Psyllid ID: psy16246

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNGA
Secondary Structure (PSIPRED)
cccccccccccccccccEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccEEEEEccEEEEEEEEEEcEEEccccEEEEEEEEccEEcccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccHHHccccEEEEccccccccccEEEEEcccccccccEEEEEEEEEEEEEccEEEEcccEEEEcccEEEEEEcccccccEEEEEccEEEcccEEEEEEEcc
Coil and Loop (DISEMBL)
MKMKKKRKEKEEKERKKEEQKKevgekkegeeEEEKKKKKVEEKKnnkenadgnfeVTLATKATIYYQGlvewkppaiykssceidveyfpfdeqtcvlkfgswtydgfkvpgsvnga
Flexible Loop (DISEMBL)
mkmkkkrkekeekerkkeeqkkevgekkegeeeeekkkkkveekknnkenadgnfevtlATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSwtydgfkvpgsvnga
Low Complexity Region (SEG)
mkmkkkrkekeekerkkeeqkkevgekkegeeeeekkkkkveekknnkeNADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNGA
Disordered region (IsUnstruct)
******************************************************FEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKV*******
Disordered Region (DISOPRED)
******R***EEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN**
Disordered Region (DISEMBL)
***********************************************KENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNGA
Disordered Region (DISPRO)
*KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
P91766	516	Acetylcholine receptor su	N/A	N/A	0.525	0.120	0.870	5e-29
P09478	567	Acetylcholine receptor su	no	N/A	0.525	0.109	0.758	1e-24
P17644	576	Acetylcholine receptor su	no	N/A	0.5	0.102	0.711	9e-22
P25162	519	Acetylcholine receptor su	no	N/A	0.525	0.119	0.709	2e-21
Q9N587	502	Acetylcholine receptor su	yes	N/A	0.525	0.123	0.677	2e-21
O70174	629	Neuronal acetylcholine re	yes	N/A	0.525	0.098	0.661	3e-21
P09483	630	Neuronal acetylcholine re	yes	N/A	0.525	0.098	0.661	3e-21
P23414	557	Acetylcholine receptor su	N/A	N/A	0.5	0.105	0.694	4e-21
Q5IS77	627	Neuronal acetylcholine re	yes	N/A	0.525	0.098	0.645	7e-21
P43681	627	Neuronal acetylcholine re	yes	N/A	0.525	0.098	0.645	7e-21

>sp|P91766|ACH1_MANSE Acetylcholine receptor subunit alpha-like OS=Manduca sexta GN=ARA1 PE=2 SV=1

 Score =  125 bits (315), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKAT+ Y G VEW+PPAIYKSSCEIDVEYFPFD+QTCV+KFGSWTYDGF
Sbjct: 116 NADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDQQTCVMKFGSWTYDGF 175

Query: 110 KV 111
           +V
Sbjct: 176 QV 177

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.
Manduca sexta (taxid: 7130)

>sp|P09478|ACH1_DROME Acetylcholine receptor subunit alpha-like 1 OS=Drosophila melanogaster GN=nAcRalpha-96Aa PE=2 SV=2

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 54/62 (87%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGN+EVT+ TKA +++ G V WKPPAIYKS CEIDVEYFPFDEQTC +KFGSWTYDG+
Sbjct: 116 NADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGY 175

Query: 110 KV 111
            V
Sbjct: 176 MV 177

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|P17644|ACH2_DROME Acetylcholine receptor subunit alpha-like 2 OS=Drosophila melanogaster GN=nAcRalpha-96Ab PE=2 SV=1

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 48/59 (81%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
           NADG + VT  TKA ++Y G V W PPAI+KSSCEIDV YFPFD+QTC +KFGSWTYDG
Sbjct: 136 NADGEYVVTTMTKAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDG 194

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|P25162|ACH4_DROME Acetylcholine receptor subunit beta-like 2 OS=Drosophila melanogaster GN=nAcRbeta-96A PE=2 SV=3

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           N DGN+EVTL TKAT+ Y G V W+PPAIYKSSCE++VEYFP+DEQ C +KFGSWTY+G 
Sbjct: 121 NWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGA 180

Query: 110 KV 111
           +V
Sbjct: 181 QV 182

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Drosophila melanogaster (taxid: 7227)

>sp|Q9N587|ACH6_CAEEL Acetylcholine receptor subunit alpha-type unc-63 OS=Caenorhabditis elegans GN=unc-63 PE=1 SV=2

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGN++VT+ TKA + Y G VEW PPAIYKS C+IDVE+FPFD Q C +KFGSWTY G 
Sbjct: 118 NADGNYQVTIMTKAKLTYNGTVEWAPPAIYKSMCQIDVEFFPFDRQQCEMKFGSWTYGGL 177

Query: 110 KV 111
           +V
Sbjct: 178 EV 179

Acetylcholine receptor.

Caenorhabditis elegans (taxid: 6239)

>sp|O70174|ACHA4_MOUSE Neuronal acetylcholine receptor subunit alpha-4 OS=Mus musculus GN=Chrna4 PE=2 SV=2

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADG+F VT  TKA ++Y G V+W PPAIYKSSC IDV +FPFD+Q C +KFGSWTYD  
Sbjct: 130 NADGDFAVTHLTKAHLFYDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKA 189

Query: 110 KV 111
           K+
Sbjct: 190 KI 191

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Mus musculus (taxid: 10090)

>sp|P09483|ACHA4_RAT Neuronal acetylcholine receptor subunit alpha-4 OS=Rattus norvegicus GN=Chrna4 PE=1 SV=3

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADG+F VT  TKA ++Y G V+W PPAIYKSSC IDV +FPFD+Q C +KFGSWTYD  
Sbjct: 130 NADGDFAVTHLTKAHLFYDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKA 189

Query: 110 KV 111
           K+
Sbjct: 190 KI 191

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Rattus norvegicus (taxid: 10116)

>sp|P23414|ACH1_SCHGR Acetylcholine receptor subunit alpha-L1 OS=Schistocerca gregaria PE=2 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
           NADG + VT  TKA +++ G V W PPAI+KSSCEIDV YFPFD+QTC +KFGSWTYDG
Sbjct: 118 NADGEYVVTTMTKAVLHHTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDG 176

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Schistocerca gregaria (taxid: 7010)

>sp|Q5IS77|ACHA4_PANTR Neuronal acetylcholine receptor subunit alpha-4 OS=Pan troglodytes GN=CHRNA4 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 49/62 (79%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADG+F VT  TKA +++ G V+W PPAIYKSSC IDV +FPFD+Q C +KFGSWTYD  
Sbjct: 128 NADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKA 187

Query: 110 KV 111
           K+
Sbjct: 188 KI 189

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Pan troglodytes (taxid: 9598)

>sp|P43681|ACHA4_HUMAN Neuronal acetylcholine receptor subunit alpha-4 OS=Homo sapiens GN=CHRNA4 PE=1 SV=2

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 49/62 (79%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADG+F VT  TKA +++ G V+W PPAIYKSSC IDV +FPFD+Q C +KFGSWTYD  
Sbjct: 128 NADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKA 187

Query: 110 KV 111
           K+
Sbjct: 188 KI 189

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
242004897	569	acetylcholine receptor protein alpha 1,	0.525	0.108	0.983	2e-31
267925056	577	nicotinic acetylcholine receptor subunit	0.525	0.107	0.983	2e-31
375004963	563	nicotinic acetylcholine receptor alpha4	0.525	0.110	0.983	3e-31
383847485	569	PREDICTED: acetylcholine receptor subuni	0.525	0.108	0.983	3e-31
380018139	569	PREDICTED: acetylcholine receptor subuni	0.525	0.108	0.983	3e-31
148277659	569	nicotinic acetylcholine receptor alpha4	0.525	0.108	0.983	3e-31
157954029	556	nicotinic acetylcholine receptor alpha4	0.525	0.111	0.983	4e-31
221222661	321	truncated nicotinic acetylcholine recept	0.525	0.193	0.983	4e-31
290560640	569	nicotinic acetylcholine receptor subunit	0.525	0.108	0.983	6e-31
340728579	187	PREDICTED: acetylcholine receptor subuni	0.525	0.331	0.983	7e-31

>gi|242004897|ref|XP_002423312.1| acetylcholine receptor protein alpha 1, 2, 3, 4 invertebrate, putative [Pediculus humanus corporis] gi|212506331|gb|EEB10574.1| acetylcholine receptor protein alpha 1, 2, 3, 4 invertebrate, putative [Pediculus humanus corporis]

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 121 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 180

Query: 110 KV 111
           KV
Sbjct: 181 KV 182

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|267925056|gb|ACY82686.1| nicotinic acetylcholine receptor subunit alpha 4 [Nasonia vitripennis]

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 120 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 179

Query: 110 KV 111
           KV
Sbjct: 180 KV 181

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|375004963|gb|AFA28128.1| nicotinic acetylcholine receptor alpha4 subunit [Periplaneta americana]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 119 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 178

Query: 110 KV 111
           KV
Sbjct: 179 KV 180

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847485|ref|XP_003699383.1| PREDICTED: acetylcholine receptor subunit alpha-like isoform 1 [Megachile rotundata]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 120 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 179

Query: 110 KV 111
           KV
Sbjct: 180 KV 181

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018139|ref|XP_003692993.1| PREDICTED: acetylcholine receptor subunit alpha-like isoform 1 [Apis florea]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 120 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 179

Query: 110 KV 111
           KV
Sbjct: 180 KV 181

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148277659|ref|NP_001091691.1| nicotinic acetylcholine receptor alpha4 subunit precursor [Apis mellifera] gi|68165864|gb|AAY87892.1| nicotinic acetylcholine receptor alpha4 subunit [Apis mellifera]

 Score =  139 bits (349), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 120 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 179

Query: 110 KV 111
           KV
Sbjct: 180 KV 181

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157954029|ref|NP_001103246.1| nicotinic acetylcholine receptor alpha4 subunit isoform 1 precursor [Tribolium castaneum] gi|154810973|gb|ABS86905.1| nicotinic acetylcholine receptor subunit alpha4 variant [Tribolium castaneum] gi|221222659|gb|ACM09852.1| nicotinic acetylcholine receptor subunit a4 [Tribolium castaneum] gi|270002747|gb|EEZ99194.1| nicotinic acetylcholine receptor subunit alpha4 [Tribolium castaneum]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 120 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 179

Query: 110 KV 111
           KV
Sbjct: 180 KV 181

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221222661|gb|ACM09853.1| truncated nicotinic acetylcholine receptor subunit a4 [Tribolium castaneum]

 Score =  138 bits (347), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 120 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 179

Query: 110 KV 111
           KV
Sbjct: 180 KV 181

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290560640|ref|NP_001166816.1| nicotinic acetylcholine receptor subunit alpha 4 isoform 2 precursor [Bombyx mori] gi|157367293|gb|ABV45515.1| nicotinic acetylcholine receptor subunit alpha 4 transcript variant 2 [Bombyx mori] gi|157783830|gb|ABV72686.1| nicotinic acetylcholine receptor alpha 4 subunit [Bombyx mori]

 Score =  137 bits (346), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 115 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 174

Query: 110 KV 111
           KV
Sbjct: 175 KV 176

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728579|ref|XP_003402598.1| PREDICTED: acetylcholine receptor subunit alpha-like [Bombus terrestris]

 Score =  137 bits (345), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 61/62 (98%), Positives = 62/62 (100%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADGNFEVTLATKATIY+QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct: 120 NADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 179

Query: 110 KV 111
           KV
Sbjct: 180 KV 181

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
FB|FBgn0037212	568	nAcRalpha-80B "nicotinic Acety	0.525	0.109	0.967	2.2e-29
FB|FBgn0015519	795	nAcRalpha-7E "nicotinic Acetyl	0.525	0.077	0.887	9.1e-27
FB|FBgn0000036	567	nAcRalpha-96Aa "nicotinic Acet	0.525	0.109	0.758	4e-23
FB|FBgn0004118	519	nAcRbeta-96A "nicotinic Acetyl	0.525	0.119	0.709	9.9e-21
WB|WBGene00006797	502	unc-63 [Caenorhabditis elegans	0.525	0.123	0.677	1.5e-20
FB|FBgn0000039	576	nAcRalpha-96Ab "nicotinic Acet	0.525	0.107	0.677	4.6e-20
ZFIN|ZDB-GENE-090505-3	627	chrna4 "cholinergic receptor,	0.525	0.098	0.661	7.1e-20
UNIPROTKB|F1PFF3	618	CHRNA4 "Uncharacterized protei	0.525	0.100	0.661	1.9e-19
MGI|MGI:87888	629	Chrna4 "cholinergic receptor,	0.525	0.098	0.661	1.9e-19
UNIPROTKB|F1LQT8	629	Chrna4 "Neuronal acetylcholine	0.525	0.098	0.661	1.9e-19

FB|FBgn0037212 nAcRalpha-80B "nicotinic Acetylcholine Receptor alpha 80B" [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 2.2e-29, P = 2.2e-29
 Identities = 60/62 (96%), Positives = 61/62 (98%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADGNFEVTLATKATIY +GLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF
Sbjct:   132 NADGNFEVTLATKATIYSEGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 191

Query:   110 KV 111
             KV
Sbjct:   192 KV 193

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0015519 nAcRalpha-7E "nicotinic Acetylcholine Receptor alpha 7E" [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 9.1e-27, P = 9.1e-27
 Identities = 55/62 (88%), Positives = 59/62 (95%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADGNFEVTLATKAT+ Y G VEW+PPAIYKSSCEIDVEYFPFDEQTCV+KFGSWTYDGF
Sbjct:   117 NADGNFEVTLATKATLNYTGRVEWRPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYDGF 176

Query:   110 KV 111
             +V
Sbjct:   177 QV 178

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0000036 nAcRalpha-96Aa "nicotinic Acetylcholine Receptor alpha 96Aa" [Drosophila melanogaster (taxid:7227)]

 Score = 274 (101.5 bits), Expect = 4.0e-23, P = 4.0e-23
 Identities = 47/62 (75%), Positives = 54/62 (87%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADGN+EVT+ TKA +++ G V WKPPAIYKS CEIDVEYFPFDEQTC +KFGSWTYDG+
Sbjct:   116 NADGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGY 175

Query:   110 KV 111
              V
Sbjct:   176 MV 177

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA;ISS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

FB|FBgn0004118 nAcRbeta-96A "nicotinic Acetylcholine Receptor beta 96A" [Drosophila melanogaster (taxid:7227)]

 Score = 251 (93.4 bits), Expect = 9.9e-21, P = 9.9e-21
 Identities = 44/62 (70%), Positives = 53/62 (85%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             N DGN+EVTL TKAT+ Y G V W+PPAIYKSSCE++VEYFP+DEQ C +KFGSWTY+G 
Sbjct:   121 NWDGNYEVTLMTKATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGA 180

Query:   110 KV 111
             +V
Sbjct:   181 QV 182

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

WB|WBGene00006797 unc-63 [Caenorhabditis elegans (taxid:6239)]

 Score = 249 (92.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADGN++VT+ TKA + Y G VEW PPAIYKS C+IDVE+FPFD Q C +KFGSWTY G 
Sbjct:   118 NADGNYQVTIMTKAKLTYNGTVEWAPPAIYKSMCQIDVEFFPFDRQQCEMKFGSWTYGGL 177

Query:   110 KV 111
             +V
Sbjct:   178 EV 179

GO:0045211 "postsynaptic membrane" evidence=IEA;IDA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0006581 "acetylcholine catabolic process" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0040012 "regulation of locomotion" evidence=IMP

GO:0034220 "ion transmembrane transport" evidence=IMP

GO:0046662 "regulation of oviposition" evidence=IMP

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=ISS;IMP

GO:0022848 "acetylcholine-gated cation channel activity" evidence=IMP

GO:0007271 "synaptic transmission, cholinergic" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0000039 nAcRalpha-96Ab "nicotinic Acetylcholine Receptor alpha 96Ab" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 4.6e-20, P = 4.6e-20
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADG + VT  TKA ++Y G V W PPAI+KSSCEIDV YFPFD+QTC +KFGSWTYDG 
Sbjct:   136 NADGEYVVTTMTKAILHYTGKVVWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGSWTYDGD 195

Query:   110 KV 111
             ++
Sbjct:   196 QI 197

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

ZFIN|ZDB-GENE-090505-3 chrna4 "cholinergic receptor, nicotinic, alpha 4" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 7.1e-20, P = 7.1e-20
 Identities = 41/62 (66%), Positives = 50/62 (80%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADG+F VT  TKA ++Y G ++WKPPAIYKSSC IDV +FPFD+Q C +KFGSWTYD  
Sbjct:   122 NADGDFAVTHLTKAQVFYNGRIKWKPPAIYKSSCSIDVTFFPFDQQNCKMKFGSWTYDRA 181

Query:   110 KV 111
             K+
Sbjct:   182 KI 183

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005892 "acetylcholine-gated channel complex" evidence=IDA

GO:0015464 "acetylcholine receptor activity" evidence=IDA

GO:0045202 "synapse" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1PFF3 CHRNA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADG+F VT  TKA ++Y G V+W PPAIYKSSC IDV +FPFD+Q C +KFGSWTYD  
Sbjct:   129 NADGDFAVTHLTKAHLFYDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKA 188

Query:   110 KV 111
             K+
Sbjct:   189 KI 190

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

MGI|MGI:87888 Chrna4 "cholinergic receptor, nicotinic, alpha polypeptide 4" [Mus musculus (taxid:10090)]

 Score = 241 (89.9 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADG+F VT  TKA ++Y G V+W PPAIYKSSC IDV +FPFD+Q C +KFGSWTYD  
Sbjct:   130 NADGDFAVTHLTKAHLFYDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKA 189

Query:   110 KV 111
             K+
Sbjct:   190 KI 191

GO:0001508 "regulation of action potential" evidence=IMP

GO:0001666 "response to hypoxia" evidence=ISO

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISO;IGI;IMP;TAS

GO:0005216 "ion channel activity" evidence=IDA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005892 "acetylcholine-gated channel complex" evidence=ISO;IDA;IPI

GO:0006281 "DNA repair" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IMP;TAS

GO:0006816 "calcium ion transport" evidence=IGI

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0007271 "synaptic transmission, cholinergic" evidence=ISO;IDA;IMP

GO:0007585 "respiratory gaseous exchange" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0008144 "drug binding" evidence=ISO

GO:0009897 "external side of plasma membrane" evidence=IDA

GO:0014059 "regulation of dopamine secretion" evidence=IMP

GO:0015464 "acetylcholine receptor activity" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IMP;TAS

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=ISO

GO:0034220 "ion transmembrane transport" evidence=IGI;IMP;IDA;TAS

GO:0035094 "response to nicotine" evidence=ISO;IGI;IMP

GO:0035095 "behavioral response to nicotine" evidence=ISO;IMP

GO:0035640 "exploration behavior" evidence=IMP

GO:0042113 "B cell activation" evidence=IMP

GO:0042166 "acetylcholine binding" evidence=ISO

GO:0042391 "regulation of membrane potential" evidence=IGI

GO:0043025 "neuronal cell body" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0050877 "neurological system process" evidence=ISO;IMP

GO:0050890 "cognition" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0051899 "membrane depolarization" evidence=IGI;IMP

GO:0060080 "regulation of inhibitory postsynaptic membrane potential" evidence=IMP

UNIPROTKB|F1LQT8 Chrna4 "Neuronal acetylcholine receptor subunit alpha-4" [Rattus norvegicus (taxid:10116)]

 Score = 241 (89.9 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 41/62 (66%), Positives = 49/62 (79%)

Query:    50 NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             NADG+F VT  TKA ++Y G V+W PPAIYKSSC IDV +FPFD+Q C +KFGSWTYD  
Sbjct:   130 NADGDFAVTHLTKAHLFYDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKA 189

Query:   110 KV 111
             K+
Sbjct:   190 KI 191

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09483	ACHA4_RAT	No assigned EC number	0.6612	0.5254	0.0984	yes	N/A
P09482	ACHA4_CHICK	No assigned EC number	0.6451	0.5254	0.0996	yes	N/A
Q5IS77	ACHA4_PANTR	No assigned EC number	0.6451	0.5254	0.0988	yes	N/A
Q9N587	ACH6_CAEEL	No assigned EC number	0.6774	0.5254	0.1235	yes	N/A
O70174	ACHA4_MOUSE	No assigned EC number	0.6612	0.5254	0.0985	yes	N/A
P43681	ACHA4_HUMAN	No assigned EC number	0.6451	0.5254	0.0988	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
pfam02931	215	pfam02931, Neur_chan_LBD, Neurotransmitter-gated i	1e-31
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	7e-18
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	8e-05
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	1e-04
pfam12569	516	pfam12569, NARP1, NMDA receptor-regulated protein	0.002
COG5116	926	COG5116, RPN2, 26S proteasome regulatory complex c	0.003
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	0.004

>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand binding domain

 Score =  110 bits (278), Expect = 1e-31
 Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 50  NADGNFEVTLA-TKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            ADG  ++T   T   +Y  G V W PPAIYKSSC +D+ YFPFD+Q C LKFGSWTY+G
Sbjct: 92  KADGIHDITTPNTNVRVYPDGTVLWSPPAIYKSSCPMDLTYFPFDQQNCSLKFGSWTYNG 151

Query: 109 FKV 111
            +V
Sbjct: 152 EEV 154

This family is the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. Length = 215

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 77.1 bits (190), Expect = 7e-18
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 49  ENADGNFEVTLATKATI--YYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTY 106
              D  F     T   +  +  G V + P      +C +D+  FPFD Q C LKF SW Y
Sbjct: 120 NEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGY 179

Query: 107 DG 108
             
Sbjct: 180 TT 181

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 21/48 (43%), Positives = 38/48 (79%)

Query: 2   KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKE 49
           K+ +K ++K E+E+K++++K   G+KKE EEEEEK+KK+ E+++  +E
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 24/51 (47%), Positives = 36/51 (70%)

Query: 2   KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENAD 52
           K   ++ EK+ +E KKE++KK    KK+ EEEEE+K+KK EEK+  +E A+
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 14/46 (30%), Positives = 34/46 (73%)

Query: 1   MKMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKN 46
             ++K  K++EE++++K+++     +K+E EEEE++KK++ +E++ 
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459

Length = 482

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%)

Query: 2   KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGNFEVTLAT 61
           K  KK  EK EK+R++E+++K+  +   G+++EE+++++ E+K+  KE  +   E     
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKK-KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468

Query: 62  KAT 64
           +  
Sbjct: 469 EEE 471

Length = 482

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 2   KMKKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKK 45
           K+ KKR+E  EK +++ EQK    E++E E+E+EK++++  E++
Sbjct: 576 KLAKKREEAVEKAKREAEQK--AREEREREKEKEKERERERERE 617

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 12  EKERKKEEQKKEVGEKKEGEEEEEK--KKKKVEEKKNNKENADGN 54
             ERKK  +K+   EKK  +EE EK   KKK E      +  DG 
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. The family is found in association with pfam07719, pfam00515. There is a single completely conserved residue L that may be functionally important. NARP1 is the mammalian homologue of a yeast N-terminal acetyltransferase that regulates entry into the G(0) phase of the cell cycle. Length = 516

>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 4   KKKRKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKENADGN 54
           K   + K++ + K    K+   E    E E E+   K  E+K     A  N
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILN 842

Length = 926

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 34.9 bits (81), Expect = 0.004
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 8   KEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKKVEEKKNNKEN 50
           K K   E+K  +  K+V  K+  ++E+EK+K KV+++  + +N
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG3646|consensus	486		99.8
TIGR00860	459	LIC Cation transporter family protein. selective w	99.7
KOG3645|consensus	449		99.69
PF02931	217	Neur_chan_LBD: Neurotransmitter-gated ion-channel	99.63
KOG3643|consensus	459		99.51
KOG3644|consensus	457		99.43
KOG3642|consensus	466		99.14

>KOG3646|consensus

Probab=99.80  E-value=3.4e-20  Score=156.68  Aligned_cols=76  Identities=43%  Similarity=0.861  Sum_probs=73.2

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      .+||.+|||+|.+|+.+..+|++++++|.|.|.||....++|.+|++.||||.|.|.+.||||+|++..++|.+++
T Consensus       110 kPDVLLYNSade~FDsTy~tN~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~lDL~~~~  185 (486)
T KOG3646|consen  110 KPDVLLYNSADEQFDSTYKTNYVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGILLDLRIDD  185 (486)
T ss_pred             CCceeccccccccCCCcceeeEEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcceeeeeeecc
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999988654

>TIGR00860 LIC Cation transporter family protein

Probab=99.70  E-value=1.4e-17  Score=140.37  Aligned_cols=77  Identities=26%  Similarity=0.418  Sum_probs=68.3

Q ss_pred             hhhhhhhhhcCCCCCceeeeeeEEEEe--ccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         41 VEEKKNNKENADGNFEVTLATKATIYY--QGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        41 ~~~~~~~yNs~d~~~~~~~~~~v~I~~--dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      --+||.+||++++.++....+++.|.+  ||+|.|.+|..+++.|++|+++||||+|+|.|.|+||+|+++++++.+.+
T Consensus       112 W~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~~~~  190 (459)
T TIGR00860       112 WVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKE  190 (459)
T ss_pred             ccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEhhhccccceEEEEECC
Confidence            357999999999887766556666655  99999999999999999999999999999999999999999999997643

selective while glycine receptors are anion selective).

>KOG3645|consensus

Probab=99.69  E-value=2.8e-17  Score=138.40  Aligned_cols=74  Identities=55%  Similarity=0.933  Sum_probs=69.4

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEE-EEE
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVP-GSV  115 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~-Ls~  115 (118)
                      -++|.+||++++++.....+++.|.++|.|.|.+|..+.++|++|+++||||.|+|.+.|+||+|++.+++ +..
T Consensus       113 ~Pdi~l~N~~~~~~~~~~~~~v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~~~  187 (449)
T KOG3645|consen  113 LPDIVLYNNADGDFEVEDLTNVLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGLDL  187 (449)
T ss_pred             cCcEEEEecccccccccccceEEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEeccccCccccceeee
Confidence            47899999999999998888899999999999999999999999999999999999999999999999876 543

>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=99.63  E-value=4.6e-16  Score=116.71  Aligned_cols=76  Identities=32%  Similarity=0.632  Sum_probs=66.1

Q ss_pred             hhhhhhhhcCCCCCcee-eeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVT-LATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~-~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.++|+..+..... ....+.|.++|+|.|.+++.+++.|+|++..||||+|.|.|.|+||+|+..+|.|.+..
T Consensus        84 ~P~l~~~n~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~  160 (217)
T PF02931_consen   84 TPDLYFYNSVSGSFEITEPNSNVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFGSWSYNSEEVQLKWEN  160 (217)
T ss_dssp             ---EEETTBSSSEEECS-SSEEEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEEEESSSSTTTEEEEESC
T ss_pred             ecccccccccccceecccccccccccccchheeeecccccccccccccccccccceeEEEEecccccccceeeeecc
Confidence            46889999766555544 67899999999999999999999999999999999999999999999999999998764

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....

>KOG3643|consensus

Probab=99.51  E-value=2.2e-14  Score=121.11  Aligned_cols=77  Identities=18%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             hhhhhhhhcCCCCCce--eeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcCC
Q psy16246         42 EEKKNNKENADGNFEV--TLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNGA  118 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~--~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~~  118 (118)
                      -+|-++-|+...-++.  +.+..++|.+||+|+|..+++.+..|+|||++||+|+|.|.|.+.||+|+.++|.+.|.+|
T Consensus       117 vPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~DI~y~W~~g  195 (459)
T KOG3643|consen  117 VPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDDIEYYWSKG  195 (459)
T ss_pred             cCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEecccccccEEEEEcCC
Confidence            3567788877766664  3578899999999999999999999999999999999999999999999999999998864

>KOG3644|consensus

Probab=99.43  E-value=1.6e-13  Score=116.64  Aligned_cols=76  Identities=20%  Similarity=0.316  Sum_probs=68.5

Q ss_pred             hhhhhhhhcCCCCCcee--eeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVT--LATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~--~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      .+|..+=|+....++.+  .+..+.|++||+|++..|+.++.+|+|++.+||+|+|.|.+.+.||+|+.++|.+.+.+
T Consensus       127 ~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn~~~v~~~W~~  204 (457)
T KOG3644|consen  127 TPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYNTDDVRLEWKE  204 (457)
T ss_pred             cCceeeecccceeeecCCCCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccccceEEEEecC
Confidence            46677778877777754  57789999999999999999999999999999999999999999999999999999875

>KOG3642|consensus

Probab=99.14  E-value=3.6e-11  Score=102.10  Aligned_cols=75  Identities=24%  Similarity=0.396  Sum_probs=66.1

Q ss_pred             hhhhhhhcCCCCCce--eeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         43 EKKNNKENADGNFEV--TLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        43 ~~~~~yNs~d~~~~~--~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      +|-+.+|+..+..+.  +++..++|..||+|+|..++++.+.|+|++..||||.|.|.+.|||++|...++...+.+
T Consensus       126 PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~evvY~W~~  202 (466)
T KOG3642|consen  126 PDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYAYPGSEVVYKWKK  202 (466)
T ss_pred             CCcccccCcccceeeccCCCceEEEeECCcceEEEEEeecccCcchhhcCCCCcccCcceecccCcCCCCEEEEEec
Confidence            455678887766653  467789999999999999999999999999999999999999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
4aq5_A	461	Gating Movement In Acetylcholine Receptor Analysed		2e-17
2bg9_A	370	Refined Structure Of The Nicotinic Acetylcholine Re		2e-17
2qc1_B	212	Crystal Structure Of The Extracellular Domain Of Th		8e-15
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		2e-14
2bg9_B	370	Refined Structure Of The Nicotinic Acetylcholine Re		3e-14
4aq5_E	488	Gating Movement In Acetylcholine Receptor Analysed		7e-13
2bg9_E	370	Refined Structure Of The Nicotinic Acetylcholine Re		5e-12
4aq5_C	522	Gating Movement In Acetylcholine Receptor Analysed		6e-11
2bg9_C	369	Refined Structure Of The Nicotinic Acetylcholine Re		7e-11

>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 461

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADG+F +   TK  + Y G + W PPAI+KS CEI V +FPFD+Q C +K G WTYDG 
Sbjct: 119 NADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGT 178
Query: 110 KV 111
           KV
Sbjct: 179 KV 180

>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution. Length = 370

Iteration: 1
 Score = 84.3 bits (207), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADG+F +   TK  + Y G + W PPAI+KS CEI V +FPFD+Q C +K G WTYDG 
Sbjct: 95  NADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGT 154
Query: 110 KV 111
           KV
Sbjct: 155 KV 156

>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The Nicotinic Acetylcholine Receptor 1 Subunit Bound To Alpha-Bungarotoxin At 1.9 A Resolution Length = 212

Iteration: 1
 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 42/62 (67%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NADG+F +   TK  + Y G + W PPAI+KS CEI V +FPFDEQ C +K G+ TYDG 
Sbjct: 96  NADGDFAIVKFTKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGS 155
Query: 110 KV 111
            V
Sbjct: 156 AV 157

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           N DG+FE+TL     + + G V W P AIY+SSC I V YFPFD Q C + F S+TYD  
Sbjct: 119 NNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTS 178
Query: 110 KV 111
           +V
Sbjct: 179 EV 180

>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           N DG+FE+TL     + + G V W P AIY+SSC I V YFPFD Q C + F S+TYD  
Sbjct: 95  NNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTS 154
Query: 110 KV 111
           +V
Sbjct: 155 EV 156

>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 488

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/62 (50%), Positives = 37/62 (59%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           N DG FEV       +Y  G + W PPAIY+S+C I V YFPFD Q C L F S TY+  
Sbjct: 94  NVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAH 153
Query: 110 KV 111
           +V
Sbjct: 154 EV 155

>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 370

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 37/62 (59%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           N DG FEV       +Y  G + W PPAIY+S+C I V YFPFD Q C L F S TY+  
Sbjct: 94  NVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAH 153
Query: 110 KV 111
           +V
Sbjct: 154 EV 155

>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 522

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           N DG + V       +   G V W PPAI++SSC I+V YFPFD Q C LKF +  Y+  
Sbjct: 118 NNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNAN 177
Query: 110 KV 111
           ++
Sbjct: 178 EI 179

>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor At 4a Resolution Length = 369

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           N DG + V       +   G V W PPAI++SSC I+V YFPFD Q C LKF +  Y+  
Sbjct: 97  NNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNAN 156
Query: 110 KV 111
           ++
Sbjct: 157 EI 158

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	1e-37
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	9e-37
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	2e-36
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	4e-36
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	8e-36
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	2e-35
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	3e-35
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	9e-35
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	8e-34
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	8e-31
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	4e-29
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	8e-29
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	3e-28
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	7e-28
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	1e-27
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	2e-26
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	2e-24
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	5e-24

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score =  129 bits (325), Expect = 1e-37
 Identities = 35/63 (55%), Positives = 43/63 (68%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            NADG+F +   TK  + Y G + W PPAI+KS CEI V +FPFD+Q C +K G WTYDG
Sbjct: 94  NNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDG 153

Query: 109 FKV 111
            KV
Sbjct: 154 TKV 156

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B Length = 212

 Score =  122 bits (309), Expect = 9e-37
 Identities = 34/63 (53%), Positives = 42/63 (66%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            NADG+F +   TK  + Y G + W PPAI+KS CEI V +FPFDEQ C +K G+ TYDG
Sbjct: 95  NNADGDFAIVKFTKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDG 154

Query: 109 FKV 111
             V
Sbjct: 155 SAV 157

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score =  128 bits (322), Expect = 2e-36
 Identities = 35/63 (55%), Positives = 43/63 (68%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            NADG+F +   TK  + Y G + W PPAI+KS CEI V +FPFD+Q C +K G WTYDG
Sbjct: 118 NNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDG 177

Query: 109 FKV 111
            KV
Sbjct: 178 TKV 180

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score =  125 bits (315), Expect = 4e-36
 Identities = 31/63 (49%), Positives = 37/63 (58%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            N DG FEV       +Y  G + W PPAIY+S+C I V YFPFD Q C L F S TY+ 
Sbjct: 93  NNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNA 152

Query: 109 FKV 111
            +V
Sbjct: 153 HEV 155

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score =  124 bits (313), Expect = 8e-36
 Identities = 27/63 (42%), Positives = 36/63 (57%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            N DG + V       +   G V W PPAI++SSC I+V YFPFD Q C LKF +  Y+ 
Sbjct: 96  NNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNA 155

Query: 109 FKV 111
            ++
Sbjct: 156 NEI 158

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score =  123 bits (310), Expect = 2e-35
 Identities = 32/63 (50%), Positives = 40/63 (63%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            N DG+FE+TL     + + G V W P AIY+SSC I V YFPFD Q C + F S+TYD 
Sbjct: 94  NNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDT 153

Query: 109 FKV 111
            +V
Sbjct: 154 SEV 156

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score =  125 bits (314), Expect = 3e-35
 Identities = 32/64 (50%), Positives = 40/64 (62%)

Query: 48  KENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYD 107
             N DG+FE+TL     + + G V W P AIY+SSC I V YFPFD Q C + F S+TYD
Sbjct: 117 MNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYD 176

Query: 108 GFKV 111
             +V
Sbjct: 177 TSEV 180

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score =  124 bits (311), Expect = 9e-35
 Identities = 27/63 (42%), Positives = 36/63 (57%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            N DG + V       +   G V W PPAI++SSC I+V YFPFD Q C LKF +  Y+ 
Sbjct: 117 NNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNA 176

Query: 109 FKV 111
            ++
Sbjct: 177 NEI 179

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score =  121 bits (303), Expect = 8e-34
 Identities = 31/64 (48%), Positives = 37/64 (57%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            N DG FEV       +Y  G + W PPAIY+S+C I V YFPFD Q C L F S TY+ 
Sbjct: 93  NNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNA 152

Query: 109 FKVP 112
            +V 
Sbjct: 153 HEVN 156

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score =  110 bits (277), Expect = 8e-31
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             +           ++   G V++      +    +D   +PFD QT  +     + D  
Sbjct: 85  VENARD--ADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTR 142

Query: 110 KV 111
            +
Sbjct: 143 NI 144

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ... Length = 228

 Score =  104 bits (260), Expect = 4e-29
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           ++    +V     A + + G V + P       C+        +  TC +KFGSW Y GF
Sbjct: 103 SSTRPVQVLSPQIAVVTHDGSVMFIPAQRLSFMCDPTG-VDSEEGATCAVKFGSWVYSGF 161

Query: 110 KV 111
           ++
Sbjct: 162 EI 163

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* Length = 230

 Score =  103 bits (257), Expect = 8e-29
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 49  ENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDG 108
            + D +  +   T+A ++  G V W PPA+ K  C         D  +C  +FGSW Y  
Sbjct: 103 NSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVSQ-----DDVDSCHFQFGSWVYSV 157

Query: 109 FKV 111
            +V
Sbjct: 158 DEV 160

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A* Length = 204

 Score =  101 bits (253), Expect = 3e-28
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NA    EV     A +   G V++ P    + SC++          TC LKFGSWT+   
Sbjct: 92  NAISKPEVLTPQLALVNSSGHVQYLPSIRQRFSCDVSGVDTE-SGATCKLKFGSWTHHSR 150

Query: 110 KV 111
           ++
Sbjct: 151 EL 152

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus} Length = 203

 Score =  100 bits (250), Expect = 7e-28
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCE-IDVEYFPFDEQTCVLKFGSWTYDG 108
           NA    E+  A +  +   G V + P    + +C+ I+V+  P    TC +K GSWT+D 
Sbjct: 89  NAIAAPELLSADRVVVSKDGSVIYVPSQRVRFTCDLINVDTEPG--ATCRIKVGSWTHDN 146

Query: 109 FKV 111
            + 
Sbjct: 147 KQF 149

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A* Length = 211

 Score = 99.6 bits (248), Expect = 1e-27
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
           NA    EV     A +   G V + P    + SC++          TC +K GSWT+   
Sbjct: 91  NAISKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSR 149

Query: 110 KV 111
           ++
Sbjct: 150 EI 151

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus} Length = 201

 Score = 96.2 bits (240), Expect = 2e-26
 Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 2/62 (3%)

Query: 50  NADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGF 109
             +           ++   G V++      +    +D      D QT  +     + D  
Sbjct: 81  VENARD--ADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTR 138

Query: 110 KV 111
            +
Sbjct: 139 NI 140

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 93.6 bits (233), Expect = 2e-24
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 46  NNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWT 105
           N   + D     T   +  ++  G V +    +   S ++D   FPFD Q  VL+   ++
Sbjct: 80  NVVGSPD-----TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFS 134

Query: 106 YDGFKV 111
           Y+  ++
Sbjct: 135 YNNQQL 140

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A* Length = 347

 Score = 93.0 bits (231), Expect = 5e-24
 Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 50  NADGNFEVTLATKA--TIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYD 107
                            I+  G V +        SC + ++Y+P D Q C +   S+ Y 
Sbjct: 95  EKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYT 154

Query: 108 GFKV 111
              +
Sbjct: 155 TKDI 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2qc1_B	212	Acetylcholine receptor subunit alpha; nicotinic ac	99.83
4aod_A	205	Acetylcholine-binding protein type 1; ligand gated	99.8
4aoe_A	205	Acetylcholine-binding protein type 2; ligand gated	99.79
3igq_A	201	GLR4197 protein; plgic Cys-loop, membrane protein,	99.79
3sq6_A	204	ACHBP, neuronal acetylcholine receptor subunit alp	99.78
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	99.76
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	99.75
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	99.75
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	99.75
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	99.75
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	99.75
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.74
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.74
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.74
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	99.73
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.73
2bj0_A	203	Acetylcholine-binding protein; 3D-structure, glyco	99.72
4afh_A	230	ACHBP; acetylcholine-binding protein, nicotinic re	99.69
1uw6_A	211	Acetylcholine-binding protein; pentamer, IGG fold,	99.64
2wn9_A	228	Soluble acetylcholine receptor; 4-0H-DMXBA, acetyl	99.64

>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B

Probab=99.83  E-value=4.2e-21  Score=145.20  Aligned_cols=76  Identities=45%  Similarity=0.766  Sum_probs=71.3

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||++++.++....+.++|++||+|.|.+|++++++|+|++++||||+|.|.|.|+||+|++.+|+|.+.+
T Consensus        88 ~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~  163 (212)
T 2qc1_B           88 RPDVVLYNNADGDFAIVKFTKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPES  163 (212)
T ss_dssp             CCCEEECCBTTTSSCEECCCCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESC
T ss_pred             CCceeccccccccccccceeeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEecc
Confidence            4789999999998887767899999999999999999999999999999999999999999999999999998754

>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}

Probab=99.80  E-value=6.5e-20  Score=139.28  Aligned_cols=74  Identities=23%  Similarity=0.255  Sum_probs=67.4

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||+++. +.....+.++|++||+|.|.+|+.+.++|+|++..|||| |.|.|.||||+|++.+|+|.+++
T Consensus        86 ~PDi~l~N~~~~-~~~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~  159 (205)
T 4aod_A           86 TPDIFIFDSVGA-PEIFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNA  159 (205)
T ss_dssp             CCCEEETTBSSC-CEECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSS
T ss_pred             cCCEEEEccccc-ceeecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEECC
Confidence            478999999975 445567889999999999999999999999999999999 99999999999999999998754

>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}

Probab=99.79  E-value=7.8e-20  Score=139.11  Aligned_cols=74  Identities=20%  Similarity=0.330  Sum_probs=66.2

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||+++. .....++.++|++||+|.|.+|++++++|+|+ ..||||+|.|.|.||||+|++.+|+|...+
T Consensus        86 ~PDi~l~N~~~~-~~~~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~~  159 (205)
T 4aoe_A           86 LPHIEVYNSIGK-PGIHSDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDESQ  159 (205)
T ss_dssp             CCCCEETTBSSC-CEECSCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECSS
T ss_pred             cccEEEeccccc-cccccceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEecCc
Confidence            478999999865 34456788999999999999999999999999 789999999999999999999999997543

>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}

Probab=99.79  E-value=7e-20  Score=138.44  Aligned_cols=74  Identities=11%  Similarity=-0.036  Sum_probs=61.9

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||+++.  ....++.++|++||+|.|.+|+.++++|+|++++||||+|.|.|.|+||+|++.+|+|.+.+
T Consensus        73 ~PDi~l~N~~~~--~~~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~  146 (201)
T 3igq_A           73 IPEIRFVNVENA--RDADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL  146 (201)
T ss_dssp             CCCEEESSBSSS--CEEEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECG
T ss_pred             ccCEEEEccccc--ccccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecC
Confidence            478999999765  34678999999999999999999999999999999999999999999999999999998753

>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*

Probab=99.78  E-value=1.2e-19  Score=136.93  Aligned_cols=71  Identities=21%  Similarity=0.279  Sum_probs=65.2

Q ss_pred             hhhhhhhhcCC--CCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246         42 EEKKNNKENAD--GNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN  116 (118)
Q Consensus        42 ~~~~~~yNs~d--~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~  116 (118)
                      -++|.+||+++  +.++.+   +++|++||+|.|.+|++++++|+|++ .||||+|.|.|.|+||+|++.+|+|.+.
T Consensus        85 ~PDi~~~N~~~~~~~~~~~---~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~  157 (204)
T 3sq6_A           85 VPDLAAYNAISKPEVLTPQ---LALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQ  157 (204)
T ss_dssp             CCCEEETTBSSCCEECSCC---EEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECC
T ss_pred             CCCEEeEcccccCCccccc---EEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEec
Confidence            47899999999  666543   99999999999999999999999999 9999999999999999999999999754

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.76  E-value=4.6e-19  Score=143.54  Aligned_cols=76  Identities=47%  Similarity=0.819  Sum_probs=70.7

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -+||.+||+++++++....++++|++||+|.|.+|+.++++|+||+++||||+|+|.|.|+||+|++.++++.+.+
T Consensus        87 ~PDi~~~N~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~  162 (370)
T 2bg9_A           87 LPDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPES  162 (370)
T ss_dssp             CCCEEETTCCCSCEESCSSCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCC
T ss_pred             CCcEeccccccccccccccceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecC
Confidence            4789999999988877667899999999999999999999999999999999999999999999999999987643

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.75  E-value=2.9e-19  Score=144.69  Aligned_cols=76  Identities=41%  Similarity=0.735  Sum_probs=71.1

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||+++++++....+++.|++||+|.|.+|+.++++|+|++++||||+|+|.|.|+||+|++.++++.+.+
T Consensus        86 ~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~  161 (370)
T 2bg9_E           86 LPDVVLENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSA  161 (370)
T ss_dssp             CCCEEESSSCCSCCBSSSSCCCEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCC
T ss_pred             CCCEeeccccCCcccccccccEEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecC
Confidence            4789999999998887777889999999999999999999999999999999999999999999999999998754

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=99.75  E-value=6.6e-19  Score=139.58  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=69.7

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -+||.+||++++.+  ..++.++|++||+|.|.+|+.+++.|+||+++||||+|+|.+.|+||+|+++++++.+++
T Consensus        73 ~Pdi~l~N~~~~~~--~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~  146 (322)
T 3rqw_A           73 VPALEFINVVGSPD--TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQ  146 (322)
T ss_dssp             CCCEEETTBSSCCE--EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEE
T ss_pred             CCcEEEEcccCccc--ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECC
Confidence            47899999999888  778999999999999999999999999999999999999999999999999999998753

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.75  E-value=5.9e-19  Score=143.09  Aligned_cols=74  Identities=43%  Similarity=0.734  Sum_probs=69.8

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEE
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSV  115 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~  115 (118)
                      -+||.+||+++++++....++++|++||+|.|.+|+.++++|+|++++||||+|+|.|.|+||+|++.++++.+
T Consensus        87 ~PDi~~~N~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~  160 (370)
T 2bg9_B           87 QPDIVLMNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQH  160 (370)
T ss_dssp             CCCEEESSCCCSCEESSSSCEEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEEC
T ss_pred             CCCccccccccccccccccceEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEe
Confidence            37899999999988776678999999999999999999999999999999999999999999999999999987

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=99.75  E-value=6.6e-19  Score=142.76  Aligned_cols=74  Identities=36%  Similarity=0.701  Sum_probs=69.7

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEE
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSV  115 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~  115 (118)
                      -+||.+||+++++++....++++|++||+|.|.+|+.++++|+||+++||||+|+|.|.|+||+|++.++++.+
T Consensus        89 ~PDi~~~N~~~~~~~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~  162 (369)
T 2bg9_C           89 IPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDL  162 (369)
T ss_dssp             CCCEEETTTCSSCCBSSSSCCEEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEEC
T ss_pred             CCcEeccccccccccccccccEEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEE
Confidence            47899999999988877778899999999999999999999999999999999999999999999999999875

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=99.75  E-value=1.1e-18  Score=138.31  Aligned_cols=73  Identities=14%  Similarity=0.113  Sum_probs=68.6

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN  116 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~  116 (118)
                      -+||.+||++++.  ...++.++|++||+|.|.+|+.++++|+||+++||||+|+|.|.|+||+|++.++++.+.
T Consensus        77 ~PDi~l~N~~~~~--~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~  149 (321)
T 3tlw_A           77 IPEIRFVNVENAR--DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVD  149 (321)
T ss_dssp             CCCEEESSBSSCC--EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEEC
T ss_pred             cCcEEeecccccc--cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEc
Confidence            4689999999987  667889999999999999999999999999999999999999999999999999999875

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.74  E-value=9.8e-19  Score=146.25  Aligned_cols=75  Identities=48%  Similarity=0.828  Sum_probs=70.6

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN  116 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~  116 (118)
                      -+||.+||+++++++....++++|++||+|.|.+|++++++|+|++++||||+|+|+|.|+||+|++.++++.+.
T Consensus       111 ~PDi~l~N~~d~~~~~~~~~~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~  185 (461)
T 4aq5_A          111 LPDLVLYNNADGDFAIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPE  185 (461)
T ss_dssp             CCCEEESSCCCSCCTTCSSCEEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECC
T ss_pred             CCceeeecccccccccccccceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEec
Confidence            478999999999988777789999999999999999999999999999999999999999999999999998754

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.74  E-value=9.5e-19  Score=148.26  Aligned_cols=75  Identities=36%  Similarity=0.682  Sum_probs=70.4

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN  116 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~  116 (118)
                      -+||.+||+++++++....+++.|++||+|.|.+|++++++|+|++++||||+|+|.|.|+||+|++.+|++.+.
T Consensus       110 ~PDi~l~N~~d~~~~~~~~~nv~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~  184 (522)
T 4aq5_C          110 IPDIVLQNNNDGQYNVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLM  184 (522)
T ss_dssp             CCCEEETTTCSSCCBSCSSCCEEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC-
T ss_pred             CCcEeccccccCCccccccceEEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEec
Confidence            478999999999988877889999999999999999999999999999999999999999999999999998764

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.74  E-value=8.5e-19  Score=147.57  Aligned_cols=75  Identities=43%  Similarity=0.723  Sum_probs=70.7

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEc
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVN  116 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~  116 (118)
                      -+||.+||+++++++....+++.|++||+|.|.+|++++++|+||+++||||+|+|+|.|+||+|++.+|++.+.
T Consensus       111 ~PDi~l~N~~d~~~~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~  185 (493)
T 4aq5_B          111 QPDIVLMNNNDGSFEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHA  185 (493)
T ss_dssp             CCCCEESSCCCSCEESSSSSCEEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECC
T ss_pred             cCcEEEecccccccccccccceEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEec
Confidence            378999999999888777789999999999999999999999999999999999999999999999999999874

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=99.73  E-value=1.1e-18  Score=139.79  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             hhhhhhhhcCCCCCcee--eeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVT--LATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~--~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -+||.+||++++.++..  .+..++|++||+|.|.+|+.++++|+|++++||||+|+|.|.|+||+|++.++++.+.+
T Consensus        87 ~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~  164 (347)
T 3rhw_A           87 MPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKE  164 (347)
T ss_dssp             CCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECS
T ss_pred             cCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecC
Confidence            47899999998776643  35567899999999999999999999999999999999999999999999999998754

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.73  E-value=6.9e-19  Score=147.94  Aligned_cols=76  Identities=41%  Similarity=0.735  Sum_probs=71.2

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -+||.+||+++++++....+++.|++||+|.|.+|++++++|+|++++||||+|+|.|.|+||+|++.+|++.+.+
T Consensus        86 ~PDi~l~N~~d~~~~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~  161 (488)
T 4aq5_E           86 LPDVVLENNVDGQFEVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSA  161 (488)
T ss_dssp             CCCEECSSSCCSCCBSCSSSCCCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCC
T ss_pred             CCceehhccccccccccccccEEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEecc
Confidence            4789999999999887777889999999999999999999999999999999999999999999999999987653

>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}

Probab=99.72  E-value=6.2e-18  Score=127.00  Aligned_cols=72  Identities=19%  Similarity=0.310  Sum_probs=67.0

Q ss_pred             hhhhhhhhc-CCCCCceeeeeeEEEEeccEEEEeCCeeEEeeccc-ccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKEN-ADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEI-DVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs-~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~m-dl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||+ +++.++..  +.++|++||+|.|.+|+.++++|+| ++++  ||+|.|.|.|+||+|++.+|+|.+.+
T Consensus        82 ~PDi~~~N~~~~~~~~~~--~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~  155 (203)
T 2bj0_A           82 TPDLSFYNAIAAPELLSA--DRVVVSKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGE  155 (203)
T ss_dssp             CCCEEETTCSSCCEECSC--CEEEEETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECT
T ss_pred             CCCccccccccccccccc--eEEEEeCCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEecC
Confidence            478999999 99877766  8999999999999999999999999 9998  99999999999999999999998754

>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*

Probab=99.69  E-value=7.5e-18  Score=129.83  Aligned_cols=71  Identities=27%  Similarity=0.466  Sum_probs=66.1

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||++++.++.+..++++|++||+|.|.+|++++++|+|     |||+|.|.|.|+||+|++.+|+|.+.+
T Consensus        96 ~PDi~l~N~~~~~~~~~~~~~v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~  166 (230)
T 4afh_A           96 TPDIKLFNSVDLDMTLDRTTQAIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMD  166 (230)
T ss_dssp             CCCEEETTCSSSSCEECTTSCEEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGG
T ss_pred             CCcEEEEecccccccccccceEEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccccccCceEEEEECC
Confidence            47899999999988876678999999999999999999999999     999999999999999999999998753

>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*

Probab=99.64  E-value=2.4e-16  Score=118.91  Aligned_cols=71  Identities=24%  Similarity=0.350  Sum_probs=65.5

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecc---cccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCE---IDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~---mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||++++. ..+..+.++|++||+|.|.+|++++++|+   |+++    |+|.|.|.|+||+|++.+|+|.+.+
T Consensus        84 ~PDi~~~N~~~~~-~~~~~~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~  157 (211)
T 1uw6_A           84 VPDLAAYNAISKP-EVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTT  157 (211)
T ss_dssp             CCCEEETTBCSCC-EECSCCEEEEETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECC
T ss_pred             CCCEeeecccccc-ccceeeEEEEeCCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEEEEecc
Confidence            4789999999987 65556999999999999999999999999   9998    9999999999999999999998754

>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...

Probab=99.64  E-value=1.5e-16  Score=121.82  Aligned_cols=71  Identities=24%  Similarity=0.466  Sum_probs=66.4

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecc---cccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCE---IDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~---mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||++++.++.+ ++.++|++||+|.|.+|++++++|+   |+++    |+|.|.|.|+||+|++.+|++.+.+
T Consensus        96 ~PDi~l~N~~~~~~~~~-~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~  169 (228)
T 2wn9_A           96 TPDITAYSSTRPVQVLS-PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDT  169 (228)
T ss_dssp             CCCEEESSBSSCCEECS-CCEEEEETEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSC
T ss_pred             CCceecccccccccccc-cceEEEeCCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecC
Confidence            47899999999988776 8999999999999999999999999   9998    9999999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1uw6a_	208	b.96.1.1 (A:) Acetylcholine binding protein (ACHBP	3e-12
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	0.004

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]} Length = 208

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

 Score = 58.2 bits (140), Expect = 3e-12
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 53  GNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVP 112
              EV     A +   G V + P    + SC++          TC +K GSWT+   ++ 
Sbjct: 94  SKPEVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHHSREIS 152

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 7  RKEKEEKERKKEEQKKEVGEKKEGEEEEEKKKKK----VEEKKNN 47
          R+  EE  R  E+Q  E+   KE   +   ++K+    V + + N
Sbjct: 2  RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGN 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1uw6a_	208	Acetylcholine binding protein (ACHBP) {Great pond	99.66

>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great pond snail (Lymnaea stagnalis) [TaxId: 6523]}

class: All beta proteins
fold: Nicotinic receptor ligand binding domain-like
superfamily: Nicotinic receptor ligand binding domain-like
family: Nicotinic receptor ligand binding domain-like
domain: Acetylcholine binding protein (ACHBP)
species: Great pond snail (Lymnaea stagnalis) [TaxId: 6523]

Probab=99.66  E-value=5.5e-17  Score=121.16  Aligned_cols=74  Identities=20%  Similarity=0.253  Sum_probs=64.7

Q ss_pred             hhhhhhhhcCCCCCceeeeeeEEEEeccEEEEeCCeeEEeecccccccCCCCcceeeeEEecccccCCeEEEEEcC
Q psy16246         42 EEKKNNKENADGNFEVTLATKATIYYQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYDGFKVPGSVNG  117 (118)
Q Consensus        42 ~~~~~~yNs~d~~~~~~~~~~v~I~~dGtV~~~~p~~~~~~C~mdl~~FPfD~Q~C~L~fgSwsys~~eI~Ls~~~  117 (118)
                      -++|.+||+++.. .....+.+.|++||+|.|.+|+.++++|.|++..|| |+|.|.|.||||+|++.+|+|...+
T Consensus        84 ~PDi~l~n~~~~~-~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~~~~~f~-d~Q~C~l~fgSw~y~~~~i~l~~~~  157 (208)
T d1uw6a_          84 VPDLAAYNAISKP-EVLTPQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTT  157 (208)
T ss_dssp             CCCEEETTBCSCC-EECSCCEEEEETTSEEEECCEEEEEEECCCTTTTSS-SCEEEEEEEEESSCCTTTEEEEECC
T ss_pred             cccEEEEEEcccc-ccccceEEEEEeCCcEEEEecEEEEEeccccccCCc-ceEEEEEEEeCceeccceEEEeecc
Confidence            3689999998754 344567899999999999999999999999987777 8999999999999999999998754