Psyllid ID: psy16242

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380---
MSMMRSCVPAKDEHHHHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSKFAEIANSNSQFKCPPPK
ccccccccccEEcccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccEEEEEccEEEEEEEccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHEEEcccccccEEEEHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHEEEEEEEEEEEEEcccccccccHHHHHHHHHHHccEEEEccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccc
cccccccccccccccccccccccccccccEEHHHcccccccEcccEEEEEEEcccccEEEEcccHHHccccccEEEEEcccccccEEccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHccccccccccc
msmmrscvpakdehhhhpesfypyhtaarstEDLSRFkressrknkddlsprrpphrrervgvdlsefYMSVEWdilevpavrnekfytccdepylditfnITMRRKTLFYTVNIIIPCMGISFLTVLTFylpsdsgekvTLSISILISLHVFFLLVVEiipptslvvPLLGKYLIFAMILVSISICVTVVVLNvhfrspqthkmapwVKRVFIQFLPRILvmrrplynpdgshladgpliggsggsckihghVSLSNILTEAilssspqddskhlrppafshaqcppvmhrsCFCVRFIAEhtrmqddstkeSTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGtagiilqapslyddrvpidsKFAEIansnsqfkcpppk
MSMMRSCVpakdehhhhpeSFYPYHTAARSTEDLsrfkressrknkddlsprrpphrrervgvdlseFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFrspqthkmapwvkRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEhtrmqddstkesTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSKFAEiansnsqfkcpppk
MSMMRSCVPAKDEHHHHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSKFAEIANSNSQFKCPPPK
************************************************************VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAI*******************AQCPPVMHRSCFCVRFIAEHTRM*******STLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSKF****************
******CVPAKDEHHHHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRP***********************IHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSKFA***************
***************HHPESFYPYHTAARS***************************RERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILS**********RPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSKFAEIANS**********
****************HPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPL*********************************************************QCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSKFAEIANSNSQFKC****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MSMMRSCVPAKDEHHHHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDSKFAEIANSNSQFKCPPPK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query383 2.2.26 [Sep-21-2011]
P91766516 Acetylcholine receptor su N/A N/A 0.812 0.602 0.620 1e-102
P25162519 Acetylcholine receptor su no N/A 0.814 0.601 0.507 9e-87
P17644576 Acetylcholine receptor su no N/A 0.801 0.532 0.406 3e-74
P09478567 Acetylcholine receptor su no N/A 0.407 0.275 0.740 8e-70
P04757499 Neuronal acetylcholine re yes N/A 0.746 0.573 0.437 8e-68
P09481496 Neuronal acetylcholine re yes N/A 0.746 0.576 0.425 9e-68
P32297505 Neuronal acetylcholine re yes N/A 0.723 0.548 0.434 9e-68
Q8R4G9499 Neuronal acetylcholine re yes N/A 0.746 0.573 0.437 1e-67
Q9N587502 Acetylcholine receptor su yes N/A 0.744 0.567 0.493 7e-67
Q23022511 Acetylcholine receptor su no N/A 0.754 0.565 0.467 1e-66
>sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like OS=Manduca sexta GN=ARA1 PE=2 SV=1 Back     alignment and function desciption
 Score =  371 bits (952), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/324 (62%), Positives = 238/324 (73%), Gaps = 13/324 (4%)

Query: 60  RVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPC 119
            +GVDLSEFY SVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVN+IIPC
Sbjct: 192 ELGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPC 251

Query: 120 MGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAM 179
           MGISFLTVL FYLPSDSGEKV+LSISIL+SL VFFLL+ EIIPPTSLVVPLLGK+++F M
Sbjct: 252 MGISFLTVLVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTM 311

Query: 180 ILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGP 239
           IL + SICVTVVVLNVHFRSPQTH M+PWV+RVFI  LPR+LVMRRP Y  D        
Sbjct: 312 ILDTFSICVTVVVLNVHFRSPQTHTMSPWVRRVFIHVLPRLLVMRRPHYRLDPHRSRFAG 371

Query: 240 LIGGSG-------GSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHR 292
           L+ G+G       GS  +                ++           A       P +H+
Sbjct: 372 LVTGAGETTLWDEGSPGVPAPPRPPPCAPPLAPCAACAPAEAPALCDALRRWHRCPELHK 431

Query: 293 SCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQ 352
           +   + +IA+ TR +++ST+      VKEDWKYVA+VLDR FLWIFTLAV+ G+AGIILQ
Sbjct: 432 AIDGINYIADQTRKEEESTR------VKEDWKYVAMVLDRPFLWIFTLAVVVGSAGIILQ 485

Query: 353 APSLYDDRVPIDSKFAEIANSNSQ 376
           AP+LYD+R PID + +EIA + ++
Sbjct: 486 APTLYDERAPIDVRLSEIAYTAAK 509
After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
Manduca sexta (taxid: 7130)
>sp|P25162|ACH4_DROME Acetylcholine receptor subunit beta-like 2 OS=Drosophila melanogaster GN=nAcRbeta-96A PE=2 SV=3 Back     alignment and function description
>sp|P17644|ACH2_DROME Acetylcholine receptor subunit alpha-like 2 OS=Drosophila melanogaster GN=nAcRalpha-96Ab PE=2 SV=1 Back     alignment and function description
>sp|P09478|ACH1_DROME Acetylcholine receptor subunit alpha-like 1 OS=Drosophila melanogaster GN=nAcRalpha-96Aa PE=2 SV=2 Back     alignment and function description
>sp|P04757|ACHA3_RAT Neuronal acetylcholine receptor subunit alpha-3 OS=Rattus norvegicus GN=Chrna3 PE=2 SV=1 Back     alignment and function description
>sp|P09481|ACHA3_CHICK Neuronal acetylcholine receptor subunit alpha-3 OS=Gallus gallus GN=CHRNA3 PE=2 SV=2 Back     alignment and function description
>sp|P32297|ACHA3_HUMAN Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4 Back     alignment and function description
>sp|Q8R4G9|ACHA3_MOUSE Neuronal acetylcholine receptor subunit alpha-3 OS=Mus musculus GN=Chrna3 PE=2 SV=1 Back     alignment and function description
>sp|Q9N587|ACH6_CAEEL Acetylcholine receptor subunit alpha-type unc-63 OS=Caenorhabditis elegans GN=unc-63 PE=1 SV=2 Back     alignment and function description
>sp|Q23022|ACH5_CAEEL Acetylcholine receptor subunit alpha-type unc-38 OS=Caenorhabditis elegans GN=unc-38 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
148337548 564 B-type nicotinic acetylcholine receptor 0.827 0.562 0.690 1e-136
242117930 556 nicotinic acetylcholine receptor alpha4 0.825 0.568 0.692 1e-133
157954029 556 nicotinic acetylcholine receptor alpha4 0.825 0.568 0.692 1e-133
442634276 499 nicotinic acetylcholine receptor alpha 8 0.817 0.627 0.751 1e-133
375004965 563 nicotinic acetylcholine receptor alpha4 0.812 0.552 0.670 1e-131
375004963 563 nicotinic acetylcholine receptor alpha4 0.812 0.552 0.670 1e-131
124263267 549 nicotinic acetylcholine receptor alpha 5 0.798 0.557 0.677 1e-130
328716847449 PREDICTED: acetylcholine receptor subuni 0.804 0.685 0.673 1e-130
195446115 564 GK12171 [Drosophila willistoni] gi|19416 0.827 0.562 0.690 1e-130
124263265 549 nicotinic acetylcholine receptor alpha 5 0.798 0.557 0.677 1e-130
>gi|148337548|gb|ABQ58863.1| B-type nicotinic acetylcholine receptor alpha subunit [Bemisia tabaci] Back     alignment and taxonomy information
 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/378 (69%), Positives = 285/378 (75%), Gaps = 61/378 (16%)

Query: 60  RVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPC 119
            VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPC
Sbjct: 194 EVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPC 253

Query: 120 MGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAM 179
           MGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLV+PLLGKYLIFAM
Sbjct: 254 MGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVIPLLGKYLIFAM 313

Query: 180 ILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDG------- 232
           ILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFI  LPR+LVMRRP  NP+G       
Sbjct: 314 ILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP-QNPEGVPKINCG 372

Query: 233 ---------------------SHLAD------------------------GPLIGGS-GG 246
                                + L D                        G L+ G   G
Sbjct: 373 PITSTRATKGKEYEMYFYPRHTSLEDLAKLPKLPKFNDDGFYDSKEQHSSGSLMDGPLSG 432

Query: 247 SCKIHGHVSLSNILTEAILSSSPQD-DSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTR 305
           SC+IHG ++ S +  E  L+ +P D  S  LR PAFSH++CPP++HRSCFC+RFIAEHTR
Sbjct: 433 SCQIHGPITSSLMSEELSLTPTPDDGKSPVLRNPAFSHSKCPPIVHRSCFCMRFIAEHTR 492

Query: 306 MQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPIDS 365
           M ++STK      VKEDWKYVA+VLDRLFLWIFTLAV+ GTAGIILQAP+LYDDR+PID 
Sbjct: 493 MIEESTK------VKEDWKYVAMVLDRLFLWIFTLAVIAGTAGIILQAPTLYDDRIPIDK 546

Query: 366 KFAEIANSNSQFKCPPPK 383
           +FAE+A S     CPPPK
Sbjct: 547 RFAEVAMSQPFNPCPPPK 564

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242117930|ref|NP_001155997.1| nicotinic acetylcholine receptor alpha4 subunit isoform 2 precursor [Tribolium castaneum] gi|154810975|gb|ABS86906.1| nicotinic acetylcholine receptor subunit alpha4 variant [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157954029|ref|NP_001103246.1| nicotinic acetylcholine receptor alpha4 subunit isoform 1 precursor [Tribolium castaneum] gi|154810973|gb|ABS86905.1| nicotinic acetylcholine receptor subunit alpha4 variant [Tribolium castaneum] gi|221222659|gb|ACM09852.1| nicotinic acetylcholine receptor subunit a4 [Tribolium castaneum] gi|270002747|gb|EEZ99194.1| nicotinic acetylcholine receptor subunit alpha4 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|442634276|ref|NP_001262234.1| nicotinic acetylcholine receptor alpha 80B, isoform G [Drosophila melanogaster] gi|440216215|gb|AGB94927.1| nicotinic acetylcholine receptor alpha 80B, isoform G [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|375004965|gb|AFA28129.1| nicotinic acetylcholine receptor alpha4 subunit [Periplaneta americana] Back     alignment and taxonomy information
>gi|375004963|gb|AFA28128.1| nicotinic acetylcholine receptor alpha4 subunit [Periplaneta americana] Back     alignment and taxonomy information
>gi|124263267|gb|ABM97503.1| nicotinic acetylcholine receptor alpha 5-2 subunit [Sitobion avenae] Back     alignment and taxonomy information
>gi|328716847|ref|XP_001943324.2| PREDICTED: acetylcholine receptor subunit alpha-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|195446115|ref|XP_002070634.1| GK12171 [Drosophila willistoni] gi|194166719|gb|EDW81620.1| GK12171 [Drosophila willistoni] Back     alignment and taxonomy information
>gi|124263265|gb|ABM97502.1| nicotinic acetylcholine receptor alpha 5-1 subunit [Sitobion avenae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query383
FB|FBgn0015519 795 nAcRalpha-7E "nicotinic Acetyl 0.438 0.211 0.857 6.3e-104
FB|FBgn0000036567 nAcRalpha-96Aa "nicotinic Acet 0.433 0.292 0.734 8.1e-87
FB|FBgn0037212568 nAcRalpha-80B "nicotinic Acety 0.592 0.399 0.740 7.2e-84
FB|FBgn0004118519 nAcRbeta-96A "nicotinic Acetyl 0.809 0.597 0.522 1.5e-81
FB|FBgn0000039576 nAcRalpha-96Ab "nicotinic Acet 0.464 0.309 0.612 1.1e-76
WB|WBGene00006797502 unc-63 [Caenorhabditis elegans 0.733 0.559 0.509 8.6e-72
WB|WBGene00006774511 unc-38 [Caenorhabditis elegans 0.624 0.467 0.468 5.3e-71
UNIPROTKB|P18845512 chrna3 "Neuronal acetylcholine 0.592 0.443 0.462 9.8e-66
ZFIN|ZDB-GENE-070822-1506 chrna3 "cholinergic receptor, 0.428 0.324 0.573 9.8e-66
ZFIN|ZDB-GENE-090312-91512 chrna6 "cholinergic receptor, 0.480 0.359 0.556 1.1e-64
FB|FBgn0015519 nAcRalpha-7E "nicotinic Acetylcholine Receptor alpha 7E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 761 (272.9 bits), Expect = 6.3e-104, Sum P(3) = 6.3e-104
 Identities = 144/168 (85%), Positives = 156/168 (92%)

Query:    61 VGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 120
             VGVDLSEFY SVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVN+IIPCM
Sbjct:   194 VGVDLSEFYTSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNLIIPCM 253

Query:   121 GISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMI 180
             GISFLT+L FYLPSDSGEKV+LSISIL+SL VFFLL+ EIIPPTSLVVPLLGK+++F MI
Sbjct:   254 GISFLTILVFYLPSDSGEKVSLSISILLSLTVFFLLLAEIIPPTSLVVPLLGKFVLFTMI 313

Query:   181 LVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
             L + SICVTV+VLN+HFRSPQTH MAPWV+ VFI  LPR LVMRRPLY
Sbjct:   314 LDTFSICVTVLVLNIHFRSPQTHTMAPWVRTVFINQLPRFLVMRRPLY 361
GO:0005892 "acetylcholine-gated channel complex" evidence=ISS
GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS
GO:0006811 "ion transport" evidence=IEA
GO:0045211 "postsynaptic membrane" evidence=IEA
FB|FBgn0000036 nAcRalpha-96Aa "nicotinic Acetylcholine Receptor alpha 96Aa" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0037212 nAcRalpha-80B "nicotinic Acetylcholine Receptor alpha 80B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0004118 nAcRbeta-96A "nicotinic Acetylcholine Receptor beta 96A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0000039 nAcRalpha-96Ab "nicotinic Acetylcholine Receptor alpha 96Ab" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00006797 unc-63 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00006774 unc-38 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P18845 chrna3 "Neuronal acetylcholine receptor subunit alpha-3" [Carassius auratus (taxid:7957)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070822-1 chrna3 "cholinergic receptor, nicotinic, alpha 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090312-91 chrna6 "cholinergic receptor, nicotinic, alpha 6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
pfam02932228 pfam02932, Neur_chan_memb, Neurotransmitter-gated 1e-74
TIGR00860459 TIGR00860, LIC, Cation transporter family protein 2e-43
pfam02931215 pfam02931, Neur_chan_LBD, Neurotransmitter-gated i 3e-14
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region Back     alignment and domain information 
 Score =  231 bits (590), Expect = 1e-74
 Identities = 100/239 (41%), Positives = 139/239 (58%), Gaps = 16/239 (6%)

Query: 115 IIIPCMGISFLTVLTFYLPSDSG-EKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGK 173
           +IIPC+ ISFL+ L F+LP+D+G EKVTL I+ L+++ VF LL+ E +P TS VVPL+GK
Sbjct: 1   LIIPCVLISFLSWLVFWLPADAGPEKVTLGITTLLTMTVFLLLIRESLPKTSYVVPLIGK 60

Query: 174 YLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGS 233
           YL+F M + + S+   VVVLNVH RSP THKM  WV+++F++ LPR+L M+RP  +    
Sbjct: 61  YLVFTMFVFTASVEYAVVVLNVHHRSPSTHKMPEWVRKLFLRKLPRLLFMKRPPESLSPP 120

Query: 234 HLADGPLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRP---PAFSHAQCPPVM 290
              +      S       G V       E+     P+  S           S  +  P +
Sbjct: 121 AAPNLRRSSSS------SGSVLEPASGKESKGVGGPETSSGLPGGSGSGLGSPFRLSPEL 174

Query: 291 HRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGI 349
            ++   VRFIAEH R +D+  +      VKEDWKYVA+V+DRL  WIF +A + GT   
Sbjct: 175 KKALEGVRFIAEHLRSRDEFDE------VKEDWKYVAMVIDRLSRWIFPIAFVLGTLVY 227

This family includes the four transmembrane helices that form the ion channel. Length = 228
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein Back     alignment and domain information
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 383
KOG3646|consensus486 100.0
TIGR00860459 LIC Cation transporter family protein. selective w 100.0
KOG3645|consensus449 100.0
PF02932237 Neur_chan_memb: Neurotransmitter-gated ion-channel 100.0
KOG3643|consensus459 99.97
KOG3644|consensus457 99.96
KOG3642|consensus466 99.94
PF02931217 Neur_chan_LBD: Neurotransmitter-gated ion-channel 99.35
PF14494256 DUF4436: Domain of unknown function (DUF4436) 87.74
>KOG3646|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.6e-66  Score=504.11  Aligned_cols=319  Identities=35%  Similarity=0.584  Sum_probs=256.4

Q ss_pred             CCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCCCccccccccccccccceEEecccCeEEeeeeeccCCCCcc
Q psy16242         17 HPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPHRRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYL   96 (383)
Q Consensus        17 ~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~~~~y~   96 (383)
                      -|+++||||.|.|.+    +||||+|++..++++....     ++++|++.|..||||++.+.++++.+..|.||+++|+
T Consensus       153 iDItwFPFD~Q~C~m----KFGSWTY~G~~lDL~~~~~-----~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~  223 (486)
T KOG3646|consen  153 IDITWFPFDDQVCYL----KFGSWTYAGILLDLRIDDE-----DGGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYP  223 (486)
T ss_pred             EEEEEecccccEEEE----EeeeEEEcceeeeeeeccc-----cCCcchhhcccCCceeeccccccceeeecccCCCCcc
Confidence            399999999999999    9999999999999997532     4458999999999999999999999999999999999


Q ss_pred             eEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhh
Q psy16242         97 DITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLI  176 (383)
Q Consensus        97 ~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~  176 (383)
                      +++|++++|||.+||.+|+++||++++++++++|-+|+|+|||+++++|++|+.++|+.++++..|+||+++|+||.||.
T Consensus       224 dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFs  303 (486)
T KOG3646|consen  224 DVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFS  303 (486)
T ss_pred             eeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCC--CCCCCC-CccccCC
Q psy16242        177 FAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPL--IGGSGG-SCKIHGH  253 (383)
Q Consensus       177 ~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~--~~~~~~-~~~~~~~  253 (383)
                      +||++|++|++.||+|+|+|||+|++|.|++|.|++|+.|+|++|+|+||........ ..++.  ...... ..+....
T Consensus       304 c~m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  382 (486)
T KOG3646|consen  304 CCMFIVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPFILRRTHP-SLRMKELDRKLKRGEHKSAEA  382 (486)
T ss_pred             HHHHHHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCCccccCCc-hhhhhhhhhhcccccccchhh
Confidence            9999999999999999999999999999999999999999999999999933222111 00000  000000 0000000


Q ss_pred             CcccccccccccCC--CCCCCCCCCC--CC-CCC---CCC---CchHHHHHHHHHHHHHHHhhccccccccccchhhhhh
Q psy16242        254 VSLSNILTEAILSS--SPQDDSKHLR--PP-AFS---HAQ---CPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKED  322 (383)
Q Consensus       254 ~~~~~~~~~~~~~~--~~~~~~~~~~--~~-~~~---~~~---~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~E  322 (383)
                        ...  .......  ..+...+...  +. ..+   ...   ...+++.+.++++.|.+++++++++++      +++|
T Consensus       383 --~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~~~~------~~~d  452 (486)
T KOG3646|consen  383 --NGL--DGFDLFNQRVSQSLTPRGRTASLPVISEHVSTATQFILKELHLILKELRAILDRMEEDDKEEA------LQSD  452 (486)
T ss_pred             --hcc--ccccCCCccccCCCCCcccccCCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH------HHhh
Confidence              000  0000000  0000000000  00 000   000   124567888999999999999999999      9999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCccc
Q psy16242        323 WKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLY  357 (383)
Q Consensus       323 Wk~vA~VlDRlfL~iF~l~~~v~T~~i~~~~p~~~  357 (383)
                      |||+|||+||+||++|+++++++  +|++.+|++.
T Consensus       453 WkFAAmvVDRlCL~~Fs~fiii~--~i~~~~p~l~  485 (486)
T KOG3646|consen  453 WKFAAMVVDRLCLLAFSVFIVMC--GILLSAPHLV  485 (486)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHH--HHhhcCCccC
Confidence            99999999999999999999888  8899999875

>TIGR00860 LIC Cation transporter family protein Back     alignment and domain information
>KOG3645|consensus Back     alignment and domain information
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>KOG3643|consensus Back     alignment and domain information
>KOG3644|consensus Back     alignment and domain information
>KOG3642|consensus Back     alignment and domain information
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ] Back     alignment and domain information
>PF14494 DUF4436: Domain of unknown function (DUF4436) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
4aq5_A461 Gating Movement In Acetylcholine Receptor Analysed 8e-52
2bg9_A370 Refined Structure Of The Nicotinic Acetylcholine Re 5e-41
2bg9_A370 Refined Structure Of The Nicotinic Acetylcholine Re 8e-05
1oed_A227 Structure Of Acetylcholine Receptor Pore From Elect 2e-40
4aq5_B493 Gating Movement In Acetylcholine Receptor Analysed 1e-39
1oed_B250 Structure Of Acetylcholine Receptor Pore From Elect 3e-37
4aq5_C522 Gating Movement In Acetylcholine Receptor Analysed 1e-36
4aq5_E488 Gating Movement In Acetylcholine Receptor Analysed 5e-34
1oed_C260 Structure Of Acetylcholine Receptor Pore From Elect 2e-29
2bg9_C369 Refined Structure Of The Nicotinic Acetylcholine Re 2e-29
1oed_E260 Structure Of Acetylcholine Receptor Pore From Elect 3e-27
2bg9_E370 Refined Structure Of The Nicotinic Acetylcholine Re 2e-26
2ksr_A164 Nmr Structures Of Tm Domain Of The N-Acetylcholine 9e-26
2bg9_B370 Refined Structure Of The Nicotinic Acetylcholine Re 1e-25
2bg9_B370 Refined Structure Of The Nicotinic Acetylcholine Re 1e-05
2lly_A137 Nmr Structures Of The Transmembrane Domains Of The 7e-24
2lm2_A137 Nmr Structures Of The Transmembrane Domains Of The 4e-22
2lkg_A140 Wsa Major Conformation Length = 140 4e-17
2k58_B35 Nmr Structures Of The First Transmembrane Domain Of 1e-07
1dxz_A33 M2 Transmembrane Segment Of Alpha-Subunit Of Nicoti 9e-06
3sh1_A230 Ac-Achbp Ligand Binding Domain Mutated To Human Alp 9e-06
3sq6_A204 Crystal Structures Of The Ligand Binding Domain Of 7e-05
3t4m_A230 Ac-Achbp Ligand Binding Domain Mutated To Human Alp 9e-05
2xnt_A236 Acetylcholine Binding Protein (Achbp) As Template F 1e-04
2xz6_A217 Mtset-Modified Y53c Mutant Of Aplysia Achbp Length 2e-04
2xz5_A217 Mmts-Modified Y53c Mutant Of Aplysia Achbp In Compl 2e-04
2br7_A217 Crystal Structure Of Acetylcholine-Binding Protein 2e-04
2byp_A214 Crystal Structure Of Aplysia Californica Achbp In C 2e-04
2yme_A205 Crystal Structure Of A Mutant Binding Protein (5htb 2e-04
2ymd_A212 Crystal Structure Of A Mutant Binding Protein (5htb 2e-04
2pgz_A230 Crystal Structure Of Cocaine Bound To An Ach-bindin 2e-04
2byn_A227 Crystal Structure Of Apo Achbp From Aplysia Califor 2e-04
3pmz_A227 Crystal Structure Of The Complex Of Acetylcholine B 2e-04
3gua_A217 Sulfates Bound In The Vestibule Of Achbp Length = 2 2e-04
2wn9_A228 Crystal Structure Of Aplysia Achbp In Complex With 2e-04
2x00_D227 Crystal Structure Of A-Achbp In Complex With Gymnod 2e-04
3sio_A230 Ac-Achbp Ligand Binding Domain (Not Including Beta 2e-04
2qc1_B212 Crystal Structure Of The Extracellular Domain Of Th 5e-04
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461 Back     alignment and structure 
Iteration: 1

 Score =  201 bits (510), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 169/291 (58%), Gaps = 36/291 (12%)
Query: 64  DLSEFYMSVEWDILEVPAVRNEKFYTCC-DEPYLDITFNITMRRKTLFYTVNIIIPCMGI 122
           DLS F  S EW + +    ++  +YTCC D PYLDIT++  M+R  L++ VN+IIPC+  
Sbjct: 190 DLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLF 249
Query: 123 SFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILV 182
           SFLTVL FYLP+DSGEK+TLSIS+L+SL VF L++VE+IP TS  VPL+GKY++F MI V
Sbjct: 250 SFLTVLVFYLPTDSGEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFV 309
Query: 183 SISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRIL---VMRRPLYNPDGSHL-ADG 238
             SI VTVVV+N H RSP TH M  WV+++FI  +P ++    M+R       + + AD 
Sbjct: 310 ISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASKEKQENKIFADD 369
Query: 239 PLIGGSGGSCKIHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVR 298
             I    G  ++ G V     L +                         P +  +   V+
Sbjct: 370 IDISDISGK-QVTGEVIFQTPLIKN------------------------PDVKSAIEGVK 404
Query: 299 FIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGI 349
           +IAEH +  ++S+  +      E+WKYVA+V+D + L +F L  + GT  +
Sbjct: 405 YIAEHMKSDEESSNAA------EEWKYVAMVIDHILLCVFMLICIIGTVSV 449
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370 Back     alignment and structure
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370 Back     alignment and structure
>pdb|1OED|A Chain A, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 227 Back     alignment and structure
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493 Back     alignment and structure
>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250 Back     alignment and structure
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522 Back     alignment and structure
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488 Back     alignment and structure
>pdb|1OED|C Chain C, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369 Back     alignment and structure
>pdb|1OED|E Chain E, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 260 Back     alignment and structure
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|2KSR|A Chain A, Nmr Structures Of Tm Domain Of The N-Acetylcholine Receptor B2 Subunit Length = 164 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370 Back     alignment and structure
>pdb|2LLY|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Nachr A4 Subunit Length = 137 Back     alignment and structure
>pdb|2LM2|A Chain A, Nmr Structures Of The Transmembrane Domains Of The Achr B2 Subunit Length = 137 Back     alignment and structure
>pdb|2LKG|A Chain A, Wsa Major Conformation Length = 140 Back     alignment and structure
>pdb|2K58|B Chain B, Nmr Structures Of The First Transmembrane Domain Of The Neuronal Acetylcholine Receptor Beta 2 Subunit Length = 35 Back     alignment and structure
>pdb|1DXZ|A Chain A, M2 Transmembrane Segment Of Alpha-Subunit Of Nicotinic Acetylcholine Receptor From Torpedo Californica, Nmr, 20 Structures Length = 33 Back     alignment and structure
>pdb|3SH1|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7 Nachr Length = 230 Back     alignment and structure
>pdb|3SQ6|A Chain A, Crystal Structures Of The Ligand Binding Domain Of A Pentameric Alpha7 Nicotinic Receptor Chimera With Its Agonist Epibatidine Length = 204 Back     alignment and structure
>pdb|3T4M|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7 Nachr (Intermediate) Length = 230 Back     alignment and structure
>pdb|2XNT|A Chain A, Acetylcholine Binding Protein (Achbp) As Template For Hierarchical In Silico Screening Procedures To Identify Structurally Novel Ligands For The Nicotinic Receptors Length = 236 Back     alignment and structure
>pdb|2XZ6|A Chain A, Mtset-Modified Y53c Mutant Of Aplysia Achbp Length = 217 Back     alignment and structure
>pdb|2XZ5|A Chain A, Mmts-Modified Y53c Mutant Of Aplysia Achbp In Complex With Acetylcholine Length = 217 Back     alignment and structure
>pdb|2BR7|A Chain A, Crystal Structure Of Acetylcholine-Binding Protein (Achbp) From Aplysia Californica In Complex With Hepes Length = 217 Back     alignment and structure
>pdb|2BYP|A Chain A, Crystal Structure Of Aplysia Californica Achbp In Complex With Alpha-Conotoxin Imi Length = 214 Back     alignment and structure
>pdb|2YME|A Chain A, Crystal Structure Of A Mutant Binding Protein (5htbp-achbp) In Complex With Granisetron Length = 205 Back     alignment and structure
>pdb|2YMD|A Chain A, Crystal Structure Of A Mutant Binding Protein (5htbp-achbp) In Complex With Serotonin (5-hydroxytryptamine) Length = 212 Back     alignment and structure
>pdb|2PGZ|A Chain A, Crystal Structure Of Cocaine Bound To An Ach-binding Protein Length = 230 Back     alignment and structure
>pdb|2BYN|A Chain A, Crystal Structure Of Apo Achbp From Aplysia Californica Length = 227 Back     alignment and structure
>pdb|3PMZ|A Chain A, Crystal Structure Of The Complex Of Acetylcholine Binding Protein And D-Tubocurarine Length = 227 Back     alignment and structure
>pdb|3GUA|A Chain A, Sulfates Bound In The Vestibule Of Achbp Length = 217 Back     alignment and structure
>pdb|2WN9|A Chain A, Crystal Structure Of Aplysia Achbp In Complex With 4-0h- Dmxba Length = 228 Back     alignment and structure
>pdb|2X00|D Chain D, Crystal Structure Of A-Achbp In Complex With Gymnodimine A Length = 227 Back     alignment and structure
>pdb|3SIO|A Chain A, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10 Linker) Mutated To Human Alpha-7 Nachr Length = 230 Back     alignment and structure
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The Nicotinic Acetylcholine Receptor 1 Subunit Bound To Alpha-Bungarotoxin At 1.9 A Resolution Length = 212 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query383
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 9e-99
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 5e-98
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 3e-97
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 2e-96
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 6e-70
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 8e-69
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 2e-68
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 4e-68
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 2e-67
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 1e-66
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 2e-65
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 7e-64
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 5e-62
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 6e-59
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 2e-57
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 2e-47
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 2e-42
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 2e-30
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 3e-23
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 8e-22
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 5e-21
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 1e-18
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 7e-17
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 1e-15
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 6e-13
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493 Back     alignment and structure
 Score =  301 bits (772), Expect = 9e-99
 Identities = 103/306 (33%), Positives = 158/306 (51%), Gaps = 11/306 (3%)

Query: 59  ERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCCDEPYLDITFNITMRRKTLFYTVNIIIP 118
           + + ++   F  + +W I   P+ +N   +   D  Y D+TF + ++RK LFY V  I+P
Sbjct: 195 KEIMINQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVP 251

Query: 119 CMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFA 178
           C+ IS L +L FYLP D+GEK++LSIS L++L VF LL+ + +P TSL VP++  YL+F 
Sbjct: 252 CILISILAILVFYLPPDAGEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFI 311

Query: 179 MILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADG 238
           MILV+ S+ ++VVVLN+H RSP TH M  W++++FI+ LP  L ++RP+  P        
Sbjct: 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 371

Query: 239 PLIGGSGGSCKI--HGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFC 296
                     +      V   +    A+       + K            P  +  +   
Sbjct: 372 ISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTLPQDLKEAVEA 431

Query: 297 VRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSL 356
           +++IAE      +         +K+DW+YVA+V DRLFL+IF      GT  I L A   
Sbjct: 432 IKYIAEQLESASEF------DDLKKDWQYVAMVADRLFLYIFITMCSIGTFSIFLDASHN 485

Query: 357 YDDRVP 362
                P
Sbjct: 486 VPPDNP 491
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522 Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461 Back     alignment and structure
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488 Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260 Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250 Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369 Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227 Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164 Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260 Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321 Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137 Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140 Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322 Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347 Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228 Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230 Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211 Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203 Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212 Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204 Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
4aq5_E488 Acetylcholine receptor gamma subunit; membrane pro 100.0
4aq5_C522 Acetylcholine receptor delta subunit; membrane pro 100.0
4aq5_A461 Acetylcholine receptor subunit alpha; membrane pro 100.0
4aq5_B493 Acetylcholine receptor beta subunit; membrane prot 100.0
2bg9_B370 Acetylcholine receptor protein, beta chain; ION ch 100.0
2bg9_C369 Acetylcholine receptor protein, delta chain; ION c 100.0
2bg9_E370 Acetylcholine receptor protein, gamma chain; ION c 100.0
2bg9_A370 Acetylcholine receptor protein, alpha chain; ION c 100.0
1oed_B250 Acetylcholine receptor protein, beta chain; ION ch 100.0
1oed_C260 Acetylcholine receptor protein, delta chain; ION c 100.0
1oed_E260 Acetylcholine receptor protein, gamma chain; ION c 100.0
1oed_A227 Acetylcholine receptor protein, alpha chain; ION c 100.0
3rqw_A322 ELIC pentameric ligand gated ION channel from ERW 100.0
3tlw_A321 GLR4197 protein, GLIC; Cys-loop receptor family, m 100.0
3rhw_A347 Avermectin-sensitive glutamate-gated chloride CHA 100.0
2ksr_A164 Neuronal acetylcholine receptor subunit beta-2; ni 100.0
2lly_A137 Neuronal acetylcholine receptor subunit alpha-4; t 99.96
2lkg_A140 Acetylcholine receptor; transmembrane domain, SIGN 99.94
4aoe_A205 Acetylcholine-binding protein type 2; ligand gated 99.74
3igq_A201 GLR4197 protein; plgic Cys-loop, membrane protein, 99.72
4aod_A205 Acetylcholine-binding protein type 1; ligand gated 99.72
2qc1_B212 Acetylcholine receptor subunit alpha; nicotinic ac 99.69
2wn9_A228 Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl 99.66
3sq6_A204 ACHBP, neuronal acetylcholine receptor subunit alp 99.66
4afh_A230 ACHBP; acetylcholine-binding protein, nicotinic re 99.64
1uw6_A211 Acetylcholine-binding protein; pentamer, IGG fold, 99.58
2bj0_A203 Acetylcholine-binding protein; 3D-structure, glyco 99.52
1vry_A76 Glycine receptor alpha-1 chain; second transmembra 98.85
1mot_A28 Glycine receptor alpha-1 chain; second transmembra 84.06
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Back     alignment and structure
Probab=100.00  E-value=5.8e-66  Score=528.23  Aligned_cols=338  Identities=29%  Similarity=0.448  Sum_probs=226.3

Q ss_pred             cCCcccCcccceeeecCCCCeEeeCCccCCeEEEecCCCCC-CccccccccccccccceEEecccCeEEeeeeeccC-CC
Q psy16242         16 HHPESFYPYHTAARSTEDLSRFKRESSRKNKDDLSPRRPPH-RRERVGVDLSEFYMSVEWDILEVPAVRNEKFYTCC-DE   93 (383)
Q Consensus        16 ~~~~~~FPfD~Q~C~l~~~~~f~s~~y~~~~v~l~~~~~~~-~~~~~~~~l~~~~~~~EW~l~~~~~~~~~~~y~~~-~~   93 (383)
                      ..|+++||||+|+|+|    +|+||+|+.+++++.|..++. ......+|.++|..+|||++.+.+++++...+.|| ++
T Consensus       128 ~mdl~~FPfD~Q~C~l----~f~S~~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~~~~~~~~~~~~~~  203 (488)
T 4aq5_E          128 PIAVTYFPFDWQNCSL----VFRSQTYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDI  203 (488)
T ss_dssp             CCSSSSSSSSCCCCCE----EEEESSSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEEECCCEEECCCCTTCCCS
T ss_pred             ccccccCCCcCceeeE----EeeeeccccceEEEEeccCCCcceeeeeccHHHccccceEEEEeeEEEEEEeeeccCCCC
Confidence            4488999999999999    999999999999999875432 11223468889999999999999988776644455 45


Q ss_pred             CcceEEEEEEeeeccceEEEEEeccchhhhhheeeEEeccCC-CCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccch
Q psy16242         94 PYLDITFNITMRRKTLFYTVNIIIPCMGISFLTVLTFYLPSD-SGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLG  172 (383)
Q Consensus        94 ~y~~i~~~~~lrR~~~~y~~~liiP~~li~~Ls~~~F~lp~~-s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~  172 (383)
                      .|++++|+|++||+++||++++++||+++++|+|++||||++ +|||++||+|+||++++|++.+++.+|++|+.+|+||
T Consensus       204 ~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~  283 (488)
T 4aq5_E          204 DFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIG  283 (488)
T ss_dssp             CCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             CcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccHHH
Confidence            799999999999999999999999999999999999999999 7999999999999999999999999999997799999


Q ss_pred             hhhhHHHhhhhheeeEEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCC--CCCCCC---
Q psy16242        173 KYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLI--GGSGGS---  247 (383)
Q Consensus       173 ~f~~~~~~~v~~sli~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~--~~~~~~---  247 (383)
                      +|+++||+++++|++++++|+|+|||++.+|+||+|+|++|++++|++|||++|..+........++..  +.....   
T Consensus       284 ~y~~~~m~lv~~Sll~tv~Vlnl~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (488)
T 4aq5_E          284 KYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPEKPQPRRRSSFGIMIKAEEY  363 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCSTTTCC------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhEEEEEccCCCCCcCChhHhhhhHhhCcceeEecCCcccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999654211110000000  000000   


Q ss_pred             --ccccCCC---cccccccccccCC--CCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhh
Q psy16242        248 --CKIHGHV---SLSNILTEAILSS--SPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVK  320 (383)
Q Consensus       248 --~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~  320 (383)
                        .+.....   ...+. .+.....  ....................++++++++++++|++|+++||++++      ++
T Consensus       364 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ia~~~~~~~~~~~------~~  436 (488)
T 4aq5_E          364 ILKKPRSELMFEEQKDR-HGLKRVNKMTSDIDIGTTVDLYKDLANFAPEIKSCVEACNFIAKSTKEQNDSGS------EN  436 (488)
T ss_dssp             ----------------------------------------------------HHHHHHHHHHHHHHHHHHHH------HH
T ss_pred             cccCCcccccccccccc-CcccccccccCccccCCCccccccccccCHHHHHHHHHHHHHHHHHhhhhHHhh------hh
Confidence              0000000   00000 0000000  000000000000001112356899999999999999999999999      99


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcCCccccCCCccc
Q psy16242        321 EDWKYVALVLDRLFLWIFTLAVLGGTAGIILQAPSLYDDRVPID  364 (383)
Q Consensus       321 ~EWk~vA~VlDRlfL~iF~l~~~v~T~~i~~~~p~~~~~~~~~~  364 (383)
                      +|||+||||+||+|||+|++++++||++||++++..+.+++|.+
T Consensus       437 ~dWk~va~V~DR~~l~~f~~~~~~gt~~i~~~~~~~~~~~~p~~  480 (488)
T 4aq5_E          437 ENWVLIGKVIDKACFWIALLLFSLGTLAIFLTGHLNQVPEFPFP  480 (488)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----
T ss_pred             hcceEEEeeHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCCC
Confidence            99999999999999999999999999999999988777666654
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Back     alignment and structure
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Back     alignment and structure
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Back     alignment and structure
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Back     alignment and structure
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Back     alignment and structure
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Back     alignment and structure
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Back     alignment and structure
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Back     alignment and structure
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A* Back     alignment and structure
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Back     alignment and structure
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Back     alignment and structure
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Back     alignment and structure
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Back     alignment and structure
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Back     alignment and structure
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata} Back     alignment and structure
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Back     alignment and structure
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata} Back     alignment and structure
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Back     alignment and structure
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Back     alignment and structure
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A* Back     alignment and structure
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A* Back     alignment and structure
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Back     alignment and structure
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Back     alignment and structure
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 383
d1oedb_250 f.36.1.1 (B:) Acetylcholine receptor protein, beta 1e-64
d1oedc_260 f.36.1.1 (C:) Acetylcholine receptor protein, delt 3e-63
d1oede_260 f.36.1.1 (E:) Acetylcholine receptor protein, gamm 7e-60
d1oeda_227 f.36.1.1 (A:) Acetylcholine receptor protein, alph 3e-56
d1uw6a_208 b.96.1.1 (A:) Acetylcholine binding protein (ACHBP 3e-15
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score =  204 bits (519), Expect = 1e-64
 Identities = 89/251 (35%), Positives = 134/251 (53%), Gaps = 8/251 (3%)

Query: 109 LFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 168
           LFY V  IIPC+ IS L +L FYLP D+GEK++LSIS L+++ VF LL+ + +P TSL V
Sbjct: 2   LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 169 PLLGKYLIFAMILVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLY 228
           P++ +YL+F MILV+ S+ ++VVVLN+H RSP TH M  W++++FI+ LP  L ++RP+ 
Sbjct: 62  PIIIRYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVT 121

Query: 229 NPDGSHLADGPLIGGSGGSCK--IHGHVSLSNILTEAILSSSPQDDSKHLRPPAFSHAQC 286
            P                  +      V   +    A+       + K            
Sbjct: 122 TPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARVAVQPERLFSEMKWHLNGLTQPVTL 181

Query: 287 PPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAVLGGT 346
           P  +  +   +++IAE      +         +K+DW+YVA+V DRLFL++F +    GT
Sbjct: 182 PQDLKEAVEAIKYIAEQLESASEFDD------LKKDWQYVAMVADRLFLYVFFVICSIGT 235

Query: 347 AGIILQAPSLY 357
             I L A    
Sbjct: 236 FSIFLDASHNV 246
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260 Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227 Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query383
d1oedb_250 Acetylcholine receptor protein, beta chain {Marble 100.0
d1oedc_260 Acetylcholine receptor protein, delta chain {Marbl 100.0
d1oede_260 Acetylcholine receptor protein, gamma chain {Marbl 100.0
d1oeda_227 Acetylcholine receptor protein, alpha chain {Marbl 100.0
d1uw6a_208 Acetylcholine binding protein (ACHBP) {Great pond 99.59
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=100.00  E-value=2.1e-48  Score=363.46  Aligned_cols=241  Identities=37%  Similarity=0.604  Sum_probs=120.3

Q ss_pred             cceEEEEEeccchhhhhheeeEEeccCCCCCeEEehhhHHHHHHHHHHHHHhhCCCCccccccchhhhhHHHhhhhheee
Q psy16242        108 TLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISIC  187 (383)
Q Consensus       108 ~~~y~~~liiP~~li~~Ls~~~F~lp~~s~eRv~l~it~lLs~~vfl~~v~~~lP~tS~~iP~i~~f~~~~~~~v~~sli  187 (383)
                      |+||++|+++||++|++++|++||+|+|+|||++||+|+||++++|++.+++.+|++|+++|+||+|+.+||+++++|++
T Consensus         1 pl~y~~~~~~P~~~i~~l~~~~f~~p~~~~er~~l~it~lL~~~~~~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~~   80 (250)
T d1oedb_           1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSVI   80 (250)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred             CcEEEEeHHHHHHHHHHHHHHHheecCCCCCcEEeeHHHHHHHHHHHHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeecccCCCCCCCCcchhhhhcccccceeeecCCCCCCCCCCCCCCCCCC----CCCCCcccc-CCCcccccccc
Q psy16242        188 VTVVVLNVHFRSPQTHKMAPWVKRVFIQFLPRILVMRRPLYNPDGSHLADGPLIG----GSGGSCKIH-GHVSLSNILTE  262 (383)
Q Consensus       188 ~tv~v~~l~~r~~~~~~~p~w~r~~~l~~l~~~l~~~~p~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~  262 (383)
                      .+++|+|+|||++..+++|+|+|++|++++|++++|++|................    ....+.... .+....+.  .
T Consensus        81 ~~~~v~~~~~~~~~~~p~P~wvR~lfL~~la~ll~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  158 (250)
T d1oedb_          81 LSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTIISRANDEYFIRKPAGDFVCPVDNARV--A  158 (250)
T ss_dssp             HHHHHHHHHHTC--------------------------------------------------------------------
T ss_pred             HHHhheeeeccCcccCCcchHHHHHHHHhhhHHhcccCCCCcccccccccccccccccccccCCCCCCCCCCCcccc--C
Confidence            9999999999999999999999999999999999999886644322111000000    000000000 00000000  0


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHhhccccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy16242        263 AILSSSPQDDSKHLRPPAFSHAQCPPVMHRSCFCVRFIAEHTRMQDDSTKESTLIMVKEDWKYVALVLDRLFLWIFTLAV  342 (383)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~I~~~~~~~d~~~~~~~~~~~~~EWk~vA~VlDRlfL~iF~l~~  342 (383)
                      ............. .+...........++++.++++++++++++++++++      +++|||++|+|+||+|||+|++++
T Consensus       159 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~v~~i~~~~~~~~~~~~------~~~EW~~vA~VlDRlfl~lF~l~~  231 (250)
T d1oedb_         159 VQPERLFSEMKWH-LNGLTQPVTLPQDLKEAVEAIKYIAEQLESASEFDD------LKKDWQYVAMVADRLFLYVFFVIC  231 (250)
T ss_dssp             ----------------------------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCC-CCCCCCcchhhhhHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000000000000 000011112235678999999999999999999999      999999999999999999999999


Q ss_pred             HhhhHhhhhcCCccc
Q psy16242        343 LGGTAGIILQAPSLY  357 (383)
Q Consensus       343 ~v~T~~i~~~~p~~~  357 (383)
                      +++|++||++||+.+
T Consensus       232 vi~t~~i~l~ap~~~  246 (250)
T d1oedb_         232 SIGTFSIFLDASHNV  246 (250)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCcccC
Confidence            999999999999764
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Back     information, alignment and structure
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Back     information, alignment and structure