Psyllid ID: psy1623

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520--

MQLIFVLPQPKLLRTDFKHLPISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSYFEPTGDFDFYEKSASGRSGQECLDGKLPYVVNQVCSEDGMEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNFVFPALDRSREGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQPVTLLPQGVVKLSLLCVDAYCTGHSGRNEPSLGRKRREIASVGDSEGVVVNSEGKTKNGTDDEEQVREMIEVSVVFESRYEMPQLQTMQPAIPDSICMSNREYYSLLTTLFILLTFLIVVTAFAGFYFK

cEEEEEEcccccccccccccccEEEEcccccccccEEEEEEEcccHHHHHHHHHccccEEEEEEEEEEcccccccccEEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEcccccccEEEEcccccccEEEcccccEEEEEEEccccccccccccccccEEEEEEEEEccEEEEcccEEEEEEEEEcccccEEEEEccccccccccccccccccccccccEEEEEEEcccccccEEEEccEEEEEEEEEcccccEEcEEEEEEEEEccccccEEEEEccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHEEEEEEEEccccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEc

ccEEEEccccccEEEccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEcccccEEEEEEEEccccccccEEcccEEEEEEEEEEccEEEEEcccEEEEEEEEEccccEEEEEEEccccccccccccEEEcccccccEEEEEEccccccEEEEEEcccEEEEEEEcccccccccEEEEEEEEEccccccEEEEEEcccccccccccccccccccEcccHHHHHHHEEHcccccccccEcccccccccccEEEEEEEEEEcccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHEEccccccccccccHHHcEEEEEEcccccccccccccccccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

mqlifvlpqpkllrtdfkhlpisnniGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRsfnyravpyggqrencelsdrdardldmnnpsyfeptgdfdfyeksasgrsgqecldgklpyvVNQVcsedgmeftlrtpegflgriytygyydrcfyrgnggtaNVLRIsgaqgypdcgtqrygdtmtNIVVVQFSDyvqtsrdkrynltclfrgpgeavvtssymtansgspipieylpaenslsSRVRLQILfqgrptntiavgdpltfkldsqdgynyvtdifatnviardpysgrsvqLIDRYGYWIIESTfnhlpvnqcspqrsfsALTVTIFSfrcpvdnfvfpaldrsregdglearfnafkipesnflVFEATVRTcrdgcqpvtllpqgVVKLSLLCVDayctghsgrnepslgrkrreiasvgdsegvvvnsegktkngtddEEQVREMIEVSVVFEsryempqlqtmqpaipdsicmsnrEYYSLLTTLFILLTFLIVVTAFAGFYFK

mqlifvlpqpkllrtdfkhlpisnnigvrmRMRRQFIKKSTTAASLAACERECAESRDFICRSFnyravpyggqrenCELSDRDARDLDMNNPSYFEPTGDFDFYEKSASGRSGQECLDGKLPYVVNQVCSEDGMEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRLQILFQgrptntiavgdPLTFKLDSQDGYNYVTDIfatnviardpysgRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNFVFPALDRSREGDGLEARFnafkipesnfLVFEATVRTCRDGCQPVTLLPQGVVKLSLLCVDAYCTghsgrnepslgrkrreiasvgdsegvvvnsegktkngtddeeqvREMIEVSVVFESRYEMPQLQTMQPAIPDSICMSNREYYSLLTTLFILLTFLIVVTAFAGFYFK

**LIFVLPQPKLLRTDFKHLPISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNYRAVPYGGQ***************************FDFY**********ECLDGKLPYVVNQVCSEDGMEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNFVFPALDRSREGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQPVTLLPQGVVKLSLLCVDAYCTG**********************************************IEVSVVFESRYEMPQLQTMQPAIPDSICMSNREYYSLLTTLFILLTFLIVVTAFAGFYF*

*QLIFVLPQPKLLRTDFKHLPISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNYRAVPYGGQRENCELSDRD************EPTGDFDFYEKSASGRSGQECLDGKLPYVVNQVCSEDGMEFTLRTPEGFLGRIYTYGYYDRCF*******ANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEA***********************NSLS**V**********TNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNFVFPALDRSREGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQP**********************************************************************************************ICMSNREYYSLLTTLFILLTFLIVVTAFAGFYFK

MQLIFVLPQPKLLRTDFKHLPISNNIGVRMRMRRQFIKK************ECAESRDFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSYFEPTGDFDFYEKSASGRSGQECLDGKLPYVVNQVCSEDGMEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNFVFPALDRSREGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQPVTLLPQGVVKLSLLCVDAYCTGHSGRNEPSLGRKRREIASVGDSEGVVVNSEG**********QVREMIEVSVVFESRYEMPQLQTMQPAIPDSICMSNREYYSLLTTLFILLTFLIVVTAFAGFYFK

*QLIFVLPQPKLLRTDFKHLPISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSYFEPTGDFDFYEKSASGRSGQECLDGKLPYVVNQVCSEDGMEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNFVFPALDRSREGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQPVTLL****************************************************NGTDDEEQVREMIEVSVVFE**************IPDSICMSNREYYSLLTTLFILLTFLIVVTAFAGFYFK

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		522
328701718		1187	PREDICTED: hypothetical protein LOC10016	0.837	0.368	0.674	0.0
328701716		1181	PREDICTED: hypothetical protein LOC10016	0.837	0.370	0.674	0.0
307213317		1382	hypothetical protein EAI_13009 [Harpegna	0.837	0.316	0.597	1e-164
380028075		1371	PREDICTED: uncharacterized protein LOC10	0.779	0.296	0.603	1e-160
328781285		1358	PREDICTED: hypothetical protein LOC72452	0.789	0.303	0.599	1e-160
350409762		1374	PREDICTED: hypothetical protein LOC10074	0.781	0.296	0.611	1e-160
383858806		1345	PREDICTED: uncharacterized protein LOC10	0.787	0.305	0.615	1e-160
340718234		1359	PREDICTED: hypothetical protein LOC10064	0.787	0.302	0.613	1e-160
156554150		1359	PREDICTED: hypothetical protein LOC10011	0.814	0.312	0.584	1e-158
307168154		1434	hypothetical protein EAG_10809 [Camponot	0.837	0.304	0.551	1e-157

>gi\|328701718\|ref\|XP_003241691.1\| PREDICTED: hypothetical protein LOC100160832 isoform 2 [Acyrthosiphon pisum]	Back alignment and taxonomy information

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/500 (67%), Positives = 382/500 (76%), Gaps = 63/500 (12%)

Query: 26   IGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNYRAVPYGGQRENCELSDRDA 85
            +GVRMRM R  IK+  TA +L+ CEREC+  RDF CRSFNYR  PYG QRENCELSD++ 
Sbjct: 625  MGVRMRMARGLIKRFITAPTLSHCERECSMVRDFNCRSFNYRTAPYGTQRENCELSDQET 684

Query: 86   RDLDMNNPSYFEPTGDFDFYEKSASG-RSGQECLDGKLPYVVNQVCSEDGMEFTLRTPEG 144
            R +DM NP++FE   ++DFYEKSA G RS QECLD      V QVCSEDGMEFTLRTPEG
Sbjct: 685  RFVDMGNPAFFENAPEYDFYEKSAMGSRSSQECLD------VTQVCSEDGMEFTLRTPEG 738

Query: 145  FLGRIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQT 204
            FLGRIYT+G+YDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQT
Sbjct: 739  FLGRIYTHGFYDRCFYRGNGGTANVLRISGAQGYPDCGTQRYGDTMTNIVVVQFSDYVQT 798

Query: 205  SRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRLQILFQGRPTN 264
            SRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRL ILFQGRPT 
Sbjct: 799  SRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRLMILFQGRPTQ 858

Query: 265  TIAVGDPLTFKLDSQDGYNYVTDIFATNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPV 324
            TIAVGDPLTF+L++QDGYNY +DIFATNVIARDPYSGRSVQLIDRYG             
Sbjct: 859  TIAVGDPLTFRLEAQDGYNYASDIFATNVIARDPYSGRSVQLIDRYG------------- 905

Query: 325  NQCSPQRSFSALTVTIFSFRCPVDNFVFPALDRSREGDGLEARFNAFKIPESNFLVFEAT 384
                                CPVDNFVFP LD++REGDGLEARFNAFKIPESNFLVFEAT
Sbjct: 906  --------------------CPVDNFVFPGLDKAREGDGLEARFNAFKIPESNFLVFEAT 945

Query: 385  VRTCRDGCQPVTLLPQGVVKLSLLCVDAYCTGHSGRNEPSLGRKRREIASVGDSEGVVVN 444
            VRTCRDGCQP                 AYCT H+GR EPSLGR+RR++  +  +E  V  
Sbjct: 946  VRTCRDGCQP-----------------AYCTLHAGRTEPSLGRRRRDVGGINKNETAVEK 988

Query: 445  SEGKTKNGTDDEEQVREMIEVSVVFESRYEMP--QLQTMQPAIPDSICMSNREYYSLLTT 502
             +   +    +EE+VR++IE   V+ESRY+MP  QL T +PA P S+C+++REYYS++ +
Sbjct: 989  QKESAETTPGEEEKVRQVIE---VYESRYDMPLEQLLTSEPA-PQSVCLTSREYYSMVFS 1044

Query: 503  LFILLTFLIVVTAFAGFYFK 522
            LF+ L  LI V+  AG Y+K
Sbjct: 1045 LFMFLVLLITVSMSAGIYYK 1064

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|328701716\|ref\|XP_001949682.2\| PREDICTED: hypothetical protein LOC100160832 isoform 1 [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|307213317\|gb\|EFN88769.1\| hypothetical protein EAI_13009 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|380028075\|ref\|XP_003697737.1\| PREDICTED: uncharacterized protein LOC100866785 [Apis florea]	Back alignment and taxonomy information

>gi\|328781285\|ref\|XP_001120394.2\| PREDICTED: hypothetical protein LOC724520 [Apis mellifera]	Back alignment and taxonomy information

>gi\|350409762\|ref\|XP_003488836.1\| PREDICTED: hypothetical protein LOC100740460 [Bombus impatiens]	Back alignment and taxonomy information

>gi\|383858806\|ref\|XP_003704890.1\| PREDICTED: uncharacterized protein LOC100875191 [Megachile rotundata]	Back alignment and taxonomy information

>gi\|340718234\|ref\|XP_003397576.1\| PREDICTED: hypothetical protein LOC100649456 [Bombus terrestris]	Back alignment and taxonomy information

>gi\|156554150\|ref\|XP_001599368.1\| PREDICTED: hypothetical protein LOC100114312 [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|307168154\|gb\|EFN61433.1\| hypothetical protein EAG_10809 [Camponotus floridanus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		522
FB\|FBgn0016047		1557	nompA "no mechanoreceptor pote	0.885	0.296	0.511	2.1e-116
FB\|FBgn0029128		715	tyn "trynity" [Drosophila mela	0.344	0.251	0.265	3.8e-16
FB\|FBgn0039852		805	nyo "nyobe" [Drosophila melano	0.340	0.221	0.275	1.6e-08
FB\|FBgn0039851		774	mey "morpheyus" [Drosophila me	0.442	0.298	0.271	1.7e-08
WB\|WBGene00009926		741	noah-2 [Caenorhabditis elegans	0.308	0.217	0.258	1.5e-07
WB\|WBGene00012304		469	cutl-4 [Caenorhabditis elegans	0.371	0.413	0.252	2.3e-07
FB\|FBgn0028622		414	qsm "quasimodo" [Drosophila me	0.465	0.586	0.273	9.5e-07
FB\|FBgn0037972		231	CG10005 [Drosophila melanogast	0.287	0.649	0.331	1.3e-06
FB\|FBgn0039048		768	CG17111 [Drosophila melanogast	0.241	0.164	0.263	3e-06
FB\|FBgn0039704		744	neo "neyo" [Drosophila melanog	0.360	0.252	0.262	3.4e-06

FB\|FBgn0016047 nompA "no mechanoreceptor potential A" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
 Identities = 257/502 (51%), Positives = 320/502 (63%)

Query:     8 PQPKLLRTDFKHLPISNNIGVRMRMRRQFIKKSTTAASLAACERECAESRDFICRSFNYR 67
             P+P + R +         I  R +MRR F++++    SL  CEREC ESRDF+CRSFNYR
Sbjct:   904 PRPPITRCE--ESDNFKQIAARHKMRRHFVRRALIVPSLIQCERECIESRDFVCRSFNYR 961

Query:    68 AVPYGGQRE----------NCELSDRDARDLDMNNPSYFEPTGDFDFYEKSASGRSGQEC 117
                  G  +          NCELSDRD+R+LD+++P  F+ + ++DFYE+S  GRS  EC
Sbjct:   962 DSAASGYEDRDRDRDRDSPNCELSDRDSRELDIHDPGTFDAS-NYDFYERSI-GRSDGEC 1019

Query:   118 LDGKLPYVVNQVCSEDGMEFTLRTPEGFLGRIYTYGYYDRCFYRGNGGTANVLRISGAQG 177
             +D      V Q C+E+GMEFT+RTPEGFLGRIYTYG+YDRCF+RGNGGT NVLR+SG QG
Sbjct:  1020 MD------VTQTCNEEGMEFTIRTPEGFLGRIYTYGFYDRCFFRGNGGTVNVLRLSGPQG 1073

Query:   178 YPDCGTQRYGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPI 237
             YPDCGTQRYGDT+TNIVVVQFSD VQTSRDKRYNLTC+FRGPGEAVV+S Y+ A SGSPI
Sbjct:  1074 YPDCGTQRYGDTLTNIVVVQFSDNVQTSRDKRYNLTCIFRGPGEAVVSSGYIGAGSGSPI 1133

Query:   238 PIEYLPAENSLSSRVRLQILFQGRPTNTIAVGDPLTFKLDSQDGYNYVTDIFATNVIARD 297
             PIEYLPAEN+LSS+VRL IL+QGRPT TIAVGDPLTF+L++QDGYN+VTDIFATNV+ARD
Sbjct:  1134 PIEYLPAENTLSSKVRLSILYQGRPTTTIAVGDPLTFRLEAQDGYNHVTDIFATNVVARD 1193

Query:   298 PYSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNF-VFPALD 356
             PYSGRS+QLIDR+G  +    F  L        R    L     +F+ P  NF VF A  
Sbjct:  1194 PYSGRSIQLIDRFGCPVDPFVFPEL-----DKLRDGDTLEARFNAFKIPESNFLVFEATV 1248

Query:   357 RS-REGDGLEARFNAFKIPESNFLVFEATVRTCRDGCQPVTLLPQGVVKLSLLCVDAYCT 415
             RS REG             E +F     ++ T     +P  L  +G  +L    +D    
Sbjct:  1249 RSCREGCQPAYCPGPAGRQEPSFGRRRRSLNTTEIP-EPEALALEGSSQLEASTLDEVTV 1307

Query:   416 GHSGRNEPSLGRKRREIASVGDSEGVVVNSEGKTKNGTDDEEQVREMIEVSVVFESRYEM 475
              +S     +LG+       +G+          KTK  T++ EQVREMIEV    E   E 
Sbjct:  1308 VNSTTVSATLGQVPLNETQLGE----------KTKE-TEEPEQVREMIEVFETREE-IEK 1355

Query:   476 PQLQTMQPAIPDSICMSNREYY 497
                     A  +++CM+  EY+
Sbjct:  1356 ESYPRKLVAPVETVCMTPAEYH 1377

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0031012 "extracellular matrix" evidence=IDA

GO:0050954 "sensory perception of mechanical stimulus" evidence=NAS;IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0005576 "extracellular region" evidence=NAS

FB\|FBgn0029128 tyn "trynity" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0039852 nyo "nyobe" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0039851 mey "morpheyus" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00009926 noah-2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

WB\|WBGene00012304 cutl-4 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

FB\|FBgn0028622 qsm "quasimodo" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0037972 CG10005 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0039048 CG17111 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0039704 neo "neyo" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		522
pfam00100		252	pfam00100, Zona_pellucida, Zona pellucida-like dom	5e-13
cd01099		80	cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like d	5e-11
pfam00024		78	pfam00024, PAN_1, PAN domain	2e-05
smart00473		78	smart00473, PAN_AP, divergent subfamily of APPLE d	9e-04

>gnl\|CDD\|215716 pfam00100, Zona_pellucida, Zona pellucida-like domain	Back alignment and domain information

 Score = 68.7 bits (168), Expect = 5e-13
 Identities = 55/285 (19%), Positives = 85/285 (29%), Gaps = 66/285 (23%)

Query: 130 CSEDGMEFTLRTPEGFLGRIYTYGYYDR---CFYRGNGGTANVLRISGAQGYPDCGTQR- 185
           C+ED M   +     F   +Y    +     C       T  + R         CGT R 
Sbjct: 2   CTEDTMTVVVSKDLTFTPGLYLSSLHLGDPSCRPVETNSTHAIFRF----PLSSCGTTRQ 57

Query: 186 -------YGDTMTNIVVVQFSDYVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIP 238
                  Y + + +   V     +    D+R  ++C +      V  SS     +  P+ 
Sbjct: 58  RTGDGIVYENEIVSQPSVSVGPPITRDSDRRLPVSCSYTSRS--VSVSSVAVLPTVPPVS 115

Query: 239 IEYLPAENSLSSRVRLQ--ILFQGRPTNTIAVGDPLTFKLDSQDGYN------YVTDIFA 290
                 E SL+  +RL     +      TI +GDPL  +              ++   +A
Sbjct: 116 P-SPSGEGSLTFSLRLYTDDSYTSDYPVTIELGDPLYVEATVSVLPRSDPLVLFLDSCWA 174

Query: 291 TNVIARDPYSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNF 350
           T     DP S     LI+                                    CPVD  
Sbjct: 175 TP--GPDPDSSPRYDLIEN----------------------------------GCPVDGD 198

Query: 351 VFPALDRSREGDGLEARF--NAFKIPE-SNFLVFEATVRTCRDGC 392
               L     G+   ARF   AF+ P  S+ +    +V+ C    
Sbjct: 199 STSTLSHPV-GESHTARFSFKAFRFPGDSSQVYIHCSVKVCDKSD 242

Length = 252

>gnl\|CDD\|238532 cd01099, PAN_AP_HGF, Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins	Back alignment and domain information

>gnl\|CDD\|215662 pfam00024, PAN_1, PAN domain	Back alignment and domain information

>gnl\|CDD\|214680 smart00473, PAN_AP, divergent subfamily of APPLE domains	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		522
smart00241		253	ZP Zona pellucida (ZP) domain. ZP proteins are res	99.97
PF00100		265	Zona_pellucida: Zona pellucida-like domain; InterP	99.92
cd01099		80	PAN_AP_HGF Subfamily of PAN/APPLE-like domains; pr	99.27
PF00024		79	PAN_1: PAN domain This Prosite entry concerns appl	98.51
smart00473		78	PAN_AP divergent subfamily of APPLE domains. Apple	97.99
cd01100		73	APPLE_Factor_XI_like Subfamily of PAN/APPLE-like d	91.41
cd00129		80	PAN_APPLE PAN/APPLE-like domain; present in N-term	91.17
PF14295		51	PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A.	87.98
smart00223		79	APPLE APPLE domain. Four-fold repeat in plasma kal	86.0

>smart00241 ZP Zona pellucida (ZP) domain	Back alignment and domain information

Probab=99.97  E-value=8.8e-30  Score=252.87  Aligned_cols=220  Identities=22%  Similarity=0.370  Sum_probs=169.6

Q ss_pred             EeCCCcEEEEEeCCCCceEEEEecCCcc---CceEeccCCceeEEEEecccCCCCCCceee--C--ceEEEEEEEE-ecC
Q psy1623         129 VCSEDGMEFTLRTPEGFLGRIYTYGYYD---RCFYRGNGGTANVLRISGAQGYPDCGTQRY--G--DTMTNIVVVQ-FSD  200 (522)
Q Consensus       129 ~C~~~~m~V~v~t~~pF~G~IYvkg~~~---~C~~~~~~~~~~~l~i~l~~~~~~CG~~~~--~--~~~s~~VVVQ-~hp  200 (522)
                      +|.+++|.|.|++..+|.|+||+++.+.   +|+..+...+...+.|.++  .++||+++.  +  .+|+|+|++| +|+
T Consensus         1 ~C~~~~m~v~v~~~~~~~g~i~~~~l~l~d~~C~~~~~~~~~~~~~f~~~--l~~CGt~~~~~~~~~~ysn~v~~~~~~~   78 (253)
T smart00241        1 QCGEDQMVVSVSTDLLFPGGIYVKGLYLGDPSCRPVFTDSTSAFVSFEVP--LNGCGTRRQVNPDGIVYSNTLVVSPFHP   78 (253)
T ss_pred             CCCCCEEEEEEEecCCCCCeEEEeeEEeCCCCCCCccccCCCcEEEEEec--cccCCCeEEECCCeEEEEEEEEEccCCC
Confidence            5999999999999999999999999774   8999643333334445444  459999853  2  2799999999 899


Q ss_pred             eEeeccce-EEEEEeeeCCCCCeEEEeeccccCCCCCcceeecCccCCCCCceEEEEee---CCCceeee---ecCCeEE
Q psy1623         201 YVQTSRDK-RYNLTCLFRGPGEAVVTSSYMTANSGSPIPIEYLPAENSLSSRVRLQILF---QGRPTNTI---AVGDPLT  273 (522)
Q Consensus       201 ~~vT~~Dr-~y~V~C~y~~~~e~~vt~~~~~~~~g~p~pi~~l~~e~~~~~~v~m~I~~---~G~~v~~a---~VGd~L~  273 (522)
                      .++|..|+ .|+++|.|....+ +. ..+...   ...+. .+.......+.++|++..   .|+++..+   ++||+|+
T Consensus        79 ~~itr~~~~~~~~~C~y~~~~~-~~-~~~~~~---~~~~~-~~~~~~~g~~~~~m~l~~~~~~~~~~~~~~~~~lg~~l~  152 (253)
T smart00241       79 GFITRDDRAAYHFQCFYPENEK-VS-LNLDVS---TIPPT-ELSSVSEGPPTCSYRLYKDDSFGSPYQSADYPVLGDPVY  152 (253)
T ss_pred             CceEecCceEEEEEEEEeCCCc-eE-EEEEec---CCCCC-CcccccCCCcEEEEEeccCCCCCCcccCCCCcccCCeEE
Confidence            99999999 9999999997433 32 222111   11111 111112234578999985   46677544   6999999


Q ss_pred             EEEEEeCCCCceecEEEEEEEEECCCC---CceEEEEcCCCCceecccccCCCCCCCCCCCccccccceeccCCCCCCcc
Q psy1623         274 FKLDSQDGYNYVTDIFATNVIARDPYS---GRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSFRCPVDNF  350 (522)
Q Consensus       274 l~we~~~~~~~~y~i~V~~C~A~Dg~~---~~~~~LIDe~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~ngC~~D~~  350 (522)
                      |+|++.......++|+|++|+|.++.+   +.++.||| +|                                 ||+|+.
T Consensus       153 ~~~~~~~~~~~~~~l~v~~C~at~~~~~~~~~~~~lI~-~G---------------------------------C~~d~~  198 (253)
T smart00241      153 HEWSCDGADDPPLGLLVDNCYATPGSDPSSGPKYFIID-NG---------------------------------CPVDGY  198 (253)
T ss_pred             EEEEEccCCCCCeEEEEeeEEEcCCCCCCCCCcEEEEE-Cc---------------------------------cCCCCc
Confidence            999998642358899999999999853   68888998 88                                 999999


Q ss_pred             ccCCeeeccC-CCeEEEEEEeEEcCCCCeEEEEEEEEEccC
Q psy1623         351 VFPALDRSRE-GDGLEARFNAFKIPESNFLVFEATVRTCRD  390 (522)
Q Consensus       351 i~~~l~~~~~-~~~l~a~f~AFKFpds~~V~f~C~V~~C~~  390 (522)
                      +++.+.+..+ +..++..|+||||+++..|+|+|+|++|.+
T Consensus       199 ~~~~~~~~~~~~~~~~f~~~aF~F~~~~~v~~hC~v~vC~~  239 (253)
T smart00241      199 LDSTIPYNSSPNHYARFSVKVFKFADRSLVYFHCQIRLCDK  239 (253)
T ss_pred             cccceecCCCCcceEEEEEEEEEecCCCcEEEEEEEEEECC
Confidence            9999998765 678889999999999999999999999985

ZP proteins are responsible for sperm-adhesion fo the zona pellucida. ZP domains are also present in multidomain transmembrane proteins such as glycoprotein GP2, uromodulin and TGF-beta receptor type III (betaglycan).

>PF00100 Zona_pellucida: Zona pellucida-like domain; InterPro: IPR001507 A large domain, containing around 260 amino acids, has been recognised in a variety of receptor-like eukaryotic glycoproteins []	Back alignment and domain information

>cd01099 PAN_AP_HGF Subfamily of PAN/APPLE-like domains; present in N-terminal (N) domains of plasminogen/hepatocyte growth factor proteins, and various proteins found in Bilateria, such as leech anti-platelet proteins	Back alignment and domain information

>PF00024 PAN_1: PAN domain This Prosite entry concerns apple domains, a subset of PAN domains; InterPro: IPR003014 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []	Back alignment and domain information

>smart00473 PAN_AP divergent subfamily of APPLE domains	Back alignment and domain information

>cd01100 APPLE_Factor_XI_like Subfamily of PAN/APPLE-like domains; present in plasma prekallikrein/coagulation factor XI, microneme antigen proteins, and a few prokaryotic proteins	Back alignment and domain information

>cd00129 PAN_APPLE PAN/APPLE-like domain; present in N-terminal (N) domains of plasminogen/ hepatocyte growth factor proteins, plasma prekallikrein/coagulation factor XI and microneme antigen proteins, plant receptor-like protein kinases, and various nematode and leech anti-platelet proteins	Back alignment and domain information

>PF14295 PAN_4: PAN domain; PDB: 2YIL_E 2YIP_C 2YIO_A	Back alignment and domain information

>smart00223 APPLE APPLE domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		522
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.5 bits (104), Expect = 8e-05
 Identities = 62/472 (13%), Positives = 112/472 (23%), Gaps = 152/472 (32%)

Query: 87  DLDMNNPSY--------FEPT--GDFDFYEKSASGR---SGQECLD-GKLPYVVNQV--- 129
           D +     Y        FE     +FD  +     +   S +E          V+     
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 130 --CSEDGMEFTLRTPEGFLGRIYTYGY---YDRCFYRGNGGTANVLRISGAQGYPDCGTQ 184
                   E      + F+  +    Y              +           Y +   +
Sbjct: 68  FWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM------YIEQRDR 118

Query: 185 RYGDTMTNIVVVQFSDYVQTSRDKRY-NL-TCLFR-------------GPGEAVVTSSYM 229
            Y D         F+ Y   SR + Y  L   L               G G+  V     
Sbjct: 119 LYND------NQVFAKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD-- 169

Query: 230 TANSGS-----PIPIEYLPAENSLSSRVRLQIL----FQGRPTNTIAVGDPLTFKLDSQD 280
              S          I +L  +N  S    L++L    +Q  P  T         KL    
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 281 GYNYVTDIFATNVIARDPYSGRSVQLI--DRYGYWIIESTFNHLPVNQCSPQRSFSALTV 338
               +  +  +      PY    + L+  +        +                     
Sbjct: 230 IQAELRRLLKSK-----PYE-NCL-LVLLNVQNAKAWNA--------------------- 261

Query: 339 TIFSFRCPV-----DNFVFPALDRSREGD-GLEARFNAFKIPESNFLVFEATVRTCRDGC 392
             F+  C +        V   L  +      L+         E   L+       CR   
Sbjct: 262 --FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--LKYLDCRPQD 317

Query: 393 QPVTLLPQGVVKLSLLCVDAYCTGHSGRNEPSLGRKRREIASVGDSEGVVVNSEGKTKNG 452
                LP+ V+  +   +       S R+  +      +            N +      
Sbjct: 318 -----LPREVLTTNPRRLSII--AESIRDGLA----TWD------------NWK------ 348

Query: 453 TDDEEQVREMIEVSVVFESRYEMPQLQTMQPAIPDSICMSNREYYSLLTTLF 504
             + +++  +IE S+      E                   R+ +  L ++F
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEY------------------RKMFDRL-SVF 381

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		522
3nk4_A		297	ZONA pellucida 3; fertilization, oocyte, egg coat,	99.62
3qw9_A		176	Transforming growth factor beta receptor type 3; c	98.49
3hms_A		101	Hepatocyte growth factor; HGF/SF, hormone/growth f	97.77
3sp8_A		264	Hepatocyte growth factor alpha chain; kringle doma	95.49
2ll3_A		82	Micronemal protein 4; cell adhesion; NMR {Toxoplas	94.31
4dur_A		791	Plasminogen, serine protease; fibrinolysis, hydrol	93.84
2qj2_A		184	Hepatocyte growth factor; HGF/SF, hormone/growth f	90.89
2yil_A		138	Microneme antigen L2; sugar binding protein, apple	82.85

>3nk4_A ZONA pellucida 3; fertilization, oocyte, egg coat, vitelline E ZP domain, ZP module, egg-sperm interaction, species-specif recognition, speciation; HET: A2G FLC; 2.00A {Gallus gallus} PDB: 3nk3_A*	Back alignment and structure

Probab=99.62  E-value=3.2e-14  Score=144.24  Aligned_cols=221  Identities=18%  Similarity=0.248  Sum_probs=139.5

Q ss_pred             eEEEeCCCcEEEEEeCCCCceE------EEEecCCccCceEeccCCceeEEEEecccCCCCCCceee--Cc--eEEEEEE
Q psy1623         126 VNQVCSEDGMEFTLRTPEGFLG------RIYTYGYYDRCFYRGNGGTANVLRISGAQGYPDCGTQRY--GD--TMTNIVV  195 (522)
Q Consensus       126 v~v~C~~~~m~V~v~t~~pF~G------~IYvkg~~~~C~~~~~~~~~~~l~i~l~~~~~~CG~~~~--~~--~~s~~VV  195 (522)
                      |+|+|..+.|.|.|...-.-.|      .++.++  ..|+....+.....+.|.+  +.+.||++..  ++  .|+|.|+
T Consensus         4 V~V~C~~~~m~V~V~k~~l~~~~~i~~~~L~L~d--~~C~~~~~~~~~~~~~f~~--~l~~CGT~~~~~~~~iiY~N~l~   79 (297)
T 3nk4_A            4 VAVQCQEAQLVVTVHRDLFGTGRLINAADLTLGP--AACKHSSLNAAHNTVTFAA--GLHECGSVVQVTPDTLIYRTLIN   79 (297)
T ss_dssp             EEEEECSSEEEEEEESCCSCSSCCCCGGGEEETT--TTBCCSEEETTTTEEEEEE--ETTCTTCEEEECSSEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEHHHhCCCCccccceeEECC--CCCCCeeeCCCCcEEEEEe--cCCCCCceeEecCCEEEEEEEEE
Confidence            8999999999999987432222      233331  3899876542222334443  3579999753  33  6899988


Q ss_pred             EEecC----eEeeccceEEEEEeeeCCCCCeEEEeeccccCCCCCccee-ecCccCCCCCceEEEEeeCC---C-ceeee
Q psy1623         196 VQFSD----YVQTSRDKRYNLTCLFRGPGEAVVTSSYMTANSGSPIPIE-YLPAENSLSSRVRLQILFQG---R-PTNTI  266 (522)
Q Consensus       196 VQ~hp----~~vT~~Dr~y~V~C~y~~~~e~~vt~~~~~~~~g~p~pi~-~l~~e~~~~~~v~m~I~~~G---~-~v~~a  266 (522)
                      ....|    .|.....-.+.++|.|....  .++..... .  ...|.. .+..+.  .-.+.|++..+.   + .-...
T Consensus        80 ~~~~~~~~~~ItR~~~~~l~~~C~Y~~~~--~vs~~~~~-p--~~~~~~~~~~~~g--~~~~~m~l~~d~~~~~~~~~~~  152 (297)
T 3nk4_A           80 YDPSPASNPVIIRTNPAVIPIECHYPRRE--QVSSNAIR-P--TWSPFNSALSAEE--RLVFSLRLMSDDWSTERPFTGF  152 (297)
T ss_dssp             ECCCCCSSTTEESSCCEEEEEEEEEEC-------------C--CBCTTC------C--CCCEEEEEECTTSSSBCCSCCB
T ss_pred             EeccCCCCCceEecccEEEEEEEEEcCCC--ccccccCc-C--ccccccccccccc--ceEEEEEeccCCCcccccCCcc
Confidence            76543    36666788899999998632  23322110 0  001111 111111  124677776321   1 11346


Q ss_pred             ecCCeEEEEEEEeCCCCceecEEEEEEEEECC---CCCceEEEEcCCCCceecccccCCCCCCCCCCCccccccceeccC
Q psy1623         267 AVGDPLTFKLDSQDGYNYVTDIFATNVIARDP---YSGRSVQLIDRYGYWIIESTFNHLPVNQCSPQRSFSALTVTIFSF  343 (522)
Q Consensus       267 ~VGd~L~l~we~~~~~~~~y~i~V~~C~A~Dg---~~~~~~~LIDe~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~n  343 (522)
                      .+||+|++++++.......+.++|.+|+|...   .+..++.|||.+|                                
T Consensus       153 ~l~~~lyvev~v~~~~~~~l~l~l~~C~ATps~~~~~~~~y~lI~~~G--------------------------------  200 (297)
T 3nk4_A          153 QLGDILNIQAEVSTENHVPLRLFVDSCVAALSPDGDSSPHYAIIDFNG--------------------------------  200 (297)
T ss_dssp             CTTCEEEEEEEECCTTBCCEEEEEEEEEEESSSCTTSSSEEEEEBTTT--------------------------------
T ss_pred             cCCCEEEEEEEEecCCCCCEEEEEeeEEEeCCCCccCCceEEEEccCC--------------------------------
Confidence            89999999999876433467899999999964   2346677776677                                


Q ss_pred             CCCCCccccC---Ceee-ccCCCeEEEEEEeEEcCC--CCeEEEEEEEEEccC
Q psy1623         344 RCPVDNFVFP---ALDR-SREGDGLEARFNAFKIPE--SNFLVFEATVRTCRD  390 (522)
Q Consensus       344 gC~~D~~i~~---~l~~-~~~~~~l~a~f~AFKFpd--s~~V~f~C~V~~C~~  390 (522)
                       ||.|..+..   .+.. ..+...+.-.|+||||++  ...|+|+|.|.+|..
T Consensus       201 -C~~d~~~~~~~s~~~~~~~~~~~~rF~~~~F~F~~~~~~~vylhC~v~vC~~  252 (297)
T 3nk4_A          201 -CLVDGRVDDTSSAFITPRPREDVLRFRIDVFRFAGDNRNLIYITCHLKVTPA  252 (297)
T ss_dssp             -EEGGGGSTTCCCEECSSCSSTTEEEEEEECCEETTCSSCEEEEEEEEEEEET
T ss_pred             -CCcCCccccceeEEecCCCCCceEEEEEEeEeccCCCCCeEEEEEEEEEECC
Confidence             999988753   3322 123456777899999999  789999999999974

PyMOL of 3nk4

>3qw9_A Transforming growth factor beta receptor type 3; cytokine receptor, immunoglobulin domain, ZONA pellucida, TG ligand CO-receptor; HET: NAG BMA FUC MAN; 2.00A {Rattus norvegicus}	Back alignment and structure

>3hms_A Hepatocyte growth factor; HGF/SF, hormone/growth factor, disulfide bond, glycoprotein, kringle, pyrrolidone carboxylic acid, serine protea homolog; 1.70A {Homo sapiens} SCOP: g.10.1.1 PDB: 3hmt_A 2hgf_A 3hmr_A	Back alignment and structure

>3sp8_A Hepatocyte growth factor alpha chain; kringle domain, Met tyrosine kinase, hormone; HET: MES; 1.86A {Homo sapiens} PDB: 3hn4_A*	Back alignment and structure

>2ll3_A Micronemal protein 4; cell adhesion; NMR {Toxoplasma gondii} PDB: 2ll4_M*	Back alignment and structure

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A	Back alignment and structure

>2qj2_A Hepatocyte growth factor; HGF/SF, hormone/growth factor; 1.81A {Homo sapiens} SCOP: g.10.1.1 g.14.1.1 PDB: 1nk1_A 3mkp_A* 1gmn_A* 1gmo_A* 1bht_A* 1gp9_A* 2qj4_A	Back alignment and structure

>2yil_A Microneme antigen L2; sugar binding protein, apple-domain tandem repeat, PAN_AP, P galactose-binding lectin, cellular adhesion; 1.95A {Sarcocystis muris} PDB: 2yio_A* 2yip_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		522
d2qj2a1		91	g.10.1.1 (A:36-126) Hepatocyte growth factor {Huma	4e-05

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure


class: Small proteins
fold: Hairpin loop containing domain-like
superfamily: Hairpin loop containing domain-like
family: Hairpin loop containing domain
domain: Hepatocyte growth factor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 39  KSTTAASLAACERECAESR--DFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSYF 96
           K+    +   C   C  ++   F C++F +        R+ C     ++      +    
Sbjct: 25  KTKKVNTADQCANRCTRNKGLPFTCKAFVFDK-----ARKQCLWFPFNSMS----SGVKK 75

Query: 97  EPTGDFDFYEK 107
           E   +FD YE 
Sbjct: 76  EFGHEFDLYEN 86

PyMOL of d2qj2a1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		522
d2qj2a1		91	Hepatocyte growth factor {Human (Homo sapiens) [Ta	98.72

>d2qj2a1 g.10.1.1 (A:36-126) Hepatocyte growth factor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Small proteins
fold: Hairpin loop containing domain-like
superfamily: Hairpin loop containing domain-like
family: Hairpin loop containing domain
domain: Hepatocyte growth factor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6.2e-09  Score=86.15  Aligned_cols=61  Identities=21%  Similarity=0.487  Sum_probs=51.9

Q ss_pred             eeeeccCHHHHHHHhhcCC--CeEEeeEEeccCCCCCCCCCeEeccCCccccccCCCCceeecCCcceeecc
Q psy1623          39 KSTTAASLAACERECAESR--DFICRSFNYRAVPYGGQRENCELSDRDARDLDMNNPSYFEPTGDFDFYEKS  108 (522)
Q Consensus        39 r~~~v~S~~~C~~~C~~e~--~F~CRS~nY~~~~~~~~~~~C~Ls~~d~~sl~~~~p~~~~~~~~~dYyE~~  108 (522)
                      ++..+.|.++|.+.|+.++  .|.||||+|+..     ...|.||..++.+-    +..+..++++||||+.
T Consensus        25 ~~~~~~s~eeCA~rC~~~~~~~f~CrSF~y~~~-----~~~C~Ls~~n~~t~----~~~l~~~~~~DyYE~k   87 (91)
T d2qj2a1          25 KTKKVNTADQCANRCTRNKGLPFTCKAFVFDKA-----RKQCLWFPFNSMSS----GVKKEFGHEFDLYENK   87 (91)
T ss_dssp             EEEECSCHHHHHHHHHTTTTCSSCCCEEEEETT-----TTEEEEESSCTTST----TEEEEECTTEEEEEEG
T ss_pred             cccccCCHHHHHHHHHccCCCCceEEeEEEECC-----CCeEEEccccCCCC----CeeeecCCCccccccc
Confidence            6667889999999998854  699999999854     68999999999873    4567888999999986

PyMOL of d2qj2a1