pred             CCHHHHHHHHHHHHhhcccCccchHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Q psy16214        246 GKNQEAFDIYTEALKIDARNININSKLLHNRA-TVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECV  324 (470)
Q Consensus       246 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~  324 (470)
                      ++....+.+|-+.-. ...        +..+| ..+...|+-++-.+.+...+...+-++..++.+|.+|.+.|+..+|.
T Consensus        75 ~NlKrVi~C~~~~n~-~se--------~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~  145 (172)
T 1wy6_A           75 QNLKSVVECGVINNT-LNE--------HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDAT  145 (172)
T ss_dssp             SCTHHHHHHHHHTTC-CCH--------HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcHHHHHHHHHHhcc-hHH--------HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHH
Confidence            555666666654211 111        33444 34567777777777777766667777999999999999999999999


Q ss_pred             HHHHHHHhcC
Q psy16214        325 IDAEKIYKMD  334 (470)
Q Consensus       325 ~~~~~a~~~~  334 (470)
                      +.+.+|.+..
T Consensus       146 eLl~~AC~kG  155 (172)
T 1wy6_A          146 TLLIEACKKG  155 (172)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	470
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-18
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-18
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-15
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-15
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	1e-15
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	6e-15
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	8e-15
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	3e-14
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-12
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	5e-12
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-10
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-06
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.002
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	9e-10
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	6e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-07
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	5e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	0.002
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	5e-07
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	9e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-06
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	4e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.003
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-06
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-06
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	4e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	7e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-05
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-04
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	2e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	6e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	0.002
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.001

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (191), Expect = 2e-18
 Identities = 24/77 (31%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 350 LKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHT-NATQAQKLEQEKLFKEVG 408
           L+++  KD+Y ILG   +A+  D+K+ Y+K  L++HPD+ + +       E  + F E+ 
Sbjct: 10  LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEID 69

Query: 409 EAYGILSDPTKRSRYDR 425
           +A+ IL +   + +YD 
Sbjct: 70  QAWKILGNEETKKKYDL 86

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 3e-18
 Identities = 57/357 (15%), Positives = 104/357 (29%), Gaps = 31/357 (8%)

Query: 9   EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD 68
           E  + +Y+   +  A +   +     P+        ++ +        +   + LA+  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 69  PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA 128
           P  ++                      +  Q  +             + +      A+  
Sbjct: 64  PLLAEAYSNL------------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111

Query: 129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDA 188
             A D   A+     A+         +      L  L RL+EA+      + T      A
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

Query: 189 VFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKN 248
               G       ++ LA++HF+  + L P+   A                GN    A   
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL------------GNVLKEARIF 219

Query: 249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALS 308
             A   Y  AL +   +  +      N A V ++ G  + AI     A+E  P++  A  
Sbjct: 220 DRAVAAYLRALSLSPNHAVV----HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 275

Query: 309 RRCKCFHALGQYKECVIDAEK-IYKMDNSRENHNFLEEAKRLLKRSE--VKDYYKIL 362
                    G   E        +       ++ N L   KR     E  V+ Y K L
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 58/352 (16%), Positives = 104/352 (29%), Gaps = 48/352 (13%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
            +  ++ ++  ++    + AI   P +A  Y N    Y   G    A++  + A+ L P 
Sbjct: 40  SSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99

Query: 71  FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG------ 124
           F  G I      +A GD   A     +  + +PD   +  +   L       E       
Sbjct: 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159

Query: 125 ----------------ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRL 168
                                   +   A+ + ++A+          +     L      
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219

Query: 169 QEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKR 228
             A       L+    +           Y    +DLA++ ++  ++L P    A      
Sbjct: 220 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLAN 279

Query: 229 AKLLKAKKEE----------------------GNEKFVAGKNQEAFDIYTEALKIDARNI 266
           A   K    E                       N K   G  +EA  +Y +AL++     
Sbjct: 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA 339

Query: 267 NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG 318
                   N A+VL + GK  EA+     A+   P +  A S        + 
Sbjct: 340 AA----HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (178), Expect = 1e-14
 Identities = 38/234 (16%), Positives = 67/234 (28%), Gaps = 14/234 (5%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
            A      G       +   A+  + +A+++ PN    Y N         ++  A+    
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF 122
            A+SL P  +             G    A    +   EL P  P       A   +A   
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP------DAYCNLANAL 281

Query: 123 EGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATD 182
                  E      A    + A+             A        ++EA  +    L   
Sbjct: 282 ------KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

Query: 183 KQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKK 236
            +   A       L    K+  A+ H++  ++++P  A A         LK  +
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY--SNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 39/316 (12%), Positives = 81/316 (25%), Gaps = 35/316 (11%)

Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
            E A + ++A D+  A  +  +   Q   +    L+ +       RL  +   +   +  
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 182 DKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK------------------ 223
           +    +A    G       ++  A+ H++  L+L PD                       
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM 283
                 +         ++     K     +                +    N   V    
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 284 GKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD--------- 334
           G+   AI     A+  DPN+L A             +   V    +   +          
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 335 --NSRENHNFLEEAKRLLKRS-----EVKDYYKILGVTKNASSDDIK-KAYRKRALVHHP 386
                     ++ A    +R+        D Y  L           + +     AL   P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 387 DRHTNATQAQKLEQEK 402
               +      +++E+
Sbjct: 303 THADSLNNLANIKREQ 318

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 5e-07
 Identities = 18/77 (23%), Positives = 31/77 (40%)

Query: 11  GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR 70
            N + +     +A++ Y +A+ V P  AA + N A+     G    AL   K A+ + P 
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 71  FSKGLIRQIKCNIALGD 87
           F+            + D
Sbjct: 372 FADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 33/271 (12%), Positives = 72/271 (26%), Gaps = 14/271 (5%)

Query: 74  GLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE--- 130
           G +         GD   A  +   L   +PDN  +     ++    +  + ++       
Sbjct: 1   GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60

Query: 131 -------ANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDK 183
                           Y +R   Q         ++ +       +  A  +  +      
Sbjct: 61  KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 184 QNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKF 243
                  ++     Y  + DL      L           K    +     A    G    
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 244 VAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY 303
             G+   A   + +A+ +D   ++       N   VL +   ++ A+A    AL   PN+
Sbjct: 181 AQGEIWLAIHHFEKAVTLDPNFLDA----YINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

Query: 304 LKALSRRCKCFHALGQYKECVIDAEKIYKMD 334
                     ++  G     +    +  ++ 
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 69.6 bits (170), Expect = 1e-15
 Identities = 15/81 (18%), Positives = 37/81 (45%), Gaps = 11/81 (13%)

Query: 348 RLLKRSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFK 405
           R+L R++ +   ++L + +    D   +++AY++++L+ HPD+  +             +
Sbjct: 3   RVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHAL---------MQ 53

Query: 406 EVGEAYGILSDPTKRSRYDRG 426
           E+   +G         R + G
Sbjct: 54  ELNSLWGTFKTEVYNLRMNLG 74

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 354 EVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGI 413
             +  +K +G+    + + +KK YRK  LV HPD+ T      +   + +F E+ +A+  
Sbjct: 31  AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQP--YEQYAKMIFMELNDAWSE 88

Query: 414 LSDPTKRSRY 423
             +  ++  Y
Sbjct: 89  FENQGQKPLY 98

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (164), Expect = 6e-15
 Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 7/80 (8%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           KDYY+ LG+ + AS ++IK+AYR++AL +HPD++      +K      FKE+ EAY +LS
Sbjct: 3   KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEK------FKEIAEAYDVLS 56

Query: 416 DPTKRSRYDR-GEDIMEDSG 434
           DP KR  +DR GE+ ++ SG
Sbjct: 57  DPRKREIFDRYGEEGLKGSG 76

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 67.0 bits (163), Expect = 8e-15
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 357 DYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGIL 414
           DY+ + G+      D   +   ++     +HPD+  + +QA++L   +    + +A+  L
Sbjct: 2   DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61

Query: 415 SDPTKRSRYD 424
             P  R+ Y 
Sbjct: 62  RHPLMRAEYL 71

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 65.4 bits (159), Expect = 3e-14
 Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 5/70 (7%)

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           +DYY+ILGV+K A   +I+KAY++ A+ +HPDR+    +      E  FKE+ EAY +L+
Sbjct: 3   QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKE-----AEAKFKEIKEAYEVLT 57

Query: 416 DPTKRSRYDR 425
           D  KR+ YD+
Sbjct: 58  DSQKRAAYDQ 67

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%)

Query: 352 RSEVKDYYKILGVTKNASSD--DIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGE 409
           R E      +LG+ ++A  +   ++KAY K+    HPD+  +  +          K++  
Sbjct: 4   REESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEK---------MKKMNT 54

Query: 410 AYGILSDPTKRSRYDRGEDIMEDSGMGGHAGANLFEQH 447
            Y  + D  K +          D+      G + +EQ 
Sbjct: 55  LYKKMEDGVKYAHQPDFGGF-WDATEIPTYGTDEWEQW 91

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 5e-12
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 351 KRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEA 410
           + S +K+   ++         + KK  R+  L  HPD++            ++FK +   
Sbjct: 11  RGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHD----IANEVFKHLQNE 66

Query: 411 YGILSDPTKRSRYDRGED 428
              L    K++  D+  D
Sbjct: 67  INRLE---KQAFLDQNAD 81

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 3e-10
 Identities = 42/186 (22%), Positives = 71/186 (38%), Gaps = 1/186 (0%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
           SA++ KE GN  +  ++Y +A  CY  AI+  P VA YY NRA CY+ +     AL D +
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP-AIAQESKALETMAKN 121
            A+ LD +  K      +C + +     A +NL+    L  +       +  +   +AK 
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

Query: 122 FEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILAT 181
               S         + +      +      +  +  +     H +      + A      
Sbjct: 123 KRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKH 182

Query: 182 DKQNPD 187
           DK   D
Sbjct: 183 DKYMAD 188

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 7/185 (3%)

Query: 236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTL 295
           KE+GN  FV  K  EA   Y  A+  +       +    NRA    KM +  +A+ADC  
Sbjct: 8   KEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 296 ALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEV 355
           ALE D   +KA     +C   +  Y E + + ++ Y +   +   NF ++    L+ ++ 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL-NFGDDIPSALRIAKK 122

Query: 356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILS 415
           K +  I    +    +    +Y  R +    +R     Q      E       +   I +
Sbjct: 123 KRWNSIE--ERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

Query: 416 DPTKR 420
              K 
Sbjct: 181 KHDKY 185

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 31/196 (15%), Positives = 57/196 (29%), Gaps = 21/196 (10%)

Query: 127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP 186
           + F    Y  A     RA+ +      Y   +A C   + + ++A       L  D Q+ 
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 187 DAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAG 246
            A F  G C    +  D A+ + Q    LA +          + L  AKK+  N      
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERR 132

Query: 247 KNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKA 306
            +QE+                       +         +    + +C    E   +    
Sbjct: 133 IHQESE---------------------LHSYLTRLIAAERERELEECQRNHEGHEDDGHI 171

Query: 307 LSRRCKCFHALGQYKE 322
            +++        +Y  
Sbjct: 172 RAQQACIEAKHDKYMA 187

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 3/132 (2%)

Query: 273 LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK 332
           L  +   LF   KY EA A    A+ ++P      + R  C+  + Q ++ + D  +  +
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 333 MD-NSRENHNFLEEAKRLLKRSE--VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRH 389
           +D  S + H FL + +  ++  +  + +  +   + K    +          +      +
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 126

Query: 390 TNATQAQKLEQE 401
           +   +    E E
Sbjct: 127 SIEERRIHQESE 138

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 9e-10
 Identities = 35/308 (11%), Positives = 86/308 (27%), Gaps = 24/308 (7%)

Query: 3   SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAK 62
              +  E+G  + +      A+  +  A+   P     +               A+   +
Sbjct: 18  DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALR 77

Query: 63  LAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI---AQESKALETMA 119
             + L P     L+              A   L+      P    +   A+E      + 
Sbjct: 78  RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 137

Query: 120 KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMK--AECLAHLNRLQEAQEIANS 177
            +          + +         A+     S    +               +A +   +
Sbjct: 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 197

Query: 178 ILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237
            L+    +       G  L   ++ + AV  ++  L+L P + +++     + +      
Sbjct: 198 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL---- 253

Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNIN-------INSKLLHNRATVLFKMGKYNEAI 290
                   G ++EA + + EAL +  ++         ++  +       L  +G+ +   
Sbjct: 254 --------GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305

Query: 291 ADCTLALE 298
           A     L 
Sbjct: 306 AADARDLS 313

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 6e-07
 Identities = 15/157 (9%), Positives = 42/157 (26%), Gaps = 1/157 (0%)

Query: 255 YTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF 314
           Y +  + +  N   +            + G    A+     A+++DP +++A        
Sbjct: 4   YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63

Query: 315 HALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIK 374
               Q    +    +  ++    +            +  + +    +    +   +    
Sbjct: 64  AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL 123

Query: 375 KAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAY 411
               +          +       L  + LF EV E +
Sbjct: 124 VTPAEEGAGGAGLGPSK-RILGSLLSDSLFLEVKELF 159

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 17/263 (6%), Positives = 54/263 (20%), Gaps = 32/263 (12%)

Query: 22  KALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS--------- 72
           ++ +   +A  +  ++       A  +             +  +  D  ++         
Sbjct: 4   QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLY---QKMLVTDLEYALDKKVEQDL 60

Query: 73  -----KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASK 127
                K  I  ++        P        L        A    ++ L+ +   F     
Sbjct: 61  WNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEA--ASGFYTQLLQELCTVFNVDLP 118

Query: 128 AFEA-----------NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIAN 176
                                +     +           L   +   + N+  +A+    
Sbjct: 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHL--GDIARYRNQTSQAESYYR 176

Query: 177 SILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKK 236
                   N        +           + ++   + +      A    ++A     + 
Sbjct: 177 HAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES 236

Query: 237 EEGNEKFVAGKNQEAFDIYTEAL 259
            +  +      +     I     
Sbjct: 237 RDEVKTKWGVSDFIKAFIKFHGH 259

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 19/173 (10%), Positives = 47/173 (27%), Gaps = 18/173 (10%)

Query: 205 AVNHFQLLLKLAPDHAKA--------------KETYKRAKLLKAKKEEGNEKFVAGKNQE 250
           +  + +    L  D   +              ++ Y++  +   +     +K        
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALD-KKVEQDLWNH 63

Query: 251 AFDIYTEALKIDAR---NININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKAL 307
           AF      L+  A+   N N +    +    +    G Y + + +       D       
Sbjct: 64  AFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKS 123

Query: 308 SRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYK 360
           S+     +        V                +  + A+   + S+ + YY+
Sbjct: 124 SQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYR 176

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVC---------------PNVAAYYGNRAACY 48
           A   KE G   +K  +Y +A+  Y + +S                   + A + N A CY
Sbjct: 15  AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 74

Query: 49  MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108
           + L  YT A++    A+ LD    KGL R+ +  + + +  +A+ + + + E++P N A 
Sbjct: 75  LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 134

Query: 109 AQESKALETMAKNFEGASKAFEAN 132
             +    +  AK      +   AN
Sbjct: 135 RLQIFMCQKKAKEHNERDRRTYAN 158

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 29/152 (19%), Positives = 59/152 (38%), Gaps = 17/152 (11%)

Query: 223 KETYK-----RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSK------ 271
           KE+++     + +     KE+G   F  GK  +A   Y + +        ++ K      
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 272 -----LLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVID 326
                   N A    K+ +Y +A+  C  AL  D    K L RR +    + +++    D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 327 AEKIYKMD-NSRENHNFLEEAKRLLKRSEVKD 357
            EK+ +++  ++     +   ++  K    +D
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 1/131 (0%)

Query: 192 RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEA 251
           +G   +   K   AV  +  ++          E   +A          N   +       
Sbjct: 21  KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN-LAMCYLKLRE 79

Query: 252 FDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRC 311
           +    E         + N K L+ R      M ++  A  D    LE +P    A  +  
Sbjct: 80  YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIF 139

Query: 312 KCFHALGQYKE 322
            C     ++ E
Sbjct: 140 MCQKKAKEHNE 150

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 5e-07
 Identities = 44/131 (33%), Positives = 66/131 (50%), Gaps = 2/131 (1%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           AE+ K   N  +K K Y  A+K YS+AI + P+ A YYGNR+  Y+    Y YAL DA  
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK--N 121
           A+ LD ++ KG  R+   N+ALG    A  + + + ++ P +     + +    + K   
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 122 FEGASKAFEAN 132
           FE A    E  
Sbjct: 130 FERAIAGDEHK 140

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 8/132 (6%)

Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
           A    KRA+ LK    + N+ F A   + A   Y++A++++  N         NR+    
Sbjct: 3   ADGALKRAEELK---TQANDYFKAKDYENAIKFYSQAIELNPSNAIYY----GNRSLAYL 55

Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRENH 340
           +   Y  A+ D T A+E D  Y+K   RR     ALG+++  + D E + K+  + ++  
Sbjct: 56  RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK 115

Query: 341 NFLEEAKRLLKR 352
              +E  +++K+
Sbjct: 116 MKYQECNKIVKQ 127

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 48.5 bits (115), Expect = 6e-07
 Identities = 21/124 (16%), Positives = 40/124 (32%), Gaps = 5/124 (4%)

Query: 13  TQYK--LKQ--YSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD 68
           TQ+K  L +    +AL+   EAI   P  A+   +      + G +  A +    ++ L 
Sbjct: 1   TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60

Query: 69  PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK-NFEGASK 127
           P +  G  +      A              + L  +            +M   ++E  S+
Sbjct: 61  PEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 120

Query: 128 AFEA 131
               
Sbjct: 121 LALQ 124

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 4/120 (3%)

Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
           +       G+ Q+A ++  EA+K   ++    + L  +   +L   G +  A      ++
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKD----ASLRSSFIELLCIDGDFERADEQLMQSI 57

Query: 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKD 357
           +  P YL   S+      A    K+    A     +  + E    L      +   + + 
Sbjct: 58  KLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ 117

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 3/160 (1%)

Query: 280 LFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMD-NSRE 338
               G+  +A+     A++  P      S   +     G ++       +  K+      
Sbjct: 6   ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65

Query: 339 NHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKL 398
             + L    +  +  +  D+ +     K    ++          +    +         L
Sbjct: 66  GASQLRHLVKAAQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123

Query: 399 EQEKLFKEVGEAYGILSDPTKRSRYDRGEDIMEDSGMGGH 438
           + E+L +E G      S    R   DR    +E     G+
Sbjct: 124 QIEELRQEKGFLANDTSFSDVRDIDDRLGGYIELFSTAGN 163

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.8 bits (115), Expect = 6e-07
 Identities = 30/302 (9%), Positives = 74/302 (24%), Gaps = 25/302 (8%)

Query: 16  KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL---AVSLDPRFS 72
             +     L+  S+ +   P+ A  +  R      L       + A L    +       
Sbjct: 41  AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL 100

Query: 73  KGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEAN 132
           +   +            +        +EL+     +  + +           A++   A 
Sbjct: 101 RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ--AAV 158

Query: 133 DYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVR 192
                + + D  + +  ++ +    ++  L  L+   ++                     
Sbjct: 159 APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP-------------- 204

Query: 193 GLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAF 252
                   +++L  N F             +    RA+ L   +    +  V     E+ 
Sbjct: 205 --ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESC 262

Query: 253 DIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCK 312
               E    +   +      +      L  +    E +   +     DP     L     
Sbjct: 263 KELQELEPENKWCLLT----IILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 318

Query: 313 CF 314
            F
Sbjct: 319 KF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.6 bits (104), Expect = 1e-05
 Identities = 25/273 (9%), Positives = 67/273 (24%), Gaps = 20/273 (7%)

Query: 100 ELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKA 159
             +PD   +    +  E +       S    A   +  + +L+  +     S      + 
Sbjct: 57  GANPDFATLWNCRR--EVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 114

Query: 160 ECLAHLNRLQEAQEIANSILATDKQNPDA---VFVRGLCLYYDDKMDLAVNHFQLLLKLA 216
             L+ L     A+E+       +    +     + R +           +     L+   
Sbjct: 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174

Query: 217 PDHAKAKETYKRA--KLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI------ 268
             +  +         +L          +       +  ++   A   D  + +       
Sbjct: 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRW 234

Query: 269 ------NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
                               +    E+  +      ++   L  +    +    L   KE
Sbjct: 235 LLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE 294

Query: 323 CVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEV 355
            +     +  +D  R  +   +   + L  + V
Sbjct: 295 TLQYFSTLKAVDPMRAAY-LDDLRSKFLLENSV 326

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 7/66 (10%), Positives = 14/66 (21%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             + +        L+   ++ K   E                     L      L     
Sbjct: 242 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 301

Query: 64  AVSLDP 69
             ++DP
Sbjct: 302 LKAVDP 307

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 24/202 (11%), Positives = 56/202 (27%), Gaps = 8/202 (3%)

Query: 205 AVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR 264
            +     +L   PD A       R ++L+  + E + +  A   +         L+++  
Sbjct: 48  VLELTSQILGANPDFATL--WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-- 103

Query: 265 NININSKLLHNRATVLFKMGK--YNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKE 322
               +    H+R  +L ++ +  +   +  C   LE D         R            
Sbjct: 104 --PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA 161

Query: 323 CVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRAL 382
             +         N     ++   +  L +     D      + +N    +++        
Sbjct: 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221

Query: 383 VHHPDRHTNATQAQKLEQEKLF 404
             +        +      E LF
Sbjct: 222 DPNDQSAWFYHRWLLGRAEPLF 243

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-07
 Identities = 33/113 (29%), Positives = 51/113 (45%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
             + KE GN    +     AL+CYSEAI + P+    Y NR+A Y   G Y  A +D   
Sbjct: 3   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 62

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALE 116
            V L P + KG  R+      L     A+   +   + + +NP + +  + +E
Sbjct: 63  TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 26/93 (27%), Positives = 39/93 (41%)

Query: 4  AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
          A K KE GN  YK K +  ALK Y +A  + P    Y  N+AA Y   G Y    +  + 
Sbjct: 4  ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 64 AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLK 96
          A+ +     +   +  K    +G++       K
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 11/130 (8%)

Query: 229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE 288
            K    +KE GN+ +       A   Y +A ++D  N+        N+A V F+ G YN+
Sbjct: 1   GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYI----TNQAAVYFEKGDYNK 56

Query: 289 AIADCTLALEKDPNYLKALSRRCK-------CFHALGQYKECVIDAEKIYKMDNSRENHN 341
               C  A+E      +   +  K        +    +YK+ +    K      + +   
Sbjct: 57  CRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116

Query: 342 FLEEAKRLLK 351
             ++A+++LK
Sbjct: 117 KCQQAEKILK 126

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 16/133 (12%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------AAYYGNRAAC 47
           A   KE+GN  +K  + ++A+  Y EA+    +                  +   N A C
Sbjct: 17  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 76

Query: 48  YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
           Y     Y  A+D A   + +D    K L +    N+  G    A+ NL     L+P+N  
Sbjct: 77  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 136

Query: 108 IAQESKALETMAK 120
           I    +      K
Sbjct: 137 IRNSYELCVNKLK 149

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 12/186 (6%)

Query: 238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLAL 297
           EG         + A D ++          + +S++  N   +   +    EA    T ++
Sbjct: 11  EGVLAADKKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI 63

Query: 298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLKRSEVKD 357
            +D +   A  +R   ++   +Y   + D ++       R N     +   L  +    +
Sbjct: 64  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACE 121

Query: 358 YYKILGVTKNASSDDIK-KAYRKRALVHHPD-RHTNATQA-QKLEQEKLFKEVGEAYGIL 414
               +        +  K +     A     + RH+   +A + + ++KL++ V    G L
Sbjct: 122 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL 181

Query: 415 SDPTKR 420
             P +R
Sbjct: 182 FRPNER 187

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 4e-06
 Identities = 30/180 (16%), Positives = 51/180 (28%), Gaps = 7/180 (3%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKL 63
           A     +G      K +  AL  +S         +    N    Y +L   T A      
Sbjct: 5   AISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTR 61

Query: 64  AVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE 123
           +++ D   +    ++            A  +LK        N  I  +   L+      E
Sbjct: 62  SINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 121

Query: 124 G----ASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSIL 179
                A    +  +++ A   L  A       +  K+ KA       +L E   I    L
Sbjct: 122 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWKQKLYEPVVIPVGRL 181

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVC----------------PNVAAYYGNRAAC 47
           +E  K  GNT +K + +  A+K Y++ +                   P   +   N  AC
Sbjct: 27  SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 86

Query: 48  YMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA 107
            + +  +  A+D    A+ +DP  +K L R+ +    L +   A ++LK  QE+ P++ A
Sbjct: 87  KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 146

Query: 108 IAQESKALETMAKNFEGASKAF 129
           I  E   ++   K  +   KA 
Sbjct: 147 IQAELLKVKQKIKAQKDKEKAA 168

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.1 bits (87), Expect = 7e-04
 Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 13/148 (8%)

Query: 223 KETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI------------NS 270
           K+  K   + +  K  GN  F +   + A   YT+ L+    +                 
Sbjct: 18  KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL 77

Query: 271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKI 330
             + N      KM  +  A+  C  ALE DP+  KAL RR + +  L +Y + + D +K 
Sbjct: 78  SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA 137

Query: 331 YKMD-NSRENHNFLEEAKRLLKRSEVKD 357
            ++    +     L + K+ +K  + K+
Sbjct: 138 QEIAPEDKAIQAELLKVKQKIKAQKDKE 165

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (104), Expect = 1e-05
 Identities = 31/237 (13%), Positives = 75/237 (31%), Gaps = 11/237 (4%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDD 60
           +  A+   E G     L   + A   +S+A+++ P++   +          G +  A + 
Sbjct: 34  DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93

Query: 61  AKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAK 120
               + LDP ++   + +       G    A+ +L A  + DP++P            + 
Sbjct: 94  FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP----------FRSL 143

Query: 121 NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILA 180
               A +  +    +  +       D+              ++    ++  +  A    +
Sbjct: 144 WLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS 203

Query: 181 TDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKE 237
             +   +  F  G        +D A   F+L +     +      Y   +L    ++
Sbjct: 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH-RYALLELSLLGQD 259

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 13/97 (13%), Positives = 33/97 (34%)

Query: 246 GKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK 305
            + +       + L   A   +  ++LL+ R  +   +G    A  D + AL   P+  +
Sbjct: 13  LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 72

Query: 306 ALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNF 342
             +         G +       + + ++D +    + 
Sbjct: 73  VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 109

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 34/274 (12%), Positives = 70/274 (25%), Gaps = 37/274 (13%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMY 54
           E +A+   +        K+ + A   + +A                Y     C+   G  
Sbjct: 34  EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93

Query: 55  TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKA 114
             A+D  + A+ +     +                    +     +          + ++
Sbjct: 94  VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153

Query: 115 LETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEI 174
           +    K F        A+       Y   A D                       +  + 
Sbjct: 154 VALSNKCFIKC-----ADLKALDGQY-IEASDI--------------------YSKLIKS 187

Query: 175 ANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKA 234
           +     +     D    +GLC         A    Q      P+ A ++E+     L+ A
Sbjct: 188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDA 247

Query: 235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI 268
             E  +E+       E    +   +++D   I I
Sbjct: 248 VNEGDSEQL-----SEHCKEFDNFMRLDKWKITI 276

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 15/144 (10%)

Query: 4   AEKHKEDGNTQYKLKQYSKALKCYSEAISVC---------------PNVAAYYGNRAACY 48
           +   KE G   +K  +Y +AL  Y + +S                     A + N A C+
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 72

Query: 49  MMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAI 108
           + L  ++ A++    A+ LD    KGL R+ + ++A+ D   AR++ + + +L P+N A 
Sbjct: 73  LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 132

Query: 109 AQESKALETMAKNFEGASKAFEAN 132
             +    +   +      K   AN
Sbjct: 133 KTQLAVCQQRIRRQLAREKKLYAN 156

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 6e-05
 Identities = 29/253 (11%), Positives = 61/253 (24%), Gaps = 8/253 (3%)

Query: 16  KLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG-MYTYALDDAKLAVSLDPRFSKG 74
           + ++  +A K   +AI +       +  R      L       ++     +   P+  + 
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114

Query: 75  LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDY 134
              +      L D       +  +   D  N    Q            +          Y
Sbjct: 115 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH------RQWVIQEFKLWDNELQY 168

Query: 135 RTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGL 194
              +   D   +     + + +           L+   +    ++     N  A      
Sbjct: 169 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 228

Query: 195 CLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDI 254
            L  D  +    N    LL L P H+          + +   E   +      N+     
Sbjct: 229 IL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELC 287

Query: 255 YTEALKIDARNIN 267
              A + D     
Sbjct: 288 EILAKEKDTIRKE 300

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 31/266 (11%), Positives = 73/266 (27%), Gaps = 18/266 (6%)

Query: 162 LAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAK 221
           L    R + A ++    +  +  N      R + L    K      ++            
Sbjct: 53  LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI----------- 101

Query: 222 AKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLF 281
                ++ K  +                +  +   + L  DA+N +       +R  V+ 
Sbjct: 102 TAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW----QHRQWVIQ 157

Query: 282 KMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHN 341
           +   ++  +      L++D       ++R         Y +  +   ++       +   
Sbjct: 158 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP 217

Query: 342 FLEEAKRLLKRSEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQE 401
             E A   LK               N   D          +    D + +  + Q   +E
Sbjct: 218 HNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 277

Query: 402 KLFKEVGEAYGILS---DPTKRSRYD 424
            +  +  E   IL+   D  ++  + 
Sbjct: 278 DILNKALELCEILAKEKDTIRKEYWR 303

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 33/323 (10%), Positives = 73/323 (22%), Gaps = 68/323 (21%)

Query: 30  AISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAP 89
            I         Y    A          A    + A+ L+                     
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT---------------- 78

Query: 90  TARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGV 149
                                          +F          D    M Y+   +++  
Sbjct: 79  -----------------------------VWHFRRVLLKSLQKDLHEEMNYITAIIEEQP 109

Query: 150 ASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHF 209
            +      +   +  L    +  E    IL  D +N  A   R   +      D  + + 
Sbjct: 110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV 169

Query: 210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININ 269
             LLK    +       +R  ++                +       E +K+   N +  
Sbjct: 170 DQLLKEDVRN--NSVWNQRYFVI----SNTTGYNDRAVLEREVQYTLEMIKLVPHNESA- 222

Query: 270 SKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEK 329
                N    + +    ++        L+  P++           + +      ++D  +
Sbjct: 223 ----WNYLKGILQDRGLSKYPNLLNQLLDLQPSH--------SSPYLI----AFLVDIYE 266

Query: 330 IYKMDNSRENHNFLEEAKRLLKR 352
               +      + L +A  L + 
Sbjct: 267 DMLENQCDNKEDILNKALELCEI 289

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 31/320 (9%), Positives = 80/320 (25%), Gaps = 31/320 (9%)

Query: 1   ELSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN-----VAAYYGNRAACYMMLGMYT 55
            + AE +              +A +    A+   P                     G  T
Sbjct: 9   TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELT 68

Query: 56  YALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKAL 115
            +L   +    +  +        +   I   +   A+  L+   E       +  E    
Sbjct: 69  RSLALMQQTEQMARQHDVWH-YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLE 127

Query: 116 ETMAK---NFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL---------- 162
           +           A   +       A       ++   + +  + ++   +          
Sbjct: 128 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD 187

Query: 163 --AHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHA 220
                ++L   + +  +         +A  VR +          A N  +   K    + 
Sbjct: 188 LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 247

Query: 221 KAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN--INSKLLHNRAT 278
              +   R             + + G+ + A  +  E  +           ++ L     
Sbjct: 248 HFLQGQWRNI--------ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQ 299

Query: 279 VLFKMGKYNEAIADCTLALE 298
           + ++ G+ ++A      AL+
Sbjct: 300 LYWQAGRKSDAQRVLLDALK 319

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	470
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.98
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.97
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.94
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.92
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.9
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.88
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.86
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.76
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.74
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.73
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.73
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.73
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.71
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.7
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.7
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.69
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.68
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.68
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.67
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.67
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.65
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.65
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.62
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.61
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.6
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.6
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.58
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.58
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.54
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.53
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.5
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.49
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.45
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.43
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.42
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.37
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.34
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.3
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.21
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.14
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.07
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.06
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.01
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.42
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.41
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.16
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.06
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.69
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.19
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.97
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.54
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	84.31
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	80.02

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-39  Score=301.60  Aligned_cols=326  Identities=15%  Similarity=0.112  Sum_probs=286.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy16214          7 HKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALG   86 (470)
Q Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   86 (470)
                      ++.+|..+++.|+|++|+..|+++++.+|+++.++..+|.++..+|++++|+..++++++++|+++.++..+|.++..+|
T Consensus         2 ll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH-----------------------------------------------
Q psy16214         87 DAPTARSNLKALQELDPDNPAIAQESKALETMA-----------------------------------------------  119 (470)
Q Consensus        87 ~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~-----------------------------------------------  119 (470)
                      ++++|+..+..+....|................                                               
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence            999999999999999998877655544443211                                               


Q ss_pred             ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHH
Q psy16214        120 ---------KNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVF  190 (470)
Q Consensus       120 ---------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  190 (470)
                               .....+..+...+++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|..+..+.
T Consensus       162 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  241 (388)
T d1w3ba_         162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG  241 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHH
Confidence                     12223444556688999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchH
Q psy16214        191 VRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININS  270 (470)
Q Consensus       191 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  270 (470)
                      .+|.++...|++++|+..|+++++.+|+++.++..+            |.++...|++++|+..++.++...|.    ..
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~----~~  305 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL------------ANALKEKGSVAEAEDCYNTALRLCPT----HA  305 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH------------HHHHHHHSCHHHHHHHHHHHHHHCTT----CH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHhhhccCCc----cc
Confidence            999999999999999999999999999988888877            89999999999999999999988888    45


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q psy16214        271 KLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKR  348 (470)
Q Consensus       271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~  348 (470)
                      .++..++.++...|++++|+..++++++++|+++.++..+|.++..+|++++|+..|+++++++|+ .++...|..+..
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~  384 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            668889999999999999999999999999999999999999999999999999999999999997 556666655433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-35  Score=272.53  Aligned_cols=290  Identities=19%  Similarity=0.169  Sum_probs=272.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR-----------   70 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-----------   70 (470)
                      .++..+..+|.+++..|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..+..++..+|.           
T Consensus        31 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  110 (388)
T d1w3ba_          31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA  110 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccc
Confidence            357889999999999999999999999999999999999999999999999999999999887776553           


Q ss_pred             ---------------------------------------------------------CHHHHHHHHHHHHHcCChHHHHH
Q psy16214         71 ---------------------------------------------------------FSKGLIRQIKCNIALGDAPTARS   93 (470)
Q Consensus        71 ---------------------------------------------------------~~~~~~~la~~~~~~g~~~~A~~   93 (470)
                                                                               ++.++..+|.++...|++++|..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  190 (388)
T d1w3ba_         111 LVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH  190 (388)
T ss_dssp             HHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHH
Confidence                                                                     45677888999999999999999


Q ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy16214         94 NLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQE  173 (470)
Q Consensus        94 ~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~  173 (470)
                      .++++++++|++..++..++.+            +...+++++|+..+.++....|.....+..+|.++...|++++|+.
T Consensus       191 ~~~~al~~~p~~~~~~~~l~~~------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  258 (388)
T d1w3ba_         191 HFEKAVTLDPNFLDAYINLGNV------------LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID  258 (388)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHH------------HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHhhh------------hhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999887666655            6778999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy16214        174 IANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFD  253 (470)
Q Consensus       174 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  253 (470)
                      .++++++.+|+++.++..+|.++...|++++|+..++.++...|.+...+..+            +.++...|++++|+.
T Consensus       259 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~  326 (388)
T d1w3ba_         259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL------------ANIKREQGNIEEAVR  326 (388)
T ss_dssp             HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHTTTCHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHH------------HHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888            999999999999999


Q ss_pred             HHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Q psy16214        254 IYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQ  319 (470)
Q Consensus       254 ~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  319 (470)
                      .|+++++++|+    .+.++.++|.++..+|++++|+.+|+++++++|+++.++.++|.+|.++||
T Consensus       327 ~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         327 LYRKALEVFPE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHTTSCTT----CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999    467799999999999999999999999999999999999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.9e-31  Score=240.35  Aligned_cols=274  Identities=12%  Similarity=0.069  Sum_probs=231.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIA   84 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   84 (470)
                      ...+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++++|++..++..+|.++..
T Consensus        20 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          20 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN   99 (323)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence            44689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHH
Q psy16214         85 LGDAPTARSNLKALQELDPDNPAIAQESKALETMA---KNFEGASKAFEANDYRTAMFYLDRAMDQGVAS--KTYKLMKA  159 (470)
Q Consensus        85 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~a  159 (470)
                      +|++++|+..+++++...|................   ............+.+.+|+..+.+++..+|+.  +.++..+|
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            99999999999999999998765432222111100   01111223345567888999999999998874  57788999


Q ss_pred             HHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        160 ECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       160 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .++...|++++|+..+++++..+|+++.+|..+|.++...|++++|+..|+++++++|+++.++..+            |
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l------------g  247 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL------------G  247 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------H
T ss_pred             HHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHH------------H
Confidence            9999999999999999999999999999999999999999999999999999999999999999888            9


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccc-------hHHHHHHHHHHHHHcCCHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNINI-------NSKLLHNRATVLFKMGKYNEAI  290 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------~~~~~~~la~~~~~~g~~~~A~  290 (470)
                      .++...|++++|+..|+++++++|++...       ...+|..++.++..+++.+.+.
T Consensus       248 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         248 ISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999986542       1235566666666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-29  Score=229.29  Aligned_cols=252  Identities=17%  Similarity=0.095  Sum_probs=183.0

Q ss_pred             HHHHHhhcCCc----hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214         26 CYSEAISVCPN----VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL  101 (470)
Q Consensus        26 ~~~~al~~~p~----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  101 (470)
                      .|++++...++    +....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++..+|++++|+..+.+++++
T Consensus         3 ~~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   82 (323)
T d1fcha_           3 TYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL   82 (323)
T ss_dssp             HHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc
Confidence            35555554443    34556899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH---------------HHHHHHHcC
Q psy16214        102 DPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLM---------------KAECLAHLN  166 (470)
Q Consensus       102 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~---------------~a~~~~~~~  166 (470)
                      +|++...+..++.+            +...|++++|+..+++++...|........               ....+...+
T Consensus        83 ~p~~~~~~~~la~~------------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (323)
T d1fcha_          83 KPDNQTALMALAVS------------FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS  150 (323)
T ss_dssp             CTTCHHHHHHHHHH------------HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHH
T ss_pred             cccccccccccccc------------ccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhh
Confidence            99999988666665            677899999999999999998876543211               112233445


Q ss_pred             CHHHHHHHHHHHhhcCCCC--hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16214        167 RLQEAQEIANSILATDKQN--PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV  244 (470)
Q Consensus       167 ~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (470)
                      .+.+|+..+.+++..+|+.  +.++..+|.++...|++++|+..+++++..+|++..++..+            |.++..
T Consensus       151 ~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------g~~~~~  218 (323)
T d1fcha_         151 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKL------------GATLAN  218 (323)
T ss_dssp             HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhh------------hhcccc
Confidence            5666666666666666653  34556666666666666666666666666666666666555            666666


Q ss_pred             cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy16214        245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLK  305 (470)
Q Consensus       245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  305 (470)
                      .|++++|+.+|+++++.+|+    .+.++.++|.++..+|++++|+..|+++++++|++..
T Consensus       219 ~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         219 GNQSEEAVAAYRRALELQPG----YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred             cccchhHHHHHHHHHHHhhc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence            66666666666666666666    3445666666666666666666666666666665544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.2e-25  Score=200.54  Aligned_cols=223  Identities=11%  Similarity=0.043  Sum_probs=152.0

Q ss_pred             hhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCChHHH
Q psy16214         31 ISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD-APTARSNLKALQELDPDNPAIA  109 (470)
Q Consensus        31 l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~  109 (470)
                      |..+|+...++..+|.++...+.+++|+..++++|+++|.+..+|..+|.++..+|. +++|+..++++++++|++..+|
T Consensus        36 I~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~  115 (315)
T d2h6fa1          36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  115 (315)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHH
Confidence            344566677777778888888888888888888888888888888888888777764 7777777777777777777776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHH
Q psy16214        110 QESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAV  189 (470)
Q Consensus       110 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  189 (470)
                      ..++.+            +...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++++|.+..+|
T Consensus       116 ~~~~~~------------~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~  183 (315)
T d2h6fa1         116 HHRRVL------------VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW  183 (315)
T ss_dssp             HHHHHH------------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhHH------------HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHH
Confidence            655555            33446666666666666667777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhccCC------hHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q psy16214        190 FVRGLCLYYDDK------MDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDA  263 (470)
Q Consensus       190 ~~la~~~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p  263 (470)
                      ..+|.++...+.      +++|+..+.+++..+|++..++..+            +.++.. ....++...+++++.+.|
T Consensus       184 ~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l------------~~ll~~-~~~~~~~~~~~~~~~l~~  250 (315)
T d2h6fa1         184 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYL------------KGILQD-RGLSKYPNLLNQLLDLQP  250 (315)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHH------------HHHHTT-TCGGGCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHH------------HHHHHh-cChHHHHHHHHHHHHhCC
Confidence            777777665554      4567777777777777776666655            554433 334666666666666666


Q ss_pred             cCccchHHHHHHHHHHH
Q psy16214        264 RNININSKLLHNRATVL  280 (470)
Q Consensus       264 ~~~~~~~~~~~~la~~~  280 (470)
                      ...  ...++..++.++
T Consensus       251 ~~~--~~~~~~~l~~~y  265 (315)
T d2h6fa1         251 SHS--SPYLIAFLVDIY  265 (315)
T ss_dssp             TCC--CHHHHHHHHHHH
T ss_pred             CcC--CHHHHHHHHHHH
Confidence            543  233444444444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-24  Score=194.23  Aligned_cols=207  Identities=13%  Similarity=0.053  Sum_probs=190.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM-YTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      ++++..+|.++...+.+++|+.+++++|+++|++..+|.++|.++..+|+ +++|+..++++++++|++..+|..+|.++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            56777889999999999999999999999999999999999999999875 89999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECL  162 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~  162 (470)
                      ..+|++++|+..+.++++++|++..+|..++.+            +...+++++|+..++++++++|.+..+|..++.++
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~------------~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWV------------IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH------------HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHH------------HHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHH
Confidence            999999999999999999999999999888877            55668899999999999999999999999999999


Q ss_pred             HHcCC------HHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHH
Q psy16214        163 AHLNR------LQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAK  223 (470)
Q Consensus       163 ~~~~~------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~  223 (470)
                      ...+.      +++|+..+.+++..+|++..+|..++.++...+ .+++...+++++++.|+....+
T Consensus       191 ~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~  256 (315)
T d2h6fa1         191 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPY  256 (315)
T ss_dssp             HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHH
T ss_pred             HHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHH
Confidence            88776      689999999999999999999999999876544 6889999999999888765433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.4e-25  Score=205.58  Aligned_cols=252  Identities=10%  Similarity=-0.023  Sum_probs=154.5

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHH
Q psy16214         55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALG----------DAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEG  124 (470)
Q Consensus        55 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~  124 (470)
                      ++|+..++++++++|++..+|..++.++..++          ++++|+.+++++++.+|++..++..++.+..       
T Consensus        46 ~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~-------  118 (334)
T d1dcea1          46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-------  118 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH-------
Confidence            44444444444444444444444333333222          2445555555555555555555444433311       


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChH
Q psy16214        125 ASKAFEANDYRTAMFYLDRAMDQGVASKTYK-LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMD  203 (470)
Q Consensus       125 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~  203 (470)
                         .+..+++++|+..+.+++..+|.....+ ...+.++...+.+++|+..+++++..+|.+..+|+.+|.++...|+++
T Consensus       119 ---~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~  195 (334)
T d1dcea1         119 ---RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  195 (334)
T ss_dssp             ---TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred             ---HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHH
Confidence               1222345555555555555555555443 345566666777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHc
Q psy16214        204 LAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKM  283 (470)
Q Consensus       204 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~  283 (470)
                      +|+..+++++...|.....                ...+...+..+++...+.+++...|.+...    +..++.++...
T Consensus       196 ~A~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~----~~~l~~~~~~~  255 (334)
T d1dcea1         196 DSGPQGRLPENVLLKELEL----------------VQNAFFTDPNDQSAWFYHRWLLGRAEPLFR----CELSVEKSTVL  255 (334)
T ss_dssp             CSSSCCSSCHHHHHHHHHH----------------HHHHHHHCSSCSHHHHHHHHHHSCCCCSSS----CCCCHHHHHHH
T ss_pred             HHHHHHHHhHHhHHHHHHH----------------HHHHHHhcchhHHHHHHHHHHHhCcchhhH----HHHHHHHHHHH
Confidence            7777777666666554332                223344456666777777777777765433    56667777777


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        284 GKYNEAIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       284 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      +++.+|+..+.+++..+|++..++..+|.++..+|++++|+.+|+++++++|.
T Consensus       256 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~  308 (334)
T d1dcea1         256 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  308 (334)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc
Confidence            77777777777777777777777777777777777777777777777777775

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=3.7e-25  Score=202.79  Aligned_cols=265  Identities=11%  Similarity=-0.021  Sum_probs=232.5

Q ss_pred             CCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy16214         18 KQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGM----------YTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD   87 (470)
Q Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   87 (470)
                      +..++|+.++++++..+|++..+|..++.++..++.          +.+|+..++++++.+|+++.+|..+|.+     -
T Consensus        43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~-----~  117 (334)
T d1dcea1          43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL-----L  117 (334)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----H
T ss_pred             cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHH-----H
Confidence            345899999999999999999999999998776654          7899999999999999999988776642     3


Q ss_pred             -------hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy16214         88 -------APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAE  160 (470)
Q Consensus        88 -------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~  160 (470)
                             +++|+..+.++++++|.+..++...           .+..+...+.+++|+..+++++..+|.+..++..+|.
T Consensus       118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~-----------~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~  186 (334)
T d1dcea1         118 SRLPEPNWARELELCARFLEADERNFHCWDYR-----------RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC  186 (334)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHH-----------HHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred             HHhccccHHHHHHHHHHHHhhCchhhhhhhhH-----------HHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence                   3689999999999999998876322           2334667899999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHH
Q psy16214        161 CLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGN  240 (470)
Q Consensus       161 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (470)
                      ++...|++++|+..+.+++...|.....+.    .+...+..+++...+.+++...|.....+..+            +.
T Consensus       187 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l------------~~  250 (334)
T d1dcea1         187 LLPQLHPQPDSGPQGRLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELS------------VE  250 (334)
T ss_dssp             HHHHHSCCCCSSSCCSSCHHHHHHHHHHHH----HHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCC------------HH
T ss_pred             HHHHhcCHHHHHHHHHHhHHhHHHHHHHHH----HHHHhcchhHHHHHHHHHHHhCcchhhHHHHH------------HH
Confidence            999999999999999999988877655443    34556788899999999999999988877777            89


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        241 EKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       241 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      ++...+++.+|+..+.+++..+|.    ...++..+|.++..+|++++|+.+|+++++++|.....|..++..+....
T Consensus       251 ~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~  324 (334)
T d1dcea1         251 KSTVLQSELESCKELQELEPENKW----CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN  324 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHhhCch----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhh
Confidence            999999999999999999999998    66789999999999999999999999999999999999999988887543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.2e-21  Score=180.39  Aligned_cols=288  Identities=15%  Similarity=0.033  Sum_probs=194.1

Q ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF-----SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQES  112 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l  112 (470)
                      +++...+|.+++..|++++|+..++++++..|.+     ..++..+|.++..+|++++|+..|++++++.+.........
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            3444444555555555555555555555554443     22444455555555555555555555554433322211111


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCC
Q psy16214        113 KALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQG--------VASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQ  184 (470)
Q Consensus       113 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  184 (470)
                      ..      ....+..+...+++..++..+.+++...        +........+|.++...|+++.+...+.+++...+.
T Consensus        92 ~~------~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          92 WS------LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             HH------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence            11      1222333444455555555555554431        112345667899999999999999999999987665


Q ss_pred             C-----hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy16214        185 N-----PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEAL  259 (470)
Q Consensus       185 ~-----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al  259 (470)
                      .     ..++...+.++...+++..+...+.++....+..........     ......+..+...+++++|...+++++
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~~~~~  240 (366)
T d1hz4a_         166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS-----NANKVRVIYWQMTGDKAAAANWLRHTA  240 (366)
T ss_dssp             SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH-----HHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHH-----HHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            4     346778888999999999999999988875443221111110     011223889999999999999999999


Q ss_pred             hhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy16214        260 KIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEK------DPNYLKALSRRCKCFHALGQYKECVIDAEKIYKM  333 (470)
Q Consensus       260 ~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  333 (470)
                      ...|.+.......+.++|.++...|++++|+..+++++..      .|....++..+|.++..+|++++|+..+++++++
T Consensus       241 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         241 KPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             CCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            9988877667788899999999999999999999999854      4556789999999999999999999999999987


Q ss_pred             CCC
Q psy16214        334 DNS  336 (470)
Q Consensus       334 ~p~  336 (470)
                      .+.
T Consensus       321 ~~~  323 (366)
T d1hz4a_         321 ANR  323 (366)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=5.9e-22  Score=174.31  Aligned_cols=224  Identities=16%  Similarity=0.037  Sum_probs=151.8

Q ss_pred             cCCHHHHHHHHHHHhhcC----CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHH
Q psy16214         17 LKQYSKALKCYSEAISVC----PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTAR   92 (470)
Q Consensus        17 ~g~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   92 (470)
                      ..+++.|+..+++++...    |..+.+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++..+|++++|+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            345678888888888753    3457799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy16214         93 SNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQ  172 (470)
Q Consensus        93 ~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~  172 (470)
                      ..|+++++++|+++.++                                              ..+|.++...|++++|+
T Consensus        92 ~~~~~al~~~p~~~~a~----------------------------------------------~~lg~~~~~~g~~~~A~  125 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAH----------------------------------------------LNRGIALYYGGRDKLAQ  125 (259)
T ss_dssp             HHHHHHHHHCTTCTHHH----------------------------------------------HHHHHHHHHTTCHHHHH
T ss_pred             hhhhHHHHHHhhhhhhH----------------------------------------------HHHHHHHHHHhhHHHHH
Confidence            99999998888877654                                              34455555555555555


Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHH----HhcCCH
Q psy16214        173 EIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK----FVAGKN  248 (470)
Q Consensus       173 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  248 (470)
                      ..++++++.+|++......++.++...+..+.+...........+...... .             ...+    ...+.+
T Consensus       126 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-I-------------VEFYLGNISEQTLM  191 (259)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-H-------------HHHHTTSSCHHHHH
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-H-------------HHHHHHHHHHHHHH
Confidence            555555555555555555555555555544444444343333333322111 1             0111    111223


Q ss_pred             HHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy16214        249 QEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL  304 (470)
Q Consensus       249 ~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  304 (470)
                      ..+...+...+...|.    ...+++++|.++..+|++++|+.+|++++..+|++.
T Consensus       192 ~~~~~~~~~~~~~~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         192 ERLKADATDNTSLAEH----LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHCCSHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHHHhhhcCcc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            4444444555555555    456677788888888888888888888888888763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.5e-20  Score=165.13  Aligned_cols=225  Identities=15%  Similarity=0.065  Sum_probs=173.0

Q ss_pred             ChHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q psy16214         53 MYTYALDDAKLAVSLDP----RFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKA  128 (470)
Q Consensus        53 ~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~  128 (470)
                      +.+.|+..+++++...+    ..+.+++.+|.+|..+|++++|+..|+++++++|+++                      
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~----------------------   71 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----------------------   71 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----------------------
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH----------------------
Confidence            45566666677766432    3355777788888888888877777777777666554                      


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHH
Q psy16214        129 FEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNH  208 (470)
Q Consensus       129 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~  208 (470)
                                              .++..+|.++...|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..
T Consensus        72 ------------------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~  127 (259)
T d1xnfa_          72 ------------------------EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD  127 (259)
T ss_dssp             ------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ------------------------HHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHH
Confidence                                    45667899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHH
Q psy16214        209 FQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNE  288 (470)
Q Consensus       209 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~  288 (470)
                      ++++++.+|++......+            +......+....+...........+..... ..+...++. ....+.+..
T Consensus       128 ~~~al~~~p~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~  193 (259)
T d1xnfa_         128 LLAFYQDDPNDPFRSLWL------------YLAEQKLDEKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGN-ISEQTLMER  193 (259)
T ss_dssp             HHHHHHHCTTCHHHHHHH------------HHHHHHHCHHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTS-SCHHHHHHH
T ss_pred             HHHHHhhccccHHHHHHH------------HHHHHHhhhHHHHHHHHHHhhccchhhhhh-hHHHHHHHH-HHHHHHHHH
Confidence            999999999988776665            666666666666655555555555443211 111111111 122344677


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCh
Q psy16214        289 AIADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNSR  337 (470)
Q Consensus       289 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~  337 (470)
                      +...+...+...|....+++.+|.++..+|++++|+.+|++++..+|..
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  242 (259)
T d1xnfa_         194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  242 (259)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            7778888888889999999999999999999999999999999999974

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.8e-19  Score=165.61  Aligned_cols=286  Identities=13%  Similarity=-0.012  Sum_probs=225.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch-----hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV-----AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------   71 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------   71 (470)
                      .++....+|.+++..|++++|+.+|++++...|.+     ..++..+|.++...|++++|+..+++++++.|..      
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            45677788999999999999999999999999876     4578899999999999999999999999875432      


Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         72 SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPA-IAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                      ..++..++.++...|++..|...+.+++.+.+.... .....+.+     ....+..+...++++.+...+.+++...+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~-----~~~la~~~~~~~~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL-----VRIRAQLLWAWARLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHH-----HHHHHHHHHHhcchhhhHHHHHHHHHHhhh
Confidence            457788999999999999999999999875432110 00001111     123455577889999999999999987554


Q ss_pred             C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCC-------hHHHHHHHHHHhccCChHHHHHHHHHHHhhCCC
Q psy16214        151 S-----KTYKLMKAECLAHLNRLQEAQEIANSILATDKQN-------PDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPD  218 (470)
Q Consensus       151 ~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~  218 (470)
                      .     ...+...+.++...+++.++...+.++....+..       ..++..++.++...|++++|...+++++...|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  245 (366)
T d1hz4a_         166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA  245 (366)
T ss_dssp             SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred             hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence            3     4567778899999999999999999887754332       346778899999999999999999999988776


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--CccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        219 HAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDAR--NININSKLLHNRATVLFKMGKYNEAIADCTLA  296 (470)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (470)
                      +.......        ....|.++...|++++|+..+++++.....  .......++..+|.++..+|++++|+..++++
T Consensus       246 ~~~~~~~~--------~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         246 NNHFLQGQ--------WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             TCGGGHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            54322111        112399999999999999999999865322  22225688999999999999999999999999


Q ss_pred             HHhCC
Q psy16214        297 LEKDP  301 (470)
Q Consensus       297 l~~~p  301 (470)
                      +++.+
T Consensus       318 l~l~~  322 (366)
T d1hz4a_         318 LKLAN  322 (366)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98743

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.1e-19  Score=134.62  Aligned_cols=113  Identities=28%  Similarity=0.448  Sum_probs=109.4

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+..+...|+.++..|+|++|+..|+++|+.+|+++.+|.++|.++..+|++++|+..++++++++|+++.+|+.+|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKAL  115 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~  115 (470)
                      ..+|++++|+..|+++++++|+++.++..++.+
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999998877766

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-17  Score=133.67  Aligned_cols=114  Identities=34%  Similarity=0.570  Sum_probs=109.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .++.+..+|+.++..|+|++|+.+|+++++.+|+++.+|.++|.+++.+|++++|+..|+++++++|+++.++..+|.++
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALE  116 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  116 (470)
                      ..+|++++|+..+++++.++|+++.++..+..+.
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999887776664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=5.2e-17  Score=122.78  Aligned_cols=110  Identities=26%  Similarity=0.420  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        234 AKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       234 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                      .+.++|..++..|++++|+..|++++..+|+    .+.+|.++|.++..+|++++|+..+.++++++|+++.+|+++|.+
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~   80 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH----NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   80 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHH
Confidence            3456799999999999999999999999999    456799999999999999999999999999999999999999999


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q psy16214        314 FHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAK  347 (470)
Q Consensus       314 ~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~  347 (470)
                      +..+|++++|+..|+++++++|+ +++...+.+++
T Consensus        81 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          81 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            99999999999999999999998 66666665553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=7.7e-17  Score=143.45  Aligned_cols=235  Identities=15%  Similarity=0.121  Sum_probs=167.3

Q ss_pred             cHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-
Q psy16214          3 SAEKHKEDGNTQYKLK-------------QYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLD-   68 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g-------------~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-   68 (470)
                      +|+.++..+......+             +|++|.++|.+              .|.+|...++|++|+..|.+++++. 
T Consensus         3 ~~~~~l~~aek~~~~~~~~~~~~~~~~~~~~~~Aa~~y~~--------------aa~~y~~~~~~~~A~~~y~kA~~~~~   68 (290)
T d1qqea_           3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQ--------------AATIYRLRKELNLAGDSFLKAADYQK   68 (290)
T ss_dssp             CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHH--------------HHHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhcCcchhHHHHhcCCccccHHHHHHHHHH--------------HHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            4566666666665533             45666655554              5889999999999999999999973 


Q ss_pred             -----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHH
Q psy16214         69 -----PRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE-ANDYRTAMFYLD  142 (470)
Q Consensus        69 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~  142 (470)
                           +....++..+|.||..+|++++|++++++++.+.+...........      ....+..+.. .+++++|+..+.
T Consensus        69 ~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~A~~~~~  142 (290)
T d1qqea_          69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF------KFELGEILENDLHDYAKAIDCYE  142 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH------HHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH------HHHHHHhHhhHHHHHHHHHHHHH
Confidence                 2235689999999999999999999999999987655432211111      1222333433 599999999999


Q ss_pred             HHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCCh-------HHHHHHHHHHhccCChHHHHHHH
Q psy16214        143 RAMDQGVA------SKTYKLMKAECLAHLNRLQEAQEIANSILATDKQNP-------DAVFVRGLCLYYDDKMDLAVNHF  209 (470)
Q Consensus       143 ~~l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~  209 (470)
                      +++.+.+.      ...++..+|.++...|+|++|+..|++++...|.++       ..+...+.++...++++.|...+
T Consensus       143 ~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~  222 (290)
T d1qqea_         143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL  222 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            99877432      245678899999999999999999999999887764       35678899999999999999999


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhccc
Q psy16214        210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV--AGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~p~  264 (470)
                      +++++.+|.....+... .+      ......+..  .+.+++|+..|+++.+++|-
T Consensus       223 ~~~~~~~~~~~~sre~~-~l------~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         223 QEGQSEDPNFADSRESN-FL------KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             HGGGCC---------HH-HH------HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHhCCCccchHHHH-HH------HHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence            99999998766543221 00      001222222  45689999999887777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.5e-15  Score=136.19  Aligned_cols=138  Identities=9%  Similarity=0.025  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHh-ccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Q psy16214        154 YKLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLY-YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLL  232 (470)
Q Consensus       154 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~  232 (470)
                      ++..++......++++.|..+|.++++..|.+...+...+.... ..|+.+.|..+|++++...|+++..+..+      
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y------  209 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY------  209 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHH------
Confidence            34445555556666666666666666666666666666655432 34566666666666666666666665555      


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY  303 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  303 (470)
                            +..+...|+++.|..+|++++...|.++.....+|..........|+.+.+..+++++.+..|..
T Consensus       210 ------~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~  274 (308)
T d2onda1         210 ------IDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE  274 (308)
T ss_dssp             ------HHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred             ------HHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence                  55555666666666666666665554433223344444444455555555555555555555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.1e-17  Score=136.98  Aligned_cols=149  Identities=14%  Similarity=0.003  Sum_probs=122.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      +-.++..|..++..|+|++|++.|+++   .|.++.+++++|.+|..+|++++|+..|+++++++|+++.+|+++|.++.
T Consensus         5 ~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           5 AISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            456788999999999999999999874   45578899999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLA  163 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~  163 (470)
                      .+|++++|+..|++++...+.+..+..                  ..            ..+........+++++|.++.
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~------------------~~------------~~~~~~~~~~e~~~n~a~~~~  131 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQLIDY------------------KI------------LGLQFKLFACEVLYNIAFMYA  131 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEEC------------------GG------------GTBCCEEEHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhCccCchHHH------------------HH------------hhhhcccchHHHHHHHHHHHH
Confidence            999999999999999988776643200                  00            000001122356778888899


Q ss_pred             HcCCHHHHHHHHHHHhhcCCCC
Q psy16214        164 HLNRLQEAQEIANSILATDKQN  185 (470)
Q Consensus       164 ~~~~~~~A~~~~~~~l~~~p~~  185 (470)
                      ..|++++|++.+..++...|..
T Consensus       132 ~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         132 KKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HCCCHHHHHHHHHHHHhcCCCc
Confidence            9999999999999988888864

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.3e-17  Score=140.18  Aligned_cols=107  Identities=32%  Similarity=0.461  Sum_probs=102.5

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKC   81 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~   81 (470)
                      .+++.+...|+.++..|+|++|+..|+++|.++|+++.+|.++|.||..+|++++|+..|+++++++|+++.+|+.+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAI  108 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~  108 (470)
                      |..+|++++|+..|+++++++|++...
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            999999999999999999988865543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=6.4e-18  Score=161.99  Aligned_cols=228  Identities=8%  Similarity=-0.010  Sum_probs=142.0

Q ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214         22 KALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQEL  101 (470)
Q Consensus        22 ~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  101 (470)
                      +|+++|++|+.+.|+.+.++.++|.++...+++++|   |+++|..+|+...++...+.+.  ...+..+++.++...+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999887   8899999998766654333322  22356778888887765


Q ss_pred             CCCC--hHHHHH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        102 DPDN--PAIAQE-SKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNRLQEAQEIANSI  178 (470)
Q Consensus       102 ~p~~--~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  178 (470)
                      ....  ...... ++.+            ....+.|+.|+..+.+++..+|.+...+..+|.++...+++++|+..+.++
T Consensus        79 ~~~~~~~~~~~~~~~~l------------~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  146 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFL------------EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS  146 (497)
T ss_dssp             SSCTTTTHHHHHHHHHH------------HHHHHHHHHHHHHHTC-------------------------------CCHH
T ss_pred             ccCccHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHH
Confidence            4322  221111 1111            112344566777777777777877778888888888888888888888777


Q ss_pred             hhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy16214        179 LATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEA  258 (470)
Q Consensus       179 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  258 (470)
                      +..+|  ..++..+|.++...+++++|+.+|++++.++|++...+..+            |.++...|++.+|+.+|.++
T Consensus       147 l~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~L------------g~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         147 CSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQL------------AILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             HHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHH------------HHHHHHTTCHHHHHHHHHHH
T ss_pred             hCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHH------------HHHHHHcCCHHHHHHHHHHH
Confidence            76655  35677788888888888888888888888888888877777            88888888888888888888


Q ss_pred             HhhcccCccchHHHHHHHHHHHHHcC
Q psy16214        259 LKIDARNININSKLLHNRATVLFKMG  284 (470)
Q Consensus       259 l~~~p~~~~~~~~~~~~la~~~~~~g  284 (470)
                      +...|.    .+.++.+++.++.+..
T Consensus       213 l~~~~~----~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         213 IAVKFP----FPAASTNLQKALSKAL  234 (497)
T ss_dssp             HSSSBC----CHHHHHHHHHHHHHHT
T ss_pred             HhCCCC----CHHHHHHHHHHHHHhh
Confidence            887776    4566777777765443

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=6e-18  Score=114.29  Aligned_cols=68  Identities=47%  Similarity=0.800  Sum_probs=61.6

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      .++||.+|||..+++.++|+++|+++++++|||++.+++     .++..|+.|++||+||+||.+|..||..+
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~-----~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g   69 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-----EAEAKFKEIKEAYEVLTDSQKRAAYDQYG   69 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTC-----HHHHHHHHHHHHHHHTTSSHHHHHHHHHT
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCCh-----HHHHHHHHHHHHHHhcCCHHHHHHHHHhC
Confidence            468999999999999999999999999999999987632     45778999999999999999999999743

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.3e-16  Score=128.93  Aligned_cols=132  Identities=18%  Similarity=0.074  Sum_probs=95.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAK  235 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~  235 (470)
                      +..|.++...|+|++|++.|.++   .|.++.+|+++|.++..+|++++|+..|+++++++|+++.++..+         
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~---------   76 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQR---------   76 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH---------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHH---------
Confidence            35677888888888888888764   455677888888888888888888888888888888888888777         


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNINI------------NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                         |.++..+|++++|+..|++++...+.+...            ...+++++|.++..+|++++|++.+.+++.+.|+
T Consensus        77 ---g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          77 ---GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             ---HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             ---HHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence               888888888888888888888765554321            1344555555555555555555555555555554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.3e-16  Score=125.71  Aligned_cols=121  Identities=25%  Similarity=0.315  Sum_probs=110.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV---------------AAYYGNRAACYMMLGMYTYALDDAKLAVSL   67 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   67 (470)
                      .+..+...|+.++..|+|++|+..|+++|...|..               ..++.++|.||+.+|++++|+..+++++.+
T Consensus        12 ~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~   91 (170)
T d1p5qa1          12 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL   91 (170)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc
Confidence            36678899999999999999999999999987643               467788999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q psy16214         68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFE  123 (470)
Q Consensus        68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~  123 (470)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+........
T Consensus        92 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          92 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988888866554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.5e-15  Score=133.11  Aligned_cols=231  Identities=11%  Similarity=0.006  Sum_probs=186.4

Q ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC
Q psy16214         90 TARSNLKALQELDPDNPAIAQESKALETMAKNFEGA--SKAFEANDYRTAMFYLDRAMDQ-GVASKTYKLMKAECLAHLN  166 (470)
Q Consensus        90 ~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~~  166 (470)
                      .+..+|++++...|.++.+|...+......+.....  ......+..++|...+++++.. .|.+..++...+.++...|
T Consensus        34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~  113 (308)
T d2onda1          34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM  113 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            344556666666666666665555543332221110  0011224567888999999975 7888999999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCChH-HHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q psy16214        167 RLQEAQEIANSILATDKQNPD-AVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEK-FV  244 (470)
Q Consensus       167 ~~~~A~~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~  244 (470)
                      +++.|...|++++...|.+.. +|...+......|+++.|+..|++++...|.+...+...            +... ..
T Consensus       114 ~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~------------a~~e~~~  181 (308)
T d2onda1         114 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA------------ALMEYYC  181 (308)
T ss_dssp             CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH------------HHHHHHT
T ss_pred             cHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH------------HHHHHHh
Confidence            999999999999999998754 789999999999999999999999999999998887766            6554 44


Q ss_pred             cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCH
Q psy16214        245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----LKALSRRCKCFHALGQY  320 (470)
Q Consensus       245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~  320 (470)
                      .++.+.|..+|++++...|++    ..+|...+..+...|+++.|..+|++++...|.+    ...|..........|+.
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~----~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~  257 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDI----PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred             ccCHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCH
Confidence            689999999999999999995    4669999999999999999999999999987754    45777888888889999


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy16214        321 KECVIDAEKIYKMDNS  336 (470)
Q Consensus       321 ~~A~~~~~~a~~~~p~  336 (470)
                      +.+...++++.++.|+
T Consensus       258 ~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         258 ASILKVEKRRFTAFRE  273 (308)
T ss_dssp             HHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHCcc
Confidence            9999999999999986

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.5e-16  Score=123.29  Aligned_cols=116  Identities=24%  Similarity=0.421  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214        231 LLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR  310 (470)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (470)
                      ....+..+|+.++..|+|++|+.+|+++++++|+    ...+|.++|.++..+|++++|+..|+++++++|+++.++..+
T Consensus         9 ~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_           9 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS----NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHhhhccccchh----hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH
Confidence            3444556799999999999999999999999999    567799999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214        311 CKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL  350 (470)
Q Consensus       311 a~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~  350 (470)
                      |.++..+|++++|+.++++++.++|+ ..+...+.++...+
T Consensus        85 g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~  125 (159)
T d1a17a_          85 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  125 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998 55565665554433

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.1e-17  Score=118.26  Aligned_cols=75  Identities=31%  Similarity=0.539  Sum_probs=67.2

Q ss_pred             ccccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCc-cHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        353 SEVKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNA-TQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       353 ~~~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~-~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      ...++||.+|||..+++.++|+++|++++++||||++... +......++++|+.|++||+||+||++|+.||...
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~   88 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR   88 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence            3457999999999999999999999999999999998764 45567789999999999999999999999999653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.68  E-value=8.2e-16  Score=122.19  Aligned_cols=116  Identities=27%  Similarity=0.302  Sum_probs=105.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----------------hHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------AAYYGNRAACYMMLGMYTYALDDAKLAVS   66 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~   66 (470)
                      .+..+...|+.++..|+|.+|+..|++++...|..                ..++.++|.||+.+|++++|+.+++++++
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            45678999999999999999999999999875532                35778999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q psy16214         67 LDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETM  118 (470)
Q Consensus        67 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  118 (470)
                      ++|.++.+|+++|.++..+|++++|+..|+++++++|++..+...+..+...
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998777766433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.68  E-value=9.5e-16  Score=124.02  Aligned_cols=120  Identities=27%  Similarity=0.368  Sum_probs=108.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc---------------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN---------------VAAYYGNRAACYMMLGMYTYALDDAKLAVSL   67 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   67 (470)
                      .++.+...|+.++..|+|.+|+..|++++...|.               ...++.++|.||..+|++++|+..+++++.+
T Consensus        14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l   93 (168)
T d1kt1a1          14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL   93 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence            4678999999999999999999999999975432               2466889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy16214         68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF  122 (470)
Q Consensus        68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  122 (470)
                      +|+++.+++++|.++..+|++++|+..|.++++++|+++.+...++.+.......
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            9999999999999999999999999999999999999999988888876555433

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.6e-15  Score=134.85  Aligned_cols=209  Identities=13%  Similarity=0.054  Sum_probs=161.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCC------
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVC------PNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRF------   71 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~------   71 (470)
                      ++.|...|+.+...++|++|+.+|.+++++.      +..+.++.++|.||..+|++++|+..+++++++.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            5678899999999999999999999999873      2346789999999999999999999999999986544      


Q ss_pred             HHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy16214         72 SKGLIRQIKCNIA-LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVA  150 (470)
Q Consensus        72 ~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~  150 (470)
                      ..++..+|.++.. .|++++|++.|++++++.+...... ..+.+     ....|..+...|+|++|+..+++++...+.
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~-~~~~~-----~~~la~~~~~~g~y~~A~~~~~~~~~~~~~  190 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA-LSNKC-----FIKCADLKALDGQYIEASDIYSKLIKSSMG  190 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH-HHHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchh-hhhhH-----HHHHHHHHHHcChHHHHHHHHHHHHHhCcc
Confidence            5678889988865 6999999999999998755432211 11122     234456688999999999999999998776


Q ss_pred             CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChH-----HHHHHHHHHhc--cCChHHHHHHHHHHHhhC
Q psy16214        151 SK-------TYKLMKAECLAHLNRLQEAQEIANSILATDKQNPD-----AVFVRGLCLYY--DDKMDLAVNHFQLLLKLA  216 (470)
Q Consensus       151 ~~-------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-----~~~~la~~~~~--~g~~~~A~~~~~~~l~~~  216 (470)
                      ..       ..+...+.++...+++..|...++++++.+|..+.     ....+..++..  .+.+++|+..|.++.+++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             chhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence            64       45677888999999999999999999999986544     33444444443  356899999998888777


Q ss_pred             CC
Q psy16214        217 PD  218 (470)
Q Consensus       217 p~  218 (470)
                      |.
T Consensus       271 ~~  272 (290)
T d1qqea_         271 KW  272 (290)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.67  E-value=2e-15  Score=119.96  Aligned_cols=124  Identities=27%  Similarity=0.184  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy16214        229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI------------NSKLLHNRATVLFKMGKYNEAIADCTLA  296 (470)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~a  296 (470)
                      +.......+.|+.++..|+|.+|+..|++++...+.....            ...++.++|.+|.++|++++|+.+|+++
T Consensus        14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a   93 (153)
T d2fbna1          14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV   93 (153)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence            3444556677999999999999999999999876543321            2357889999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhhc
Q psy16214        297 LEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLKR  352 (470)
Q Consensus       297 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~~  352 (470)
                      +.++|+++.+|+++|.++..+|++++|+.+|+++++++|+ .++...+..+...+++
T Consensus        94 l~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1          94 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998 6777777777666644

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-17  Score=158.49  Aligned_cols=229  Identities=8%  Similarity=-0.030  Sum_probs=157.8

Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy16214         55 TYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDY  134 (470)
Q Consensus        55 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  134 (470)
                      -+|+++|++|+++.|+.+.+++.+|.++...+++++|   |++++..+|+..........+.              +..|
T Consensus         3 ~eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--------------~~~y   65 (497)
T d1ya0a1           3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--------------NHAF   65 (497)
T ss_dssp             HHHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--------------HHHT
T ss_pred             HHHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--------------HHHH
Confidence            3799999999999999999999999999999999876   8899998887655443222221              1123


Q ss_pred             HHHHHHHHHHHHhC--CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHH
Q psy16214        135 RTAMFYLDRAMDQG--VASKTY-KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQL  211 (470)
Q Consensus       135 ~~A~~~~~~~l~~~--p~~~~~-~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  211 (470)
                      ..++..++...+..  +..... ...++.+....+.|+.|+..+.+++..+|.+...+..+|.++...|++++|+..+.+
T Consensus        66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~  145 (497)
T d1ya0a1          66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSS  145 (497)
T ss_dssp             HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCH
T ss_pred             HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHH
Confidence            45666666666543  222222 233456666788999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHH
Q psy16214        212 LLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIA  291 (470)
Q Consensus       212 ~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~  291 (470)
                      ++..+|.  .++..+            |.++...+++++|+.+|++|+.++|++    +.+|+++|.++...|++.+|+.
T Consensus       146 al~~~~~--~~~~~L------------G~l~~~~~~~~~A~~~y~~A~~l~P~~----~~~~~~Lg~~~~~~~~~~~A~~  207 (497)
T d1ya0a1         146 SCSYICQ--HCLVHL------------GDIARYRNQTSQAESYYRHAAQLVPSN----GQPYNQLAILASSKGDHLTTIF  207 (497)
T ss_dssp             HHHHHHH--HHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHCTTB----SHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhCCCHH--HHHHHH------------HHHHHHcccHHHHHHHHHHHHHHCCCc----hHHHHHHHHHHHHcCCHHHHHH
Confidence            9887653  344444            999999999999999999999999994    5679999999999999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhC
Q psy16214        292 DCTLALEKDPNYLKALSRRCKCFHALG  318 (470)
Q Consensus       292 ~~~~al~~~p~~~~~~~~la~~~~~~g  318 (470)
                      +|.+++..+|..+.++.+++.++....
T Consensus       208 ~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         208 YYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999886544

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.1e-17  Score=110.19  Aligned_cols=67  Identities=49%  Similarity=0.886  Sum_probs=60.9

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCC
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGED  428 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~  428 (470)
                      ++||++|||+..++.++|+++|+++++++|||++..+      .+.+.|+.|.+||+||+||++|+.||..+.
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~------~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~   69 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEP------GAEEKFKEIAEAYDVLSDPRKREIFDRYGE   69 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCT------THHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccch------hHHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence            5899999999999999999999999999999998763      356679999999999999999999997544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.65  E-value=2.3e-15  Score=122.01  Aligned_cols=119  Identities=27%  Similarity=0.347  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhc----------------CCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISV----------------CPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSL   67 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~   67 (470)
                      ++.+...|..++..|+|.+|+..|+++|..                +|..+.++.++|.++..+|++++|+..+++++++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            456788999999999999999999999864                4566788999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy16214         68 DPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNF  122 (470)
Q Consensus        68 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  122 (470)
                      +|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+.......
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888876554433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.3e-15  Score=120.91  Aligned_cols=123  Identities=23%  Similarity=0.288  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCcc-----------chHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214        229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNIN-----------INSKLLHNRATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (470)
                      +.....+.+.|+.++..|++++|+..|++++...|....           ....++.++|.||.++|++++|+.++++++
T Consensus        10 ~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al   89 (170)
T d1p5qa1          10 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL   89 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhh
Confidence            344555667799999999999999999999998776432           134678899999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214        298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK  351 (470)
Q Consensus       298 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~  351 (470)
                      .++|+++.+++.+|.++..+|++++|+.+|+++++++|+ ..+...+..+...++
T Consensus        90 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          90 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999997 667777766655543

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.65  E-value=2.6e-17  Score=121.64  Aligned_cols=67  Identities=24%  Similarity=0.361  Sum_probs=59.7

Q ss_pred             cccchhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC
Q psy16214        354 EVKDYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI  429 (470)
Q Consensus       354 ~~~~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~  429 (470)
                      +..++|++|||.+++  +..+||+|||++++++||||+++         .++|+.|++||+||+|+++|+.||.....
T Consensus         6 ~~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~---------~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD---------EEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT---------TTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhh---------HHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            357899999999998  67799999999999999999876         24699999999999999999999986544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.9e-15  Score=114.98  Aligned_cols=116  Identities=24%  Similarity=0.346  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Q psy16214        232 LKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYL-------  304 (470)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-------  304 (470)
                      ...+.+.|+.++..|+|++|+.+|+++++++|+    .+.++.++|.+|..+|++++|+..|+++++++|+++       
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a   79 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT----NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA   79 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc----cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            344566799999999999999999999999999    456799999999999999999999999999988774       


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHHhh
Q psy16214        305 KALSRRCKCFHALGQYKECVIDAEKIYKMDNSRENHNFLEEAKRLLK  351 (470)
Q Consensus       305 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~l~~~~~~~~  351 (470)
                      .++..+|.++..++++++|+.+|++++..+|++++...+..++..++
T Consensus        80 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~~~~k~lk  126 (128)
T d1elra_          80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            57778888999999999999999999999999888888877766554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.63  E-value=8.8e-16  Score=114.81  Aligned_cols=96  Identities=17%  Similarity=0.075  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNI   83 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~   83 (470)
                      .+.++.+|..++..|++++|+..|++++..+|+++.+|..+|.++...|++++|+..++++++++|+++.+++.+|.+|.
T Consensus        16 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          16 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCChHHHHHHHHHHH
Q psy16214         84 ALGDAPTARSNLKALQ   99 (470)
Q Consensus        84 ~~g~~~~A~~~~~~~l   99 (470)
                      .+|++++|++++++.+
T Consensus        96 ~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          96 NEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHh
Confidence            9999999999999875

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.6e-15  Score=115.28  Aligned_cols=108  Identities=25%  Similarity=0.259  Sum_probs=97.8

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCH-------HH
Q psy16214          2 LSAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFS-------KG   74 (470)
Q Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~   74 (470)
                      +.+..+.++|+.++..|+|++|+.+|+++|+++|+++.++.++|.+|..+|+|++|+..++++++++|.+.       .+
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999988764       46


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHH
Q psy16214         75 LIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQ  110 (470)
Q Consensus        75 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  110 (470)
                      +..+|.++..++++++|+.+|++++..+|+ ++...
T Consensus        82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~  116 (128)
T d1elra_          82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLK  116 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHH
Confidence            777888899999999999999999998775 44433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.62  E-value=1.2e-14  Score=117.52  Aligned_cols=122  Identities=20%  Similarity=0.218  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc-----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214        229 AKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI-----------NSKLLHNRATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (470)
                      +.......+.|+.++..|+|.+|+..|++++...|.....           ...++.++|.||..+|++++|+.++++++
T Consensus        12 ~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al   91 (168)
T d1kt1a1          12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL   91 (168)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhh
Confidence            3445556677999999999999999999999765543321           34678899999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHh
Q psy16214        298 EKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLL  350 (470)
Q Consensus       298 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~  350 (470)
                      .++|+++.+++++|.++..+|++++|+.+|+++++++|+ .++...+..+...+
T Consensus        92 ~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          92 GLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998 56666666665544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.9e-15  Score=126.55  Aligned_cols=98  Identities=31%  Similarity=0.420  Sum_probs=93.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCF  314 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  314 (470)
                      +.+.|+.++..|+|++|+..|++++.++|.    ++.+|.++|.+|..+|++++|+..|+++++++|+++.+|+++|.+|
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~----~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPL----VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            455699999999999999999999999999    5677999999999999999999999999999999999999999999


Q ss_pred             HHhCCHHHHHHHHHHHHhcCCC
Q psy16214        315 HALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       315 ~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      ..+|++++|+..|+++++++|+
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcc
Confidence            9999999999999999999885

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=4.8e-16  Score=105.60  Aligned_cols=69  Identities=20%  Similarity=0.429  Sum_probs=63.7

Q ss_pred             chhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccC
Q psy16214        357 DYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDR  425 (470)
Q Consensus       357 ~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~  425 (470)
                      +||++||++..+  +.++|+++|+++++.+|||+....++.+++.++..|..|++||+||+||.+|+.|+-
T Consensus         2 nyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll   72 (76)
T d1fpoa1           2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLL   72 (76)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             ChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            689999999855  488999999999999999999988888888899999999999999999999999973

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.1e-15  Score=112.95  Aligned_cols=110  Identities=10%  Similarity=0.009  Sum_probs=99.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhcCCCC--HHHHHHHHHHH
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLG---MYTYALDDAKLAVSLDPRF--SKGLIRQIKCN   82 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~~   82 (470)
                      -.+++.+...+++++|.+.|++++..+|.++.+++++|.+++..+   ++.+|+..+++++..+|..  ..+++.+|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            357788999999999999999999999999999999999998754   5567999999999998765  45899999999


Q ss_pred             HHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q psy16214         83 IALGDAPTARSNLKALQELDPDNPAIAQESKALET  117 (470)
Q Consensus        83 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  117 (470)
                      ..+|++++|+.+|+++++++|++..+...+..+..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~  117 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK  117 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            99999999999999999999999998877776643

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.58  E-value=4.1e-16  Score=104.89  Aligned_cols=66  Identities=18%  Similarity=0.442  Sum_probs=59.7

Q ss_pred             ccccchhhhccCCCCC--CHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCC
Q psy16214        353 SEVKDYYKILGVTKNA--SSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGE  427 (470)
Q Consensus       353 ~~~~~~y~~lg~~~~~--~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~  427 (470)
                      .+..++|++||++.++  +..+|+++||+++++||||++.+         +++|++|++||++|+|+.+|.+||.|.
T Consensus         8 ~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~---------~e~~~~in~Ay~~L~d~~~r~~~~~~~   75 (79)
T d1fafa_           8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS---------HALMQELNSLWGTFKTEVYNLRMNLGG   75 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC---------HHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCC---------HHHHHHHHHHHHHHCCHHHHHHHccCC
Confidence            3457899999999987  88999999999999999999866         457999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=3.8e-14  Score=114.64  Aligned_cols=117  Identities=26%  Similarity=0.348  Sum_probs=101.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcccCc------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy16214        235 KKEEGNEKFVAGKNQEAFDIYTEALKIDARNI------------NINSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN  302 (470)
Q Consensus       235 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (470)
                      ....|..++..|++.+|+..|++++...+...            +....++.++|.++.++|++++|+..|+++++++|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            44559999999999999999999986543211            114678899999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHhh
Q psy16214        303 YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS-RENHNFLEEAKRLLK  351 (470)
Q Consensus       303 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~l~~~~~~~~  351 (470)
                      ++.+|+++|.++..+|++++|+..|+++++++|+ .++...|..+...++
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998 667777777766554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.54  E-value=6.7e-12  Score=109.43  Aligned_cols=83  Identities=16%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q psy16214        245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----  316 (470)
Q Consensus       245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----  316 (470)
                      ..+...+..+++.+.+.  .    ++.+.+++|.++..    ..++++|+.+|+++.+.  .++.+++.+|.+|..    
T Consensus       159 ~~~~~~~~~~~~~a~~~--g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~  230 (265)
T d1ouva_         159 PKDLKKALASYDKACDL--K----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGV  230 (265)
T ss_dssp             CCCHHHHHHHHHHHHHT--T----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSS
T ss_pred             ccccccchhhhhccccc--c----ccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCC
Confidence            34555666666666543  2    24567888888876    66888899999888876  467888889998885    


Q ss_pred             hCCHHHHHHHHHHHHhcCC
Q psy16214        317 LGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       317 ~g~~~~A~~~~~~a~~~~p  335 (470)
                      ..++++|+.+|+++.+..+
T Consensus       231 ~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         231 TRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             SCCSTTHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHCcC
Confidence            4478889999999988876

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.54  E-value=5.2e-14  Score=104.97  Aligned_cols=90  Identities=11%  Similarity=-0.001  Sum_probs=86.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q psy16214        238 EGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKCFHAL  317 (470)
Q Consensus       238 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  317 (470)
                      .|..++..|++++|+..|++++..+|+    .+.+|..+|.++..+|++++|+.+++++++++|+++.+++.+|.+|...
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc----cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            399999999999999999999999999    5677999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy16214        318 GQYKECVIDAEKIY  331 (470)
Q Consensus       318 g~~~~A~~~~~~a~  331 (470)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=3e-14  Score=111.53  Aligned_cols=110  Identities=11%  Similarity=0.055  Sum_probs=96.5

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHc----------CChHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16214         13 TQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMML----------GMYTYALDDAKLAVSLDPRFSKGLIRQIKCN   82 (470)
Q Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   82 (470)
                      .+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +.+++|+..|+++++++|+++.+++++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            455677899999999999999999999999999999854          4568999999999999999999999999999


Q ss_pred             HHcCC-----------hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q psy16214         83 IALGD-----------APTARSNLKALQELDPDNPAIAQESKALETMAKNF  122 (470)
Q Consensus        83 ~~~g~-----------~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~  122 (470)
                      ..+|+           +++|+++|+++++++|++..++..++......+.+
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            88764           68999999999999999999888877765444333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.50  E-value=1.2e-11  Score=107.82  Aligned_cols=230  Identities=13%  Similarity=0.115  Sum_probs=181.5

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH----cCChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMM----LGMYTYALDDAKLAVSLDPRFSKGLIRQ   78 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l   78 (470)
                      +|++++.+|..++..+++.+|+++|+++.+.  .++.+++.+|.+|..    ..++..|...++.+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            5889999999999999999999999999876  578899999999998    67999999999998764  478888899


Q ss_pred             HHHHHH----cCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q psy16214         79 IKCNIA----LGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTY  154 (470)
Q Consensus        79 a~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  154 (470)
                      |.++..    ..+.+.|...++.+....+  ..+...++..+..        ..........++..+.....  +.....
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~--------~~~~~~~~~~a~~~~~~~~~--~~~~~~  144 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHD--------GKVVTRDFKKAVEYFTKACD--LNDGDG  144 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH--------CSSSCCCHHHHHHHHHHHHH--TTCHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccC--------CCcccchhHHHHHHhhhhhc--ccccch
Confidence            988875    4678999999999987654  3333333332111        01224566777777776554  456778


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhc----cCChHHHHHHHHHHHhhCCChHHHHHHH
Q psy16214        155 KLMKAECLAH----LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYY----DDKMDLAVNHFQLLLKLAPDHAKAKETY  226 (470)
Q Consensus       155 ~~~~a~~~~~----~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~  226 (470)
                      +..+|.++..    ..+...+...++.+.+  +.++.+++.+|.++..    ..++++|+.+|+++.+..  ++.+...+
T Consensus       145 ~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~L  220 (265)
T d1ouva_         145 CTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNL  220 (265)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             hhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHH
Confidence            8889999986    4667788888888775  5689999999999986    678999999999998874  56666666


Q ss_pred             HHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhccc
Q psy16214        227 KRAKLLKAKKEEGNEKFV----AGKNQEAFDIYTEALKIDAR  264 (470)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~p~  264 (470)
                                  |.++..    ..++++|+++|+++......
T Consensus       221 ------------G~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         221 ------------GAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             ------------HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             ------------HHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence                        888876    45899999999999887654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-13  Score=103.36  Aligned_cols=94  Identities=10%  Similarity=-0.026  Sum_probs=45.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q psy16214        239 GNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMG---KYNEAIADCTLALEKDPNY--LKALSRRCKC  313 (470)
Q Consensus       239 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~--~~~~~~la~~  313 (470)
                      ++.+...+++++|.+.|++++..+|.    .+.+++++|+++.+.+   ++++|+..|++++..+|..  ..+++.+|.+
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~----~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSV----SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            34444445555555555555555555    2333555555554422   2334555555555544433  2345555555


Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        314 FHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       314 ~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      |..+|++++|+.+|+++++++|+
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcC
Confidence            55555555555555555555554

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.7e-14  Score=97.55  Aligned_cols=68  Identities=21%  Similarity=0.299  Sum_probs=59.2

Q ss_pred             ccchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhccCCCCC
Q psy16214        355 VKDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRYDRGEDI  429 (470)
Q Consensus       355 ~~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~yd~~~~~  429 (470)
                      .+++|++|++..+++.++|+++||+++++||||++++.    .+.++++|+.|.+||++|+   ++..||++.+.
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~----~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~~   82 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPEN----HDIANEVFKHLQNEINRLE---KQAFLDQNADR   82 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSC----HHHHHHHHHHHHHHHHHHH---HHTTCSSSSSC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccch----hhHHHHHHHHHHHHHHHHH---HHHHhhccchH
Confidence            46899999999999999999999999999999998762    4568899999999999995   56777777653

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.43  E-value=1.3e-14  Score=102.66  Aligned_cols=66  Identities=26%  Similarity=0.506  Sum_probs=59.5

Q ss_pred             cchhhhccCCCCCCHHHHHHHHHHHHHHcCCCCCCCccHHhhHHHHHHHHHHHHHHhhcCChhhhhhc
Q psy16214        356 KDYYKILGVTKNASSDDIKKAYRKRALVHHPDRHTNATQAQKLEQEKLFKEVGEAYGILSDPTKRSRY  423 (470)
Q Consensus       356 ~~~y~~lg~~~~~~~~ei~~ay~~~~~~~~pd~~~~~~~~~~~~~~~~~~~i~~ay~~l~d~~~~~~y  423 (470)
                      ...|+.||+...++.++|+++|+++++.+|||++.+.  ..+..+++.|+.|++||++|+||++|..|
T Consensus        33 ~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~--~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQ--PYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             CCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTS--TTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             ccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCCh--HHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            3569999999999999999999999999999998763  34566899999999999999999999987

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.42  E-value=4.3e-13  Score=104.85  Aligned_cols=114  Identities=9%  Similarity=0.030  Sum_probs=69.3

Q ss_pred             HHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214         47 CYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGAS  126 (470)
Q Consensus        47 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~  126 (470)
                      .+.+++.|++|+..|+++++++|+++.+++.+|.++..++++..+.+..                               
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~-------------------------------   54 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------------   54 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------------
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHH-------------------------------
Confidence            3556777888888888888888888888888888887665543322211                               


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHhhcCCCChHHHHHHHHH
Q psy16214        127 KAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLN-----------RLQEAQEIANSILATDKQNPDAVFVRGLC  195 (470)
Q Consensus       127 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~l~~~p~~~~~~~~la~~  195 (470)
                           +.+++|+..++++++++|+++.++.++|.+|...|           .+++|+.+|++++.++|++..++..++.+
T Consensus        55 -----~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          55 -----QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             -----HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence                 11233444444444444444444444554444433           34566666666666666666666666555


Q ss_pred             H
Q psy16214        196 L  196 (470)
Q Consensus       196 ~  196 (470)
                      .
T Consensus       130 ~  130 (145)
T d1zu2a1         130 A  130 (145)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.4e-12  Score=93.56  Aligned_cols=83  Identities=17%  Similarity=0.095  Sum_probs=73.2

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCc-------hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHH
Q psy16214          3 SAEKHKEDGNTQYKLKQYSKALKCYSEAISVCPN-------VAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGL   75 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   75 (470)
                      +++.++.+|..++..|+|.+|+..|++|++..|.       .+.++.++|.++..+|++++|+..++++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            6788999999999999999999999999987543       367899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc
Q psy16214         76 IRQIKCNIAL   85 (470)
Q Consensus        76 ~~la~~~~~~   85 (470)
                      .+++.+...+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9987765543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.34  E-value=6.1e-12  Score=99.84  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=88.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc--------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q psy16214        236 KEEGNEKFVAGKNQEAFDIYTEALKIDARNINI--------NSKLLHNRATVLFKMGKYNEAIADCTLALEKDPN-----  302 (470)
Q Consensus       236 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----  302 (470)
                      ...|..++..|+|++|+..|++++.+.|+.+..        .+.+|.++|.+|..+|++++|+..+++++.+.|.     
T Consensus        13 l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~   92 (156)
T d2hr2a1          13 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN   92 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccc
Confidence            345889999999999999999999998876542        3578999999999999999999999999987442     


Q ss_pred             ------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        303 ------YLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       303 ------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                            ...+++++|.+|..+|++++|+..|++++++.|+
T Consensus        93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                  2457899999999999999999999999999764

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.30  E-value=2.4e-12  Score=102.21  Aligned_cols=101  Identities=18%  Similarity=0.159  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch------------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---
Q psy16214          6 KHKEDGNTQYKLKQYSKALKCYSEAISVCPNV------------AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPR---   70 (470)
Q Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---   70 (470)
                      .++..|..++..|+|++|+..|+++|+++|+.            +.+|.++|.+|..+|++++|+..+++++.+.|.   
T Consensus        11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~   90 (156)
T d2hr2a1          11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   90 (156)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence            34455899999999999999999999987763            467899999999999999999999999987442   


Q ss_pred             --------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCh
Q psy16214         71 --------FSKGLIRQIKCNIALGDAPTARSNLKALQELDPDNP  106 (470)
Q Consensus        71 --------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  106 (470)
                              ...+++++|.+|..+|++++|+..|++++++.|...
T Consensus        91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                    245789999999999999999999999999876543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=8.6e-11  Score=84.01  Aligned_cols=81  Identities=15%  Similarity=0.075  Sum_probs=68.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcccCcc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy16214        237 EEGNEKFVAGKNQEAFDIYTEALKIDARNIN---INSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRRCKC  313 (470)
Q Consensus       237 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  313 (470)
                      +.|.++++.|+|.+|+..|++|+++.|.++.   ..+.++.++|.++.++|++++|+.+++++++++|+++.++.+++.+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~   89 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF   89 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            4499999999999999999999988765432   2467889999999999999999999999999999999999988776


Q ss_pred             HHHh
Q psy16214        314 FHAL  317 (470)
Q Consensus       314 ~~~~  317 (470)
                      ...+
T Consensus        90 ~~~l   93 (95)
T d1tjca_          90 EYIM   93 (95)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=1.7e-09  Score=87.00  Aligned_cols=100  Identities=13%  Similarity=0.068  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccc------------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy16214        233 KAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNINI------------------NSKLLHNRATVLFKMGKYNEAIADCT  294 (470)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~  294 (470)
                      ......|......|++++|+..|.+++.+.+.+...                  ...++..++.++..+|++++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            344556999999999999999999999987654211                  23678899999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        295 LALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       295 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      +++.++|.+..+|..++.++..+|++.+|+..|+++..
T Consensus        92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999843

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.07  E-value=1.9e-10  Score=98.80  Aligned_cols=87  Identities=16%  Similarity=0.090  Sum_probs=76.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHH
Q psy16214         11 GNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPT   90 (470)
Q Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~   90 (470)
                      +..++..|++++|+..|+++++.+|+++.++..++.++...|++++|+..++++++++|++..++..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            56678899999999999999999999999999999999999999999999999999999999999999988887777666


Q ss_pred             HHHHHHH
Q psy16214         91 ARSNLKA   97 (470)
Q Consensus        91 A~~~~~~   97 (470)
                      +...+.+
T Consensus        83 a~~~~~~   89 (264)
T d1zbpa1          83 FAQGAAT   89 (264)
T ss_dssp             HTTSCCC
T ss_pred             HHHHhhh
Confidence            5554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=1.6e-09  Score=87.15  Aligned_cols=96  Identities=10%  Similarity=0.026  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCch----------------------hHHHHHHHHHHHHcCChHHHHHHH
Q psy16214          4 AEKHKEDGNTQYKLKQYSKALKCYSEAISVCPNV----------------------AAYYGNRAACYMMLGMYTYALDDA   61 (470)
Q Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~~a~~~~~~g~~~~A~~~~   61 (470)
                      .+.+...|..+...|++++|+..|.+++.+.+..                      ..++..++.++...|++++|+..+
T Consensus        11 f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~   90 (179)
T d2ff4a2          11 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL   90 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4678999999999999999999999999987643                      357889999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy16214         62 KLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQ   99 (470)
Q Consensus        62 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l   99 (470)
                      ++++.++|.+..+|..++.++..+|++.+|+..|+++.
T Consensus        91 ~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          91 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999983

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.01  E-value=4.1e-10  Score=96.67  Aligned_cols=123  Identities=10%  Similarity=0.044  Sum_probs=56.6

Q ss_pred             ccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHH
Q psy16214        198 YDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRA  277 (470)
Q Consensus       198 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la  277 (470)
                      ..|++++|+..++++++.+|++...+..+            +.++...|++++|+..|+++++++|+    ...++..++
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~L------------a~lL~~~G~~e~A~~~l~~a~~l~P~----~~~~~~~l~   71 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSF------------IELLCIDGDFERADEQLMQSIKLFPE----YLPGASQLR   71 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHH------------HHHHHHHTCHHHHHHHHHHHHHHCGG----GHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHHhCCC----cHHHHHHHH
Confidence            34444444444444444444444444444            44444444444444444444444444    223344444


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy16214        278 TVLFKMGKYNEAIADCTLALE-KDPNYLKALSRRCKCFHALGQYKECVIDAEKIYKMDNS  336 (470)
Q Consensus       278 ~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~p~  336 (470)
                      .++...+...++......... ..|.....+...+.++...|++++|...++++.++.|.
T Consensus        72 ~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            444444444443333322221 13333444444555555555555555555555555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=1.5e-06  Score=62.89  Aligned_cols=81  Identities=12%  Similarity=-0.043  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCChHHHHHHH
Q psy16214         38 AAYYGNRAACYMMLGM---YTYALDDAKLAVSLDPRF-SKGLIRQIKCNIALGDAPTARSNLKALQELDPDNPAIAQESK  113 (470)
Q Consensus        38 ~~~~~~~a~~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  113 (470)
                      +.+.++.|.++.+..+   .++++..++.++..+|.+ ..+++.+|.+|..+|++++|..+++++++++|++..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            6788999999987654   568999999999988876 479999999999999999999999999999999999887776


Q ss_pred             HHHHH
Q psy16214        114 ALETM  118 (470)
Q Consensus       114 ~~~~~  118 (470)
                      .+...
T Consensus       115 ~Ie~~  119 (124)
T d2pqrb1         115 MVEDK  119 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=2.8e-06  Score=61.47  Aligned_cols=80  Identities=8%  Similarity=-0.080  Sum_probs=69.6

Q ss_pred             cHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhcCCch-hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16214          3 SAEKHKEDGNTQYKLK---QYSKALKCYSEAISVCPNV-AAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ   78 (470)
Q Consensus         3 ~a~~~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   78 (470)
                      +++.-|+.|.++.+..   +..+||.+++.+++.+|.+ .++++++|.+|+.+|+|++|+.+++++++++|++..+....
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            4667899999998764   5579999999999999876 48999999999999999999999999999999999887665


Q ss_pred             HHHH
Q psy16214         79 IKCN   82 (470)
Q Consensus        79 a~~~   82 (470)
                      -.+-
T Consensus       114 ~~Ie  117 (124)
T d2pqrb1         114 SMVE  117 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.16  E-value=3.9e-05  Score=57.56  Aligned_cols=111  Identities=12%  Similarity=-0.017  Sum_probs=88.6

Q ss_pred             ChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHH
Q psy16214        201 KMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVL  280 (470)
Q Consensus       201 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~  280 (470)
                      |+++|+.+|+++.+..  ++.+...+            +  .....+.++|+.+++++.+..      ++.+.+.+|.+|
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l------------~--~~~~~~~~~a~~~~~~aa~~g------~~~a~~~Lg~~y   65 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSL------------V--SNSQINKQKLFQYLSKACELN------SGNGCRFLGDFY   65 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHH------------H--TCTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhh------------c--cccccCHHHHHHHHhhhhccc------chhhhhhHHHhh
Confidence            6788999999988764  33333333            3  234578999999999988653      356789999998


Q ss_pred             HH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCC
Q psy16214        281 FK----MGKYNEAIADCTLALEKDPNYLKALSRRCKCFHA----LGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       281 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~p  335 (470)
                      ..    ..++++|+.+|+++.+.  .++.+.+.+|.+|..    ..+.++|+.+|+++.+...
T Consensus        66 ~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          66 ENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            86    56799999999999875  678999999999987    5689999999999998765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.06  E-value=8.1e-05  Score=55.74  Aligned_cols=110  Identities=8%  Similarity=-0.043  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh--
Q psy16214        167 RLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV--  244 (470)
Q Consensus       167 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--  244 (470)
                      ++++|+.+|+++.+..  ++.+.+.++.  ....+.++|+..++++.+.  .++.+...+            |.+|..  
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~L------------g~~y~~g~   69 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFL------------GDFYENGK   69 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHH------------HHHHHHCS
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhH------------HHhhhhcc
Confidence            4556666666665542  3444444443  3345667777777776654  345555555            666654  


Q ss_pred             --cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q psy16214        245 --AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK----MGKYNEAIADCTLALEKD  300 (470)
Q Consensus       245 --~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  300 (470)
                        ..++++|+.+|+++.+..      .+.+.+.+|.+|..    ..++.+|+.+|+++.+..
T Consensus        70 ~~~~d~~~A~~~~~~aa~~g------~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          70 YVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             SSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHHHHHhhhhccC------cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence              456777777777776553      23456777777766    457778888888777654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.018  Score=52.44  Aligned_cols=306  Identities=8%  Similarity=-0.093  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHH---HHH
Q psy16214          5 EKHKEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQ---IKC   81 (470)
Q Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~   81 (470)
                      ...|..+...+..|++.++..+.... +-+|--+  |...-......++..  ...+...++.+|+.+......   ...
T Consensus         7 r~~y~~a~~a~~~~~~~~~~~~~~~L-~dypL~p--Yl~~~~l~~~~~~~~--~~~i~~Fl~~~p~~P~~~~lr~~~l~~   81 (450)
T d1qsaa1           7 RSRYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYP--YLEYRQITDDLMNQP--AVTVTNFVRANPTLPPARTLQSRFVNE   81 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHH--HHHHHHHHHTGGGCC--HHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHhhh-cCCCCHH--HHHHHHHHhccccCC--HHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence            45778889999999999888777665 4445222  222222222222111  112344555566665443222   233


Q ss_pred             HHHcCChHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh----c--CCHHHHHHHHHHHHHhCCCCHHHH
Q psy16214         82 NIALGDAPTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFE----A--NDYRTAMFYLDRAMDQGVASKTYK  155 (470)
Q Consensus        82 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~----~--~~~~~A~~~~~~~l~~~p~~~~~~  155 (470)
                      +...+++...+..+    ...|.+......+.......+....+...+.    .  -..+.+-.++........-....+
T Consensus        82 L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~  157 (450)
T d1qsaa1          82 LARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAY  157 (450)
T ss_dssp             HHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHH
Confidence            44445554433222    2344444444344443333322222222111    1  122222333333333333344444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH------------------------hhcCCCChH--HHHHHHHHHhccCChHHHHHHH
Q psy16214        156 LMKAECLAHLNRLQEAQEIANSI------------------------LATDKQNPD--AVFVRGLCLYYDDKMDLAVNHF  209 (470)
Q Consensus       156 ~~~a~~~~~~~~~~~A~~~~~~~------------------------l~~~p~~~~--~~~~la~~~~~~g~~~~A~~~~  209 (470)
                      ..++......|++..|...+..+                        ....+.+..  .....+.......+.+.|...+
T Consensus       158 ~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l  237 (450)
T d1qsaa1         158 LERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMI  237 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHH
Confidence            45555566666666555544321                        111122211  1222333334445677777777


Q ss_pred             HHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHH
Q psy16214        210 QLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEA  289 (470)
Q Consensus       210 ~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A  289 (470)
                      .......+.....+....        ...+..+...+..+.|............+    .......++. ....+++..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~w~~~~-al~~~~~~~~  304 (450)
T d1qsaa1         238 PSLAQAQQLNEDQIQELR--------DIVAWRLMGNDVTDEQAKWRDDAIMRSQS----TSLIERRVRM-ALGTGDRRGL  304 (450)
T ss_dssp             HHHHHHTTCCHHHHHHHH--------HHHHHTSCSTTCCHHHHHHHHHHHHTCCC----HHHHHHHHHH-HHHHTCHHHH
T ss_pred             HhhhhcccccHHHHHHHH--------HHHHHHHHHcCchHHHHHHHHhhcccccc----hHHHHHHHHH-HHHcCChHHH
Confidence            666554444333222210        00133344556677788777766544433    2222333343 4567899998


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy16214        290 IADCTLALEKDPNYLKALSRRCKCFHALGQYKECVIDAEKIYK  332 (470)
Q Consensus       290 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  332 (470)
                      ...+...-......+...+.+|+.+..+|+.++|...|..+..
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            8888764333334478889999999999999999999999875

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.077  Score=48.05  Aligned_cols=286  Identities=10%  Similarity=-0.002  Sum_probs=178.1

Q ss_pred             HHHHhhcCCchhHHHHHH---HHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Q psy16214         27 YSEAISVCPNVAAYYGNR---AACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDAPTARSNLKALQELDP  103 (470)
Q Consensus        27 ~~~al~~~p~~~~~~~~~---a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p  103 (470)
                      +...++.+|+.|..-..+   -..+...+++...+..+    ...|.+......++.+....|+..+|...+..+....+
T Consensus        58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~  133 (450)
T d1qsaa1          58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK  133 (450)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence            456667788876654333   33455666766544433    34677888888899999999999999999888877665


Q ss_pred             CChHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHH------------------------HHhCCCCHH
Q psy16214        104 DNPAIAQESKALET------MAKNFEGASKAFEANDYRTAMFYLDRA------------------------MDQGVASKT  153 (470)
Q Consensus       104 ~~~~~~~~l~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~------------------------l~~~p~~~~  153 (470)
                      ..+.....+-....      .......+...+..+++..|...+..+                        ....+....
T Consensus       134 ~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~  213 (450)
T d1qsaa1         134 SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDF  213 (450)
T ss_dssp             CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHH
T ss_pred             CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChh
Confidence            55544433333221      112233444455555555554433211                        111222222


Q ss_pred             H--HHHHHHHHHHcCCHHHHHHHHHHHhhcCCCChHHHHH----HHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHH
Q psy16214        154 Y--KLMKAECLAHLNRLQEAQEIANSILATDKQNPDAVFV----RGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYK  227 (470)
Q Consensus       154 ~--~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~  227 (470)
                      .  ....+..-....+.+.|...+.......+.+...+..    ++..+...+..+.+...+........+.......  
T Consensus       214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~--  291 (450)
T d1qsaa1         214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERR--  291 (450)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHH--
T ss_pred             hhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHH--
Confidence            1  1223333344568888999888877766665543333    2333345567788888887777665554433222  


Q ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy16214        228 RAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKDPNY----  303 (470)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----  303 (470)
                                 +...+..+++..+...+...    |..+...+...+.+|.++..+|+.+.|...|..+... ++.    
T Consensus       292 -----------~~~al~~~~~~~~~~~~~~l----~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~~fYG~L  355 (450)
T d1qsaa1         292 -----------VRMALGTGDRRGLNTWLARL----PMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-RGFYPMV  355 (450)
T ss_dssp             -----------HHHHHHHTCHHHHHHHHHHS----CTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-CSHHHHH
T ss_pred             -----------HHHHHHcCChHHHHHHHHhc----CcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-CChHHHH
Confidence                       33355668999888887654    2233335778899999999999999999999987653 211    


Q ss_pred             -------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q psy16214        304 -------------------------LKALSRRCKCFHALGQYKECVIDAEKIYKMD  334 (470)
Q Consensus       304 -------------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  334 (470)
                                               ...-+.++..+..+|+...|...+..++..-
T Consensus       356 Aa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~  411 (450)
T d1qsaa1         356 AAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK  411 (450)
T ss_dssp             HHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC
Confidence                                     1123456778888888888888888777543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.97  E-value=0.091  Score=45.12  Aligned_cols=273  Identities=12%  Similarity=0.030  Sum_probs=149.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy16214          8 KEDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGD   87 (470)
Q Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   87 (470)
                      -..|..+++.|.|+.|..+|+..        .-+-.+..++..++++..|...+.++     +.+..|......+.....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~--------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e   84 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE   84 (336)
T ss_dssp             -----------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhC--------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcH
Confidence            35678888999999999999854        22455668888999999999888776     567888888888887766


Q ss_pred             hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy16214         88 APTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEANDYRTAMFYLDRAMDQGVASKTYKLMKAECLAHLNR  167 (470)
Q Consensus        88 ~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~  167 (470)
                      ...|.-+ ...+.   .+++-...            ....+-..|.+++.+.+++.++...+.+...+..++.+|.+.+ 
T Consensus        85 ~~la~i~-~~~~~---~~~d~l~~------------~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-  147 (336)
T d1b89a_          85 FRLAQMC-GLHIV---VHADELEE------------LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-  147 (336)
T ss_dssp             HHHHHHT-TTTTT---TCHHHHHH------------HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHH-HHHhh---cCHHHHHH------------HHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-
Confidence            6544221 11111   12222111            1122345678888899999888888888888888888776654 


Q ss_pred             HHHHHHHHHHHhh-cCCC-------ChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHH
Q psy16214        168 LQEAQEIANSILA-TDKQ-------NPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEG  239 (470)
Q Consensus       168 ~~~A~~~~~~~l~-~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~  239 (470)
                      .++-.+.+...-. .++.       ....|-.+..+|.+.|+++.|+..+-.   ..++... ...+            -
T Consensus       148 ~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~~~~~~~-~~~f------------~  211 (336)
T d1b89a_         148 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---HPTDAWK-EGQF------------K  211 (336)
T ss_dssp             HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---STTTTCC-HHHH------------H
T ss_pred             hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---cchhhhh-HHHH------------H
Confidence            4444444443211 1111       112344566667777888777765532   1111111 1111            2


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcccCccchHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy16214        240 NEKFVAGKNQEAFDIYTEALKIDARNININSKL---------LHNRATVLFKMGKYNEAIADCTLALEKDPNYLKALSRR  310 (470)
Q Consensus       240 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  310 (470)
                      .++.+..+.+..-+...-.+...|...   ..+         ...+-....+.++..-...+++....  .++..+...+
T Consensus       212 e~~~k~~N~e~~~~~i~~yL~~~p~~i---~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn~al  286 (336)
T d1b89a_         212 DIITKVANVELYYRAIQFYLEFKPLLL---NDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESL  286 (336)
T ss_dssp             HHHHHCSSTHHHHHHHHHHHHHCGGGH---HHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHH
T ss_pred             HHHHccCChHHHHHHHHHHHHcCHHHH---HHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHHHHH
Confidence            334444454444444444444444321   000         11223344455566666666666443  3356788889


Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCC
Q psy16214        311 CKCFHALGQYKECVIDAEKIYKMDN  335 (470)
Q Consensus       311 a~~~~~~g~~~~A~~~~~~a~~~~p  335 (470)
                      +.+|...++++.    +++.++...
T Consensus       287 ~~lyie~~d~~~----l~~~i~~~~  307 (336)
T d1b89a_         287 NNLFITEEDYQA----LRTSIDAYD  307 (336)
T ss_dssp             HHHHHHTTCHHH----HHHHHHHCC
T ss_pred             HHHHhCcchhHH----HHHHHHHhc
Confidence            999999998754    445554443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.54  E-value=0.2  Score=42.96  Aligned_cols=258  Identities=10%  Similarity=-0.043  Sum_probs=149.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q psy16214          9 EDGNTQYKLKQYSKALKCYSEAISVCPNVAAYYGNRAACYMMLGMYTYALDDAKLAVSLDPRFSKGLIRQIKCNIALGDA   88 (470)
Q Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   88 (470)
                      ....++...++|+.|.+...++     +++..|.....++.......-|.-. ...   ...++.-.......|...|.+
T Consensus        45 rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~  115 (336)
T d1b89a_          45 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYF  115 (336)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCCh
Confidence            3455667777888887777665     4677888888888887776554221 111   123455556778888999999


Q ss_pred             HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy16214         89 PTARSNLKALQELDPDNPAIAQESKALETMAKNFEGASKAFEA----NDYRTAMFYLDRAMDQGVASKTYKLMKAECLAH  164 (470)
Q Consensus        89 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~  164 (470)
                      ++.+..++.++...+.+...+..++.++...+.. +-..++..    =+..+++..+++        ...|..+..+|.+
T Consensus       116 e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~-kl~e~l~~~s~~y~~~k~~~~c~~--------~~l~~elv~Ly~~  186 (336)
T d1b89a_         116 EELITMLEAALGLERAHMGMFTELAILYSKFKPQ-KMREHLELFWSRVNIPKVLRAAEQ--------AHLWAELVFLYDK  186 (336)
T ss_dssp             HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHT--------TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccchHHHHHHHHHHHHhChH-HHHHHHHhccccCCHHHHHHHHHH--------cCChHHHHHHHHh
Confidence            9999999999998888888877777765432211 11111111    133444433322        1224456777888


Q ss_pred             cCCHHHHHHHHHHHhhcCCCChHHHHHHHHHHhccCChHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16214        165 LNRLQEAQEIANSILATDKQNPDAVFVRGLCLYYDDKMDLAVNHFQLLLKLAPDHAKAKETYKRAKLLKAKKEEGNEKFV  244 (470)
Q Consensus       165 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (470)
                      .|++++|+..+-.    .|.++.-....-.++.+..+.+..-+...-.+...|+....  .+..+..............+
T Consensus       187 ~~~~~~A~~~~i~----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p~~i~~--lL~~v~~~~d~~r~V~~~~k  260 (336)
T d1b89a_         187 YEEYDNAIITMMN----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLND--LLMVLSPRLDHTRAVNYFSK  260 (336)
T ss_dssp             TTCHHHHHHHHHH----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHH--HHHHHGGGCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHH----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCHHHHHH--HHHHhccCCCHHHHHHHHHh
Confidence            8999988877654    22222222233344555566665555555555556643221  11111100001111334445


Q ss_pred             cCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy16214        245 AGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFKMGKYNEAIADCTLALEKD  300 (470)
Q Consensus       245 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (470)
                      .++..-...+++.....+      ...+...++.+|...++++.    +++.++..
T Consensus       261 ~~~l~li~p~Le~v~~~n------~~~vn~al~~lyie~~d~~~----l~~~i~~~  306 (336)
T d1b89a_         261 VKQLPLVKPYLRSVQNHN------NKSVNESLNNLFITEEDYQA----LRTSIDAY  306 (336)
T ss_dssp             TTCTTTTHHHHHHHHTTC------CHHHHHHHHHHHHHTTCHHH----HHHHHHHC
T ss_pred             cCCcHHHHHHHHHHHHcC------hHHHHHHHHHHHhCcchhHH----HHHHHHHh
Confidence            566666666666544322      23578889999999999754    44445443

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=84.31  E-value=8.1  Score=30.42  Aligned_cols=176  Identities=7%  Similarity=0.027  Sum_probs=87.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCC-ChHHHHHHHHHHh-ccCChHHHHHHHHHHHhhCCC--hHHHH
Q psy16214        150 ASKTYKLMKAECLAHLNRLQEAQEIANSILAT--DKQ-NPDAVFVRGLCLY-YDDKMDLAVNHFQLLLKLAPD--HAKAK  223 (470)
Q Consensus       150 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~p~--~~~~~  223 (470)
                      ...+-+..+|.+..+.++|++.+.+.++++..  +|. +.+-...+..+|- ..|....+...+.........  +....
T Consensus         2 ~~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~~~   81 (236)
T d1o9da_           2 TAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEHV   81 (236)
T ss_dssp             CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCChHHH
Confidence            33445667889999999999999999999876  444 4555555555552 234445555555444332111  11111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHH-----cCC-----HHHHHHHH
Q psy16214        224 ETYKRAKLLKAKKEEGNEKFVAGKNQEAFDIYTEALKIDARNININSKLLHNRATVLFK-----MGK-----YNEAIADC  293 (470)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~la~~~~~-----~g~-----~~~A~~~~  293 (470)
                      ..+      ..+..+...-+ ..--.+.+...+..+--...++....-.+-..|..|.-     .|+     .+.|...|
T Consensus        82 ~~i------~~yk~kie~EL-~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~aY  154 (236)
T d1o9da_          82 NSI------REYRSKIENEL-SKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAY  154 (236)
T ss_dssp             HHH------HHHHHHHHHHH-HHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred             HHH------HHHHHHHHHHH-HHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            110      00000000000 00012233333332221222221111122223333322     222     45677778


Q ss_pred             HHHHH-----hCCCCHH---HHHHHHHHHH-HhCCHHHHHHHHHHHHh
Q psy16214        294 TLALE-----KDPNYLK---ALSRRCKCFH-ALGQYKECVIDAEKIYK  332 (470)
Q Consensus       294 ~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~a~~  332 (470)
                      +.|+.     +.|.+|-   ..++.+..+. .+++.++|+...++++.
T Consensus       155 ~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd  202 (236)
T d1o9da_         155 KAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD  202 (236)
T ss_dssp             HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            87764     4666653   3344444444 57999999999998875

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.02  E-value=4  Score=25.68  Aligned_cols=29  Identities=34%  Similarity=0.340  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy16214        269 NSKLLHNRATVLFKMGKYNEAIADCTLAL  297 (470)
Q Consensus       269 ~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (470)
                      .+..+...|.-+...|+|++|+++.+++.
T Consensus         7 ~AH~~~RrAer~l~~~rydeAIech~kA~   35 (83)
T d2crba1           7 LAHQQSRRADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34566677888888888888888776543