Psyllid ID: psy16238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLSTKKSGPCTAENNNKTSAHNNNLKLRESLTPNSSPTNNICNEKRNLHRKQN
Secondary Structure (PSIPRED)
cccccEEEEEcccHHHHHHHHHHHHcccccccEEEEcccccccccccEEEEccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccHHHHHHHHHHHHHccccEEEEEccccccccHHEEEEEEccccHHHHHHHccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHHccc
Coil and Loop (DISEMBL)
mssphyslrwnnHQSHLLNAFDSLlqnetlvdvtlarprrrsgeacgaqdlskcpagspdafidgpeipenlstkksgpctaennnktsahnnnlklresltpnssptnnicnekrnlhrkqn
Flexible Loop (DISEMBL)
MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSgeacgaqdlskcpAGSPDAFIDGPEIPENLSTKKSGPCTaennnktsahnnnlklresltpnssptnnicnekrnlhrkqn
Low Complexity Region (SEG)
MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLSTKKSGPCTAENNNKTSAHNNNLKLRESLTPNSSPTNNICNEKRNLHRKQN
Disordered region (IsUnstruct)
*******LRWNNHQSHLLNAFDSLLQNETLVDVTL****************************************************************************************
Disordered Region (DISOPRED)
**SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLSTKKSGPCTA*****************************************
Disordered Region (DISEMBL)
********RWNNHQSHLLNAFDSLLQNETLVDVTLARP****************PAGSPDAFIDGPEIPENLSTKKSGPCTAENNNKTSAHNNNLKLRESLTPNSSPTNNICNEKRNLHRKQN
Disordered Region (DISPRO)
****HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLSTKKSGPCT****************RESLTPNSSPTNNICNEKRNL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLSTKKSGPCTAENNNKTSAHNNNLKLRESLTPNSSPTNNICNEKRNLHRKQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
P14083	1046	Protein TKR OS=Drosophila	yes	N/A	0.260	0.030	0.75	4e-09
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.260	0.033	0.687	3e-07
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.260	0.040	0.687	3e-07
P42283	891	Longitudinals lacking pro	no	N/A	0.260	0.035	0.687	4e-07
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.252	0.031	0.709	5e-07
Q9V5M3	878	Longitudinals lacking pro	no	N/A	0.260	0.036	0.687	5e-07
P42282	813	Protein tramtrack, alpha	no	N/A	0.292	0.044	0.638	5e-07
P17789	643	Protein tramtrack, beta i	no	N/A	0.292	0.055	0.638	5e-07
P42284	549	Longitudinals lacking pro	no	N/A	0.260	0.058	0.687	2e-06
Q9W0K4	1067	Protein bric-a-brac 2 OS=	no	N/A	0.260	0.029	0.625	5e-06

>sp|P14083|TKR_DROME Protein TKR OS=Drosophila melanogaster GN=Tkr PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 5   HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           HYSLRWNNHQ+H+L AFD+LL+ +TLVDVTL 
Sbjct: 114 HYSLRWNNHQNHILRAFDALLKTKTLVDVTLV 145

Has a regulatory role during midline cell development.
Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 5  HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           + LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6  QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 5  HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           + LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6  QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 5  HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           + LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6  QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 27/31 (87%)

Query: 6  YSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
          + LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 7  FCLRWNNHQSTLISVFDTLLENETLVDCTLA 37

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M3|LOLA6_DROME Longitudinals lacking protein, isoforms N/O/W/X/Y OS=Drosophila melanogaster GN=lola PE=1 SV=3

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 5  HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           + LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6  QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
          M+S  + LRWNNHQS+LL+ FD LL  ET  DVTLA
Sbjct: 3  MASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLA 38

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
          M+S  + LRWNNHQS+LL+ FD LL  ET  DVTLA
Sbjct: 3  MASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLA 38

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform beta is required to repress inappropriate segmentation gene transcription and repress genes incompatible with development of photoreceptor cell fates. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. Inhibits Trl-dependent activation of eve. May bind to the region AGGGC/TGG. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk. A second method of degradation exists that is phyl-independent, this is mediated by recognition of motifs in the C-terminus of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|P42284|LOLA2_DROME Longitudinals lacking protein, isoforms H/M/V OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 5  HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           + LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct: 6  QFCLRWNNHQSTLISVFDTLLENETLVDCTLA 37

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 5   HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
            + LRWNN+QS+L N FD LLQ+E+ VDVTL+
Sbjct: 197 QFCLRWNNYQSNLTNVFDELLQSESFVDVTLS 228

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
242006896	750	tkr, putative [Pediculus humanus corpori	0.292	0.048	0.805	1e-09
270012342	567	hypothetical protein TcasGA2_TC006481 [T	0.292	0.063	0.75	7e-09
242012006	262	B-cell CLL/lymphoma 6 member B protein,	0.528	0.248	0.530	9e-09
91088849	643	PREDICTED: similar to Tyrosine kinase-re	0.235	0.045	0.75	9e-09
194886981	1044	GG19859 [Drosophila erecta] gi|190659910	0.276	0.032	0.764	5e-08
195489912	1044	GE11385 [Drosophila yakuba] gi|194179040	0.276	0.032	0.764	6e-08
195430050	1149	GK21725 [Drosophila willistoni] gi|19415	0.260	0.027	0.781	6e-08
198458752	1092	GA14141 [Drosophila pseudoobscura pseudo	0.260	0.029	0.781	6e-08
194756350	1099	GF11509 [Drosophila ananassae] gi|190621	0.260	0.029	0.781	6e-08
195380423	1155	GJ21336 [Drosophila virilis] gi|19414376	0.260	0.027	0.781	6e-08

>gi|242006896|ref|XP_002424278.1| tkr, putative [Pediculus humanus corporis] gi|212507678|gb|EEB11540.1| tkr, putative [Pediculus humanus corporis]

 Score = 67.0 bits (162), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 34/36 (94%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
          MSS HYSLRWNNHQ+++LNAFD+LLQ+ETLVDVTL 
Sbjct: 1  MSSQHYSLRWNNHQNYILNAFDTLLQSETLVDVTLV 36

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012342|gb|EFA08790.1| hypothetical protein TcasGA2_TC006481 [Tribolium castaneum]

 Score = 64.7 bits (156), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
          M+  HYSLRWNNHQ+H+L AFD+LLQ ETLVDVTL 
Sbjct: 1  MTQSHYSLRWNNHQTHILAAFDALLQAETLVDVTLV 36

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012006|ref|XP_002426734.1| B-cell CLL/lymphoma 6 member B protein, putative [Pediculus humanus corporis] gi|212510905|gb|EEB13996.1| B-cell CLL/lymphoma 6 member B protein, putative [Pediculus humanus corporis]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 1  MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPD 60
          M S HY LRWNNHQS+LL  F  LLQ+E+LVDVTLA     S  A     LS C +    
Sbjct: 1  MGSEHYCLRWNNHQSNLLGVFSQLLQDESLVDVTLACAEGHSIRA-HKVVLSACSSYFQT 59

Query: 61 AFIDGP 66
           FID P
Sbjct: 60 LFIDHP 65

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088849|ref|XP_971045.1| PREDICTED: similar to Tyrosine kinase-related protein CG16778-PB [Tribolium castaneum]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%)

Query: 1   MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           M+  HYSLRWNNHQ+H+L AFD+LLQ ETLVDVTL 
Sbjct: 77  MTQSHYSLRWNNHQTHILAAFDALLQAETLVDVTLV 112

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194886981|ref|XP_001976723.1| GG19859 [Drosophila erecta] gi|190659910|gb|EDV57123.1| GG19859 [Drosophila erecta]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 3   SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           S HYSLRWNNHQ+H+L AFD+LLQ +TLVDVTL 
Sbjct: 110 SDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLV 143

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195489912|ref|XP_002092939.1| GE11385 [Drosophila yakuba] gi|194179040|gb|EDW92651.1| GE11385 [Drosophila yakuba]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query: 3   SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           S HYSLRWNNHQ+H+L AFD+LLQ +TLVDVTL 
Sbjct: 110 SDHYSLRWNNHQNHILRAFDALLQTKTLVDVTLV 143

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195430050|ref|XP_002063070.1| GK21725 [Drosophila willistoni] gi|194159155|gb|EDW74056.1| GK21725 [Drosophila willistoni]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 5   HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           HYSLRWNNHQ+H+L AFD+LLQ +TLVDVTL 
Sbjct: 130 HYSLRWNNHQNHILRAFDALLQTKTLVDVTLV 161

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198458752|ref|XP_001361151.2| GA14141 [Drosophila pseudoobscura pseudoobscura] gi|198136451|gb|EAL25728.2| GA14141 [Drosophila pseudoobscura pseudoobscura]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 5   HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           HYSLRWNNHQ+H+L AFD+LLQ +TLVDVTL 
Sbjct: 105 HYSLRWNNHQNHILRAFDALLQTKTLVDVTLV 136

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194756350|ref|XP_001960442.1| GF11509 [Drosophila ananassae] gi|190621740|gb|EDV37264.1| GF11509 [Drosophila ananassae]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 5   HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           HYSLRWNNHQ+H+L AFD+LLQ +TLVDVTL 
Sbjct: 117 HYSLRWNNHQNHILRAFDALLQTKTLVDVTLV 148

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195380423|ref|XP_002048970.1| GJ21336 [Drosophila virilis] gi|194143767|gb|EDW60163.1| GJ21336 [Drosophila virilis]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/32 (78%), Positives = 29/32 (90%)

Query: 5   HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
           HYSLRWNNHQ+H+L AFD+LLQ +TLVDVTL 
Sbjct: 160 HYSLRWNNHQNHILRAFDALLQTKTLVDVTLV 191

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
FB|FBgn0003715	1046	CG16778 [Drosophila melanogast	0.276	0.032	0.722	3e-13
FB|FBgn0264981	1089	mamo "maternal gene required f	0.536	0.060	0.462	4.7e-09
FB|FBgn0000210	880	br "broad" [Drosophila melanog	0.260	0.036	0.562	6.3e-09
FB|FBgn0263108	798	BtbVII "BTB-protein-VII" [Dros	0.333	0.051	0.536	1.4e-08
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.284	0.035	0.628	1.3e-07
FB|FBgn0264442	904	ab "abrupt" [Drosophila melano	0.292	0.039	0.5	1.9e-07
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.512	0.077	0.449	1.7e-06
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.252	0.031	0.709	2.7e-06
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.252	0.032	0.580	2.9e-06
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.463	0.053	0.444	2.7e-05

FB|FBgn0003715 CG16778 [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 26/36 (72%), Positives = 32/36 (88%)

Query:     2 SSP--HYSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
             S+P  HYSLRWNNHQ+H+L AFD+LL+ +TLVDVTL
Sbjct:   109 SAPQDHYSLRWNNHQNHILRAFDALLKTKTLVDVTL 144

GO:0003677 "DNA binding" evidence=ISS;NAS

GO:0042332 "gravitaxis" evidence=IMP

GO:0007418 "ventral midline development" evidence=IMP

FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
 Identities = 31/67 (46%), Positives = 38/67 (56%)

Query:     1 MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPD 60
             M S HY LRWNN+QS+LL  F  LLQ+ +LVDVTL      S  A     LS C +    
Sbjct:     1 MGSEHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVV-LSACSSYFQS 59

Query:    61 AFIDGPE 67
              F++ PE
Sbjct:    60 LFLEHPE 66

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0035041 "sperm chromatin decondensation" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0007276 "gamete generation" evidence=IMP

FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)]

 Score = 102 (41.0 bits), Expect = 6.3e-09, Sum P(3) = 6.3e-09
 Identities = 18/32 (56%), Positives = 25/32 (78%)

Query:     5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
             H+ LRWNN+QS + +AF++L  +E  VDVTLA
Sbjct:     6 HFCLRWNNYQSSITSAFENLRDDEAFVDVTLA 37

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0007458 "progression of morphogenetic furrow involved in compound eye morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007552 "metamorphosis" evidence=NAS;TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=NAS

GO:0035070 "salivary gland histolysis" evidence=NAS;IMP

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS

GO:0006914 "autophagy" evidence=IMP

GO:0008219 "cell death" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=IMP;TAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035075 "response to ecdysone" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0007562 "eclosion" evidence=IEP

GO:0071390 "cellular response to ecdysone" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IGI

GO:0048477 "oogenesis" evidence=IMP

GO:0048808 "male genitalia morphogenesis" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)]

 Score = 108 (43.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
 Identities = 22/41 (53%), Positives = 27/41 (65%)

Query:     1 MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRR 41
             MS   + LRWNNHQ + ++   SLL N TLVDVTLA   R+
Sbjct:     1 MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQ 41

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 114 (45.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query:     2 SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
             SS  + LRWNN+Q++L   FD LLQNE  VDVTLA
Sbjct:    98 SSQQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLA 132

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0264442 ab "abrupt" [Drosophila melanogaster (taxid:7227)]

 Score = 92 (37.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query:     5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRR 40
             HY+L+WN+ QS +L++F  L   E  VDVTLA   R
Sbjct:    77 HYALKWNDFQSSILSSFRHLRDEEDFVDVTLACDER 112

GO:0016203 "muscle attachment" evidence=IMP

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0007423 "sensory organ development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0016198 "axon choice point recognition" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 122 (48.0 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 31/69 (44%), Positives = 37/69 (53%)

Query:     1 MSSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQD--LSKCPAGS 58
             M+S  + LRWNNHQS+LL+ FD LL  ET  DVTLA      G+   A    LS C    
Sbjct:     3 MASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAV----EGQHLKAHKMVLSACSPYF 58

Query:    59 PDAFIDGPE 67
                F+  PE
Sbjct:    59 NTLFVSHPE 67

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 121 (47.7 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)

Query:     6 YSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
             + LRWNNHQS L++ FD+LL+NETLVD TLA
Sbjct:     7 FCLRWNNHQSTLISVFDTLLENETLVDCTLA 37

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 93 (37.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
 Identities = 18/31 (58%), Positives = 21/31 (67%)

Query:     6 YSLRWNNHQSHLLNAFDSLLQNETLVDVTLA 36
             + LRWNNH ++L     SLLQ E L DVTLA
Sbjct:   106 FCLRWNNHPTNLTGVLTSLLQREALCDVTLA 136

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 112 (44.5 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 28/63 (44%), Positives = 35/63 (55%)

Query:     6 YSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQD--LSKCPAGSPDAFI 63
             + LRWNN+QS+L N FD LLQ+E+ VDVTL+      G +  A    LS C       F 
Sbjct:   198 FCLRWNNYQSNLTNVFDELLQSESFVDVTLSC----EGHSIKAHKMVLSACSPYFQALFY 253

Query:    64 DGP 66
             D P
Sbjct:   254 DNP 256


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.125   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      123       123   0.00091  102 3  11 23  0.46    31
                                                     29  0.50    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  583 (62 KB)
  Total size of DFA:  140 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  18.96u 0.09s 19.05t   Elapsed:  00:00:24
  Total cpu time:  18.97u 0.09s 19.06t   Elapsed:  00:00:26
  Start:  Thu Aug 15 10:52:52 2013   End:  Thu Aug 15 10:53:18 2013

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PHA02713	557	hypothetical protein; Provisional	99.53
KOG4441|consensus	571		99.53
PHA02790	480	Kelch-like protein; Provisional	99.27
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.13
PHA03098	534	kelch-like protein; Provisional	98.94
KOG4350|consensus	620		98.55
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.38
KOG2075|consensus	521		97.74
KOG4591|consensus	280		97.18
KOG0783|consensus	1267		96.83
KOG0783|consensus	1267		96.76
KOG2838|consensus	401		94.24
KOG4682|consensus	488		93.04
KOG2838|consensus	401		90.44
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	80.4

>PHA02713 hypothetical protein; Provisional

Probab=99.53  E-value=5.3e-15  Score=129.11  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=51.4

Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238         11 NNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus        11 ~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      ..|...++..|++||.++.||||+|.+++|++|+|||+ ||||||+||++||++++.
T Consensus         6 ~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~-vLaa~S~YF~amF~~~~~   61 (557)
T PHA02713          6 IKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKT-ILAAGSKYFRTLFTTPMI   61 (557)
T ss_pred             hhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHH-HHhhcCHHHHHHhcCCch
Confidence            46899999999999999999999999954789999995 999999999999998754

>KOG4441|consensus

Probab=99.53  E-value=4.6e-15  Score=130.59  Aligned_cols=71  Identities=21%  Similarity=0.205  Sum_probs=59.7

Q ss_pred             ceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCCCceeeeccc
Q psy16238          5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLSTKKS   77 (123)
Q Consensus         5 ~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~~~~l~v~~~   77 (123)
                      ...+....|...+++.|+.||+++.||||+|.++ +++|+|||+ |||||||||++||+++..+...-.+...
T Consensus        11 ~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~-~~~~~aHR~-VLAa~S~YFraMFt~~l~e~~~~~i~l~   81 (571)
T KOG4441|consen   11 TSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVG-DREFPAHRV-VLAACSPYFRAMFTSGLKESKQKEINLE   81 (571)
T ss_pred             ccccccHHHHHHHHHHHHHHHHhCCCceEEEEEC-CeeechHHH-HHHhccHHHHHHhcCCcccccceEEEEe
Confidence            3456677899999999999999999999999997 899999995 9999999999999986554444443333

>PHA02790 Kelch-like protein; Provisional

Probab=99.27  E-value=1.8e-12  Score=110.95  Aligned_cols=48  Identities=8%  Similarity=-0.142  Sum_probs=40.8

Q ss_pred             HHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCC
Q psy16238         18 LNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEI   68 (123)
Q Consensus        18 l~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~   68 (123)
                      ...+-.||..+.||||++++  |++|+|||+ ||||||||||+||++++.+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~--~~~~~~HR~-VLAa~S~YFraMF~~~~~E   57 (480)
T PHA02790         10 CKNILALSMTKKFKTIIEAI--GGNIIVNST-ILKKLSPYFRTHLRQKYTK   57 (480)
T ss_pred             hhhHHHHHhhhhhceEEEEc--CcEEeeehh-hhhhcCHHHHHHhcCCccc
Confidence            34455789999999998888  579999995 9999999999999987643

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.13  E-value=2.4e-11  Score=82.35  Aligned_cols=44  Identities=14%  Similarity=0.110  Sum_probs=38.2

Q ss_pred             HHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCC
Q psy16238         21 FDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus        21 L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      |+++++++.++|++|.++||+.|+||| .||+++|+||+.||.+.
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk-~iL~~~S~~F~~~~~~~   44 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHK-NILAARSPYFRNLFEGS   44 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-H-HHHHHHBHHHHHHHTTT
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeech-hhhhccchhhhhccccc
Confidence            688999999999999997689999999 59999999999999987

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA03098 kelch-like protein; Provisional

Probab=98.94  E-value=2.3e-10  Score=97.49  Aligned_cols=39  Identities=10%  Similarity=-0.055  Sum_probs=35.9

Q ss_pred             cCCCccEEEec--CCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238         27 NETLVDVTLAR--PRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus        27 ~~~l~DVtL~v--~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      ++.||||+|.+  + |++|+|||+ ||||+|+||++||.+.+.
T Consensus         6 ~~~~~Dv~l~~~~~-~~~~~~Hk~-vLaa~S~yF~~mf~~~~~   46 (534)
T PHA03098          6 LQKFCDESIIIVNG-GGIIKVHKI-ILSSSSEYFKKMFKNNFK   46 (534)
T ss_pred             cCCCCCEEEEEEcC-CEEEEeHHH-HHHhhhHHHHHHHhCCCC
Confidence            88999999987  6 999999995 999999999999998765

>KOG4350|consensus

Probab=98.55  E-value=1.9e-08  Score=88.33  Aligned_cols=51  Identities=20%  Similarity=0.158  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCC
Q psy16238         16 HLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEI   68 (123)
Q Consensus        16 ~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~   68 (123)
                      ++.+.|.+|.-+..+.|||++++ ..+|||||+ ||||+|.|||+|+-+++..
T Consensus        30 ~fS~~~~~l~~~e~y~DVtfvve-~~rfpAHRv-ILAaRs~yFRAlLYgGm~E   80 (620)
T KOG4350|consen   30 NFSQSFDELFTSEDYSDVTFVVE-DTRFPAHRV-ILAARSSYFRALLYGGMQE   80 (620)
T ss_pred             chhHHHHHHhhcCcccceEEEEe-ccccchhhh-hHHHHHHHHHHHHhhhhhh
Confidence            44788999999999999999998 799999995 9999999999999987643

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.38  E-value=2.1e-07  Score=58.90  Aligned_cols=34  Identities=26%  Similarity=0.190  Sum_probs=30.7

Q ss_pred             cEEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238         32 DVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus        32 DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      ||+|.++ |+.|++||. ||++.|+||+.||.+.+.
T Consensus         1 dv~i~v~-~~~~~~h~~-iL~~~s~~f~~~~~~~~~   34 (90)
T smart00225        1 DVTLVVG-GKKFKAHKA-VLAACSPYFKALFSGDFK   34 (90)
T ss_pred             CeEEEEC-CEEEehHHH-HHhhcCHHHHHHHcCCCc
Confidence            7899997 899999995 999999999999997654

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG2075|consensus

Probab=97.74  E-value=2.3e-05  Score=69.44  Aligned_cols=69  Identities=17%  Similarity=0.172  Sum_probs=56.8

Q ss_pred             eeecCCcHHHHHHHHHHHhhcCCCccEEEecCC----CceEecccceeeecCCcchHHhhcCCCCCCceeeecc
Q psy16238          7 SLRWNNHQSHLLNAFDSLLQNETLVDVTLARPR----RRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLSTKK   76 (123)
Q Consensus         7 ~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~d----g~~f~AHKv~VLAA~S~YFr~mF~~~p~~~~~l~v~~   76 (123)
                      -+.|......+....-.+..+..++||.+++++    .+.||||| .|||..|..|.+||.++.-.....++..
T Consensus        91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk-~vla~gS~VFdaMf~g~~a~~~s~ei~l  163 (521)
T KOG2075|consen   91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHK-LVLADGSDVFDAMFYGGLAEDASLEIRL  163 (521)
T ss_pred             CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhh-hhhhcchHHHHHHhccCcccccCceeec
Confidence            467888889999999999999999999999863    26899999 6999999999999998765443333333

>KOG4591|consensus

Probab=97.18  E-value=0.00022  Score=58.33  Aligned_cols=48  Identities=19%  Similarity=0.095  Sum_probs=42.2

Q ss_pred             CCcHHHHHHHHHHHhhcCCCccEEEecCC--CceEecccceeeecCCcchH
Q psy16238         11 NNHQSHLLNAFDSLLQNETLVDVTLARPR--RRSGEACGAQDLSKCPAGSP   59 (123)
Q Consensus        11 ~~h~s~ll~~L~~LR~~~~l~DVtL~v~d--g~~f~AHKv~VLAA~S~YFr   59 (123)
                      .++.+.++..-.+|++..+|+|+++.++|  .+.+|||| .||||+|++..
T Consensus        47 dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHK-fVLAARsD~Wk   96 (280)
T KOG4591|consen   47 DSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHK-FVLAARSDFWK   96 (280)
T ss_pred             hhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhh-hhhhhhcchhh
Confidence            46888999999999999999999998863  26799999 69999999874

>KOG0783|consensus

Probab=96.83  E-value=0.00035  Score=66.05  Aligned_cols=56  Identities=16%  Similarity=-0.070  Sum_probs=40.2

Q ss_pred             cCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCCCceeeecccCCCccccCCCcccc
Q psy16238         27 NETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLSTKKSGPCTAENNNKTSAH   91 (123)
Q Consensus        27 ~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~~~~l~v~~~~~~~~~~~~~~~~~   91 (123)
                      ....-|+.|.+.||+.|+||| ++|+|+++||..||.....+..        -|+++.+-.|+.|
T Consensus       707 h~e~~d~~i~~KDGkvl~aHk-c~L~aRlEYF~smf~~~w~E~s--------S~t~~~~p~~~e~  762 (1267)
T KOG0783|consen  707 HEETMDTVIKLKDGKVLKAHK-CFLSARLEYFSSMFQFVWMESS--------SITVNLSPLTVEH  762 (1267)
T ss_pred             CccceeEEEEecCCcCcccce-eEeeeHHHHHHHHHHHHHhhhc--------cceeecCcchHHH
Confidence            356667777777899999999 5999999999999986432221        1555555555544

>KOG0783|consensus

Probab=96.76  E-value=0.0012  Score=62.62  Aligned_cols=47  Identities=17%  Similarity=0.093  Sum_probs=38.3

Q ss_pred             HHHHHHHHhh----cCCCccEEEecCCCceEecccceeeecCCcchHHhhcCC
Q psy16238         17 LLNAFDSLLQ----NETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus        17 ll~~L~~LR~----~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      +-..|..|..    ...+-|||+.|+ ++.|+||| .||++.|+|||.+|...
T Consensus       541 fe~sf~kLl~e~~~~ds~hDVtf~vg-~~~F~aHK-fIl~~rs~flrkL~l~~  591 (1267)
T KOG0783|consen  541 FEGSFPKLLSEENYKDSFHDVTFYVG-TSMFHAHK-FILCARSSFLRKLLLQK  591 (1267)
T ss_pred             chhhhHHHhhccccccccceEEEEec-Ceecccce-EEEEeccHHHHHHHHhh
Confidence            4445555554    446789999997 99999999 79999999999999754

>KOG2838|consensus

Probab=94.24  E-value=0.019  Score=49.01  Aligned_cols=52  Identities=13%  Similarity=-0.060  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238         14 QSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus        14 ~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      ...++..|.++++...-.|+-|... -..|||||+ +||+++|+|+.+....++
T Consensus       114 a~sf~kD~ad~ye~k~c~dldiiFk-eTcfpahRA-~laaRCpffK~l~nsd~e  165 (401)
T KOG2838|consen  114 ANSFLKDFADGYERKVCGDLDIIFK-ETCFPAHRA-FLAARCPFFKILANSDEE  165 (401)
T ss_pred             hhHHHHHHhhhhheeeeccceeeee-eccchHHHH-HHHhhCcchhhhccCCCC
Confidence            3456778888887778888888886 678999995 999999999999887665

>KOG4682|consensus

Probab=93.04  E-value=0.11  Score=46.06  Aligned_cols=45  Identities=13%  Similarity=-0.019  Sum_probs=38.2

Q ss_pred             HHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238         20 AFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus        20 ~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      .+..|..+|.-+||+|.+= |++++-||. -|.- |+||.+||.+...
T Consensus        59 iyq~lf~q~enSDv~l~al-g~eWrlHk~-yL~Q-S~yf~smf~Gtw~  103 (488)
T KOG4682|consen   59 IYQNLFLQGENSDVILEAL-GFEWRLHKP-YLFQ-SEYFKSMFSGTWK  103 (488)
T ss_pred             HHHHHHhcCCCcceehhhc-cceeeeeee-eeec-cHHHHHHhccccC
Confidence            4677888999999999886 899999993 7765 7999999998654

>KOG2838|consensus

Probab=90.44  E-value=0.075  Score=45.49  Aligned_cols=46  Identities=7%  Similarity=-0.018  Sum_probs=31.7

Q ss_pred             HHHHHHhhcCCCccEE-EecCCCc--------------eEecccceeeecCCcchHHhhcCC
Q psy16238         19 NAFDSLLQNETLVDVT-LARPRRR--------------SGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus        19 ~~L~~LR~~~~l~DVt-L~v~dg~--------------~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      ..+..|++....-|+. +.+.||+              +++||+ +|.||+|++||.++...
T Consensus       224 ~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahk-ai~aaRS~ffRnLL~Rk  284 (401)
T KOG2838|consen  224 EDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHK-AIAAARSKFFRNLLLRK  284 (401)
T ss_pred             HHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHH-HHHHhhhHHHHHHHHHH
Confidence            3455566655555544 4333354              699999 59999999999999753

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=80.40  E-value=0.75  Score=29.38  Aligned_cols=33  Identities=15%  Similarity=0.082  Sum_probs=27.2

Q ss_pred             EEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238         33 VTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus        33 VtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      |+|+..||+.|.+-+  -.|..|..++.||.+...
T Consensus         3 v~L~SsDg~~f~V~~--~~a~~S~~i~~ml~~~~~   35 (62)
T PF03931_consen    3 VKLVSSDGQEFEVSR--EAAKQSKTIKNMLEDLGD   35 (62)
T ss_dssp             EEEEETTSEEEEEEH--HHHTTSHHHHHHHHCTCC
T ss_pred             EEEEcCCCCEEEeeH--HHHHHhHHHHHHHhhhcc
Confidence            678887899999998  466789999999986543

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.72
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.71
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.7
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.69
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.68
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.68
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.67
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.66
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.65
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.65
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.62
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.6
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.59
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.59
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.57
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.45
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.35
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.34
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.33
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.21
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	97.94
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	97.51
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	96.49
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	95.1
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	94.21
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	93.48

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.72  E-value=1.7e-18  Score=121.45  Aligned_cols=65  Identities=15%  Similarity=0.195  Sum_probs=57.8

Q ss_pred             CCCceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCC
Q psy16238          2 SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEI   68 (123)
Q Consensus         2 ~~~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~   68 (123)
                      +++.+.++|..|++.+++.|++||+++.+|||+|.++ |+.|+|||+ ||||+|+||++||.+.+..
T Consensus         1 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~aHk~-vLaa~S~yF~~mf~~~~~e   65 (124)
T 2ihc_A            1 SMSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVE-GQRFRAHRS-VLAACSSYFHSRIVGQADG   65 (124)
T ss_dssp             --CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEET-TEEEEECHH-HHHHHBHHHHHHHTTC---
T ss_pred             CCceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEEC-CEEEecHHH-HHHHcCHHHHHHHcCCCCC
Confidence            4578999999999999999999999999999999997 999999995 9999999999999987643

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.71  E-value=3.6e-18  Score=121.64  Aligned_cols=64  Identities=16%  Similarity=0.224  Sum_probs=59.4

Q ss_pred             CCceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCC
Q psy16238          3 SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEI   68 (123)
Q Consensus         3 ~~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~   68 (123)
                      ++.+.++|..|+..+++.|++||+++.+|||+|.++ |+.|+|||+ ||||+|+||++||.+.+..
T Consensus         9 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~aHk~-vLaa~S~yF~~~f~~~~~e   72 (138)
T 2z8h_A            9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVE-GQRFRAHRS-VLAACSSYFHSRIVGQTDA   72 (138)
T ss_dssp             TCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHTTCCCT
T ss_pred             CCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEEC-CEEEechHH-HHHHcCHHHHHHHhcCCCC
Confidence            367899999999999999999999999999999997 999999995 9999999999999987654

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.70  E-value=7.1e-18  Score=117.62  Aligned_cols=65  Identities=25%  Similarity=0.286  Sum_probs=60.1

Q ss_pred             CCCceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCC
Q psy16238          2 SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEI   68 (123)
Q Consensus         2 ~~~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~   68 (123)
                      +++.+.+.|..|...+++.|++||+++.+|||+|.++ |+.|+|||. |||++|+||++||.+.+..
T Consensus         4 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~aHk~-vLaa~S~yF~~~f~~~~~e   68 (125)
T 3ohu_A            4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVE-RKEFRAHRA-VLAACSEYFWQALVGQTKN   68 (125)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEET-TEEEEECHH-HHHHHBHHHHHHHTTCCCS
T ss_pred             CCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEEC-CEEEechHH-HHHHcCHHHHHHhcCCCCC
Confidence            3577899999999999999999999999999999997 999999995 9999999999999987654

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.69  E-value=3.4e-18  Score=119.07  Aligned_cols=58  Identities=19%  Similarity=0.190  Sum_probs=54.1

Q ss_pred             eeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCC
Q psy16238          7 SLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGP   66 (123)
Q Consensus         7 ~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p   66 (123)
                      +++|++|...+++.|++||+++.+|||+|.++ |+.|+|||+ |||++|+||++||.+++
T Consensus         1 s~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~aHk~-vLaa~S~yF~~~f~~~~   58 (119)
T 3b84_A            1 SMSFVQHSVRVLQELNKQREKGQYCDATLDVG-GLVFKAHWS-VLACCSHFFQSLYGDGS   58 (119)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHTCSCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHTTTT
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCcceEEEEC-CEEEEeeHH-HHhhcCHHHHHHHCCCC
Confidence            46899999999999999999999999999997 999999995 99999999999999865

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.68  E-value=1.1e-17  Score=115.56  Aligned_cols=59  Identities=19%  Similarity=0.281  Sum_probs=53.7

Q ss_pred             eeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238          7 SLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus         7 ~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      .++|+.|.+.+++.|+++|.++.+|||+|.++ |+.|+|||+ |||++|+||++||.+.+.
T Consensus         2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~aHk~-vLaa~S~~F~~~f~~~~~   60 (120)
T 2if5_A            2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVE-GREFPTHRS-VLAACSQYFKKLFTSGAV   60 (120)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHHC---
T ss_pred             CcCccchHHHHHHHHHHHHhcCCCCCeEEEEC-CEEEeHHHH-HHHHhCHHHHHHhcCCcc
Confidence            57899999999999999999999999999997 999999995 999999999999997653

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.68  E-value=1.5e-17  Score=116.21  Aligned_cols=64  Identities=22%  Similarity=0.269  Sum_probs=57.3

Q ss_pred             CCceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCC
Q psy16238          3 SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEI   68 (123)
Q Consensus         3 ~~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~   68 (123)
                      ++.+.++|..|.+.+++.|++||.++.+|||+|.++ |+.|+|||+ |||++|+||++||.+.+..
T Consensus         2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~aHk~-iLaa~S~~F~~~f~~~~~e   65 (127)
T 1r29_A            2 SADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVS-REQFRAHKT-VLMACSGLFYSIFTDQLKR   65 (127)
T ss_dssp             ---CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHTSTTTT
T ss_pred             CCCccccchhHHHHHHHHHHHHHhcCCCCCEEEEEC-CEEEehHHH-HHHHhCHHHHHHhcCCccC
Confidence            467789999999999999999999999999999997 999999995 9999999999999986543

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.67  E-value=1.2e-17  Score=116.54  Aligned_cols=61  Identities=20%  Similarity=0.047  Sum_probs=57.8

Q ss_pred             CCceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCC
Q psy16238          3 SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus         3 ~~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      ++.+.+.|.+|+..+++.|+++|.++.+|||+|.++ |+.|+|||. |||+||+||++||.+.
T Consensus         4 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~-~~~f~aHk~-vLaa~S~~F~~~f~~~   64 (116)
T 3fkc_A            4 RKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVE-DRKFRAHKN-ILSASSTYFHQLFSVA   64 (116)
T ss_dssp             CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEET-TEEEEECHH-HHHHHCHHHHHHTTSC
T ss_pred             CceeeecCccHHHHHHHHHHHHHhcCCceeEEEEEC-CEEEehhHH-HHHHcCHHHHHHHcCC
Confidence            478899999999999999999999999999999997 999999995 9999999999999975

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.66  E-value=2.3e-17  Score=114.94  Aligned_cols=60  Identities=18%  Similarity=0.067  Sum_probs=56.3

Q ss_pred             CceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCC
Q psy16238          4 PHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus         4 ~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      +.+.++|+.|++.+++.|+++|.++.+|||+|.++ |+.|+|||+ |||++|+||++||.+.
T Consensus         2 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~aHk~-vLaa~S~yF~~~f~~~   61 (121)
T 1buo_A            2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVD-SQEFHAHRT-VLACTSKMFEILFHRN   61 (121)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEES-SCEEEECHH-HHHHHCHHHHHHTTSC
T ss_pred             CceeccCcchHHHHHHHHHHHHhcCCCCCEEEEEC-CEEEehhHH-HHhhcCHHHHHHHcCC
Confidence            45789999999999999999999999999999997 999999995 9999999999999874

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.65  E-value=2.3e-17  Score=116.01  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=57.6

Q ss_pred             CCceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCC
Q psy16238          3 SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus         3 ~~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      ++.+.++|+.|...++..|+++|+++.+|||+|.++ |+.|+|||+ |||++|+||++||.+.
T Consensus         6 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~~Hk~-vLaa~S~~F~~~f~~~   66 (129)
T 3ga1_A            6 AQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVK-GHAFKAHRA-VLAASSSYFRDLFNNS   66 (129)
T ss_dssp             -CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEET-TEEEEECHH-HHHHHBHHHHHHHHHC
T ss_pred             CceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEEC-CEEEEehHH-HHHHcCHHHHHHHcCC
Confidence            578999999999999999999999999999999997 999999995 9999999999999976

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.65  E-value=3.3e-17  Score=118.26  Aligned_cols=63  Identities=14%  Similarity=0.083  Sum_probs=56.6

Q ss_pred             CCCceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCC
Q psy16238          2 SSPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGP   66 (123)
Q Consensus         2 ~~~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p   66 (123)
                      ..+.+.++|+.|...+++.|++||+++.+|||+|.++ |+.|+|||+ ||||+|+||++||.+.+
T Consensus        19 ~~~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~aHk~-vLaa~S~yF~~mf~~~~   81 (144)
T 2ppi_A           19 YFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLD-GEEIPVQKN-ILAAASPYIRTKLNYNP   81 (144)
T ss_dssp             CCCCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHHHCC
T ss_pred             eeeeeeecCcchHHHHHHHHHHHHhcCCCcceEEEEC-CEEEehHHH-HHHHcCHHHHHHHcCCC
Confidence            4577899999999999999999999999999999997 999999995 99999999999998754

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.62  E-value=7.9e-17  Score=114.77  Aligned_cols=57  Identities=18%  Similarity=0.119  Sum_probs=48.7

Q ss_pred             eecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCC
Q psy16238          8 LRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGP   66 (123)
Q Consensus         8 l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p   66 (123)
                      -.|..|...+++.|++||+++.+|||+|.++ |+.|+|||+ |||++|+||++||.+.+
T Consensus         3 s~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~aHk~-vLaa~S~yF~~mf~~~~   59 (135)
T 2yy9_A            3 SGSSGHSVRVLQELNKQREKGQYCDATLDVG-GLVFKAHWS-VLACCSHFFQRIYGDGT   59 (135)
T ss_dssp             ----CHHHHHHHHHHHHHHTTTTCCEEEEET-TEEEEECHH-HHHHHCHHHHHTCC---
T ss_pred             CccccHHHHHHHHHHHHHhcCCCcceEEEEC-CEEEehHHH-HHHHhCHHHHHHHcCCC
Confidence            3678999999999999999999999999997 999999995 99999999999999765

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.60  E-value=4.3e-16  Score=121.44  Aligned_cols=64  Identities=14%  Similarity=-0.002  Sum_probs=55.6

Q ss_pred             CCceeeecCCcHHHHHHHHHHHhhcCCCccEEEecC--CCceEecccceeeecCCcchHHhhcCCCC
Q psy16238          3 SPHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARP--RRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus         3 ~~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~--dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      +..+.+.|..|+..++..|++||.++.+|||+|.++  +|+.|+|||+ |||++|+||++||.+++.
T Consensus         5 ~~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~-vLaa~S~yF~~mf~~~~~   70 (279)
T 3i3n_A            5 MEAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRS-VLAAATEYFTPLLSGQFS   70 (279)
T ss_dssp             CCEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHH-HHHHHCTTSGGGCCC---
T ss_pred             ccccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHH-HHHHcCHHHHHHhcCCCc
Confidence            456889999999999999999999999999999995  3899999995 999999999999998654

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.59  E-value=1.9e-16  Score=109.07  Aligned_cols=54  Identities=17%  Similarity=0.100  Sum_probs=50.7

Q ss_pred             cCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCC
Q psy16238         10 WNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus        10 w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      +.+|+..+++.|++||.++.+|||+|.++ |+.|+|||. |||++|+||++||.+.
T Consensus         2 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~aHk~-vLaa~S~yF~~~f~~~   55 (116)
T 2vpk_A            2 MSHHCEHLLERLNKQREAGFLCDCTIVIG-EFQFKAHRN-VLASFSEYFGAIYRST   55 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHTTC
T ss_pred             chhHHHHHHHHHHHHHhcCCCCcEEEEEC-CEEEeccHH-HHhhcCHHHHHHHcCC
Confidence            45789999999999999999999999997 999999995 9999999999999976

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.59  E-value=1.4e-16  Score=110.84  Aligned_cols=57  Identities=23%  Similarity=0.243  Sum_probs=52.4

Q ss_pred             eeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcC
Q psy16238          6 YSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFID   64 (123)
Q Consensus         6 ~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~   64 (123)
                      ..+.|+.|...+++.|++||+++.+|||+|.++ |+.|+|||+ |||++|+||++||.+
T Consensus         3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~aHk~-vLaa~S~yF~~~f~~   59 (119)
T 2q81_A            3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVD-GVHFKAHKA-VLAACSEYFKMLFVD   59 (119)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCcceEEEEC-CEEEehhHH-HHHHcCHHHHHHHcC
Confidence            346788999999999999999999999999997 999999995 999999999999986

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.57  E-value=6.3e-16  Score=118.90  Aligned_cols=62  Identities=15%  Similarity=0.090  Sum_probs=48.7

Q ss_pred             CceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238          4 PHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus         4 ~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      ..+.+.++.|+..++..|++||.++.+|||+|.++ |+.|+|||+ |||++|+||++||.+++.
T Consensus         5 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~~Hr~-vLaa~S~yF~~mf~~~~~   66 (256)
T 3hve_A            5 EGSAVSDPQHAARLLRALSSFREESRFCDAHLVLD-GEEIPVQKN-ILAAASPYIRTKLNYNPP   66 (256)
T ss_dssp             -----CCTTTHHHHHHHHHTCCC--CCCCEEEEET-TEEEEECHH-HHHTTCHHHHHTC-----
T ss_pred             CCCccCChHHHHHHHHHHHHHHhcCCCcceEEEEC-CEEEechHH-HHHHcCHHHHHHhCCCCC
Confidence            44778899999999999999999999999999997 999999995 999999999999997653

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.45  E-value=1e-14  Score=105.01  Aligned_cols=62  Identities=16%  Similarity=0.072  Sum_probs=52.2

Q ss_pred             CceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238          4 PHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus         4 ~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      +.....+..+++.++..|+++++++.+|||+|.++ |+.|+|||. |||++|+||++||.+.+.
T Consensus         8 ~~~~~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~~Hk~-iL~~~S~~F~~~f~~~~~   69 (172)
T 3htm_A            8 QNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA-GQEFQAHKA-ILAARSPVFSAMFEHEME   69 (172)
T ss_dssp             ----CCSCCCCCCHHHHHHHHHHHTCSCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHHSCCC
T ss_pred             ccccccCCCCHHHHHHHHHHHHhCCCCcceEEEEC-CEEEEeeHH-HHHHcCHHHHHHHccCcc
Confidence            33444566677889999999999999999999997 999999995 999999999999997643

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.35  E-value=4.8e-14  Score=98.94  Aligned_cols=52  Identities=17%  Similarity=0.133  Sum_probs=47.5

Q ss_pred             cHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCC
Q psy16238         13 HQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGP   66 (123)
Q Consensus        13 h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p   66 (123)
                      .++.++..|+++++++.+|||+|.++ |+.|+|||. |||++|+||++||.+..
T Consensus         8 p~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~~~~Hk~-iL~~~S~~F~~~f~~~~   59 (145)
T 4eoz_A            8 PECRLADELGGLWENSRFTDCCLCVA-GQEFQAHKA-ILAARSPVFSAMFEHEM   59 (145)
T ss_dssp             CCCCHHHHHHHHHHHTCSCCEEEEET-TEEEEECHH-HHHHHCHHHHHHHHSSS
T ss_pred             ChHHHHHHHHHHHhCCCCcceEEEEC-CEEEEeehH-HHHHcCHHHHHHHcCCC
Confidence            45568999999999999999999997 999999995 99999999999999764

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.34  E-value=2.6e-13  Score=95.51  Aligned_cols=52  Identities=12%  Similarity=-0.036  Sum_probs=44.8

Q ss_pred             ceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHH
Q psy16238          5 HYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPD   60 (123)
Q Consensus         5 ~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~   60 (123)
                      -.....+.|+..++..|+  |.++.||||||.++ |+.|+||| +||||||+||++
T Consensus         7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~-~~~f~aHk-~vLaa~S~yF~~   58 (119)
T 3m5b_A            7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVG-SQEFPAHS-LVLAGVSQQLGR   58 (119)
T ss_dssp             CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEET-TEEEEECH-HHHHTTCGGGCC
T ss_pred             CCCCCCCcchHHHHHHHH--HhcCCCcceEEEEC-CEEEeeEH-HHHHHcCHHHhc
Confidence            344556678889999997  77899999999997 99999999 599999999985

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.33  E-value=1.5e-13  Score=92.91  Aligned_cols=44  Identities=20%  Similarity=0.119  Sum_probs=36.3

Q ss_pred             HHhhcCCCccEEEecCCC---ceEecccceeeecCCcchHHhhcCCCC
Q psy16238         23 SLLQNETLVDVTLARPRR---RSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus        23 ~LR~~~~l~DVtL~v~dg---~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      +|++++.+|||+|.++||   +.|+|||. |||++|+||++||.+.+.
T Consensus         1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~-iLa~~S~~F~~~f~~~~~   47 (109)
T 2vkp_A            1 SMFNNELMADVHFVVGPPGATRTVPAHKY-VLAVGSSVFYAMFYGDLA   47 (109)
T ss_dssp             CCTTCCTTCCEEEEESSTTSCEEEEECHH-HHHHHCHHHHHHHC----
T ss_pred             CcccCCCcccEEEEECCCCCcEEEEeeHH-HHHHcCHHHHHHhcCCcc
Confidence            368899999999999743   89999995 999999999999997654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.21  E-value=3.8e-12  Score=100.05  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCC
Q psy16238         14 QSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPE   67 (123)
Q Consensus        14 ~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~   67 (123)
                      ++.+...|++|+.++.++||+|.++ |+.|+||| +||||+||||++||.+...
T Consensus       158 ~~~l~~~l~~l~~~~~~~Dv~l~v~-~~~f~~Hk-~vLaa~S~~F~~~f~~~~~  209 (312)
T 3hqi_A          158 ECRLADELGGLWENSRFTDCCLCVA-GQEFQAHK-AILAARSPVFSAMFEHEME  209 (312)
T ss_dssp             CCCHHHHHHHHHHTTCSCCEEEEET-TEEEEECH-HHHHHHCHHHHHHTTC---
T ss_pred             CchHHHHHHHHHhCCCCCceEEEEC-CEEEeHHH-HHHHHcCHHHHHHhccCcc
Confidence            3468899999999999999999997 99999999 5999999999999997643

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=97.94  E-value=3.7e-06  Score=57.18  Aligned_cols=31  Identities=6%  Similarity=-0.130  Sum_probs=27.8

Q ss_pred             cEEEecCCCceEecccceeeecCCcchHHhhcC
Q psy16238         32 DVTLARPRRRSGEACGAQDLSKCPAGSPDAFID   64 (123)
Q Consensus        32 DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~   64 (123)
                      -|+|...||++|++||. | |++|+||++||.+
T Consensus         3 ~v~L~SsDg~~F~v~r~-v-A~~S~~ik~m~~~   33 (97)
T 4ajy_C            3 YVKLISSDGHEFIVKRE-H-ALTSGTIKAMLSG   33 (97)
T ss_dssp             EEEEECTTCCEEEEEHH-H-HTTSHHHHHHHCC
T ss_pred             EEEEEecCCcEEEecHH-H-HHHhHHHHHHHHh
Confidence            37888877999999995 8 9999999999986

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=96.49  E-value=0.0011  Score=47.80  Aligned_cols=30  Identities=13%  Similarity=-0.054  Sum_probs=27.2

Q ss_pred             EEEecCCCceEecccceeeecCCcchHHhhcC
Q psy16238         33 VTLARPRRRSGEACGAQDLSKCPAGSPDAFID   64 (123)
Q Consensus        33 VtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~   64 (123)
                      |+|.+.||+.|.+|+. | |.+|+||++||.+
T Consensus         4 v~L~SsDg~~f~v~~~-v-A~~S~~ik~ml~~   33 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVE-I-AKQSVTIKTMLED   33 (141)
T ss_dssp             EEEECTTSCEEEEEGG-G-GGTCHHHHHHHHH
T ss_pred             EEEEeCCCCEEEecHH-H-HHHhHHHHHHHHh
Confidence            7888877999999995 7 8999999999986

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=95.10  E-value=0.002  Score=47.31  Aligned_cols=31  Identities=16%  Similarity=-0.020  Sum_probs=12.4

Q ss_pred             EEEecCCCceEecccceeeecCCcchHHhhcCC
Q psy16238         33 VTLARPRRRSGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus        33 VtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      |+|.+.||+.|.+|+. | |.+|+||+.||.+.
T Consensus         6 v~L~SsDg~~f~v~~~-v-A~~S~~ik~ml~~~   36 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEA-V-ALESQTIAHMVEDD   36 (160)
T ss_dssp             --CCC---------CH-H-HHTCTTTC------
T ss_pred             EEEEcCCCCEEEECHH-H-HHHhHHHHHHHHcc
Confidence            7888767999999995 7 89999999999864

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=94.21  E-value=0.016  Score=39.27  Aligned_cols=30  Identities=7%  Similarity=-0.104  Sum_probs=26.7

Q ss_pred             EEEecCCCceEecccceeeecCCcchHHhhcC
Q psy16238         33 VTLARPRRRSGEACGAQDLSKCPAGSPDAFID   64 (123)
Q Consensus        33 VtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~   64 (123)
                      |+|...||..|.+++. + |.+|.+++.||.+
T Consensus         3 v~L~SsDg~~f~V~~~-~-A~~S~~ik~ml~~   32 (96)
T 2fnj_C            3 VKLISSDGHEFIVKRE-H-ALTSGTIKAMLSG   32 (96)
T ss_dssp             EEEECTTSCEEEEEHH-H-HTTSHHHHHHHHC
T ss_pred             EEEEecCCCEEEeCHH-H-HHHhHHHHHHHHc
Confidence            7888877999999994 5 8999999999986

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=93.48  E-value=0.022  Score=38.80  Aligned_cols=31  Identities=13%  Similarity=0.019  Sum_probs=27.3

Q ss_pred             EEEecCCCceEecccceeeecCCcchHHhhcCC
Q psy16238         33 VTLARPRRRSGEACGAQDLSKCPAGSPDAFIDG   65 (123)
Q Consensus        33 VtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~   65 (123)
                      |+|...||+.|.+++. | |.+|.+++.||.++
T Consensus         6 v~L~SsDg~~f~V~~~-v-A~~S~~ik~ml~~~   36 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRS-A-AMISPTLKAMIEGP   36 (99)
T ss_dssp             EEEEETTTEEEEEEHH-H-HTTCHHHHHHHHSS
T ss_pred             EEEEecCCCEEEECHH-H-HHHhHHHHHHHhcc
Confidence            7888877999999994 5 99999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	2e-05
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	3e-04

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 2e-05
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 8  LRWNNHQSHLLNAFDSLLQNETLVDVTL 35
          +++  H S +L   + L   + L DV +
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVI 30

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 3e-04
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 6  YSLRWNNHQSHLLNAFDSLLQNETLVDVTL 35
            L+  +H + LL   + +    TL DV +
Sbjct: 4  IQLQNPSHPTGLLCKANQMRLAGTLCDVVI 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.73
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.67

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.7e-19  Score=122.41  Aligned_cols=66  Identities=20%  Similarity=0.242  Sum_probs=58.8

Q ss_pred             eeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCCCCCceeee
Q psy16238          7 SLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGPEIPENLST   74 (123)
Q Consensus         7 ~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p~~~~~l~v   74 (123)
                      .|+|++|+..++..|++||+++.||||+|.++ |++|+||| +|||++|+||++||.+.+.......+
T Consensus         2 ~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~-~~~~~~Hk-~vLa~~S~~F~~~f~~~~~e~~~~~~   67 (122)
T d1r29a_           2 QIQFTRHASDVLLNLNRLRSRDILTDVVIVVS-REQFRAHK-TVLMACSGLFYSIFTDQLKRNLSVIN   67 (122)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEET-TEEEEECH-HHHHHHCHHHHHHHTSTTTTTCSEEE
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCeEEEEEEC-CEEEEEeh-HHhhhCCHHHHHHhccchhhhcceee
Confidence            37899999999999999999999999999997 99999999 59999999999999987765544333

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.4e-18  Score=118.14  Aligned_cols=61  Identities=18%  Similarity=0.068  Sum_probs=56.4

Q ss_pred             CceeeecCCcHHHHHHHHHHHhhcCCCccEEEecCCCceEecccceeeecCCcchHHhhcCCC
Q psy16238          4 PHYSLRWNNHQSHLLNAFDSLLQNETLVDVTLARPRRRSGEACGAQDLSKCPAGSPDAFIDGP   66 (123)
Q Consensus         4 ~~~~l~w~~h~s~ll~~L~~LR~~~~l~DVtL~v~dg~~f~AHKv~VLAA~S~YFr~mF~~~p   66 (123)
                      +-+.+++++|++.++..|+++|.+|.||||+|.++ |++|+|||+ |||++|+||++||.+.+
T Consensus         2 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~-~~~~~aHk~-vLaa~S~~F~~lf~~~~   62 (121)
T d1buoa_           2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVD-SQEFHAHRT-VLACTSKMFEILFHRNS   62 (121)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEES-SCEEEECHH-HHHHHCHHHHHHTTSCC
T ss_pred             CeEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEEC-CEEEEEEHH-HhcccChhhhhhccCcc
Confidence            45678899999999999999999999999999997 899999995 99999999999998754