Psyllid ID: psy16244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80------
Protein Sequence
MGQNRVLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKFTVWQ
Secondary Structure (PSIPRED)
ccccccccccccccccEEHHHHHHHHHHcccccEEEEEEEEEccEEEEcccEEcccccccccEEEEcccccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccccEEEEEEEHHHHEEccHHHccEcEcEEEEEEEcccEEEEcHHHccccEEEEccccHcccccEEEEccEEEEc
Coil and Loop (DISEMBL)
MGQNRVLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYdyklrwepkeyggvhmlhvpsdhiwrpdivlynkftvwq
Flexible Loop (DISEMBL)
MGQNRVLKLLQNHETLLVELRTAtllsrhnlknqimttnlwvEQSWYDYKLRWEPKEYGGVHMLHvpsdhiwrpdIVLYNKFTVWQ
Low Complexity Region (SEG)
MGQNRVLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKFTVWQ
Disordered region (IsUnstruct)
*****VLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKFTVW*
Disordered Region (DISOPRED)
MGQNRVLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKFT***
Disordered Region (DISEMBL)
MGQNRVLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKFTVWQ
Disordered Region (DISPRO)
MGQNRVLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKFTVWQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGQNRVLKLLQNHETLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKFTVWQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	86	2.2.26 [Sep-21-2011]
P91766	516	Acetylcholine receptor su	N/A	N/A	0.755	0.125	0.772	3e-24
P09478	567	Acetylcholine receptor su	no	N/A	0.883	0.134	0.587	4e-21
P25162	519	Acetylcholine receptor su	no	N/A	0.883	0.146	0.612	1e-20
Q9N587	502	Acetylcholine receptor su	yes	N/A	0.802	0.137	0.625	7e-19
P23414	557	Acetylcholine receptor su	N/A	N/A	0.883	0.136	0.55	2e-17
P17644	576	Acetylcholine receptor su	no	N/A	0.883	0.131	0.537	4e-17
Q19AE6	627	Neuronal acetylcholine re	N/A	N/A	0.569	0.078	0.673	6e-17
O70174	629	Neuronal acetylcholine re	yes	N/A	0.569	0.077	0.653	5e-16
P43681	627	Neuronal acetylcholine re	yes	N/A	0.569	0.078	0.653	5e-16
P09483	630	Neuronal acetylcholine re	yes	N/A	0.569	0.077	0.653	7e-16

>sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like OS=Manduca sexta GN=ARA1 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 58/66 (87%), Gaps = 1/66 (1%)

Query: 15  TLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRP 74
           T+ ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKL WEP+EYGGV MLHVPSDHIWRP
Sbjct: 51  TVRIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLSWEPREYGGVEMLHVPSDHIWRP 109

Query: 75  DIVLYN 80
           DIVLYN
Sbjct: 110 DIVLYN 115

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
Manduca sexta (taxid: 7130)

>sp|P09478|ACH1_DROME Acetylcholine receptor subunit alpha-like 1 OS=Drosophila melanogaster GN=nAcRalpha-96Aa PE=2 SV=2

 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/80 (58%), Positives = 60/80 (75%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHE---TLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           NR+++ + N+    T+ + LR + L+   NLKNQIMTTN+WVEQ W DYKL+W P +YGG
Sbjct: 37  NRLIRPVGNNSDRLTVKMGLRLSQLIDV-NLKNQIMTTNVWVEQEWNDYKLKWNPDDYGG 95

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           V  LHVPS+HIW PDIVLYN
Sbjct: 96  VDTLHVPSEHIWLPDIVLYN 115

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|P25162|ACH4_DROME Acetylcholine receptor subunit beta-like 2 OS=Drosophila melanogaster GN=nAcRbeta-96A PE=2 SV=3

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 64/80 (80%), Gaps = 4/80 (5%)

Query: 4   NRVLK-LLQNHETLLV--ELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           NR+++ ++ N ETL V   L+ + L+   NLKNQ+MTTNLWV+Q W+DYKLRW+P+EYGG
Sbjct: 42  NRLIRPVVNNTETLTVWLGLKLSQLI-EVNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGG 100

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           V  L+VPS+HIW PDIVLYN
Sbjct: 101 VEQLYVPSEHIWVPDIVLYN 120

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q9N587|ACH6_CAEEL Acetylcholine receptor subunit alpha-type unc-63 OS=Caenorhabditis elegans GN=unc-63 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 45/72 (62%), Positives = 57/72 (79%), Gaps = 3/72 (4%)

Query: 11  QNHETLLV--ELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPS 68
           +N ETL+V  +L+ + LL  H  KNQIMTTN+W++ SW DYKLRW+P EYGGV +L+VPS
Sbjct: 47  ENGETLVVTFKLKLSQLLDVHE-KNQIMTTNVWLQHSWMDYKLRWDPVEYGGVEVLYVPS 105

Query: 69  DHIWRPDIVLYN 80
           D IW PD+VLYN
Sbjct: 106 DTIWLPDVVLYN 117

Acetylcholine receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|P23414|ACH1_SCHGR Acetylcholine receptor subunit alpha-L1 OS=Schistocerca gregaria PE=2 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 62/80 (77%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNH-ETLLVEL--RTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           NR+++ + N+ +T+LV+L  R + L+   NLK+QI+TTN+W+E  W D+K RW+P EYGG
Sbjct: 39  NRLIRPVSNNTDTVLVKLGLRLSQLIDL-NLKDQILTTNVWLEHEWQDHKFRWDPAEYGG 97

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           V  L+VPS+HIW PDIVLYN
Sbjct: 98  VTELYVPSEHIWLPDIVLYN 117

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Schistocerca gregaria (taxid: 7010)

>sp|P17644|ACH2_DROME Acetylcholine receptor subunit alpha-like 2 OS=Drosophila melanogaster GN=nAcRalpha-96Ab PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 62/80 (77%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNH-ETLLVEL--RTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           NR+++ + N+ +T+LV+L  R + L+   NLK+QI+TTN+W+E  W D+K +W+P EYGG
Sbjct: 57  NRLIRPVSNNTDTVLVKLGLRLSQLIDL-NLKDQILTTNVWLEHEWQDHKFKWDPSEYGG 115

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           V  L+VPS+HIW PDIVLYN
Sbjct: 116 VTELYVPSEHIWLPDIVLYN 135

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q19AE6|ACHA4_MUSPF Neuronal acetylcholine receptor subunit alpha-4 OS=Mustela putorius furo GN=CHRNA4 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 41/49 (83%)

Query: 32  KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
           KNQ+MTTN+WV+Q WYDYKLRW+P +Y  V  + +PS+ IWRPDIVLYN
Sbjct: 81  KNQMMTTNVWVKQEWYDYKLRWDPADYENVTSIRIPSELIWRPDIVLYN 129

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Mustela putorius furo (taxid: 9669)

>sp|O70174|ACHA4_MOUSE Neuronal acetylcholine receptor subunit alpha-4 OS=Mus musculus GN=Chrna4 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 41/49 (83%)

Query: 32  KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
           KNQ+MTTN+WV+Q W+DYKLRW+P +Y  V  + +PS+ IWRPDIVLYN
Sbjct: 81  KNQMMTTNVWVKQEWHDYKLRWDPGDYENVTSIRIPSELIWRPDIVLYN 129

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Mus musculus (taxid: 10090)

>sp|P43681|ACHA4_HUMAN Neuronal acetylcholine receptor subunit alpha-4 OS=Homo sapiens GN=CHRNA4 PE=1 SV=2

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 41/49 (83%)

Query: 32  KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
           KNQ+MTTN+WV+Q W+DYKLRW+P +Y  V  + +PS+ IWRPDIVLYN
Sbjct: 79  KNQMMTTNVWVKQEWHDYKLRWDPADYENVTSIRIPSELIWRPDIVLYN 127

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Homo sapiens (taxid: 9606)

>sp|P09483|ACHA4_RAT Neuronal acetylcholine receptor subunit alpha-4 OS=Rattus norvegicus GN=Chrna4 PE=1 SV=3

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 41/49 (83%)

Query: 32  KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
           KNQ+MTTN+WV+Q W+DYKLRW+P +Y  V  + +PS+ IWRPDIVLYN
Sbjct: 81  KNQMMTTNVWVKQEWHDYKLRWDPGDYENVTSIRIPSELIWRPDIVLYN 129

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
221513709	539	nicotinic acetylcholine receptor alpha 8	0.883	0.141	0.7	4e-26
442634276	499	nicotinic acetylcholine receptor alpha 8	0.883	0.152	0.7	4e-26
7258392	568	nicotinic acetylcholine receptor Dalpha	0.883	0.133	0.7	4e-26
267925056	577	nicotinic acetylcholine receptor subunit	0.883	0.131	0.7	5e-26
158186744	569	nicotinic acetylcholine receptor subunit	0.883	0.133	0.7	5e-26
290560640	569	nicotinic acetylcholine receptor subunit	0.883	0.133	0.7	5e-26
350536205	577	nicotinic acetylcholine receptor alpha 4	0.883	0.131	0.7	6e-26
195446115	564	GK12171 [Drosophila willistoni] gi|19416	0.883	0.134	0.7	8e-26
383847485	569	PREDICTED: acetylcholine receptor subuni	0.883	0.133	0.7	9e-26
380018139	569	PREDICTED: acetylcholine receptor subuni	0.883	0.133	0.7	9e-26

>gi|221513709|ref|NP_001097669.2| nicotinic acetylcholine receptor alpha 80B, isoform C [Drosophila melanogaster] gi|220902701|gb|ABW08585.2| nicotinic acetylcholine receptor alpha 80B, isoform C [Drosophila melanogaster]

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 24  NKLVRPVVNTTDVLKVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 82

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 83  VHMLHVPSDHIWRPDIVLYN 102

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442634276|ref|NP_001262234.1| nicotinic acetylcholine receptor alpha 80B, isoform G [Drosophila melanogaster] gi|440216215|gb|AGB94927.1| nicotinic acetylcholine receptor alpha 80B, isoform G [Drosophila melanogaster]

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 24  NKLVRPVVNTTDVLKVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 82

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 83  VHMLHVPSDHIWRPDIVLYN 102

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|7258392|emb|CAB77445.1| nicotinic acetylcholine receptor Dalpha 4 subunit [Drosophila melanogaster]

 Score =  121 bits (304), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 53  NKLVRPVVNTTDVLKVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 111

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 112 VHMLHVPSDHIWRPDIVLYN 131

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|267925056|gb|ACY82686.1| nicotinic acetylcholine receptor subunit alpha 4 [Nasonia vitripennis]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 41  NKLVRPVVNTSDVLRVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 99

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 100 VHMLHVPSDHIWRPDIVLYN 119

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158186744|ref|NP_001103389.1| nicotinic acetylcholine receptor subunit alpha 4 isoform 1 precursor [Bombyx mori] gi|157367291|gb|ABV45514.1| nicotinic acetylcholine receptor subunit alpha 4 transcript variant 1 [Bombyx mori]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 36  NKLVRPVVNTTDVLRVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 94

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 95  VHMLHVPSDHIWRPDIVLYN 114

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290560640|ref|NP_001166816.1| nicotinic acetylcholine receptor subunit alpha 4 isoform 2 precursor [Bombyx mori] gi|157367293|gb|ABV45515.1| nicotinic acetylcholine receptor subunit alpha 4 transcript variant 2 [Bombyx mori] gi|157783830|gb|ABV72686.1| nicotinic acetylcholine receptor alpha 4 subunit [Bombyx mori]

 Score =  121 bits (303), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 36  NKLVRPVVNTTDVLRVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 94

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 95  VHMLHVPSDHIWRPDIVLYN 114

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350536205|ref|NP_001234904.1| nicotinic acetylcholine receptor alpha 4 subunit precursor [Nasonia vitripennis] gi|267925083|gb|ACY82687.1| nicotinic acetylcholine receptor subunit alpha 4' [Nasonia vitripennis]

 Score =  121 bits (303), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 41  NKLVRPVVNTSDVLRVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 99

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 100 VHMLHVPSDHIWRPDIVLYN 119

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446115|ref|XP_002070634.1| GK12171 [Drosophila willistoni] gi|194166719|gb|EDW81620.1| GK12171 [Drosophila willistoni]

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 53  NKLVRPVVNTTDVLKVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 111

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 112 VHMLHVPSDHIWRPDIVLYN 131

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847485|ref|XP_003699383.1| PREDICTED: acetylcholine receptor subunit alpha-like isoform 1 [Megachile rotundata]

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 41  NKLVRPVVNTSDVLRVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 99

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 100 VHMLHVPSDHIWRPDIVLYN 119

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018139|ref|XP_003692993.1| PREDICTED: acetylcholine receptor subunit alpha-like isoform 1 [Apis florea]

 Score =  120 bits (302), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/80 (70%), Positives = 67/80 (83%), Gaps = 4/80 (5%)

Query: 4   NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct: 41  NKLVRPVVNTSDVLRVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 99

Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           VHMLHVPSDHIWRPDIVLYN
Sbjct: 100 VHMLHVPSDHIWRPDIVLYN 119

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	86
FB|FBgn0037212	568	nAcRalpha-80B "nicotinic Acety	0.883	0.133	0.7	3.5e-26
FB|FBgn0015519	795	nAcRalpha-7E "nicotinic Acetyl	0.755	0.081	0.787	7.9e-25
FB|FBgn0004118	519	nAcRbeta-96A "nicotinic Acetyl	0.918	0.152	0.604	6.2e-22
FB|FBgn0000036	567	nAcRalpha-96Aa "nicotinic Acet	0.883	0.134	0.587	2.1e-20
WB|WBGene00006797	502	unc-63 [Caenorhabditis elegans	0.883	0.151	0.575	4.1e-20
FB|FBgn0000039	576	nAcRalpha-96Ab "nicotinic Acet	0.883	0.131	0.537	1.2e-18
UNIPROTKB|H0YBH1	137	CHRNA4 "Neuronal acetylcholine	0.906	0.569	0.487	3.7e-16
UNIPROTKB|F1NKI5	325	CHRNA6 "Neuronal acetylcholine	0.895	0.236	0.468	5.8e-16
UNIPROTKB|F1NWX4	470	CHRNB4 "Neuronal acetylcholine	0.883	0.161	0.475	8e-16
UNIPROTKB|P26153	470	CHRNB4 "Neuronal acetylcholine	0.883	0.161	0.475	8e-16

FB|FBgn0037212 nAcRalpha-80B "nicotinic Acetylcholine Receptor alpha 80B" [Drosophila melanogaster (taxid:7227)]

 Score = 302 (111.4 bits), Expect = 3.5e-26, P = 3.5e-26
 Identities = 56/80 (70%), Positives = 67/80 (83%)

Query:     4 NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
             N++++ + N   +L   ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG
Sbjct:    53 NKLVRPVVNTTDVLKVCIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 111

Query:    61 VHMLHVPSDHIWRPDIVLYN 80
             VHMLHVPSDHIWRPDIVLYN
Sbjct:   112 VHMLHVPSDHIWRPDIVLYN 131

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0015519 nAcRalpha-7E "nicotinic Acetylcholine Receptor alpha 7E" [Drosophila melanogaster (taxid:7227)]

 Score = 293 (108.2 bits), Expect = 7.9e-25, P = 7.9e-25
 Identities = 52/66 (78%), Positives = 59/66 (89%)

Query:    15 TLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRP 74
             T+ ++L+ + L+   NLKNQIMTTNLWVEQSWYDYKL+WEPKEYGGV MLHVPSDHIWRP
Sbjct:    52 TVRIKLKLSQLIDV-NLKNQIMTTNLWVEQSWYDYKLKWEPKEYGGVEMLHVPSDHIWRP 110

Query:    75 DIVLYN 80
             DIVLYN
Sbjct:   111 DIVLYN 116

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0004118 nAcRbeta-96A "nicotinic Acetylcholine Receptor beta 96A" [Drosophila melanogaster (taxid:7227)]

 Score = 262 (97.3 bits), Expect = 6.2e-22, P = 6.2e-22
 Identities = 49/81 (60%), Positives = 63/81 (77%)

Query:     4 NRVLK-LLQNHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGV 61
             NR+++ ++ N ETL V L    + L   NLKNQ+MTTNLWV+Q W+DYKLRW+P+EYGGV
Sbjct:    42 NRLIRPVVNNTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGGV 101

Query:    62 HMLHVPSDHIWRPDIVLYNKF 82
               L+VPS+HIW PDIVLYN +
Sbjct:   102 EQLYVPSEHIWVPDIVLYNNW 122

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0000036 nAcRalpha-96Aa "nicotinic Acetylcholine Receptor alpha 96Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 249 (92.7 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 47/80 (58%), Positives = 60/80 (75%)

Query:     4 NRVLKLLQNHE---TLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
             NR+++ + N+    T+ + LR + L+   NLKNQIMTTN+WVEQ W DYKL+W P +YGG
Sbjct:    37 NRLIRPVGNNSDRLTVKMGLRLSQLIDV-NLKNQIMTTNVWVEQEWNDYKLKWNPDDYGG 95

Query:    61 VHMLHVPSDHIWRPDIVLYN 80
             V  LHVPS+HIW PDIVLYN
Sbjct:    96 VDTLHVPSEHIWLPDIVLYN 115

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA;ISS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00006797 unc-63 [Caenorhabditis elegans (taxid:6239)]

 Score = 245 (91.3 bits), Expect = 4.1e-20, P = 4.1e-20
 Identities = 46/80 (57%), Positives = 63/80 (78%)

Query:     4 NRVLK-LLQNHETLLV--ELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
             N++++ + +N ETL+V  +L+ + LL  H  KNQIMTTN+W++ SW DYKLRW+P EYGG
Sbjct:    39 NKLVRPVSENGETLVVTFKLKLSQLLDVHE-KNQIMTTNVWLQHSWMDYKLRWDPVEYGG 97

Query:    61 VHMLHVPSDHIWRPDIVLYN 80
             V +L+VPSD IW PD+VLYN
Sbjct:    98 VEVLYVPSDTIWLPDVVLYN 117

GO:0045211 "postsynaptic membrane" evidence=IEA;IDA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0006581 "acetylcholine catabolic process" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0040012 "regulation of locomotion" evidence=IMP

GO:0034220 "ion transmembrane transport" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=ISS;IMP

GO:0022848 "acetylcholine-gated cation channel activity" evidence=IMP

GO:0007271 "synaptic transmission, cholinergic" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0000039 nAcRalpha-96Ab "nicotinic Acetylcholine Receptor alpha 96Ab" [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 43/80 (53%), Positives = 62/80 (77%)

Query:     4 NRVLKLLQNH-ETLLVEL--RTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
             NR+++ + N+ +T+LV+L  R + L+   NLK+QI+TTN+W+E  W D+K +W+P EYGG
Sbjct:    57 NRLIRPVSNNTDTVLVKLGLRLSQLIDL-NLKDQILTTNVWLEHEWQDHKFKWDPSEYGG 115

Query:    61 VHMLHVPSDHIWRPDIVLYN 80
             V  L+VPS+HIW PDIVLYN
Sbjct:   116 VTELYVPSEHIWLPDIVLYN 135

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

UNIPROTKB|H0YBH1 CHRNA4 "Neuronal acetylcholine receptor subunit alpha-4" [Homo sapiens (taxid:9606)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 40/82 (48%), Positives = 55/82 (67%)

Query:     2 GQNRVLKLLQN-HETLLVE--LRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEY 58
             G N+  + + N  + +LV   L  A L+     KNQ+MTTN+WV+Q W+DYKLRW+P +Y
Sbjct:    22 GYNKWSRPVANISDVVLVRFGLSIAQLIDVDE-KNQMMTTNVWVKQEWHDYKLRWDPADY 80

Query:    59 GGVHMLHVPSDHIWRPDIVLYN 80
               V  + +PS+ IWRPDIVLYN
Sbjct:    81 ENVTSIRIPSELIWRPDIVLYN 102

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1NKI5 CHRNA6 "Neuronal acetylcholine receptor subunit alpha-6" [Gallus gallus (taxid:9031)]

 Score = 201 (75.8 bits), Expect = 5.8e-16, P = 5.8e-16
 Identities = 37/79 (46%), Positives = 53/79 (67%)

Query:     4 NRVLKLLQN-HETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGV 61
             N+ ++ ++N  + + V    A T L+  +  NQIM TNLW+   W DYKLRW+P+EY G+
Sbjct:    15 NQFIRPVENVSDPVTVHFELAITQLTNVDEVNQIMETNLWLRHIWNDYKLRWDPREYDGI 74

Query:    62 HMLHVPSDHIWRPDIVLYN 80
               + VP+D IW+PDIVLYN
Sbjct:    75 EFVRVPADKIWKPDIVLYN 93

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005892 "acetylcholine-gated channel complex" evidence=IEA

GO:0014059 "regulation of dopamine secretion" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

UNIPROTKB|F1NWX4 CHRNB4 "Neuronal acetylcholine receptor subunit beta-4" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query:     4 NRVLKLLQNHETLL-VELRT--ATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
             N++++   N   L+ +EL+   A L+S  N + QIMTTN+W+ Q W DY+L W+P +Y G
Sbjct:    21 NKLIRPAVNSSQLVSIELQVSLAQLISV-NEREQIMTTNVWLNQEWIDYRLAWKPSDYEG 79

Query:    61 VHMLHVPSDHIWRPDIVLYN 80
             ++ML +P+ HIW PDIVLYN
Sbjct:    80 INMLRIPAKHIWLPDIVLYN 99

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|P26153 CHRNB4 "Neuronal acetylcholine receptor subunit beta-4" [Gallus gallus (taxid:9031)]

 Score = 205 (77.2 bits), Expect = 8.0e-16, P = 8.0e-16
 Identities = 38/80 (47%), Positives = 56/80 (70%)

Query:     4 NRVLKLLQNHETLL-VELRT--ATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
             N++++   N   L+ +EL+   A L+S  N + QIMTTN+W+ Q W DY+L W+P +Y G
Sbjct:    21 NKLIRPAVNSSQLVSIELQVSLAQLISV-NEREQIMTTNVWLNQEWIDYRLAWKPSDYEG 79

Query:    61 VHMLHVPSDHIWRPDIVLYN 80
             ++ML +P+ HIW PDIVLYN
Sbjct:    80 INMLRIPAKHIWLPDIVLYN 99

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09483	ACHA4_RAT	No assigned EC number	0.6530	0.5697	0.0777	yes	N/A
P09482	ACHA4_CHICK	No assigned EC number	0.6734	0.5697	0.0787	yes	N/A
Q5IS77	ACHA4_PANTR	No assigned EC number	0.6530	0.5697	0.0781	yes	N/A
Q9N587	ACH6_CAEEL	No assigned EC number	0.625	0.8023	0.1374	yes	N/A
O70174	ACHA4_MOUSE	No assigned EC number	0.6530	0.5697	0.0779	yes	N/A
P43681	ACHA4_HUMAN	No assigned EC number	0.6530	0.5697	0.0781	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	86
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	1e-22
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	1e-14

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score = 86.1 bits (214), Expect = 1e-22
 Identities = 30/52 (57%), Positives = 41/52 (78%)

Query: 30 NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNK 81
          + KNQ +TTN+W+ Q W D +L W+P++YGG+  L +PSD IW+PDIVLYNK
Sbjct: 41 DEKNQDLTTNVWLRQQWTDERLAWDPEDYGGITSLRLPSDKIWKPDIVLYNK 92

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 25/49 (51%), Positives = 32/49 (65%)

Query: 32  KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
           KN   TTN+W+ Q W D +L+W P+EY GV ++  P D IW PDI  YN
Sbjct: 72  KNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDDSIWVPDIFFYN 120

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	86
TIGR00860	459	LIC Cation transporter family protein. selective w	99.93
KOG3646|consensus	486		99.93
KOG3645|consensus	449		99.92
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	99.89
KOG3643|consensus	459		99.72
KOG3642|consensus	466		99.56
KOG3644|consensus	457		99.54

>TIGR00860 LIC Cation transporter family protein

Probab=99.93  E-value=1.3e-26  Score=166.09  Aligned_cols=85  Identities=31%  Similarity=0.610  Sum_probs=81.2

Q ss_pred             CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      ++||+.+||+.++++++|.++ .+.+|+++||++|++++++|++++|+|+||+|||++|+|++.+.++.++||+||++++
T Consensus        40 ~~Yd~~~RPv~~~~~v~V~~~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~~~~IW~PDi~l~  119 (459)
T TIGR00860        40 KNYDARVRPVFGGPPVTVSFNLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTPDDSIWVPDIFFY  119 (459)
T ss_pred             hcCCCCcCCCCCCCCEEEEEEEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceeccccccccccCcEEee
Confidence            489999999944899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcC
Q psy16244         80 NKFTVW   85 (86)
Q Consensus        80 ns~d~~   85 (86)
                      |++++.
T Consensus       120 N~~~~~  125 (459)
T TIGR00860       120 NEKDAR  125 (459)
T ss_pred             cCcccc
Confidence            999864

selective while glycine receptors are anion selective).

>KOG3646|consensus

Probab=99.93  E-value=8.2e-27  Score=164.73  Aligned_cols=86  Identities=35%  Similarity=0.713  Sum_probs=82.7

Q ss_pred             CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244          1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL   78 (86)
Q Consensus         1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i   78 (86)
                      .|||+.-||+.| ++|++|.++ .|+||+++|||+|.+++++|+.++|+|-+|+|+|++|+||+.+.++.++||+||+.+
T Consensus        36 ~nYn~leRPV~N~Sepl~V~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dvR~p~~~iWkPDVLL  115 (486)
T KOG3646|consen   36 ENYNPLERPVANESEPLQVKLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDIRFPGGNIWKPDVLL  115 (486)
T ss_pred             hhcCccCCCccccCcCEEEEeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceeeccCCccccCCceec
Confidence            489999999999 899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcCC
Q psy16244         79 YNKFTVWQ   86 (86)
Q Consensus        79 ~ns~d~~~   86 (86)
                      |||+|.=|
T Consensus       116 YNSade~F  123 (486)
T KOG3646|consen  116 YNSADEQF  123 (486)
T ss_pred             cccccccC
Confidence            99998643

>KOG3645|consensus

Probab=99.92  E-value=6.8e-26  Score=162.03  Aligned_cols=83  Identities=41%  Similarity=0.814  Sum_probs=80.1

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +|++.+||+.+ +.+++|.++ .+.+|++|||++|.+++++|+.+.|+|+||+|||++|+||+.+.++.++||+||+.++
T Consensus        40 ~Y~~~vrPv~~~~~~v~V~~~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp~~~IW~Pdi~l~  119 (449)
T KOG3645|consen   40 KYNKLVRPVKNSSDPVTVNFGLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRVPSSKIWLPDIVLY  119 (449)
T ss_pred             cccccCCccCCCCCcEEEEEEEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEecHHHcCcCcEEEE
Confidence            69999999988 779999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCc
Q psy16244         80 NKFTV   84 (86)
Q Consensus        80 ns~d~   84 (86)
                      |++++
T Consensus       120 N~~~~  124 (449)
T KOG3645|consen  120 NNADG  124 (449)
T ss_pred             ecccc
Confidence            98765

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.89  E-value=1e-23  Score=137.34  Aligned_cols=83  Identities=27%  Similarity=0.623  Sum_probs=70.6

Q ss_pred             CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244          1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL   78 (86)
Q Consensus         1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i   78 (86)
                      .+||+.+||..+ +.++.|.++ .+.+|.+++|.++++++.+++.+.|+|+||+|+|++|+|++.+.++.+.||+|++++
T Consensus        10 ~~Yd~~~rP~~~~~~~~~V~v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~~~~iW~P~l~~   89 (217)
T PF02931_consen   10 DNYDKRVRPVKNEGDPTNVSVSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVPSSQIWTPDLYF   89 (217)
T ss_dssp             HTS-STS-SSSSSSS-EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEEGGGS----EEE
T ss_pred             hcCCCCCCCCCCCCCeEEEEEEEEHhheeccccccchhhhhhhhceeccccccccChhhccCcccccccccceEeccccc
Confidence            379999999855 899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCC
Q psy16244         79 YNKFT   83 (86)
Q Consensus        79 ~ns~d   83 (86)
                      +|+.+
T Consensus        90 ~n~~~   94 (217)
T PF02931_consen   90 YNSVS   94 (217)
T ss_dssp             TTBSS
T ss_pred             ccccc
Confidence            99654

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>KOG3643|consensus

Probab=99.72  E-value=1.8e-18  Score=122.16  Aligned_cols=83  Identities=18%  Similarity=0.283  Sum_probs=76.0

Q ss_pred             CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeC---CCCcccCCE
Q psy16244          1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVP---SDHIWRPDI   76 (86)
Q Consensus         1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~---~~~iW~Pdi   76 (86)
                      +|||.++||..+|+|+.|.+. .+.+|-.|.|.+|.+++.++++|.|+|+||+|+   ..++..+.+.   .+++|+||.
T Consensus        44 ~~yd~~lRP~fGG~pv~Vgi~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~---~~~~~slTl~~~~~~~LWvPDT  120 (459)
T KOG3643|consen   44 NGYDYRLRPNFGGPPVDVGITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYS---SKNIDSLTLDVRYVDKLWVPDT  120 (459)
T ss_pred             hcCceecCCCCCCCCeEEEEEEEEeeechhccccchhhhhhhhhhhhcCcccccC---CCCCceEEEchhhhhccccCce
Confidence            489999999999999999999 999999999999999999999999999999998   4566777775   689999999


Q ss_pred             EEEecCCcCC
Q psy16244         77 VLYNKFTVWQ   86 (86)
Q Consensus        77 ~i~ns~d~~~   86 (86)
                      ++.|+..++|
T Consensus       121 ff~N~KkSf~  130 (459)
T KOG3643|consen  121 FFPNSKKSFF  130 (459)
T ss_pred             ecccCccccc
Confidence            9999988765

>KOG3642|consensus

Probab=99.56  E-value=1.8e-15  Score=107.55  Aligned_cols=83  Identities=17%  Similarity=0.246  Sum_probs=71.5

Q ss_pred             CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +|||+++||..++.|+.|++. ++..+..|.+.+++++++++++|+|.|+||.++... ..+.-..+..++||+||.++.
T Consensus        53 ~~YD~~lRP~~g~~pt~v~~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~-~~L~Ln~~m~~kiW~PDTfF~  131 (466)
T KOG3642|consen   53 RGYDNKLRPDIGSKPTEVETDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQ-EALPLNSLMLSKIWIPDTFFR  131 (466)
T ss_pred             HhhhcccCCCCCCCCcEEEEEEEEeecccccccCceEEEEEEEEEeehhhhhcccCcc-hhhccchhhhcCcccCCcccc
Confidence            489999999999999999999 999999999999999999999999999999998221 223333334799999999999


Q ss_pred             ecCCc
Q psy16244         80 NKFTV   84 (86)
Q Consensus        80 ns~d~   84 (86)
                      |+.++
T Consensus       132 NgkkS  136 (466)
T KOG3642|consen  132 NGKKS  136 (466)
T ss_pred             cCccc
Confidence            99865

>KOG3644|consensus

Probab=99.54  E-value=1.5e-14  Score=104.01  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=70.8

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeec-CC-CCCCeeEEeeC-CCCcccCCE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWE-PK-EYGGVHMLHVP-SDHIWRPDI   76 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~-p~-~~~~i~~~~~~-~~~iW~Pdi   76 (86)
                      +||++.||..+ +.|+.|.+. ++..|.+++|.++.+++++++++.|.|+||+.+ .+ ++.......+. .++||.||+
T Consensus        51 ~Yd~~~~P~~~~~~pv~V~v~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~  130 (457)
T KOG3644|consen   51 NYDKRRPPNGKGGGPVSVSVEITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDT  130 (457)
T ss_pred             cCccccCCCccCCCceEEEEEEEEEeecceecccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCce
Confidence            39999999887 799999999 999999999999999999999999999999988 34 33333333332 267999999


Q ss_pred             EEEecCCcCC
Q psy16244         77 VLYNKFTVWQ   86 (86)
Q Consensus        77 ~i~ns~d~~~   86 (86)
                      ++.|+..+.+
T Consensus       131 ~F~NsK~a~~  140 (457)
T KOG3644|consen  131 FFANSKSAEF  140 (457)
T ss_pred             eeecccceee
Confidence            9999987753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	86
2qc1_B	212	Crystal Structure Of The Extracellular Domain Of Th		2e-14
4aq5_A	461	Gating Movement In Acetylcholine Receptor Analysed		8e-12
2bg9_A	370	Refined Structure Of The Nicotinic Acetylcholine Re		1e-11
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		3e-11
2bg9_B	370	Refined Structure Of The Nicotinic Acetylcholine Re		4e-11
2bg9_E	370	Refined Structure Of The Nicotinic Acetylcholine Re		1e-10
4aq5_E	488	Gating Movement In Acetylcholine Receptor Analysed		3e-10
2bg9_C	369	Refined Structure Of The Nicotinic Acetylcholine Re		1e-07
4aq5_C	522	Gating Movement In Acetylcholine Receptor Analysed		1e-07
3sq6_A	204	Crystal Structures Of The Ligand Binding Domain Of		5e-07
4afg_A	230	Capitella Teleta Achbp In Complex With Varenicline		1e-04
3sio_A	230	Ac-Achbp Ligand Binding Domain (Not Including Beta		5e-04
3sh1_A	230	Ac-Achbp Ligand Binding Domain Mutated To Human Alp		5e-04

>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The Nicotinic Acetylcholine Receptor 1 Subunit Bound To Alpha-Bungarotoxin At 1.9 A Resolution Length = 212

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 56/80 (70%), Gaps = 4/80 (5%)
Query: 4  NRVLKLLQNHETLL---VELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
          + V++ +++H  ++   V L+   L++   + NQI+TTN+ ++Q W DY L+W P +YGG
Sbjct: 17 SSVVRPVEDHREIVQVTVGLQLIQLINVDEV-NQIVTTNVRLKQQWVDYNLKWNPDDYGG 75
Query: 61 VHMLHVPSDHIWRPDIVLYN 80
          V  +H+PS+ IWRPD+VLYN
Sbjct: 76 VKKIHIPSEKIWRPDVVLYN 95

>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 4   NRVLKLLQNHE---TLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
           N+V++ +++H     + V L+   L++   + NQI+ TN+ + Q W D +LRW P +YGG
Sbjct: 40  NKVIRPVEHHTHFVDITVGLQLIQLINVDEV-NQIVETNVRLRQQWIDVRLRWNPADYGG 98
Query: 61  VHMLHVPSDHIWRPDIVLYN 80
           +  + +PSD +W PD+VLYN
Sbjct: 99  IKKIRLPSDDVWLPDLVLYN 118

>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 4  NRVLKLLQNHE---TLLVELRTATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGG 60
          N+V++ +++H     + V L+   L++   + NQI+ TN+ + Q W D +LRW P +YGG
Sbjct: 16 NKVIRPVEHHTHFVDITVGLQLIQLINVDEV-NQIVETNVRLRQQWIDVRLRWNPADYGG 74
Query: 61 VHMLHVPSDHIWRPDIVLYN 80
          +  + +PSD +W PD+VLYN
Sbjct: 75 IKKIRLPSDDVWLPDLVLYN 94

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 22  TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
           T T L   N KN+ MTT++++  +W DY+L+W+P  Y G+  L +PSD +W+PDIVL N
Sbjct: 60  TLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMN 118

>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 22 TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
          T T L   N KN+ MTT++++  +W DY+L+W+P  Y G+  L +PSD +W+PDIVL N
Sbjct: 36 TLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLMN 94

>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 22 TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
          T T L   N K + +TTN+W+E  W DY+L W   EY G+ ++ +PS+ +W PD+VL N
Sbjct: 35 TLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLEN 93

>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 22 TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
          T T L   N K + +TTN+W+E  W DY+L W   EY G+ ++ +PS+ +W PD+VL N
Sbjct: 35 TLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLEN 93

>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 12 NHETLLVELRTATLLSRHNLK--NQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSD 69
          N+E + + L + TL +  +LK  ++ +TTN+W++ +WYD++L W   EY  + +L +  +
Sbjct: 27 NNEVVNIAL-SLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE 85
Query: 70 HIWRPDIVLYN 80
           IW PDIVL N
Sbjct: 86 LIWIPDIVLQN 96

>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 12  NHETLLVELRTATLLSRHNLK--NQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSD 69
           N+E + + L + TL +  +LK  ++ +TTN+W++ +WYD++L W   EY  + +L +  +
Sbjct: 48  NNEVVNIAL-SLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPE 106
Query: 70  HIWRPDIVLYN 80
            IW PDIVL N
Sbjct: 107 LIWIPDIVLQN 117

>pdb|3SQ6|A Chain A, Crystal Structures Of The Ligand Binding Domain Of A Pentameric Alpha7 Nicotinic Receptor Chimera With Its Agonist Epibatidine Length = 204

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 32 KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKFT 83
          KNQ++    W++ SW D+ L+W   EY GV  + VP   +W PD+  YN  +
Sbjct: 44 KNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAYNAIS 95

>pdb|4AFG|A Chain A, Capitella Teleta Achbp In Complex With Varenicline Length = 230

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 33  NQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNK 81
           N I T    V+ SW D  LRW+P+       + +  D IW PDI L+N 
Sbjct: 56  NSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFNS 104

>pdb|3SIO|A Chain A, Ac-Achbp Ligand Binding Domain (Not Including Beta 9-10 Linker) Mutated To Human Alpha-7 Nachr Length = 230

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 41  WVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNK 81
           W +QSW    L W+P EYG +      +  IW PDI  Y+ 
Sbjct: 64  WEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSS 104

>pdb|3SH1|A Chain A, Ac-Achbp Ligand Binding Domain Mutated To Human Alpha-7 Nachr Length = 230

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 41  WVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNK 81
           W +QSW    L W+P EYG +      +  IW PDI  Y+ 
Sbjct: 64  WEQQSWKLNSLMWDPNEYGNITDFRTSAADIWTPDITAYSS 104

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	86
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	6e-25
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	5e-24
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	7e-24
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	9e-24
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	2e-23
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	2e-23
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	6e-23
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	2e-21
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	2e-21
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	1e-20
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	2e-20
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	3e-20
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	4e-20
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	6e-20
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	7e-19
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	6e-17
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	9e-16
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	1e-15

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212

 Score = 91.3 bits (227), Expect = 6e-25
 Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 1/70 (1%)

Query: 12 NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
          + E + V +      L   +  NQI+TTN+ ++Q W DY L+W P +YGGV  +H+PS+ 
Sbjct: 26 HREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEK 85

Query: 71 IWRPDIVLYN 80
          IWRPD+VLYN
Sbjct: 86 IWRPDVVLYN 95

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 91.9 bits (228), Expect = 5e-24
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 12 NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
            + + V +    T L   N KN+ MTT++++  +W DY+L+W+P  Y G+  L +PSD 
Sbjct: 25 VGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDD 84

Query: 71 IWRPDIVLYN 80
          +W+PDIVL N
Sbjct: 85 VWQPDIVLMN 94

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204

 Score = 88.3 bits (219), Expect = 7e-24
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 11 QNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSD 69
          Q    + V    +   +   + KNQ++    W++ SW D+ L+W   EY GV  + VP  
Sbjct: 22 QRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPIS 81

Query: 70 HIWRPDIVLYNK 81
           +W PD+  YN 
Sbjct: 82 SLWVPDLAAYNA 93

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 91.1 bits (226), Expect = 9e-24
 Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 12 NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
          N+E + + L  T + L      ++ +TTN+W++ +WYD++L W   EY  + +L +  + 
Sbjct: 27 NNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPEL 86

Query: 71 IWRPDIVLYN 80
          IW PDIVL N
Sbjct: 87 IWIPDIVLQN 96

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 90.3 bits (224), Expect = 2e-23
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 12 NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
          +   + + +      L   +  NQI+ TN+ + Q W D +LRW P +YGG+  + +PSD 
Sbjct: 25 HTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDD 84

Query: 71 IWRPDIVLYN 80
          +W PD+VLYN
Sbjct: 85 VWLPDLVLYN 94

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228

 Score = 88.0 bits (218), Expect = 2e-23
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 12  NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
             + L V L  T   + + +     +    + +Q W    L W+P EYG +      +  
Sbjct: 34  KDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAAD 93

Query: 71  IWRPDIVLYNKF 82
           IW PDI  Y+  
Sbjct: 94  IWTPDITAYSST 105

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 88.8 bits (220), Expect = 6e-23
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 12 NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
              + V L+   T L   N K + +TTN+W+E  W DY+L W   EY G+ ++ +PS+ 
Sbjct: 24 LDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSEL 83

Query: 71 IWRPDIVLYN 80
          +W PD+VL N
Sbjct: 84 LWLPDVVLEN 93

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211

 Score = 82.2 bits (203), Expect = 2e-21
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 6  VLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHML 64
           +   Q    + V +      +   N     +    W + +W D  L W          +
Sbjct: 18 DVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQ--V 75

Query: 65 HVPSDHIWRPDIVLYN 80
           VP   +W PD+  YN
Sbjct: 76 SVPISSLWVPDLAAYN 91

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203

 Score = 81.8 bits (202), Expect = 2e-21
 Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 11 QNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSD 69
           N+  L V L      +   + +   +   LW + SW              +  + +P  
Sbjct: 20 SNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSS-LLSSSSLDQVSLPVS 78

Query: 70 HIWRPDIVLYNKFTVWQ 86
           +W PD+  YN     +
Sbjct: 79 KMWTPDLSFYNAIAAPE 95

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 83.3 bits (205), Expect = 1e-20
 Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 12 NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
              + V L+   T L   N K + +TTN+W+E  W DY+L W   EY G+ ++ +PS+ 
Sbjct: 24 LDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSEL 83

Query: 71 IWRPDIVLYNKF 82
          +W PD+VL N  
Sbjct: 84 LWLPDVVLENNV 95

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 82.9 bits (204), Expect = 2e-20
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 12  NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
           N+E + + L    + L      ++ +TTN+W++ +WYD++L W   EY  + +L +  + 
Sbjct: 48  NNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPEL 107

Query: 71  IWRPDIVLYN 80
           IW PDIVL N
Sbjct: 108 IWIPDIVLQN 117

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 81.2 bits (201), Expect = 3e-20
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 30 NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
          +   +    N ++  SW D +L ++P    GV +     + IW P+I   N
Sbjct: 35 DDCAETFKVNAFLSLSWKDRRLAFDPVRS-GVRVKTYEPEAIWIPEIRFVN 84

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230

 Score = 79.6 bits (196), Expect = 4e-20
 Identities = 20/53 (37%), Positives = 26/53 (49%)

Query: 28  RHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
           R    N I T    V+ SW D  LRW+P+       + +  D IW PDI L+N
Sbjct: 51  RGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIWTPDIKLFN 103

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 80.9 bits (199), Expect = 6e-20
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 12  NHETLLVELRTA-TLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
             + + V +    T L   N KN+ MTT++++  +W DY+L+W+P  Y G+  L +PSD 
Sbjct: 49  VGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDD 108

Query: 71  IWRPDIVLYN 80
           +W+PDIVL N
Sbjct: 109 VWQPDIVLMN 118

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 78.1 bits (192), Expect = 7e-19
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 12  NHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDH 70
           +   + + +      L   +  NQI+ TN+ + Q W D +LRW P +YGG+  + +PSD 
Sbjct: 49  HTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDD 108

Query: 71  IWRPDIVLYN 80
           +W PD+VLYN
Sbjct: 109 VWLPDLVLYN 118

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score = 70.4 bits (173), Expect = 6e-17
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 30 NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
          + K +    N ++  SW D +L ++P    GV +     + IW P+I   N
Sbjct: 31 DDKAETFKVNAFLSLSWKDRRLAFDPVRS-GVRVKTYEPEAIWIPEIRFVN 80

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 69.1 bits (169), Expect = 9e-16
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 32 KNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVP-SDHIWRPDIVLYN 80
           N   +  L + +SW D +L +  K  G    + +     IW PD    N
Sbjct: 45 VNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPN 94

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 68.5 bits (168), Expect = 1e-15
 Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 3/52 (5%)

Query: 32 KNQIMTTNLWVEQSWYDYKLRW---EPKEYGGVHMLHVPSDHIWRPDIVLYN 80
            Q    + ++   W     +    +P       +    ++ +W P +   N
Sbjct: 29 LEQTYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFIN 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	86
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	99.95
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	99.95
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	99.95
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	99.95
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	99.95
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	99.94
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.94
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	99.93
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.93
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.93
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.93
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.93
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.93
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.93
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.93
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.92
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	99.92
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.91
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	99.9
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.73

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=99.95  E-value=3e-29  Score=163.10  Aligned_cols=83  Identities=22%  Similarity=0.482  Sum_probs=79.5

Q ss_pred             CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      .+||+.+||+.+++|+.|.++ +|.+|++|+|++|++++++|++|.|+|+||+|+| +|+||+.+.++.++||+||++++
T Consensus        14 ~~Y~~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~   92 (205)
T 4aod_A           14 SRCSPLNIPIEDDQPVKVSFEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFN-EFTSFKELTVPIAEIWTPDIFIF   92 (205)
T ss_dssp             HTTCSSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCEEET
T ss_pred             hcCCCcCCCCCCCccEEEEEEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCC-cCCCccEeeccHHhcCcCCEEEE
Confidence            379999999998999999999 9999999999999999999999999999999997 79999999999999999999999


Q ss_pred             ecCCc
Q psy16244         80 NKFTV   84 (86)
Q Consensus        80 ns~d~   84 (86)
                      |++++
T Consensus        93 N~~~~   97 (205)
T 4aod_A           93 DSVGA   97 (205)
T ss_dssp             TBSSC
T ss_pred             ccccc
Confidence            99864

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=99.95  E-value=2.9e-29  Score=163.26  Aligned_cols=82  Identities=23%  Similarity=0.438  Sum_probs=79.2

Q ss_pred             CCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEEe
Q psy16244          2 GQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN   80 (86)
Q Consensus         2 ~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~n   80 (86)
                      +||+..||+.+++|++|.++ .|.+|++|+|++|++++++|++|.|+|+||+|+| +|+|++.+.++.++||+||++++|
T Consensus        15 ~Yn~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~-~~~~i~~i~v~~~~IW~PDi~l~N   93 (205)
T 4aoe_A           15 RANPNNIPIVDEQPVKVSFKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSN-ECTTFNELTLPSKYIWLPHIEVYN   93 (205)
T ss_dssp             TTCCSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSC-CCSCCCEEEEEGGGSCCCCCEETT
T ss_pred             hcCCCCCCCCCCccEEEEEEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCC-cCCCccEEEeCHHHhccccEEEec
Confidence            79999999999999999999 9999999999999999999999999999999997 799999999999999999999999


Q ss_pred             cCCc
Q psy16244         81 KFTV   84 (86)
Q Consensus        81 s~d~   84 (86)
                      +++.
T Consensus        94 ~~~~   97 (205)
T 4aoe_A           94 SIGK   97 (205)
T ss_dssp             BSSC
T ss_pred             cccc
Confidence            9864

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=99.95  E-value=3.6e-29  Score=162.37  Aligned_cols=83  Identities=28%  Similarity=0.539  Sum_probs=80.7

Q ss_pred             CCCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          1 MGQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         1 ~~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      .+||+.+||+.++.|++|.++ +|.+|++|+|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus        12 ~~Yd~~~RP~~~~~~v~V~~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~~~~iW~PDi~~~   91 (204)
T 3sq6_A           12 KNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPISSLWVPDLAAY   91 (204)
T ss_dssp             TTCCTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEEGGGSCCCCEEET
T ss_pred             hcCCCCCCCCCCCCcEEEEEEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcCHHHCcCCCEEeE
Confidence            489999999988899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCC
Q psy16244         80 NKFT   83 (86)
Q Consensus        80 ns~d   83 (86)
                      |+++
T Consensus        92 N~~~   95 (204)
T 3sq6_A           92 NAIS   95 (204)
T ss_dssp             TBSS
T ss_pred             cccc
Confidence            9998

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=99.95  E-value=7.6e-29  Score=161.43  Aligned_cols=85  Identities=39%  Similarity=0.757  Sum_probs=81.9

Q ss_pred             CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244          1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL   78 (86)
Q Consensus         1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i   78 (86)
                      .+||+.+||+.+ +.|+.|.++ ++.+|++|+|++|.+++++|++|.|+|+||+|+|++|+|++.+.++.++||+||+++
T Consensus        14 ~~Yd~~~RP~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~~~~iW~PDi~~   93 (212)
T 2qc1_B           14 EDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVL   93 (212)
T ss_dssp             TTCCSSSCSCSSTTSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEECGGGSCCCCEEE
T ss_pred             HhCCCCCCCccCCCCcEEEEEEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcchhhccCCceec
Confidence            489999999988 899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcC
Q psy16244         79 YNKFTVW   85 (86)
Q Consensus        79 ~ns~d~~   85 (86)
                      +|++++-
T Consensus        94 ~N~~~~~  100 (212)
T 2qc1_B           94 YNNADGD  100 (212)
T ss_dssp             CCBTTTS
T ss_pred             ccccccc
Confidence            9999864

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=99.95  E-value=1.9e-28  Score=161.68  Aligned_cols=84  Identities=27%  Similarity=0.440  Sum_probs=81.3

Q ss_pred             CCCCCCC---CCCC-CCeEEEEEc-chhhhhheeee----eeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcc
Q psy16244          2 GQNRVLK---LLQN-HETLLVELR-TATLLSRHNLK----NQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIW   72 (86)
Q Consensus         2 ~Yd~~~r---P~~~-~~~~~V~~~-~l~~i~~v~e~----~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW   72 (86)
                      +||+.+|   |+.+ +.|++|.++ ++.+|++|+|+    +|++++++|++|.|+|+||+|+|++|+|++.+.++.++||
T Consensus        16 ~Yd~~~R~~~P~~~~~~pv~V~~~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~i~~i~l~~~~IW   95 (230)
T 4afh_A           16 TYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFDFQKIEISPDEIW   95 (230)
T ss_dssp             HHHHHCSCSCSCSSBCCCEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSCCSEEEECGGGSC
T ss_pred             hcChhhccCCCCCCCCCCEEEEEEEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCCeeEEEeccCCEE
Confidence            6999999   9988 899999999 99999999999    9999999999999999999999999999999999999999


Q ss_pred             cCCEEEEecCCcC
Q psy16244         73 RPDIVLYNKFTVW   85 (86)
Q Consensus        73 ~Pdi~i~ns~d~~   85 (86)
                      +||++++|++++-
T Consensus        96 ~PDi~l~N~~~~~  108 (230)
T 4afh_A           96 TPDIKLFNSVDLD  108 (230)
T ss_dssp             CCCEEETTCSSSS
T ss_pred             CCcEEEEeccccc
Confidence            9999999999874

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=99.94  E-value=1.6e-27  Score=155.07  Aligned_cols=81  Identities=19%  Similarity=0.379  Sum_probs=77.2

Q ss_pred             CCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEEe
Q psy16244          2 GQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN   80 (86)
Q Consensus         2 ~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~n   80 (86)
                      +||+.+||+.++.|++|.++ ++.+|++++|++|.+++++|++|.|+|+||+|+|++|+|  .+.++.++||+||++++|
T Consensus        14 ~Yd~~~RP~~~~~~~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~--~l~~~~~~iW~PDi~~~N   91 (211)
T 1uw6_A           14 TSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPISSLWVPDLAAYN   91 (211)
T ss_dssp             HCCTTSCCCCTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCS--EEEEEGGGSCCCCEEETT
T ss_pred             cCCCcCCCCCCCCcEEEEEEEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCC--eEEccHHHccCCCEeeec
Confidence            79999999944899999999 999999999999999999999999999999999999998  889999999999999999


Q ss_pred             cCCc
Q psy16244         81 KFTV   84 (86)
Q Consensus        81 s~d~   84 (86)
                      ++++
T Consensus        92 ~~~~   95 (211)
T 1uw6_A           92 AISK   95 (211)
T ss_dssp             BCSC
T ss_pred             cccc
Confidence            9875

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.94  E-value=2.7e-27  Score=164.44  Aligned_cols=84  Identities=30%  Similarity=0.628  Sum_probs=81.4

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +||+.+||+.+ ++|++|.++ .+.+|.+++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus        16 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~   95 (369)
T 2bg9_C           16 KYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVLQ   95 (369)
T ss_dssp             TSCSSSCCSSSSSSCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEEECGGGSCCCCEEET
T ss_pred             CCCCCCCCCCCCCCCEEEEEEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEEecHHhccCCcEecc
Confidence            89999999987 899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcC
Q psy16244         80 NKFTVW   85 (86)
Q Consensus        80 ns~d~~   85 (86)
                      |++++-
T Consensus        96 N~~~~~  101 (369)
T 2bg9_C           96 NNNDGQ  101 (369)
T ss_dssp             TTCSSC
T ss_pred             cccccc
Confidence            999864

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=99.93  E-value=3.8e-27  Score=155.00  Aligned_cols=83  Identities=22%  Similarity=0.384  Sum_probs=79.5

Q ss_pred             CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244          1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL   78 (86)
Q Consensus         1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i   78 (86)
                      .+||+.  |+.+ +.|+.|.++ ++.+|++++|++|.+++++|++|.|+|+||+|+|++|+|++.+.++.++||+||+++
T Consensus        24 ~~Yd~~--P~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~~~~IW~PDi~l  101 (228)
T 2wn9_A           24 NRSPMY--PGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTSAADIWTPDITA  101 (228)
T ss_dssp             TSSCCC--CCCBTTBCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEEGGGSCCCCEEE
T ss_pred             hhcCCC--cccCCCCCEEEEEEEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEecHHHccCCceec
Confidence            489999  9887 899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcC
Q psy16244         79 YNKFTVW   85 (86)
Q Consensus        79 ~ns~d~~   85 (86)
                      +|++++-
T Consensus       102 ~N~~~~~  108 (228)
T 2wn9_A          102 YSSTRPV  108 (228)
T ss_dssp             SSBSSCC
T ss_pred             ccccccc
Confidence            9999863

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.93  E-value=4.9e-27  Score=163.22  Aligned_cols=84  Identities=37%  Similarity=0.652  Sum_probs=81.2

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +||+.+||+.+ ++|++|.++ .+.+|.+++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus        14 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~   93 (370)
T 2bg9_B           14 NYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLM   93 (370)
T ss_dssp             HCCTTCCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEESSSSCCCCEEES
T ss_pred             cCCCCCCCCCCCCCCEEEEEEEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEechhhccCCCcccc
Confidence            79999999987 899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcC
Q psy16244         80 NKFTVW   85 (86)
Q Consensus        80 ns~d~~   85 (86)
                      |++++-
T Consensus        94 N~~~~~   99 (370)
T 2bg9_B           94 NNNDGS   99 (370)
T ss_dssp             SCCCSC
T ss_pred             cccccc
Confidence            998863

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.93  E-value=6.4e-27  Score=168.68  Aligned_cols=85  Identities=29%  Similarity=0.612  Sum_probs=82.0

Q ss_pred             CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEE
Q psy16244          1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVL   78 (86)
Q Consensus         1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i   78 (86)
                      .+||+.+||+.+ +++++|.++ ++.+|+++||++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||+++
T Consensus        36 ~~Yd~~~RPv~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~vp~~~IW~PDi~l  115 (522)
T 4aq5_C           36 NKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILRLRPELIWIPDIVL  115 (522)
T ss_dssp             TTSCSSSCCSSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEEECGGGSCCCCEEE
T ss_pred             cCCCCCCCCCCCCCCcEEEEEEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEeeccCCEECCcEec
Confidence            489999999988 899999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCcC
Q psy16244         79 YNKFTVW   85 (86)
Q Consensus        79 ~ns~d~~   85 (86)
                      +|++|+-
T Consensus       116 ~N~~d~~  122 (522)
T 4aq5_C          116 QNNNDGQ  122 (522)
T ss_dssp             TTTCSSC
T ss_pred             cccccCC
Confidence            9999874

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.93  E-value=8.9e-27  Score=160.48  Aligned_cols=84  Identities=19%  Similarity=0.331  Sum_probs=79.6

Q ss_pred             CCCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEee-CCCCcccCCEE
Q psy16244          1 MGQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHV-PSDHIWRPDIV   77 (86)
Q Consensus         1 ~~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~-~~~~iW~Pdi~   77 (86)
                      .+||+.+||+.+ ++|++|.++ ++.+|++++|++|++++++|++|.|+|+||+|+|++|++++.+.+ +.++||+||++
T Consensus        12 ~~Yd~~~RP~~~~~~~v~V~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~~~~IW~PDi~   91 (347)
T 3rhw_A           12 SGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTF   91 (347)
T ss_dssp             SCCCTTSCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCTTCCCCCCCEE
T ss_pred             cCCCCCCCCCCCCCCcEEEEEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecchhceecCCEe
Confidence            489999999988 799999999 999999999999999999999999999999999999999998886 78999999999


Q ss_pred             EEecCCc
Q psy16244         78 LYNKFTV   84 (86)
Q Consensus        78 i~ns~d~   84 (86)
                      ++|++++
T Consensus        92 l~N~~~~   98 (347)
T 3rhw_A           92 FPNEKQA   98 (347)
T ss_dssp             CTTEEEE
T ss_pred             eeccccc
Confidence            9998864

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.93  E-value=4.4e-27  Score=163.40  Aligned_cols=84  Identities=35%  Similarity=0.695  Sum_probs=81.2

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +||+.+||+.+ ++|++|.++ ++.+|.+++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus        13 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~~~IW~PDi~~~   92 (370)
T 2bg9_E           13 DYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLE   92 (370)
T ss_dssp             HCCSSSCCCSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCCGGGSCCCCEEES
T ss_pred             ccCCCCCCCCCCCCCEEEEEEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeechhccCCCCEeec
Confidence            79999999987 899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcC
Q psy16244         80 NKFTVW   85 (86)
Q Consensus        80 ns~d~~   85 (86)
                      |++++-
T Consensus        93 N~~~~~   98 (370)
T 2bg9_E           93 NNVDGQ   98 (370)
T ss_dssp             SSCCSC
T ss_pred             cccCCc
Confidence            999864

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.93  E-value=3.4e-27  Score=168.08  Aligned_cols=84  Identities=33%  Similarity=0.677  Sum_probs=81.4

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +||+.+||+.+ ++|++|.++ ++.+|+++||++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus        38 ~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~vp~~~IW~PDi~l~  117 (461)
T 4aq5_A           38 NYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLY  117 (461)
T ss_dssp             TCCSSCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEEEGGGSCCCCEEES
T ss_pred             cCCCCCCCCCCCCCcEEEEEEEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEecCCCEECCceeee
Confidence            89999999988 899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcC
Q psy16244         80 NKFTVW   85 (86)
Q Consensus        80 ns~d~~   85 (86)
                      |++|+-
T Consensus       118 N~~d~~  123 (461)
T 4aq5_A          118 NNADGD  123 (461)
T ss_dssp             SCCCSC
T ss_pred             cccccc
Confidence            999864

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.93  E-value=5.3e-27  Score=167.98  Aligned_cols=84  Identities=35%  Similarity=0.695  Sum_probs=81.5

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +||+.+||+.+ +++++|.++ ++.+|++|+|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus        13 ~Yd~~~RP~~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~   92 (488)
T 4aq5_E           13 DYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPSELLWLPDVVLE   92 (488)
T ss_dssp             HCCSSSCCCSSTTSCCCEEEEEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCCTTSSCCCCEECS
T ss_pred             cCCCCCCCCCCCCCcEEEEEEEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecCccCEECCceehh
Confidence            79999999988 899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcC
Q psy16244         80 NKFTVW   85 (86)
Q Consensus        80 ns~d~~   85 (86)
                      |++|+-
T Consensus        93 N~~d~~   98 (488)
T 4aq5_E           93 NNVDGQ   98 (488)
T ss_dssp             SSCCSC
T ss_pred             cccccc
Confidence            999864

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.93  E-value=4.3e-27  Score=163.42  Aligned_cols=84  Identities=33%  Similarity=0.677  Sum_probs=81.0

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +||+.+||+.+ ++|++|.++ .+.+|.+++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus        14 ~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~~~~IW~PDi~~~   93 (370)
T 2bg9_A           14 NYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLPSDDVWLPDLVLY   93 (370)
T ss_dssp             SCCTTCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEEGGGSCCCCEEET
T ss_pred             cCCCCCCCCCCCCCCEEEEEEEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEechhhccCCcEecc
Confidence            79999999987 899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcC
Q psy16244         80 NKFTVW   85 (86)
Q Consensus        80 ns~d~~   85 (86)
                      |++++-
T Consensus        94 N~~~~~   99 (370)
T 2bg9_A           94 NNADGD   99 (370)
T ss_dssp             TCCCSC
T ss_pred             cccccc
Confidence            998763

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.92  E-value=8.3e-27  Score=167.14  Aligned_cols=84  Identities=37%  Similarity=0.652  Sum_probs=81.4

Q ss_pred             CCCCCCCCCCC-CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEE
Q psy16244          2 GQNRVLKLLQN-HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLY   79 (86)
Q Consensus         2 ~Yd~~~rP~~~-~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~   79 (86)
                      +||+.+||+.+ +++++|.++ ++.+|++++|++|++++++|++|.|+|+||+|+|++|+|++.+.++.++||+||++++
T Consensus        38 ~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~~~~IW~PDi~l~  117 (493)
T 4aq5_B           38 NYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIPSDDVWQPDIVLM  117 (493)
T ss_dssp             HCCSSSCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEECSCSSCCCCCEES
T ss_pred             cCCCCCCCCCCCCCcEEEEEEEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEecccccCccCcEEEe
Confidence            79999999988 899999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCcC
Q psy16244         80 NKFTVW   85 (86)
Q Consensus        80 ns~d~~   85 (86)
                      |++|+-
T Consensus       118 N~~d~~  123 (493)
T 4aq5_B          118 NNNDGS  123 (493)
T ss_dssp             SCCCSC
T ss_pred             cccccc
Confidence            999863

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=99.92  E-value=8.4e-26  Score=146.22  Aligned_cols=80  Identities=19%  Similarity=0.360  Sum_probs=76.8

Q ss_pred             CCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCce-eecCCCCCCeeEEeeCCCCcccCCEEEEe
Q psy16244          3 QNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKL-RWEPKEYGGVHMLHVPSDHIWRPDIVLYN   80 (86)
Q Consensus         3 Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL-~W~p~~~~~i~~~~~~~~~iW~Pdi~i~n   80 (86)
                      ||+.+||+.++.|++|.++ ++.+|++++|++|.+++++|++|.|+|+|| +|+|++  |++.+.++.++||+||++++|
T Consensus        12 ~d~~~RP~~~~~p~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~--~i~~~~~~~~~iW~PDi~~~N   89 (203)
T 2bj0_A           12 GESDVIPLSNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSS--SLDQVSLPVSKMWTPDLSFYN   89 (203)
T ss_dssp             HTTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTS--SCSEEEEEGGGSCCCCEEETT
T ss_pred             cCCccCCCCCCCCEEEEEEEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccC--CceEEEEchhhccCCCccccc
Confidence            7999999988899999999 999999999999999999999999999999 999998  899999999999999999999


Q ss_pred             c-CCc
Q psy16244         81 K-FTV   84 (86)
Q Consensus        81 s-~d~   84 (86)
                      + +++
T Consensus        90 ~~~~~   94 (203)
T 2bj0_A           90 AIAAP   94 (203)
T ss_dssp             CSSCC
T ss_pred             ccccc
Confidence            9 875

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.91  E-value=3.8e-25  Score=150.96  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=76.4

Q ss_pred             CCCCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEEe
Q psy16244          2 GQNRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN   80 (86)
Q Consensus         2 ~Yd~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~n   80 (86)
                      .+|+++||..+++|++|.++ ++.+|+++||++|++++++|++|.|+|+||+|+|++|+ ++.+.++.++||+||++++|
T Consensus         6 q~d~~~RP~~~~~~v~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~-i~~~~~~~~~IW~PDi~l~N   84 (321)
T 3tlw_A            6 QDMVSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFVN   84 (321)
T ss_dssp             ---CCCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTC-CSSEECCGGGSCCCCEEESS
T ss_pred             cCCCccCCCCCCCCEEEEEEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCC-eeeecccccCeEcCcEEeec
Confidence            47999999877999999999 99999999999999999999999999999999999998 99999999999999999999


Q ss_pred             cCCc
Q psy16244         81 KFTV   84 (86)
Q Consensus        81 s~d~   84 (86)
                      ++++
T Consensus        85 ~~~~   88 (321)
T 3tlw_A           85 VENA   88 (321)
T ss_dssp             BSSC
T ss_pred             cccc
Confidence            9886

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=99.90  E-value=3.3e-25  Score=143.61  Aligned_cols=80  Identities=21%  Similarity=0.281  Sum_probs=75.1

Q ss_pred             CCCCCCCCCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCEEEEecC
Q psy16244          4 NRVLKLLQNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYNKF   82 (86)
Q Consensus         4 d~~~rP~~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi~i~ns~   82 (86)
                      .+++||+.+++|+.|.++ ++.+|++|+|++|++++++|++|.|+|+||+|+|++ +|++.+.++.++||+||++++|++
T Consensus         4 ~~~~RP~~~~~pv~V~~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~-~~i~~~~~~~~~IW~PDi~l~N~~   82 (201)
T 3igq_A            4 MVSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVR-SGVRVKTYEPEAIWIPEIRFVNVE   82 (201)
T ss_dssp             CCSCCCCBTTBCEEEEEEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHH-HTCSCEECCGGGSCCCCEEESSBS
T ss_pred             ccccCCCCCCCCEEEEEEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcC-CCEeEecccccCcCccCEEEEccc
Confidence            368999955899999999 999999999999999999999999999999999988 589999999999999999999997


Q ss_pred             Cc
Q psy16244         83 TV   84 (86)
Q Consensus        83 d~   84 (86)
                      ++
T Consensus        83 ~~   84 (201)
T 3igq_A           83 NA   84 (201)
T ss_dssp             SS
T ss_pred             cc
Confidence            64

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.73  E-value=5.5e-19  Score=120.49  Aligned_cols=72  Identities=14%  Similarity=0.152  Sum_probs=59.8

Q ss_pred             CCCC---CCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEE--------eeCCCCcccCCE
Q psy16244          9 LLQN---HETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHML--------HVPSDHIWRPDI   76 (86)
Q Consensus         9 P~~~---~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~--------~~~~~~iW~Pdi   76 (86)
                      |+.|   ++|++|.++ ++.+|.++||++|++++++|++|.|+|+||+|+     |++.+        .++.++||+||+
T Consensus         2 Pv~n~s~~~pv~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~-----~~~~l~l~~~~~~~ip~~~IW~Pdi   76 (322)
T 3rqw_A            2 PADNAADARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTP-----GDKPLIVENTQIERWINNGLWVPAL   76 (322)
T ss_dssp             ---------CEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCCS-----TTSCEEEETHHHHHHHHTTCCCCCE
T ss_pred             CcCCCCCCCCEEEEEEEEEEeeccccccCcEEEEEEEEeeEEechhhCCC-----CCCceeecchhhcccccccccCCcE
Confidence            6665   469999999 999999999999999999999999999999984     45555        446899999999


Q ss_pred             EEEecCCcC
Q psy16244         77 VLYNKFTVW   85 (86)
Q Consensus        77 ~i~ns~d~~   85 (86)
                      +++|++++-
T Consensus        77 ~l~N~~~~~   85 (322)
T 3rqw_A           77 EFINVVGSP   85 (322)
T ss_dssp             EETTBSSCC
T ss_pred             EEEcccCcc
Confidence            999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	86
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	4e-11

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 54.0 bits (129), Expect = 4e-11
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 2/51 (3%)

Query: 30 NLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDIVLYN 80
          N     +    W + +W D  L W          + VP   +W PD+  YN
Sbjct: 43 NEITNEVDVVFWQQTTWSDRTLAWNSSHSPD--QVSVPISSLWVPDLAAYN 91

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	86
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	99.89

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.89  E-value=2e-24  Score=138.91  Aligned_cols=81  Identities=19%  Similarity=0.389  Sum_probs=72.2

Q ss_pred             CCCCCCCCC----CCCCeEEEEEc-chhhhhheeeeeeEEeeecEEEEEEEeCceeecCCCCCCeeEEeeCCCCcccCCE
Q psy16244          2 GQNRVLKLL----QNHETLLVELR-TATLLSRHNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVHMLHVPSDHIWRPDI   76 (86)
Q Consensus         2 ~Yd~~~rP~----~~~~~~~V~~~-~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~W~p~~~~~i~~~~~~~~~iW~Pdi   76 (86)
                      +|+|..||.    .++.|+.|.++ .|.+|++++|++|++++.+|++|.|+|+||+|+|++|+++  +.++.++||+|||
T Consensus        10 ~y~~~~rP~~~P~~~~~pv~V~~~l~l~~i~~vde~~q~~~~~~~~~~~W~D~rL~Wnp~~~~~~--~~v~~~~iW~PDi   87 (208)
T d1uw6a_          10 NIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQ--VSVPISSLWVPDL   87 (208)
T ss_dssp             HHHHHCCTTSCCCCTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCSE--EEEEGGGSCCCCE
T ss_pred             ccccccCCCcCCcCCCCCEEEEEEEEEEeEeeecccCCEEEEEEEEEEEEECCccccccccCCce--eccchhccccccE
Confidence            567777775    33789999999 9999999999999999999999999999999999999875  5677899999999


Q ss_pred             EEEecCCc
Q psy16244         77 VLYNKFTV   84 (86)
Q Consensus        77 ~i~ns~d~   84 (86)
                      +++|+++.
T Consensus        88 ~l~n~~~~   95 (208)
T d1uw6a_          88 AAYNAISK   95 (208)
T ss_dssp             EETTBCSC
T ss_pred             EEEEEccc
Confidence            99998764