Psyllid ID: psy1628

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
VHVPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEcccccHHHHcccccccccEEEEEccccccccEEEccHHHHHHHHHHHHHHccEEEEcccccccccccccHHHHHHccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccccEcccccHHHHHHHHHHHcccEEEEEEEEcccccccccEEHEEcccccccccEEEEccc
Coil and Loop (DISEMBL)
VHVPVLTECIIGRYIILLAVVHLFFERIFLsaslypflflypcaffaeslqscggqiippanYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFqlqgddiipdiVTVVWN
Flexible Loop (DISEMBL)
VHVPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFqlqgddiipdIVTVVWN
Low Complexity Region (SEG)
VHVPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN
Disordered region (IsUnstruct)
**VPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVW*
Disordered Region (DISOPRED)
*HVPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN
Disordered Region (DISEMBL)
VHVPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN
Disordered Region (DISPRO)
VHVPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN
Transmembrane Helix (TMHMM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VHVPVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q7SY54	492	Ethanolamine-phosphate ph	yes	N/A	0.596	0.138	0.720	1e-26
Q5E9S4	497	Ethanolamine-phosphate ph	yes	N/A	0.596	0.136	0.691	6e-25
Q6DEB1	509	Ethanolamine-phosphate ph	N/A	N/A	0.596	0.133	0.705	6e-25
Q9VU95	494	Alanine--glyoxylate amino	yes	N/A	0.578	0.133	0.720	7e-25
Q8TBG4	499	Ethanolamine-phosphate ph	no	N/A	0.596	0.136	0.676	2e-24
Q8BWU8	499	Ethanolamine-phosphate ph	yes	N/A	0.596	0.136	0.661	4e-24
Q8IUZ5	450	5-phosphohydroxy-L-lysine	no	N/A	0.605	0.153	0.724	6e-24
Q8R1K4	467	5-phosphohydroxy-L-lysine	no	N/A	0.596	0.145	0.661	2e-23
P91408	467	Alanine--glyoxylate amino	yes	N/A	0.596	0.145	0.588	1e-20
Q940M2	476	Alanine--glyoxylate amino	yes	N/A	0.578	0.138	0.558	1e-17

>sp|Q7SY54|AT2L1_DANRE Ethanolamine-phosphate phospho-lyase OS=Danio rerio GN=agxt2l1 PE=2 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/68 (72%), Positives = 59/68 (86%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AESLQSCGGQ+IPP  Y ++V +HVR AGG+ +ADEVQVGFGRVGTH+W FQLQG+D
Sbjct: 211 AFIAESLQSCGGQVIPPMGYFQKVAQHVRNAGGIFIADEVQVGFGRVGTHFWGFQLQGED 270

Query: 104 IIPDIVTV 111
            +PDIVT+
Sbjct: 271 FVPDIVTM 278

Danio rerio (taxid: 7955)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp|Q5E9S4|AT2L1_BOVIN Ethanolamine-phosphate phospho-lyase OS=Bos taurus GN=AGXT2L1 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/68 (69%), Positives = 59/68 (86%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AES+QSCGGQIIPPA Y ++V ++VR AGGV +ADEVQVGFGRVG H+W+FQ+ G+D
Sbjct: 209 AFIAESMQSCGGQIIPPAGYFQKVAEYVRGAGGVFIADEVQVGFGRVGKHFWSFQMFGED 268

Query: 104 IIPDIVTV 111
            +PDIVT+
Sbjct: 269 FVPDIVTM 276

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q6DEB1|AT2L1_XENLA Ethanolamine-phosphate phospho-lyase OS=Xenopus laevis GN=agxt2l1 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/68 (70%), Positives = 58/68 (85%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AES+QSCGGQIIPPA Y ++V + V  AGGV +ADEVQVGFGRVG H+W+FQLQG+D
Sbjct: 210 AFIAESMQSCGGQIIPPAGYFQKVSEFVHKAGGVFIADEVQVGFGRVGKHFWSFQLQGED 269

Query: 104 IIPDIVTV 111
            +PDIVT+
Sbjct: 270 FLPDIVTM 277

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q9VU95|AGT2L_DROME Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=2 SV=2

 Score =  112 bits (280), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 2/68 (2%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AESLQSCGGQI+PPA Y + VY  VR+AGGVC+ADEVQVGFGRVG+H+WAF+ Q  +
Sbjct: 224 AFIAESLQSCGGQILPPAGYFQAVYDAVRSAGGVCIADEVQVGFGRVGSHYWAFETQ--N 281

Query: 104 IIPDIVTV 111
           +IPDIV V
Sbjct: 282 VIPDIVCV 289

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8TBG4|AT2L1_HUMAN Ethanolamine-phosphate phospho-lyase OS=Homo sapiens GN=AGXT2L1 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/68 (67%), Positives = 58/68 (85%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AES+QSCGGQIIPPA Y ++V ++V  AGGV +ADEVQVGFGRVG H+W+FQ+ G+D
Sbjct: 209 AFIAESMQSCGGQIIPPAGYFQKVAEYVHGAGGVFIADEVQVGFGRVGKHFWSFQMYGED 268

Query: 104 IIPDIVTV 111
            +PDIVT+
Sbjct: 269 FVPDIVTM 276

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BWU8|AT2L1_MOUSE Ethanolamine-phosphate phospho-lyase OS=Mus musculus GN=Agxt2l1 PE=2 SV=1

 Score =  109 bits (273), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 58/68 (85%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AES+QSCGGQIIPPA Y ++V +H+  AGGV +ADEVQVGFGRVG ++W+FQ+ G+D
Sbjct: 209 AFIAESMQSCGGQIIPPAGYFQKVAEHIHKAGGVFIADEVQVGFGRVGRYFWSFQMYGED 268

Query: 104 IIPDIVTV 111
            +PDIVT+
Sbjct: 269 FVPDIVTM 276

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8IUZ5|AT2L2_HUMAN 5-phosphohydroxy-L-lysine phospho-lyase OS=Homo sapiens GN=AGXT2L2 PE=1 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 57/69 (82%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AFFAESL S GGQIIPPA Y  +V +H+R AGGV VADE+QVGFGRVG H+WAFQLQG 
Sbjct: 208 AAFFAESLPSVGGQIIPPAGYFSQVAEHIRKAGGVFVADEIQVGFGRVGKHFWAFQLQGK 267

Query: 103 DIIPDIVTV 111
           D +PDIVT+
Sbjct: 268 DFVPDIVTM 276

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q8R1K4|AT2L2_MOUSE 5-phosphohydroxy-L-lysine phospho-lyase OS=Mus musculus GN=Agxt2l2 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 45/68 (66%), Positives = 56/68 (82%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AFFAESL S  GQIIPPA Y  +V +H+  AGG+ VADE+QVGFGR+G H+WAFQL+G+D
Sbjct: 209 AFFAESLPSVSGQIIPPAGYFSQVAEHIHRAGGLFVADEIQVGFGRIGKHFWAFQLEGED 268

Query: 104 IIPDIVTV 111
            +PDIVT+
Sbjct: 269 FVPDIVTM 276

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|P91408|AGT2L_CAEEL Alanine--glyoxylate aminotransferase 2-like OS=Caenorhabditis elegans GN=T01B11.2 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 40/68 (58%), Positives = 52/68 (76%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A+FAE+LQSCGGQ+IPP +Y ++V  HVR  GG+ + DEVQ GFGR+G  +WA QL  D 
Sbjct: 238 AYFAEALQSCGGQVIPPKDYFKDVATHVRNHGGLMIIDEVQTGFGRIGRKYWAHQLYDDG 297

Query: 104 IIPDIVTV 111
            +PDIVT+
Sbjct: 298 FLPDIVTM 305

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: -

>sp|Q940M2|AGT21_ARATH Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial OS=Arabidopsis thaliana GN=AGT2 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/68 (55%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
            F AE++Q  GG +     YL+ VY+ VR AGGVC+ADEVQ GFGR G+H+W FQ Q  D
Sbjct: 253 GFIAETIQGVGGAVELAPGYLKSVYEIVRNAGGVCIADEVQTGFGRTGSHYWGFQTQ--D 310

Query: 104 IIPDIVTV 111
           ++PDIVT+
Sbjct: 311 VVPDIVTM 318

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 4

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
242012375	440	alanine-glyoxylate aminotransferase, put	0.605	0.156	0.840	5e-32
383855028	484	PREDICTED: alanine--glyoxylate aminotran	0.605	0.142	0.797	3e-28
321459394	446	hypothetical protein DAPPUDRAFT_202337 [	0.587	0.150	0.805	4e-28
443733377	474	hypothetical protein CAPTEDRAFT_188970 [	0.596	0.143	0.764	6e-28
350419709	485	PREDICTED: alanine--glyoxylate aminotran	0.605	0.142	0.797	1e-27
340713065	485	PREDICTED: alanine--glyoxylate aminotran	0.605	0.142	0.782	1e-27
307174361	483	Alanine--glyoxylate aminotransferase 2-l	0.605	0.142	0.782	1e-27
345488761	485	PREDICTED: alanine--glyoxylate aminotran	0.596	0.140	0.794	3e-27
328705297	447	PREDICTED: alanine--glyoxylate aminotran	0.605	0.154	0.753	5e-27
328705295	379	PREDICTED: alanine--glyoxylate aminotran	0.605	0.182	0.753	5e-27

>gi|242012375|ref|XP_002426908.1| alanine-glyoxylate aminotransferase, putative [Pediculus humanus corporis] gi|212511137|gb|EEB14170.1| alanine-glyoxylate aminotransferase, putative [Pediculus humanus corporis]

 Score =  141 bits (356), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/69 (84%), Positives = 63/69 (91%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CAF  ESLQSCGGQIIPP NYLR VYKHV+ AGGVC+ADEVQVGFGRVG+HWW FQLQGD
Sbjct: 210 CAFIGESLQSCGGQIIPPKNYLRNVYKHVKEAGGVCIADEVQVGFGRVGSHWWGFQLQGD 269

Query: 103 DIIPDIVTV 111
           D+IPDIVT+
Sbjct: 270 DVIPDIVTL 278

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855028|ref|XP_003703021.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Megachile rotundata]

 Score =  129 bits (323), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 55/69 (79%), Positives = 60/69 (86%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CAF AESL S GGQI+PP NY R VYKHVR AGGVC+ADEVQVGFGRVG+H WAFQL G+
Sbjct: 215 CAFIAESLMSVGGQILPPENYFRNVYKHVREAGGVCIADEVQVGFGRVGSHMWAFQLYGE 274

Query: 103 DIIPDIVTV 111
           D+IPDIVTV
Sbjct: 275 DVIPDIVTV 283

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459394|gb|EFX70448.1| hypothetical protein DAPPUDRAFT_202337 [Daphnia pulex]

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/67 (80%), Positives = 61/67 (91%)

Query: 45  FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDI 104
           F AESLQSCGGQII P +YLR VYK VR AGGVC+ADEVQVGFGRVG+HWWAFQLQG+D+
Sbjct: 216 FIAESLQSCGGQIILPPDYLRRVYKSVRDAGGVCIADEVQVGFGRVGSHWWAFQLQGEDV 275

Query: 105 IPDIVTV 111
           +PDIVT+
Sbjct: 276 VPDIVTM 282

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443733377|gb|ELU17763.1| hypothetical protein CAPTEDRAFT_188970 [Capitella teleta]

 Score =  127 bits (320), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/68 (76%), Positives = 61/68 (89%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF+AESLQSC GQIIPP  Y ++ YKHVR AGG+C+ADEVQVGFGRVGTH WAFQLQG+D
Sbjct: 200 AFYAESLQSCAGQIIPPEGYFKKAYKHVRDAGGICIADEVQVGFGRVGTHMWAFQLQGED 259

Query: 104 IIPDIVTV 111
           ++PDIVT+
Sbjct: 260 VVPDIVTM 267

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|350419709|ref|XP_003492276.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Bombus impatiens]

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/69 (79%), Positives = 59/69 (85%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CAF AESL S GGQI+PP NY R VYKHVR AGGVC+ADEVQVGFGRVG+H WAFQL G+
Sbjct: 215 CAFIAESLMSVGGQILPPQNYFRNVYKHVREAGGVCIADEVQVGFGRVGSHMWAFQLYGE 274

Query: 103 DIIPDIVTV 111
           D IPDIVTV
Sbjct: 275 DAIPDIVTV 283

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713065|ref|XP_003395072.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like [Bombus terrestris]

 Score =  127 bits (318), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/69 (78%), Positives = 59/69 (85%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CAF AESL S GGQI+PP NY R  YKHVR AGGVC+ADEVQVGFGRVG+H WAFQL G+
Sbjct: 215 CAFIAESLMSVGGQILPPQNYFRNAYKHVREAGGVCIADEVQVGFGRVGSHMWAFQLYGE 274

Query: 103 DIIPDIVTV 111
           D+IPDIVTV
Sbjct: 275 DVIPDIVTV 283

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174361|gb|EFN64903.1| Alanine--glyoxylate aminotransferase 2-like [Camponotus floridanus]

 Score =  126 bits (317), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/69 (78%), Positives = 60/69 (86%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CA+ AESL S GGQI+PP NY R VYKHVR AGGVC+ADEVQVGFGRVGTH WAFQL G+
Sbjct: 214 CAYIAESLISVGGQILPPENYFRNVYKHVREAGGVCIADEVQVGFGRVGTHMWAFQLYGE 273

Query: 103 DIIPDIVTV 111
           D+IPDIVT+
Sbjct: 274 DVIPDIVTL 282

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488761|ref|XP_003425979.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like 1-like isoform 2 [Nasonia vitripennis] gi|345488763|ref|XP_001605716.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like 1-like isoform 1 [Nasonia vitripennis]

 Score =  125 bits (315), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/68 (79%), Positives = 60/68 (88%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AESL S GGQI+PP NY R VYKHVRAAGGVC+ADEVQVGFGRVG+H WAFQL G+D
Sbjct: 215 AFIAESLMSVGGQILPPDNYFRNVYKHVRAAGGVCIADEVQVGFGRVGSHMWAFQLYGED 274

Query: 104 IIPDIVTV 111
           ++PDIVTV
Sbjct: 275 LVPDIVTV 282

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705297|ref|XP_001949442.2| PREDICTED: alanine--glyoxylate aminotransferase 2-like isoform 1 [Acyrthosiphon pisum]

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/69 (75%), Positives = 61/69 (88%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CAF AESLQSCGGQII P NYLR+VY +VR AGGVC+ADEVQVGFGR GTH+WAF++ G 
Sbjct: 209 CAFIAESLQSCGGQIILPHNYLRDVYTYVREAGGVCIADEVQVGFGRSGTHYWAFEIDGP 268

Query: 103 DIIPDIVTV 111
           D++PDIVT+
Sbjct: 269 DVLPDIVTI 277

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705295|ref|XP_003242758.1| PREDICTED: alanine--glyoxylate aminotransferase 2-like isoform 3 [Acyrthosiphon pisum]

 Score =  125 bits (313), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/69 (75%), Positives = 61/69 (88%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CAF AESLQSCGGQII P NYLR+VY +VR AGGVC+ADEVQVGFGR GTH+WAF++ G 
Sbjct: 141 CAFIAESLQSCGGQIILPHNYLRDVYTYVREAGGVCIADEVQVGFGRSGTHYWAFEIDGP 200

Query: 103 DIIPDIVTV 111
           D++PDIVT+
Sbjct: 201 DVLPDIVTI 209

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
ZFIN|ZDB-GENE-040426-1133	492	agxt2l1 "alanine-glyoxylate am	0.596	0.138	0.720	6.8e-24
UNIPROTKB|E1B8R9	450	AGXT2L2 "Uncharacterized prote	0.596	0.151	0.75	2.7e-23
UNIPROTKB|F6XN94	397	AGXT2L1 "Uncharacterized prote	0.596	0.171	0.691	3.9e-23
UNIPROTKB|E1C8Q2	501	AGXT2L1 "Uncharacterized prote	0.596	0.135	0.705	4.4e-23
UNIPROTKB|Q8IUZ5	450	AGXT2L2 "5-phosphohydroxy-L-ly	0.596	0.151	0.735	4.5e-23
UNIPROTKB|J9NYE8	456	AGXT2L1 "Uncharacterized prote	0.596	0.149	0.691	1.1e-22
UNIPROTKB|H9L0I3	355	H9L0I3 "Uncharacterized protei	0.596	0.191	0.720	1.3e-22
UNIPROTKB|H9L0I4	362	H9L0I4 "Uncharacterized protei	0.596	0.187	0.720	1.3e-22
UNIPROTKB|E2R2V9	494	AGXT2L1 "Uncharacterized prote	0.596	0.137	0.691	1.5e-22
UNIPROTKB|F1S421	450	AGXT2L2 "Uncharacterized prote	0.596	0.151	0.705	1.7e-22

ZFIN|ZDB-GENE-040426-1133 agxt2l1 "alanine-glyoxylate aminotransferase 2-like 1" [Danio rerio (taxid:7955)]

 Score = 279 (103.3 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 49/68 (72%), Positives = 59/68 (86%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AF AESLQSCGGQ+IPP  Y ++V +HVR AGG+ +ADEVQVGFGRVGTH+W FQLQG+D
Sbjct:   211 AFIAESLQSCGGQVIPPMGYFQKVAQHVRNAGGIFIADEVQVGFGRVGTHFWGFQLQGED 270

Query:   104 IIPDIVTV 111
              +PDIVT+
Sbjct:   271 FVPDIVTM 278

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0035162 "embryonic hemopoiesis" evidence=IMP

GO:0050459 "ethanolamine-phosphate phospho-lyase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E1B8R9 AGXT2L2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 2.7e-23, P = 2.7e-23
 Identities = 51/68 (75%), Positives = 57/68 (83%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AFFAESL S GGQIIPPA Y  EV  H+R AGGV VADE+QVGFGRVG H+WAFQLQG+D
Sbjct:   209 AFFAESLPSVGGQIIPPAGYFPEVAGHIRRAGGVFVADEIQVGFGRVGKHFWAFQLQGED 268

Query:   104 IIPDIVTV 111
              +PDIVT+
Sbjct:   269 FVPDIVTM 276

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|F6XN94 AGXT2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 3.9e-23, P = 3.9e-23
 Identities = 47/68 (69%), Positives = 59/68 (86%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AF AES+QSCGGQIIPPA Y ++V ++V  AGGV +ADEVQVGFGRVG H+W+FQ+QG+D
Sbjct:   107 AFIAESMQSCGGQIIPPAGYFQKVAEYVHRAGGVFIADEVQVGFGRVGKHFWSFQMQGED 166

Query:   104 IIPDIVTV 111
              +PDIVT+
Sbjct:   167 FVPDIVTM 174

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|E1C8Q2 AGXT2L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 272 (100.8 bits), Expect = 4.4e-23, P = 4.4e-23
 Identities = 48/68 (70%), Positives = 59/68 (86%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AF AES+QSCGGQ+IPP  Y ++V ++V AAGGV +ADEVQVGFGRVG H+WAFQLQG+D
Sbjct:   210 AFIAESMQSCGGQVIPPVGYFQKVAEYVHAAGGVFIADEVQVGFGRVGKHFWAFQLQGED 269

Query:   104 IIPDIVTV 111
              +PDIVT+
Sbjct:   270 FVPDIVTM 277

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|Q8IUZ5 AGXT2L2 "5-phosphohydroxy-L-lysine phospho-lyase" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 4.5e-23, P = 4.5e-23
 Identities = 50/68 (73%), Positives = 57/68 (83%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AFFAESL S GGQIIPPA Y  +V +H+R AGGV VADE+QVGFGRVG H+WAFQLQG D
Sbjct:   209 AFFAESLPSVGGQIIPPAGYFSQVAEHIRKAGGVFVADEIQVGFGRVGKHFWAFQLQGKD 268

Query:   104 IIPDIVTV 111
              +PDIVT+
Sbjct:   269 FVPDIVTM 276

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|J9NYE8 AGXT2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 1.1e-22, P = 1.1e-22
 Identities = 47/68 (69%), Positives = 59/68 (86%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AF AES+QSCGGQIIPPA Y ++V ++V  AGGV +ADEVQVGFGRVG H+W+FQ+QG+D
Sbjct:   208 AFIAESMQSCGGQIIPPAGYFQKVAEYVHRAGGVFIADEVQVGFGRVGKHFWSFQMQGED 267

Query:   104 IIPDIVTV 111
              +PDIVT+
Sbjct:   268 FVPDIVTM 275

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|H9L0I3 H9L0I3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/68 (72%), Positives = 57/68 (83%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AFFAESL S GGQIIPP  Y ++V +HV  AGGV VADE+QVGFGRVG H+WAFQLQG++
Sbjct:   203 AFFAESLPSVGGQIIPPEGYFQKVAEHVHKAGGVFVADEIQVGFGRVGKHFWAFQLQGEE 262

Query:   104 IIPDIVTV 111
              IPDIVT+
Sbjct:   263 FIPDIVTM 270

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|H9L0I4 H9L0I4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/68 (72%), Positives = 57/68 (83%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AFFAESL S GGQIIPP  Y ++V +HV  AGGV VADE+QVGFGRVG H+WAFQLQG++
Sbjct:   210 AFFAESLPSVGGQIIPPEGYFQKVAEHVHKAGGVFVADEIQVGFGRVGKHFWAFQLQGEE 269

Query:   104 IIPDIVTV 111
              IPDIVT+
Sbjct:   270 FIPDIVTM 277

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|E2R2V9 AGXT2L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 267 (99.0 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 47/68 (69%), Positives = 59/68 (86%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AF AES+QSCGGQIIPPA Y ++V ++V  AGGV +ADEVQVGFGRVG H+W+FQ+QG+D
Sbjct:   209 AFIAESMQSCGGQIIPPAGYFQKVAEYVHRAGGVFIADEVQVGFGRVGKHFWSFQMQGED 268

Query:   104 IIPDIVTV 111
              +PDIVT+
Sbjct:   269 FVPDIVTM 276

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

UNIPROTKB|F1S421 AGXT2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 265 (98.3 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 48/68 (70%), Positives = 57/68 (83%)

Query:    44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
             AFFAESL S GGQI+PPA +  EV +H+  AGGV VADE+QVGFGRVG H+WAFQLQG+D
Sbjct:   209 AFFAESLPSVGGQIVPPAGFFPEVAEHIHKAGGVFVADEIQVGFGRVGKHFWAFQLQGED 268

Query:   104 IIPDIVTV 111
              +PDIVT+
Sbjct:   269 FVPDIVTM 276

GO:0005739 "mitochondrion" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q940M2	AGT21_ARATH	2, ., 6, ., 1, ., 4, 4	0.5588	0.5789	0.1386	yes	N/A
Q5E9S4	AT2L1_BOVIN	2, ., 6, ., 1, ., -	0.6911	0.5964	0.1368	yes	N/A
Q7SY54	AT2L1_DANRE	2, ., 6, ., 1, ., -	0.7205	0.5964	0.1382	yes	N/A
Q9VU95	AGT2L_DROME	2, ., 6, ., 1, ., -	0.7205	0.5789	0.1336	yes	N/A
Q8BWU8	AT2L1_MOUSE	2, ., 6, ., 1, ., -	0.6617	0.5964	0.1362	yes	N/A
P91408	AGT2L_CAEEL	2, ., 6, ., 1, ., -	0.5882	0.5964	0.1456	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	4e-38
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	5e-25
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	9e-25
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	3e-23
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	6e-14
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	6e-13
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	8e-13
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	1e-12
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	1e-12
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	2e-12
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	5e-12
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	7e-12
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	1e-11
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	3e-11
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	2e-10
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	6e-10
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	7e-10
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	4e-09
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	4e-09
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	4e-09
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	6e-09
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	6e-09
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	1e-08
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	1e-08
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	1e-08
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	4e-08
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	4e-08
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	5e-08
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	5e-08
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	6e-08
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	7e-08
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	8e-08
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	9e-08
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	1e-07
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	1e-07
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	1e-07
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	1e-07
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	1e-07
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	2e-07
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	3e-07
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	3e-07
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	3e-07
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	4e-07
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	3e-06
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	4e-06
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	7e-06
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	1e-05
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	2e-05
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	2e-05
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	2e-05
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	3e-05
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	6e-05
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	7e-05
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	8e-05
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	1e-04
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	3e-04
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	4e-04
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	4e-04
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	4e-04
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	0.002
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	0.002

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  135 bits (341), Expect = 4e-38
 Identities = 48/69 (69%), Positives = 54/69 (78%), Gaps = 2/69 (2%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
           P  F AES+ S  GQI  P  YLREVY  VRAAGGVC+ADEVQVGFGRVG+HWWAF+ QG
Sbjct: 785 PAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQG 844

Query: 102 DDIIPDIVT 110
             ++PDIVT
Sbjct: 845 --VVPDIVT 851

Length = 1013

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score = 96.9 bits (242), Expect = 5e-25
 Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 3/70 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
             A   E +Q  GG I+PP  +L+ + K  R  G + +ADEVQ GFGR G   +AF+  G
Sbjct: 223 VAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEHFG 281

Query: 102 DDIIPDIVTV 111
             + PDIVT+
Sbjct: 282 --VEPDIVTL 289

Length = 447

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score = 97.0 bits (242), Expect = 9e-25
 Identities = 34/70 (48%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
              F  E +    G I  P  YL++VY  VRA GGVC+ADEVQVG+GR+G ++W F+ QG
Sbjct: 745 LAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQG 804

Query: 102 DDIIPDIVTV 111
             ++PDI+T+
Sbjct: 805 --VVPDIITM 812

Length = 972

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 91.9 bits (229), Expect = 3e-23
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
             A   E +Q  GG I+PP  YL+ + +  R  G + +ADEVQ GFGR G  +       
Sbjct: 192 VAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEH--- 248

Query: 102 DDIIPDIVTV 111
             + PDIVT+
Sbjct: 249 FGVEPDIVTL 258

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score = 66.0 bits (162), Expect = 6e-14
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A   E +Q  GG I  P  +L+ + +     G + + DEVQ G GR G   +A++  G 
Sbjct: 186 AAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG-KLFAYEHYG- 243

Query: 103 DIIPDIVTV 111
            + PDI+T+
Sbjct: 244 -VEPDILTL 251

Length = 404

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score = 62.8 bits (154), Expect = 6e-13
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A   E +Q  GG       YL+ + +     G + + DEVQ G GR G   +A+Q  G 
Sbjct: 184 AAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYG- 241

Query: 103 DIIPDIVTV 111
            I PDI+T+
Sbjct: 242 -IEPDIMTL 249

Length = 396

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score = 62.6 bits (153), Expect = 8e-13
 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF  E +Q  GG IIPPA Y  E+ +  R    + VADEV  GFGR G  W+  Q  G  
Sbjct: 222 AFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTG-EWFGSQHFG-- 278

Query: 104 IIPDIVTV 111
           I PD++T+
Sbjct: 279 IKPDLMTI 286

Length = 456

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A FAE +Q   G I+PP +Y +++ K +   G + V DEVQ G GR G  W  F ++   
Sbjct: 207 ALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK-W--FAIEHFG 263

Query: 104 IIPDIVTV 111
           + PDI+T+
Sbjct: 264 VEPDIITL 271

Length = 443

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A F E +Q   G + PPA YL    +     G + V DEVQ G GR G  W+A Q  G  
Sbjct: 186 AVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTG-AWFAHQHDG-- 242

Query: 104 IIPDIVT 110
           + PD+VT
Sbjct: 243 VTPDVVT 249

Length = 398

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG ++PP N+ +E+ K     G + + DEVQ G GR G   +A +  G  
Sbjct: 224 AIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHFG-- 280

Query: 104 IIPDIVTV 111
           + PDI+T+
Sbjct: 281 VEPDIITL 288

Length = 441

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score = 60.5 bits (147), Expect = 5e-12
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ-LQGD 102
           AF AE +   GG I+PP  Y   + +  R    + ++DEV  GFGR+G H++A + + G 
Sbjct: 223 AFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLG-HFFASEAVFG- 280

Query: 103 DIIPDIVTV 111
            I PDI+T 
Sbjct: 281 -IQPDIITF 288

Length = 466

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 43  CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
            AF  E +    GG ++PP  YL+ V +     G + +ADEV  GFGR G     F  + 
Sbjct: 216 AAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGK---MFACEH 272

Query: 102 DDIIPDIVTV 111
             I+PDI+ +
Sbjct: 273 AGIVPDILCL 282

Length = 449

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score = 59.6 bits (145), Expect = 1e-11
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A   E +Q  GG + PP  +L  + +  +  G + +ADEVQ GFGR G   +A   +  
Sbjct: 179 AAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLIADEVQTGFGRTGK-LFAC--EHY 235

Query: 103 DIIPDIVTV 111
            + PDI+T+
Sbjct: 236 GVTPDIMTL 244

Length = 338

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AFF E +Q  GG I+PP  +L+ + +  R  G + VADEV  GFGR G     F  + + 
Sbjct: 218 AFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP---LFACEAEG 274

Query: 104 IIPDIVTV 111
           ++PD++TV
Sbjct: 275 VVPDLMTV 282

Length = 459

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF  E +   GG I+PP  Y  ++   +R    + VADEV  GFGR G   +  +  G  
Sbjct: 221 AFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG-- 277

Query: 104 IIPDIVTV 111
           I PDI+ +
Sbjct: 278 IKPDILVM 285

Length = 460

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG I+PP  YL  V K     G + + DEVQ G GR G     F  + ++
Sbjct: 234 AVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGK---MFACEHEN 290

Query: 104 IIPDIVT 110
           + PDI+ 
Sbjct: 291 VQPDILC 297

Length = 459

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score = 54.4 bits (131), Expect = 7e-10
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 48  ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
           E +Q  GG I+P   +++EV       G + VADE+Q GF R G +   F ++  D++PD
Sbjct: 226 EPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKY---FAIEHFDVVPD 282

Query: 108 IVTV 111
           ++TV
Sbjct: 283 LITV 286

Length = 451

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG----THWWAFQ 98
           CAF  E +Q   G ++P   YL++V +       + +ADE+Q G GR G           
Sbjct: 188 CAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDH---- 243

Query: 99  LQGDDIIPDIVT 110
              +++ PDIV 
Sbjct: 244 ---ENVKPDIVL 252

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E + + GG ++PP +Y++ V +  +  G + ++DEV  GFGR G    AF      
Sbjct: 216 AVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK---AFGFMNYG 272

Query: 104 IIPDIVT 110
           + PDI+T
Sbjct: 273 VKPDIIT 279

Length = 451

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 52.0 bits (125), Expect = 4e-09
 Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
           P A   E +Q  GG I  P  +LR + +    AG   + DE+Q GFGR G   +AF+  G
Sbjct: 232 PAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHAG 290

Query: 102 DDIIPDIVT 110
             IIPD+V 
Sbjct: 291 --IIPDVVV 297

Length = 464

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AF  E +Q   G I+P   YL++VY+  +    + + DE+Q G GR G          +
Sbjct: 180 AAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAH---DHE 236

Query: 103 DIIPDIVT 110
            + PDIV 
Sbjct: 237 GVKPDIVL 244

Length = 400

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 48  ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
           E++Q  GG + P   Y   +YK  R  G +   D++Q G GR G  W +       I PD
Sbjct: 214 ETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHFN--ITPD 270

Query: 108 IVTV 111
           +++ 
Sbjct: 271 LMSF 274

Length = 445

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
           P A   E++Q  GG +  P+ +L+++ +  R      + DEVQ GFGR GT  +AF+  G
Sbjct: 207 PAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAG 265

Query: 102 DDIIPDIV 109
             I PD V
Sbjct: 266 --IEPDFV 271

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG I+P   +L  + +  R  G V +ADEVQ GF R G  W+A + +G  
Sbjct: 222 AVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTG-AWFACEHEG-- 278

Query: 104 IIPDIVT 110
           I+PD++T
Sbjct: 279 IVPDLIT 285

Length = 443

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF  E +Q   G  IPP  +L+   +  +    + +ADE+Q G GR G     F    D+
Sbjct: 189 AFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK---LFACDWDN 245

Query: 104 IIPDI 108
           + PD+
Sbjct: 246 VTPDM 250

Length = 396

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 48  ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
           E +   GG I+PP ++L+++ +     G + + DEVQ GFGR G  W  F  Q   ++PD
Sbjct: 214 EPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTG-EW--FAAQTFGVVPD 270

Query: 108 IVTV 111
           I+T+
Sbjct: 271 IMTI 274

Length = 433

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 49.2 bits (117), Expect = 4e-08
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%)

Query: 35  YPFLFLYP----CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90
           Y F  + P     A FAE +Q   G ++PP N+ +E+ K +   G + V DEVQ G GR 
Sbjct: 212 YVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRT 271

Query: 91  GTHWWA---FQLQGDDII 105
           G  W+A   F+++ D II
Sbjct: 272 GK-WFASEWFEVKPDLII 288

Length = 457

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE +   GG I PPA Y  ++   ++    + +ADEV   FGR+GT    F     +
Sbjct: 263 AFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT---MFGCDKYN 319

Query: 104 IIPDIVTV 111
           I PD+V++
Sbjct: 320 IKPDLVSL 327

Length = 504

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score = 49.0 bits (117), Expect = 5e-08
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG----THWWAFQ 98
            AF  E +Q   G +IPP  YL+ V +       + +ADE+Q G  R G      W    
Sbjct: 226 AAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDW---- 281

Query: 99  LQGDDIIPDIV 109
              +++ PD+V
Sbjct: 282 ---EEVRPDVV 289

Length = 474

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 48.6 bits (117), Expect = 6e-08
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 43  CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
            AF  E L Q  GG    P  YLR++ +     G + +ADE+  GFGR G   +A +   
Sbjct: 197 AAFIVEPLVQGAGGMRFYPPEYLRKLRELCDEYGVLLIADEIATGFGRTGK-LFACEH-- 253

Query: 102 DDIIPDIVTV 111
             + PDI+ +
Sbjct: 254 AGVTPDILCL 263

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score = 48.7 bits (116), Expect = 7e-08
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG I+P   ++  +    R  G V +ADEVQ GF R G     F  + + 
Sbjct: 200 ALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAM---FACEHEG 256

Query: 104 IIPDIVTV 111
             PD++T 
Sbjct: 257 PEPDLITT 264

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   ES+    G ++PP  YL  V +     G V +ADEV  GFGR G  W+A +     
Sbjct: 217 AILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEH--FG 273

Query: 104 IIPDIVT 110
           ++PD++T
Sbjct: 274 VVPDLIT 280

Length = 451

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 48.3 bits (116), Expect = 9e-08
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 42  PCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100
             AF  E L Q  GG +     YL E+ +     G + + DE+  GFGR GT    F  +
Sbjct: 200 IAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT---LFACE 256

Query: 101 GDDIIPDIVTV 111
              + PDI+ +
Sbjct: 257 QAGVSPDIMCL 267

Length = 423

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 48  ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
           E +Q  GG I     +L+EV    +  G + + DEVQ G GR GT    F  +   + PD
Sbjct: 174 EVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT---LFAYEQFGLDPD 230

Query: 108 IVTV 111
           IVTV
Sbjct: 231 IVTV 234

Length = 377

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A   E +Q  GG     A +L+ + +  +    + + DEVQ G GR G  ++A++  G 
Sbjct: 172 AAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTG-KFFAYEHYG- 229

Query: 103 DIIPDIVTV 111
            I PDI+T+
Sbjct: 230 -IEPDIITL 237

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 11/72 (15%)

Query: 44  AFFAESLQSCGGQIIPPANY---LREVY-KHVRAAGGVCVADEVQVGFGRVGTHWWAFQL 99
           AF AE +Q  GG I+PPAN+   +REV  +H    G + +ADEV  GFGR G+ W+  + 
Sbjct: 216 AFIAEPVQGAGGVIVPPANFWPLVREVCDRH----GILLIADEVVTGFGRTGS-WFGSRG 270

Query: 100 QGDDIIPDIVTV 111
            G  + PDI+ +
Sbjct: 271 WG--VKPDIMCL 280

Length = 449

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
            F AE  Q  GG I PP +Y  E+ +  R    +  ADEV  GFGR G  W+A +  G +
Sbjct: 225 GFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTG-EWFAHEHFGFE 283

Query: 104 IIPDIVTV 111
             PD +++
Sbjct: 284 --PDTLSI 289

Length = 460

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG I+PP  YL  V       G + + DEVQ G GR G     F  + + 
Sbjct: 227 AIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGK---MFACEHEG 283

Query: 104 IIPDIV 109
           + PDI+
Sbjct: 284 VQPDIL 289

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A F E +Q+ GG   PP  Y   V +       + V+DEV   FGR+G   +  +  G 
Sbjct: 223 AAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLG-EMFGCERFG- 280

Query: 103 DIIPDIVT 110
             +PDI+T
Sbjct: 281 -YVPDIIT 287

Length = 460

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 7/71 (9%)

Query: 43  CAFFAESLQSCGGQIIPPAN--YLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ 100
            A F E +Q  GG  I PA   +L+ +      AG + V DEVQ G GR G + WA +  
Sbjct: 169 AAVFVEPVQGEGG--IYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTG-YLWAHEAY 225

Query: 101 GDDIIPDIVTV 111
           G  + PDI+T+
Sbjct: 226 G--VEPDIMTL 234

Length = 382

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
           P A   E++Q  GG    P  +L+++ +  +  G + + DEVQ GF R G   +AF+  G
Sbjct: 226 PAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAG 284

Query: 102 DDIIPDIV 109
             I PDI+
Sbjct: 285 --IEPDII 290

Length = 459

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 44  AFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           A   E L Q  GG I  P  YL+ +         + + DEV  GFGR G     F  + +
Sbjct: 226 AIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK---MFACEHE 282

Query: 103 DIIPDIVTV 111
           ++ PDI+T 
Sbjct: 283 NVTPDIMTA 291

Length = 460

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 20/48 (41%), Positives = 24/48 (50%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91
           AF  E +Q   G IIPPA Y   V +   A     + DE+Q G GR G
Sbjct: 190 AFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTG 237

Length = 401

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +    G +IPP  YL+ + +     G + + DEV  GFGR+G     F  Q   
Sbjct: 218 AVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA---PFAAQYFG 274

Query: 104 IIPDIVTV 111
           + PD++T 
Sbjct: 275 VTPDLLTC 282

Length = 442

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE +   GG + PPA Y   +   ++    + +ADEV  GFGR+G+    F      
Sbjct: 223 AFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS---MFGSDHYG 279

Query: 104 IIPDIVTV 111
           I PD++TV
Sbjct: 280 IEPDLITV 287

Length = 461

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score = 42.8 bits (101), Expect = 7e-06
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CA   E +Q  GG +     +L+ + +       + + DEVQ G GR G   +A+   G 
Sbjct: 181 CAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTG-ELYAYMHYG- 238

Query: 103 DIIPDIVT 110
            + PDI+T
Sbjct: 239 -VTPDILT 245

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AF AE++++   Q+ P   Y + V +       + + DE+  G GR G  W+    Q  
Sbjct: 231 GAFIAEAVRNTDVQV-PSKAYWKRVREICDKHNVLLIIDEIPNGMGRTG-EWFTH--QAY 286

Query: 103 DIIPDIV 109
            I PDI+
Sbjct: 287 GIEPDIL 293

Length = 459

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 17/74 (22%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVC-------VADEVQVGFGRVGTHWW 95
             F AE +Q  GG      N+ R  +    A   +C       + DEVQ G G  GT  W
Sbjct: 227 ACFIAEPIQGEGGD-----NHFRPEF--FAAMRELCDEHDALLIFDEVQTGVGLTGT-AW 278

Query: 96  AFQLQGDDIIPDIV 109
           A+Q  G  + PDIV
Sbjct: 279 AYQQLG--VRPDIV 290

Length = 443

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 44  AFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT-----HWWAF 97
           AF AE +  + G  ++PP  Y + + +       + +ADEV  G GR G      HW   
Sbjct: 202 AFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHW--- 258

Query: 98  QLQGDDIIPDIVT 110
                 + PDI+T
Sbjct: 259 -----GVEPDIMT 266

Length = 447

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG    PA +++ + +     G + +ADEVQ GF R G     F ++  +
Sbjct: 201 AIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK---LFAMEHHE 257

Query: 104 IIPDIVT 110
           +  D+ T
Sbjct: 258 VAADLTT 264

Length = 425

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 9/71 (12%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT---HWWAFQLQ 100
           A   E +Q  GG +     +L  V         + V DE+Q G GR GT   HW      
Sbjct: 190 AVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHW------ 243

Query: 101 GDDIIPDIVTV 111
            + + PDIVT+
Sbjct: 244 QEQVTPDIVTL 254

Length = 408

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CA   E +Q  GG I     +L+ + +       + + DEVQ G GR G   +A+     
Sbjct: 186 CAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTG-DLFAY--MHY 242

Query: 103 DIIPDIVT 110
            + PDI+T
Sbjct: 243 GVTPDILT 250

Length = 403

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score = 40.2 bits (95), Expect = 7e-05
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
           P A   E++Q  GG  +  A +L+ + K  R    + + D++Q G GR GT    F  + 
Sbjct: 199 PAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTF---FSFER 255

Query: 102 DDIIPDIVTV 111
             I PDIVT+
Sbjct: 256 AGITPDIVTL 265

Length = 425

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score = 40.0 bits (93), Expect = 8e-05
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)

Query: 43  CAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
           CA   E  LQ  GG  +    YLR   +   A G   +ADE+  GFGR GT    F  + 
Sbjct: 238 CALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT---LFACEQ 294

Query: 102 DDIIPDIV 109
             ++PD++
Sbjct: 295 AGVMPDLL 302

Length = 472

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
           P A   E++Q  GG  +    +L+ + K  R    + + D++Q G GR GT +++F+  G
Sbjct: 195 PAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAG 253

Query: 102 DDIIPDIVTV 111
             I PDIV +
Sbjct: 254 --IEPDIVCL 261

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 48  ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD 107
           E +Q  GG I     +++++    +  G + + DEVQ G GR GT  +A++L G  I PD
Sbjct: 186 EPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT-LFAYELSG--IEPD 242

Query: 108 IVT 110
           I+T
Sbjct: 243 IMT 245

Length = 395

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 11/72 (15%)

Query: 44  AFFAESLQSCGGQIIPPANYL---REVY-KHVRAAGGVCVADEVQVGFGRVGTHWWAFQL 99
           A   E +    G ++PP  YL   RE+  KH    G + + DEV  GFGR+G    AF  
Sbjct: 221 AVIVEPMAGSAGVLVPPKGYLQRLREICDKH----GILLIFDEVITGFGRLGA---AFAA 273

Query: 100 QGDDIIPDIVTV 111
           +   + PDI+T 
Sbjct: 274 ERFGVTPDIITF 285

Length = 445

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT---HWWAFQLQ 100
           A   E +Q  GG    P  +L+ + +     G + + DEVQ G GR G    H WA    
Sbjct: 178 AILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWA---- 233

Query: 101 GDDIIPDIVTV 111
              + PDI+ V
Sbjct: 234 --GVTPDIMAV 242

Length = 389

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score = 37.9 bits (88), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG  + P  ++  +       G + +ADEVQ GF R G     F ++  D
Sbjct: 201 AILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK---LFAMEYYD 257

Query: 104 IIPDIVTV 111
           + PD++T+
Sbjct: 258 VKPDLITM 265

Length = 421

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 16/75 (21%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVC-------VADEVQVGFGRVGTHWWA 96
           AF AE++       +PP       +K +R    VC       + DEV  G GR GT    
Sbjct: 202 AFVAETVVGATAGAVPPV---PGYFKRIRE---VCDRYGVLLILDEVMCGMGRTGT---L 252

Query: 97  FQLQGDDIIPDIVTV 111
           F  + D + PD+VT+
Sbjct: 253 FACEEDGVAPDLVTI 267

Length = 443

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
            F AE +Q  GG       +LR +         + + DEVQ G G  GT  WA+Q  G  
Sbjct: 221 CFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG-- 277

Query: 104 IIPDIV 109
           + PDIV
Sbjct: 278 VQPDIV 283

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.97
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.97
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.96
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.96
PRK05965	459	hypothetical protein; Provisional	99.95
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.95
PRK07482	461	hypothetical protein; Provisional	99.95
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.95
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.95
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.95
PRK07678	451	aminotransferase; Validated	99.95
KOG1401|consensus	433		99.95
PRK07481	449	hypothetical protein; Provisional	99.95
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.94
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.94
PRK07483	443	hypothetical protein; Provisional	99.94
PRK07480	456	putative aminotransferase; Validated	99.94
PRK12403	460	putative aminotransferase; Provisional	99.94
PRK08297	443	L-lysine aminotransferase; Provisional	99.94
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.94
PRK06105	460	aminotransferase; Provisional	99.94
PRK07036	466	hypothetical protein; Provisional	99.94
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.94
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.94
PRK06917	447	hypothetical protein; Provisional	99.94
PRK06062	451	hypothetical protein; Provisional	99.94
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.94
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.93
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.93
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.93
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.93
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.93
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.93
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.93
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.92
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.92
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.92
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.92
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.92
PRK06148	1013	hypothetical protein; Provisional	99.92
KOG1402|consensus	427		99.92
KOG1404|consensus	442		99.92
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.91
PRK06541	460	hypothetical protein; Provisional	99.91
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.91
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.91
PRK06149	972	hypothetical protein; Provisional	99.9
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.9
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.9
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.9
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.9
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.9
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.89
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.89
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.89
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.89
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.89
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.89
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.88
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.88
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.88
PLN00144	382	acetylornithine transaminase	99.87
PLN02624	474	ornithine-delta-aminotransferase	99.87
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.87
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.86
KOG1405|consensus	484		99.85
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.85
PRK07046	453	aminotransferase; Validated	99.84
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.84
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.83
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.81
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.8
KOG1403|consensus	452		99.78
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.78
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.78
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.77
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.77
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.77
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.77
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.76
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.74
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.73
PRK04260	375	acetylornithine aminotransferase; Provisional	99.71
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.68
PRK02627	396	acetylornithine aminotransferase; Provisional	99.68
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.37
PRK07505	402	hypothetical protein; Provisional	99.13
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.11
PLN02822	481	serine palmitoyltransferase	99.05
PRK09064	407	5-aminolevulinate synthase; Validated	99.0
PRK13393	406	5-aminolevulinate synthase; Provisional	98.9
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	98.8
PLN02955	476	8-amino-7-oxononanoate synthase	98.64
PRK07179	407	hypothetical protein; Provisional	98.59
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	98.49
PRK13392	410	5-aminolevulinate synthase; Provisional	98.41
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	98.37
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	98.32
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	98.0
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	97.88
cd00609	350	AAT_like Aspartate aminotransferase family. This f	97.88
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	97.8
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	97.79
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	97.74
PLN02721	353	threonine aldolase	97.64
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	97.63
PLN02483	489	serine palmitoyltransferase	97.6
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	97.48
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	97.01
TIGR01814	406	kynureninase kynureninase. This model describes ky	96.99
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	96.66
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	96.64
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	96.62
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	96.54
PRK07682	378	hypothetical protein; Validated	96.54
PRK06225	380	aspartate aminotransferase; Provisional	96.49
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	96.49
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	96.47
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	96.47
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	96.42
PRK08960	387	hypothetical protein; Provisional	96.4
KOG0259|consensus	447		96.28
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	96.28
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	96.23
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	96.21
PRK13520	371	L-tyrosine decarboxylase; Provisional	96.19
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	96.12
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	96.11
PRK07777	387	aminotransferase; Validated	95.96
PRK06108	382	aspartate aminotransferase; Provisional	95.95
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	95.94
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	95.88
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	95.88
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	95.8
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	95.77
PLN02651	364	cysteine desulfurase	95.77
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	95.77
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	95.72
PRK14012	404	cysteine desulfurase; Provisional	95.68
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	95.6
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	95.57
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	95.53
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	95.52
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	95.52
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	95.37
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	95.25
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	95.13
PRK07550	386	hypothetical protein; Provisional	95.08
PRK08574	385	cystathionine gamma-synthase; Provisional	94.97
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	94.94
PRK08175	395	aminotransferase; Validated	94.93
PRK07324	373	transaminase; Validated	94.92
PRK07309	391	aromatic amino acid aminotransferase; Validated	94.9
PRK08636	403	aspartate aminotransferase; Provisional	94.87
PRK05764	393	aspartate aminotransferase; Provisional	94.87
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	94.84
PRK10874	401	cysteine sulfinate desulfinase; Provisional	94.82
PRK05939	397	hypothetical protein; Provisional	94.75
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	94.74
PRK09257	396	aromatic amino acid aminotransferase; Provisional	94.74
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	94.73
PRK07568	397	aspartate aminotransferase; Provisional	94.71
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	94.68
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	94.53
PLN02231	534	alanine transaminase	94.47
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	94.47
PLN02656	409	tyrosine transaminase	94.43
PLN00175	413	aminotransferase family protein; Provisional	94.42
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	94.34
PRK07337	388	aminotransferase; Validated	94.3
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	94.3
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	94.28
PTZ00376	404	aspartate aminotransferase; Provisional	94.26
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	94.25
PRK06855	433	aminotransferase; Validated	94.24
PLN02187	462	rooty/superroot1	94.19
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	94.19
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	94.17
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	94.12
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	94.04
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	94.03
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	93.98
PRK06207	405	aspartate aminotransferase; Provisional	93.96
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	93.95
PTZ00094	452	serine hydroxymethyltransferase; Provisional	93.88
PRK02948	381	cysteine desulfurase; Provisional	93.86
PRK08361	391	aspartate aminotransferase; Provisional	93.86
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	93.8
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	93.75
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	93.67
PLN02242	418	methionine gamma-lyase	93.61
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	93.54
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	93.51
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	93.47
PLN02397	423	aspartate transaminase	93.35
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	93.26
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	93.26
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	93.26
PRK05967	395	cystathionine beta-lyase; Provisional	93.22
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	93.2
PRK08861	388	cystathionine gamma-synthase; Provisional	93.18
PRK09028	394	cystathionine beta-lyase; Provisional	93.16
PRK13237	460	tyrosine phenol-lyase; Provisional	93.12
PRK06348	384	aspartate aminotransferase; Provisional	93.11
PRK07681	399	aspartate aminotransferase; Provisional	93.08
PRK08056	356	threonine-phosphate decarboxylase; Provisional	92.92
PRK08068	389	transaminase; Reviewed	92.89
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	92.89
PRK08249	398	cystathionine gamma-synthase; Provisional	92.77
PRK07683	387	aminotransferase A; Validated	92.74
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	92.62
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	92.58
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	92.57
PRK07811	388	cystathionine gamma-synthase; Provisional	92.56
PRK13034	416	serine hydroxymethyltransferase; Reviewed	92.54
KOG1359|consensus	417		92.53
PRK06460	376	hypothetical protein; Provisional	92.46
PTZ00377	481	alanine aminotransferase; Provisional	92.43
PRK07503	403	methionine gamma-lyase; Provisional	92.41
PRK06358	354	threonine-phosphate decarboxylase; Provisional	92.4
PRK07050	394	cystathionine beta-lyase; Provisional	92.36
PRK07366	388	succinyldiaminopimelate transaminase; Validated	92.34
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	92.27
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	92.24
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	92.24
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	92.04
PLN02409	401	serine--glyoxylate aminotransaminase	92.03
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	91.98
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	91.89
PRK09148	405	aminotransferase; Validated	91.87
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	91.85
PRK06290	410	aspartate aminotransferase; Provisional	91.85
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	91.83
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	91.81
PLN02509	464	cystathionine beta-lyase	91.75
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	91.74
PRK08912	387	hypothetical protein; Provisional	91.72
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	91.61
PRK06767	386	methionine gamma-lyase; Provisional	91.6
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	91.49
PRK08045	386	cystathionine gamma-synthase; Provisional	91.44
PRK08363	398	alanine aminotransferase; Validated	91.38
PRK09082	386	methionine aminotransferase; Validated	91.36
PRK07582	366	cystathionine gamma-lyase; Validated	91.3
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	91.2
PRK06107	402	aspartate aminotransferase; Provisional	91.17
PRK05957	389	aspartate aminotransferase; Provisional	91.15
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	91.14
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	91.11
PTZ00433	412	tyrosine aminotransferase; Provisional	91.05
PRK02731	367	histidinol-phosphate aminotransferase; Validated	90.99
PLN02368	407	alanine transaminase	90.92
KOG0257|consensus	420		90.84
PRK00950	361	histidinol-phosphate aminotransferase; Validated	90.82
PRK12414	384	putative aminotransferase; Provisional	90.7
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	90.66
PRK08247	366	cystathionine gamma-synthase; Reviewed	90.48
PRK07671	377	cystathionine beta-lyase; Provisional	90.4
PRK08637	388	hypothetical protein; Provisional	90.31
PRK09265	404	aminotransferase AlaT; Validated	90.26
PRK06425	332	histidinol-phosphate aminotransferase; Validated	90.26
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	90.25
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	90.2
PRK07269	364	cystathionine gamma-synthase; Reviewed	90.05
PRK08776	405	cystathionine gamma-synthase; Provisional	89.94
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	89.93
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	89.92
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	89.85
PRK06234	400	methionine gamma-lyase; Provisional	89.76
PRK05942	394	aspartate aminotransferase; Provisional	89.62
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	89.59
PRK03321	352	putative aminotransferase; Provisional	89.45
PRK08064	390	cystathionine beta-lyase; Provisional	89.42
PRK05839	374	hypothetical protein; Provisional	89.39
PRK08354	311	putative aminotransferase; Provisional	89.25
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	89.24
PLN02672	1082	methionine S-methyltransferase	88.79
PRK08114	395	cystathionine beta-lyase; Provisional	88.58
PRK06836	394	aspartate aminotransferase; Provisional	88.13
KOG0258|consensus	475		88.05
KOG0256|consensus	471		87.6
PRK13580	493	serine hydroxymethyltransferase; Provisional	86.97
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	86.64
KOG1360|consensus	570		86.56
PRK04366	481	glycine dehydrogenase subunit 2; Validated	86.36
PLN02414	993	glycine dehydrogenase (decarboxylating)	86.27
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	86.23
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	86.18
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	86.16
PRK04311	464	selenocysteine synthase; Provisional	85.99
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	85.46
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	84.96
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	84.49
KOG2862|consensus	385		83.77
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	83.3
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	83.28
PRK05968	389	hypothetical protein; Provisional	83.19
PRK05367	954	glycine dehydrogenase; Provisional	82.92
KOG0053|consensus	409		82.85
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	82.3
PRK00451	447	glycine dehydrogenase subunit 1; Validated	81.85
PRK10534	333	L-threonine aldolase; Provisional	81.71
PRK09275	527	aspartate aminotransferase; Provisional	81.54
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	81.23
KOG1357|consensus	519		80.52

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-30  Score=217.43  Aligned_cols=92  Identities=36%  Similarity=0.561  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchh
Q psy1628          17 LLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWA   96 (114)
Q Consensus        17 ~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~   96 (114)
                      ......+++|+.+.+...++   +++||+|+||+||+||+++||++|++++|++|++||++||+|||||||||||+ ||+
T Consensus       201 ~~~~~~~~~e~~i~~~~~~~---~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~-~fa  276 (447)
T COG0160         201 CGDDALEYIERALFDLEVGP---EEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGK-MFA  276 (447)
T ss_pred             hhHHHHHHHHHHHHhhcCCC---CceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-chh
Confidence            34556677888555544466   89999999999999999999999999999999999999999999999999998 999


Q ss_pred             hhhcCCCCCcCEEEeecC
Q psy1628          97 FQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        97 ~~~~g~~v~PDivt~gK~  114 (114)
                      +|++|  |+|||+|+||+
T Consensus       277 ~E~~g--v~PDivt~aK~  292 (447)
T COG0160         277 FEHFG--VEPDIVTLAKS  292 (447)
T ss_pred             hhhcC--CCCCEEEeccc
Confidence            99999  99999999996

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.97  E-value=2.8e-31  Score=218.86  Aligned_cols=106  Identities=26%  Similarity=0.415  Sum_probs=89.8

Q ss_pred             ccccchhHHHHHHHHHHHH-HHHHHHhc----C---------CCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHH
Q psy1628           6 LTECIIGRYIILLAVVHLF-FERIFLSA----S---------LYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHV   71 (114)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~-~e~~~~~~----~---------~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc   71 (114)
                      +.+-|||||+..++++.+. ..+-|..-    .         ...-+++++||+|+||+||+||+++|+++|++++|++|
T Consensus       135 ~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lC  214 (404)
T COG4992         135 FENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAIDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELC  214 (404)
T ss_pred             EcCCcCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhccCeEEEEEecccCCCCCCCCCHHHHHHHHHHH
Confidence            5678999999999987765 33333210    0         00012368999999999999999999999999999999


Q ss_pred             HHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          72 RAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        72 ~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++||+|||+||||||+||||+ +|++|++|  ++|||+|++|+
T Consensus       215 d~~g~LLI~DEVQtG~GRTGk-~fA~e~~g--V~PDI~tlaK~  254 (404)
T COG4992         215 DEHGALLILDEVQTGLGRTGK-LFAYEHYG--VEPDILTLAKA  254 (404)
T ss_pred             HHhCeEEEEeccccCCCccch-HHHHHHhC--CCCCEEEeecc
Confidence            999999999999999999998 99999999  99999999996

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.96  E-value=1.9e-29  Score=210.58  Aligned_cols=93  Identities=33%  Similarity=0.529  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628          12 GRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV   90 (114)
Q Consensus        12 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt   90 (114)
                      +....  +...+.||++++++  +|   ++|||||+||+++. ||+.+||++||+++|++|++||||||+|||+||||||
T Consensus       192 ~~~~~--~~~a~~le~~i~~~--g~---~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRT  264 (449)
T COG0161         192 GDEEF--AEAADELEALILEH--GP---ETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRT  264 (449)
T ss_pred             ChHHH--HHHHHHHHHHHHhc--Cc---ccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcC
Confidence            44444  56778999999997  57   89999999998776 9999999999999999999999999999999999999


Q ss_pred             CccchhhhhcCCCCCcCEEEeecC
Q psy1628          91 GTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        91 G~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      |+ +|++|++|  ++|||+|+||+
T Consensus       265 G~-~FA~e~~g--i~PDi~~~aKG  285 (449)
T COG0161         265 GK-MFACEHAG--IVPDILCLAKG  285 (449)
T ss_pred             ch-hhhhhhcC--CCCCeeeeccc
Confidence            98 99999999  99999999996

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.96  E-value=2.3e-29  Score=209.01  Aligned_cols=83  Identities=28%  Similarity=0.429  Sum_probs=77.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      +.++++++++   +   +++||+|+|| +||++|+++||++|++++|++|++||++||+|||||||||||+ ||+++++|
T Consensus       209 ~~l~~~l~~~---~---~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~-~fa~~~~g  281 (453)
T PRK06943        209 ADVRRLFAER---A---GKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGT-FFACEQAG  281 (453)
T ss_pred             HHHHHHHHhC---C---CceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcc-hhHHHhCC
Confidence            5667788764   3   7999999999 5999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++|||+|+||+
T Consensus       282 --v~PDivt~gKg  292 (453)
T PRK06943        282 --VWPDFLCLSKG  292 (453)
T ss_pred             --CCCCeEeeehh
Confidence              99999999996

>PRK05965 hypothetical protein; Provisional

Probab=99.95  E-value=1.1e-28  Score=205.09  Aligned_cols=84  Identities=35%  Similarity=0.590  Sum_probs=78.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++  ++   ++|||||+||+||++|+++||++|++++|++|++||++||+|||||||||||+ ||+++++| 
T Consensus       202 ~~l~~~i~~~--~~---~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~g-  274 (459)
T PRK05965        202 AALRAKVAEL--GA---DNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGP-LFACEAEG-  274 (459)
T ss_pred             HHHHHHHHhc--CC---CceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCch-hhhHhhcC-
Confidence            4677788764  23   79999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       275 -v~PDiv~~gKg  285 (459)
T PRK05965        275 -VVPDLMTVAKG  285 (459)
T ss_pred             -CCCCeEEechh
Confidence             99999999996

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.95  E-value=9.3e-29  Score=206.70  Aligned_cols=84  Identities=32%  Similarity=0.565  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      .+.++++++++   +   ++|||+|+|| +||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++
T Consensus       223 ~~~l~~~~~~~---~---~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~-~~a~e~~  295 (472)
T PRK08742        223 ADALQALFEQS---P---GEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGT-LFACEQA  295 (472)
T ss_pred             HHHHHHHHHhC---C---CceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chHHHhc
Confidence            35567777654   3   7999999999 6999999999999999999999999999999999999999998 9999999


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      |  ++|||+|+||+
T Consensus       296 g--v~PDiv~~gKg  307 (472)
T PRK08742        296 G--VMPDLLCLSKG  307 (472)
T ss_pred             C--CCCCEEEEccc
Confidence            9  99999999996

>PRK07482 hypothetical protein; Provisional

Probab=99.95  E-value=2.6e-28  Score=202.97  Aligned_cols=86  Identities=33%  Similarity=0.499  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628          21 VHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        21 ~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      ..+.++++++++  ++   ++|||+|+||+||++|+++||++|++++|++|++||+|||+|||||||||||+ +|+++++
T Consensus       205 ~~~~l~~~~~~~--~~---~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~~~~  278 (461)
T PRK07482        205 CADELEELILAE--GP---DTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGS-MFGSDHY  278 (461)
T ss_pred             HHHHHHHHHHhc--CC---CcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcc-hhhHHhc
Confidence            346678888654  23   78999999999999999999999999999999999999999999999999998 9999999


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      |  ++|||+|+||+
T Consensus       279 g--v~PDiv~~gKg  290 (461)
T PRK07482        279 G--IEPDLITVAKG  290 (461)
T ss_pred             C--CCCCEEEEccc
Confidence            9  99999999996

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.95  E-value=2.7e-28  Score=202.94  Aligned_cols=85  Identities=31%  Similarity=0.510  Sum_probs=75.7

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      ++++.+++...++   +++||+|+||+||++|+++||++|++++|++|++||+|||+|||||||||||+ +|+++++|  
T Consensus       211 ~~~~~~~~~~~~~---~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~-~~a~~~~g--  284 (459)
T PRK06931        211 YFENFIEDVESGV---RKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGK-MFAFEHAG--  284 (459)
T ss_pred             HHHHHHHhhhcCC---CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCch-HHHhhhcC--
Confidence            3455554321123   68999999999999999999999999999999999999999999999999998 99999999  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++|||+|+||+
T Consensus       285 v~PDivt~gK~  295 (459)
T PRK06931        285 IEPDIIVMSKA  295 (459)
T ss_pred             CCCCEEEeccc
Confidence            99999999996

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.95  E-value=4.1e-28  Score=202.21  Aligned_cols=87  Identities=33%  Similarity=0.548  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+++++++...++   ++|||+|+||+||++|+++||++|++++|++|++||+|||+|||||||||||+ ||+++++|
T Consensus       215 ~~~l~~~i~~~~~~~---~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~-~~a~e~~g  290 (464)
T PRK06938        215 LHYLENLLDDPESGV---VLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGK-MFAFEHAG  290 (464)
T ss_pred             HHHHHHHHHhhccCC---CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcH-HHHHHhcC
Confidence            456777887542122   58999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++|||+|+||+
T Consensus       291 --v~PDiv~~gKg  301 (464)
T PRK06938        291 --IIPDVVVLSKA  301 (464)
T ss_pred             --CCCCEEEeecc
Confidence              99999999996

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.95  E-value=2.7e-28  Score=203.41  Aligned_cols=83  Identities=28%  Similarity=0.398  Sum_probs=77.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      +.++++++++   +   +++||+|+|| +||++|++++|++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus       202 ~~le~~~~~~---~---~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~-~~a~~~~g  274 (466)
T PRK07030        202 AHMEQTLAEH---H---DEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGT-MFACEQAG  274 (466)
T ss_pred             HHHHHHHHhC---C---CceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcccc-chHHHhcC
Confidence            4567778754   3   7999999999 6999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++|||+|+||+
T Consensus       275 --v~PDiv~~gKg  285 (466)
T PRK07030        275 --IRPDFLCLSKA  285 (466)
T ss_pred             --CCCCEEeeehh
Confidence              99999999996

>PRK07678 aminotransferase; Validated

Probab=99.95  E-value=4.2e-28  Score=201.05  Aligned_cols=83  Identities=29%  Similarity=0.548  Sum_probs=76.9

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      ++++++++.  ++   +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|++|++|  
T Consensus       201 ~l~~~~~~~--~~---~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~g--  272 (451)
T PRK07678        201 EIDRVMTWE--LS---ETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGK-AFGFMNYG--  272 (451)
T ss_pred             HHHHHHHhc--CC---CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCch-hHHHHhcC--
Confidence            467777643  23   79999999999999999999999999999999999999999999999999998 99999999  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++|||+|+||+
T Consensus       273 v~PDivt~gK~  283 (451)
T PRK07678        273 VKPDIITMAKG  283 (451)
T ss_pred             CCCCEEEeecc
Confidence            99999999995

>KOG1401|consensus

Probab=99.95  E-value=8.1e-28  Score=198.40  Aligned_cols=101  Identities=32%  Similarity=0.451  Sum_probs=93.8

Q ss_pred             cccccchhHHHHHHHHH-----------------------HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCH
Q psy1628           5 VLTECIIGRYIILLAVV-----------------------HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPA   61 (114)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-----------------------~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~   61 (114)
                      -+.+|+|||+...+++.                       .+++++++++|.      ++|||+|+||+||+||+.|+.+
T Consensus       153 af~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~------~~IaAVIvEPiqGaGG~~p~~p  226 (433)
T KOG1401|consen  153 AFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHK------GEIAAVIVEPIQGAGGIIPADP  226 (433)
T ss_pred             EEecCcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCC------CceEEEEEecccCCCCcccCCH
Confidence            46789999999888732                       357899999986      7999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +|++.||++|+++|+++|+|||||||||+|. .|++++++  ++|||+|+||.
T Consensus       227 eFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~-~~a~e~~~--~~PDI~t~aK~  276 (433)
T KOG1401|consen  227 EFLIGLRKECDDNGVLLIFDEVQTGLGRLGY-GWAQEYFG--VTPDITTVAKP  276 (433)
T ss_pred             HHHHHHHHHHhhcCceEEeehhhhCccccch-HHHHHHhC--cCCcceeehhh
Confidence            9999999999999999999999999999998 99999999  99999999994

>PRK07481 hypothetical protein; Provisional

Probab=99.95  E-value=1.5e-27  Score=197.60  Aligned_cols=88  Identities=35%  Similarity=0.563  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628          19 AVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ   98 (114)
Q Consensus        19 ~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~   98 (114)
                      ....+++|+.++..  ++   ++|||||+||+||++|+++|+++|++++|++|++||++||+|||||||||||+ +|+++
T Consensus       196 ~~~~~~le~~i~~~--~~---~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~  269 (449)
T PRK07481        196 RICARLLEREIAFQ--GP---DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGS-WFGSR  269 (449)
T ss_pred             HHHHHHHHHHHHhc--CC---CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCch-hhHhh
Confidence            34456677777643  24   79999999999999999999999999999999999999999999999999998 99999


Q ss_pred             hcCCCCCcCEEEeecC
Q psy1628          99 LQGDDIIPDIVTVVWN  114 (114)
Q Consensus        99 ~~g~~v~PDivt~gK~  114 (114)
                      ++|  ++|||+|+||+
T Consensus       270 ~~g--v~PDiv~~gKg  283 (449)
T PRK07481        270 GWG--VKPDIMCLAKG  283 (449)
T ss_pred             hcC--CCCCEEEEeec
Confidence            999  99999999996

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.94  E-value=2.2e-27  Score=190.11  Aligned_cols=72  Identities=43%  Similarity=0.628  Sum_probs=68.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++|||+|+||+||++|+.+++++|++++|++|++||+++|+|||||||||||+ +|++++++  ++||++|+||+
T Consensus       176 ~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~-~~a~~~~g--v~PDiv~~gK~  247 (339)
T PF00202_consen  176 DEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGK-FFASEHYG--VDPDIVTFGKG  247 (339)
T ss_dssp             GGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSS-SSGHHHHT--SSSSEEEEEGG
T ss_pred             CcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCC-ccceeccc--ccCcccccccc
Confidence            79999999999999999999999999999999999999999999999999998 99999999  99999999996

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.94  E-value=1.7e-27  Score=200.55  Aligned_cols=84  Identities=32%  Similarity=0.504  Sum_probs=77.0

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      ..+|+++.+.  ++   +++||||+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++| 
T Consensus       247 ~~le~~l~~~--~~---~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~-~~a~e~~g-  319 (504)
T PLN02760        247 DNLENLILKE--GP---ETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGT-MFGCDKYN-  319 (504)
T ss_pred             HHHHHHHHhc--CC---CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccch-hhHHHhcC-
Confidence            3467766543  23   78999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       320 -v~PDivtlgK~  330 (504)
T PLN02760        320 -IKPDLVSLAKA  330 (504)
T ss_pred             -CCCcEEEeccc
Confidence             99999999996

>PRK07483 hypothetical protein; Provisional

Probab=99.94  E-value=2.4e-27  Score=196.30  Aligned_cols=84  Identities=30%  Similarity=0.461  Sum_probs=76.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQS-CGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g-~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      +.+++.+.+.  ++   +++||+|+||+|| ++|+++|+++|++++|++|++||++||+|||||||||||+ ||+++++|
T Consensus       186 ~~l~~~~~~~--~~---~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~a~~~~g  259 (443)
T PRK07483        186 DELEAKILEL--GP---DTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGT-LFACEEDG  259 (443)
T ss_pred             HHHHHHHHhc--CC---CceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcH-HHHHhhcC
Confidence            4566656543  24   7999999999999 5899999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++|||+|+||+
T Consensus       260 --v~PDiv~~gK~  270 (443)
T PRK07483        260 --VAPDLVTIAKG  270 (443)
T ss_pred             --CCCCeeeehhh
Confidence              99999999996

>PRK07480 putative aminotransferase; Validated

Probab=99.94  E-value=3.1e-27  Score=196.46  Aligned_cols=84  Identities=39%  Similarity=0.592  Sum_probs=76.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+.+.  ++   +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++| 
T Consensus       206 ~~l~~~~~~~--~~---~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g-  278 (456)
T PRK07480        206 RQLEAKILEL--GA---DNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGE-WFGSQHFG-  278 (456)
T ss_pred             HHHHHHHHhc--CC---CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhhhhhcC-
Confidence            4555555443  23   79999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       279 -v~PDiv~~gK~  289 (456)
T PRK07480        279 -IKPDLMTIAKG  289 (456)
T ss_pred             -CCCCeeeeehh
Confidence             99999999995

>PRK12403 putative aminotransferase; Provisional

Probab=99.94  E-value=4.2e-27  Score=195.64  Aligned_cols=84  Identities=35%  Similarity=0.563  Sum_probs=76.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+.+.  ++   +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++| 
T Consensus       209 ~~le~~~~~~--~~---~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~e~~g-  281 (460)
T PRK12403        209 LQLEEKILEL--GA---ENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGE-WFAHEHFG-  281 (460)
T ss_pred             HHHHHHHHHh--CC---CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhhhhhcC-
Confidence            3455555543  23   79999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       282 -v~PDiv~~gK~  292 (460)
T PRK12403        282 -FEPDTLSIAKG  292 (460)
T ss_pred             -CCCCeEEEccc
Confidence             99999999996

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.94  E-value=5.2e-27  Score=194.31  Aligned_cols=83  Identities=29%  Similarity=0.404  Sum_probs=77.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.++++++++   +   +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++| 
T Consensus       213 ~~~~~~i~~~---~---~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g-  284 (443)
T PRK08297        213 AQARAAFERH---P---HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG-  284 (443)
T ss_pred             HHHHHHHHhC---C---CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccch-HHHHHhcC-
Confidence            3456777764   3   89999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       285 -v~PDiv~~gK~  295 (443)
T PRK08297        285 -VRPDIVAFGKK  295 (443)
T ss_pred             -CCCCEEEeccc
Confidence             99999999995

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.94  E-value=6.9e-27  Score=194.36  Aligned_cols=83  Identities=28%  Similarity=0.424  Sum_probs=77.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      +.++++++++   +   +++||+|+|| +||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus       211 ~~l~~~l~~~---~---~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~-~~a~~~~g  283 (460)
T PRK06916        211 EELEELLKEK---H---EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGK-MFACEHEN  283 (460)
T ss_pred             HHHHHHHHhC---C---CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCch-hhHHHhcC
Confidence            4567778754   3   7999999999 6999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++|||+|+||+
T Consensus       284 --v~PDiv~~gK~  294 (460)
T PRK06916        284 --VTPDIMTAGKG  294 (460)
T ss_pred             --CCCCeeeeehh
Confidence              99999999995

>PRK06105 aminotransferase; Provisional

Probab=99.94  E-value=1.3e-26  Score=192.66  Aligned_cols=85  Identities=33%  Similarity=0.519  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+|+++++.  ++   +++||+|+||+||++|++++|++|++++|++|++||++||+|||||||||||+ +|++++++
T Consensus       204 ~~~le~~~~~~--~~---~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~-~f~~~~~~  277 (460)
T PRK06105        204 ANELEALILAE--GP---DTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGN-MFGCETFG  277 (460)
T ss_pred             HHHHHHHHHHc--CC---CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCch-hhhHHhcC
Confidence            35678888653  23   79999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++|||+|+||+
T Consensus       278 --v~PDi~~~gK~  288 (460)
T PRK06105        278 --IKPDILVMSKQ  288 (460)
T ss_pred             --CCCCeeeeecc
Confidence              99999999996

>PRK07036 hypothetical protein; Provisional

Probab=99.94  E-value=1.3e-26  Score=193.13  Aligned_cols=84  Identities=36%  Similarity=0.534  Sum_probs=76.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh-hcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ-LQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~-~~g  101 (114)
                      ..+++.+.+.  ++   +++||||+||+||++|+++||++|++++|++|++||+++|+|||||||||||+ +|+++ ++|
T Consensus       207 ~~~~~~i~~~--~~---~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~~~~~~~g  280 (466)
T PRK07036        207 DEFEDKILSL--GA---DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGH-FFASEAVFG  280 (466)
T ss_pred             HHHHHHHHHc--CC---CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCch-hhhhhhhcC
Confidence            3456666543  34   79999999999999999999999999999999999999999999999999998 99999 789


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++|||+|+||+
T Consensus       281 --v~PDivt~gK~  291 (466)
T PRK07036        281 --IQPDIITFAKG  291 (466)
T ss_pred             --CCCCEEEEccc
Confidence              99999999996

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.94  E-value=1e-26  Score=193.31  Aligned_cols=104  Identities=26%  Similarity=0.387  Sum_probs=86.9

Q ss_pred             cccccchhHHHHHHHHHH-----------------------HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCH
Q psy1628           5 VLTECIIGRYIILLAVVH-----------------------LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPA   61 (114)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-----------------------~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~   61 (114)
                      .+...+||++...+++..                       +.+++.+++...++   +++||+|+||+||++|+.+||+
T Consensus       168 ~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~---~~vAavIvEpv~g~gG~~~p~~  244 (442)
T TIGR03372       168 AASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTG---DDVAAIILEPIQGEGGVILPPE  244 (442)
T ss_pred             EECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCC---CcEEEEEEeCccCCCCcccCCH
Confidence            456678888877766521                       23344554311123   7899999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +|+++++++|++||+++|+|||||||||||+ ||+++++|  ++|||+|+||+
T Consensus       245 ~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~g--v~PDivt~gK~  294 (442)
T TIGR03372       245 GYLPAVRALCDEFGALLILDEVQTGMGRTGK-MFACEHEG--VQPDILCLAKA  294 (442)
T ss_pred             HHHHHHHHHHHHcCCEEEEeecccCCCcccc-chhhhhcC--CCCCeeeehhh
Confidence            9999999999999999999999999999998 99999999  99999999996

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.94  E-value=1.1e-26  Score=191.83  Aligned_cols=82  Identities=24%  Similarity=0.413  Sum_probs=75.9

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      .+++.++++   +   +++||+|+||+ ||++|+++||++|+++++++|++||++||+|||+|||||||+ +|+++++| 
T Consensus       195 ~l~~~i~~~---~---~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g-  266 (429)
T PRK06173        195 PLQDLLEQK---G---DEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGK-LFALEHAG-  266 (429)
T ss_pred             HHHHHHHhC---C---CcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCc-chHHHhcC-
Confidence            356777654   2   79999999997 999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       267 -v~PDiv~~gK~  277 (429)
T PRK06173        267 -VVPDIMCIGKA  277 (429)
T ss_pred             -CCCCEEEeehh
Confidence             99999999996

>PRK06917 hypothetical protein; Provisional

Probab=99.94  E-value=1.2e-26  Score=192.26  Aligned_cols=84  Identities=27%  Similarity=0.433  Sum_probs=76.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      +.+++.++++.  +   +++||+|+||+||+ ||+++||++|++++|++|++||+++|+|||+|||||||+ +|++++++
T Consensus       186 ~~le~~i~~~~--~---~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~-~~a~~~~g  259 (447)
T PRK06917        186 TELETAIERIG--A---EHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGA-MFAMEHWG  259 (447)
T ss_pred             HHHHHHHHhcC--C---CceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccc-hhhHHhcC
Confidence            46777787652  3   68999999999995 789999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++||++|+||+
T Consensus       260 --v~PDi~~~gK~  270 (447)
T PRK06917        260 --VEPDIMTLGKG  270 (447)
T ss_pred             --CCCCEEEeeeh
Confidence              99999999996

>PRK06062 hypothetical protein; Provisional

Probab=99.94  E-value=1.4e-26  Score=192.15  Aligned_cols=84  Identities=35%  Similarity=0.614  Sum_probs=77.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.++++++.+  ++   +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++| 
T Consensus       201 ~~le~~l~~~--~~---~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~-~~a~~~~g-  273 (451)
T PRK06062        201 AHLERVIELE--GP---STIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGK-WFAIEHFG-  273 (451)
T ss_pred             HHHHHHHHhc--CC---CceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcH-HHHHHhcC-
Confidence            4577777653  23   78999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       274 -v~PDi~t~gK~  284 (451)
T PRK06062        274 -VVPDLITFAKG  284 (451)
T ss_pred             -CCCCeeeechh
Confidence             99999999996

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.94  E-value=1.6e-26  Score=192.61  Aligned_cols=104  Identities=26%  Similarity=0.377  Sum_probs=87.9

Q ss_pred             cccccchhHHHHHHHHH-----------------------HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCH
Q psy1628           5 VLTECIIGRYIILLAVV-----------------------HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPA   61 (114)
Q Consensus         5 ~~~~~~~~~~~~~~~~~-----------------------~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~   61 (114)
                      .+..++||++...++..                       .+.+++.+++....+   +++||+|+||+||++|+++||+
T Consensus       175 ~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~---~~iAavIvEpv~g~~G~~~pp~  251 (459)
T PRK11522        175 ATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTG---DDVAAVILEPIQGEGGVILPPE  251 (459)
T ss_pred             EecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccC---CcEEEEEEecccCCCCCccCCH
Confidence            35567888877666542                       134566665421123   6899999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +|+++++++|++||+++|+|||||||||||+ +|+++++|  ++|||+|+||+
T Consensus       252 ~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~~a~e~~g--v~PDivt~gK~  301 (459)
T PRK11522        252 GYLTAVRKLCDEFGALLILDEVQTGMGRTGK-MFACEHEN--VQPDILCLAKA  301 (459)
T ss_pred             HHHHHHHHHHHHcCCEEEeccceecCCccch-hhhhhccC--CCCCEEEechh
Confidence            9999999999999999999999999999998 99999999  99999999996

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.93  E-value=2.7e-26  Score=202.65  Aligned_cols=90  Identities=21%  Similarity=0.232  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHhcC--CCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccch
Q psy1628          19 AVVHLFFERIFLSAS--LYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWW   95 (114)
Q Consensus        19 ~~~~~~~e~~~~~~~--~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~   95 (114)
                      ..+.+++++.+++..  .++   ++|||+|+||+ ||+||+++|+++|++++|++|++||++||+|||+|||||||+ +|
T Consensus       563 ~~~~~~le~~l~~~~~~~~~---~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~-~f  638 (817)
T PLN02974        563 KAYRSYIEQQLDEYEASAKN---GHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGV-ES  638 (817)
T ss_pred             HHHHHHHHHHHHhhccccCC---CCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccc-hh
Confidence            345578888887511  134   79999999995 899999999999999999999999999999999999999998 99


Q ss_pred             hhhhcCCCCCcCEEEeecC
Q psy1628          96 AFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        96 ~~~~~g~~v~PDivt~gK~  114 (114)
                      +++++|  ++|||+|+||+
T Consensus       639 a~e~~g--v~PDIi~~gKg  655 (817)
T PLN02974        639 AWELLG--CKPDIACYAKL  655 (817)
T ss_pred             hHHhcC--CCCCEEeeccc
Confidence            999999  99999999996

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.93  E-value=2.7e-26  Score=192.08  Aligned_cols=82  Identities=26%  Similarity=0.393  Sum_probs=76.3

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .++++++++.      +++||+|+||+||++|+++|+++|++++|++|++||++||+|||||||||||+ +|+++++|  
T Consensus       240 ~l~~~l~~~~------~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~-~fa~e~~g--  310 (464)
T TIGR00699       240 EVEDLIKKWH------KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGK-FWAHEHWN--  310 (464)
T ss_pred             HHHHHHHhcC------CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcc-hhHHHhcC--
Confidence            4677777642      68999999999999999999999999999999999999999999999999998 99999999  


Q ss_pred             CC--cCEEEeecC
Q psy1628         104 II--PDIVTVVWN  114 (114)
Q Consensus       104 v~--PDivt~gK~  114 (114)
                      ++  |||+|+||+
T Consensus       311 v~~~PDi~t~gK~  323 (464)
T TIGR00699       311 LDDPPDMVTFSKK  323 (464)
T ss_pred             CCCCCCEEEehhh
Confidence            86  999999996

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=4.4e-26  Score=189.73  Aligned_cols=86  Identities=33%  Similarity=0.565  Sum_probs=77.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+.++..++   +++||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++| 
T Consensus       207 ~~le~~l~~~~~~~---~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g-  281 (457)
T PRK05639        207 DYLENYVFSHVVPP---DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGK-WFASEWFE-  281 (457)
T ss_pred             HHHHHHHHHhhcCC---CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCch-HHHHHhcC-
Confidence            45666665431123   79999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       282 -v~PDiv~~gK~  292 (457)
T PRK05639        282 -VKPDLIIFGKG  292 (457)
T ss_pred             -CCCCEEEechh
Confidence             99999999996

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.93  E-value=5e-26  Score=189.33  Aligned_cols=81  Identities=26%  Similarity=0.437  Sum_probs=73.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.++++++++       +++||+|+||+||. |+.+||++|++++|++|++||++||+|||||||||||+ +|+++++| 
T Consensus       218 ~~l~~~i~~~-------~~vAavIvEPv~g~-g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~-~fa~e~~g-  287 (459)
T PRK06082        218 DYLEYVIEKE-------GGIGAFIAEAVRNT-DVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGE-WFTHQAYG-  287 (459)
T ss_pred             HHHHHHHhcC-------CCEEEEEECCccCC-CCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hhHhHhhC-
Confidence            3467666542       58999999999997 58889999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       288 -v~PDiv~~gKg  298 (459)
T PRK06082        288 -IEPDILCIGKG  298 (459)
T ss_pred             -CCCCEEEeccc
Confidence             99999999996

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.93  E-value=9.7e-26  Score=184.62  Aligned_cols=85  Identities=31%  Similarity=0.529  Sum_probs=77.2

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .++++++++..++   +++||+|+||+||++|+++||++|+++++++|++||+++|+|||||||||||+ +|++++++  
T Consensus       180 ~l~~~~~~~~~~~---~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~a~~~~~--  253 (412)
T TIGR02407       180 YFEKLLEDSSSGV---DLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGT-FFSFEPAG--  253 (412)
T ss_pred             HHHHHHHhccCCC---CceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccch-hHHhcccC--
Confidence            4677777653223   58999999999999999999999999999999999999999999999999998 99999999  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      +.||++++||+
T Consensus       254 v~PDi~~~~K~  264 (412)
T TIGR02407       254 IEPDIVCLSKS  264 (412)
T ss_pred             CCCCEEEechh
Confidence            99999999996

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.93  E-value=1.2e-25  Score=185.70  Aligned_cols=85  Identities=33%  Similarity=0.524  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      ++++.+++....+   +++||+|+||+||++|+.+||++|++++|++|++||++||+|||||||||||+ +|++++++  
T Consensus       192 ~~~~~~~~~~~~~---~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~-~~a~~~~g--  265 (442)
T TIGR00709       192 YFENFIEDVESGV---DKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGT-MFAFEHAG--  265 (442)
T ss_pred             HHHHHHHhhccCC---CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHHcC--
Confidence            4555554321123   68999999999999999999999999999999999999999999999999998 99999999  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++||++|+||+
T Consensus       266 v~PDiv~~gK~  276 (442)
T TIGR00709       266 IEPDFVVMSKA  276 (442)
T ss_pred             CCCcEEEEccc
Confidence            99999999996

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.93  E-value=7.9e-26  Score=186.24  Aligned_cols=82  Identities=32%  Similarity=0.448  Sum_probs=76.3

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .+++.++++   +   +++||+|+||+||++|+++||++|+++++++|++||++||+|||||||||||+ +|+++++|  
T Consensus       207 ~~~~~~~~~---~---~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~a~~~~g--  277 (431)
T TIGR03251       207 QARAAFAER---P---HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGT-AWAYQQLG--  277 (431)
T ss_pred             HHHHHHHhC---C---CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccch-HHHHHhcC--
Confidence            456677654   3   79999999999999999999999999999999999999999999999999998 99999999  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++||++|+||+
T Consensus       278 v~PDi~~~gK~  288 (431)
T TIGR03251       278 VQPDIVAFGKK  288 (431)
T ss_pred             CCCCEEEeccc
Confidence            99999999995

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.92  E-value=1.9e-25  Score=184.97  Aligned_cols=85  Identities=29%  Similarity=0.432  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+|+.++.+  ++   +++||+|+||++|++|+++|+++|++++|++|++||++||+|||||||||||+ +|+++++|
T Consensus       201 ~~~le~~l~~~--~~---~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g  274 (442)
T PRK13360        201 ADELERLVTLH--DA---STIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-PFAAQYFG  274 (442)
T ss_pred             HHHHHHHHHhc--CC---CcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcC
Confidence            34677788754  23   79999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++||++|+||+
T Consensus       275 --v~PDivt~gK~  285 (442)
T PRK13360        275 --VTPDLLTCAKG  285 (442)
T ss_pred             --CCCceeeeeec
Confidence              99999999996

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.92  E-value=1.5e-25  Score=184.89  Aligned_cols=72  Identities=38%  Similarity=0.682  Sum_probs=70.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++||+|+||+||++|+++|+++|++++|++|++||+++|+|||||||||||+ +|+++++|  ++||++|+||+
T Consensus       218 ~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~-~fa~~~~g--v~PDiv~~gK~  289 (443)
T PRK06058        218 DNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGA-WFACEHEG--IVPDLITTAKG  289 (443)
T ss_pred             CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChh-hhHHHhcC--CCCCEEEEccc
Confidence            78999999999999999999999999999999999999999999999999998 99999999  99999999996

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.92  E-value=1.7e-25  Score=184.36  Aligned_cols=72  Identities=28%  Similarity=0.392  Sum_probs=69.9

Q ss_pred             CceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++||+|+||+ ||++|+.+|+++|++++|++|++||++||+|||||||||||+ +|+++++|  ++|||+|+||+
T Consensus       199 ~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~-~~a~~~~g--v~PDi~t~gK~  271 (422)
T PRK05630        199 ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGE-LFATLAAG--VTPDIMCVGKA  271 (422)
T ss_pred             hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCch-hhHHHhcC--CCCCeeeeech
Confidence            58999999996 999999999999999999999999999999999999999998 99999999  99999999996

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.92  E-value=2.9e-25  Score=182.21  Aligned_cols=86  Identities=31%  Similarity=0.537  Sum_probs=77.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++..++   +++||+|+||+||++|+++++++|+++++++|++||+++|+|||+|||||||+ +|++++++ 
T Consensus       183 ~~l~~~l~~~~~~~---~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~-~~~~~~~~-  257 (425)
T PRK09264        183 AYLEKLLEDSSSGV---DLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGT-FFSFERAG-  257 (425)
T ss_pred             HHHHHHHHhccCCC---CceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccH-HHHHhhcC-
Confidence            35677776642122   58999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++|+||+
T Consensus       258 -v~PDi~t~~K~  268 (425)
T PRK09264        258 -ITPDIVTLSKS  268 (425)
T ss_pred             -CCCCEEEeccc
Confidence             99999999996

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.92  E-value=3.6e-25  Score=183.46  Aligned_cols=84  Identities=29%  Similarity=0.448  Sum_probs=78.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.++++++.+  ++   +++||+|+||+||++|+++|+++|+++++++|++||++||+|||||||||||+ +|++++++ 
T Consensus       205 ~~l~~~i~~~--~~---~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~-~~~~~~~g-  277 (445)
T PRK09221        205 DDLERLVALH--DA---STIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA-AFAAERFG-  277 (445)
T ss_pred             HHHHHHHHhc--CC---CcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCch-hhHHHhcC-
Confidence            5677888764  23   79999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       278 -v~PDi~~~gK~  288 (445)
T PRK09221        278 -VTPDIITFAKG  288 (445)
T ss_pred             -CCCCEEEeccc
Confidence             99999999996

>PRK06148 hypothetical protein; Provisional

Probab=99.92  E-value=4.5e-25  Score=198.00  Aligned_cols=87  Identities=55%  Similarity=0.906  Sum_probs=76.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++.....+   +++||||+||+||++|+++||++|++++|++|++||+++|+|||||||||||+.||+++++| 
T Consensus       769 ~~l~~~i~~~~~~~---~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~g-  844 (1013)
T PRK06148        769 ESVAEQIAAMAAKG---RGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQG-  844 (1013)
T ss_pred             HHHHHHHHhhhccC---CceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcC-
Confidence            34555554311123   78999999999999999999999999999999999999999999999999995489999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       845 -v~PDivt~gK~  855 (1013)
T PRK06148        845 -VVPDIVTMGKP  855 (1013)
T ss_pred             -CCcceeeeccc
Confidence             99999999996

>KOG1402|consensus

Probab=99.92  E-value=1.8e-25  Score=181.89  Aligned_cols=80  Identities=31%  Similarity=0.468  Sum_probs=75.1

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .+|..|++        .++||+|+||+||++|++.||++||+++|+||++|++++|+||||||++|||+ ||+.++-.  
T Consensus       198 ale~~l~~--------~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk-~la~d~en--  266 (427)
T KOG1402|consen  198 ALEVALKS--------PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGK-LLACDYEN--  266 (427)
T ss_pred             HHHHHhcC--------CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCc-EEEeehhh--
Confidence            46666655        59999999999999999999999999999999999999999999999999998 99999988  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++||++.+||+
T Consensus       267 v~PDivilgKa  277 (427)
T KOG1402|consen  267 VRPDIVILGKA  277 (427)
T ss_pred             cCCCeEEEecc
Confidence            99999999995

>KOG1404|consensus

Probab=99.92  E-value=1.3e-25  Score=185.08  Aligned_cols=88  Identities=42%  Similarity=0.723  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628          19 AVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ   98 (114)
Q Consensus        19 ~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~   98 (114)
                      +.+-+.+|..+...  .+   +.|||+|+||+||.||++.+|++||++++++||++|.++|+|||||||||||. ||+||
T Consensus       195 d~~a~~l~d~i~~~--~~---~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~-~wgfe  268 (442)
T KOG1404|consen  195 DRYAKELEDLILYD--GP---ETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGH-MWGFE  268 (442)
T ss_pred             HHHHHHHHHHHHhc--CC---CceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccc-ccccc
Confidence            34455666666543  45   78999999999999999999999999999999999999999999999999996 99999


Q ss_pred             hcCCCCCcCEEEeecC
Q psy1628          99 LQGDDIIPDIVTVVWN  114 (114)
Q Consensus        99 ~~g~~v~PDivt~gK~  114 (114)
                      .++  +.|||+||+|+
T Consensus       269 ~h~--v~PDIvTmAKg  282 (442)
T KOG1404|consen  269 SHG--VVPDIVTMAKG  282 (442)
T ss_pred             ccC--CCccHHHHHhh
Confidence            999  99999999996

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.91  E-value=1e-24  Score=180.29  Aligned_cols=82  Identities=32%  Similarity=0.478  Sum_probs=75.8

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      .+++.++++   +   +++||+|+||+ +|++|+.+++++|+++++++|++||++||+|||+|||||||+ +|+++++| 
T Consensus       193 ~l~~~l~~~---~---~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~-~fa~~~~g-  264 (428)
T PRK07986        193 PFARLMAAH---R---HEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGK-LFACEHAG-  264 (428)
T ss_pred             HHHHHHHhC---C---CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCC-eeeecccC-
Confidence            457777654   2   79999999996 999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       265 -v~PDi~t~gK~  275 (428)
T PRK07986        265 -IAPDILCLGKA  275 (428)
T ss_pred             -CCCCEEEechh
Confidence             99999999996

>PRK06541 hypothetical protein; Provisional

Probab=99.91  E-value=2.3e-24  Score=179.40  Aligned_cols=84  Identities=30%  Similarity=0.421  Sum_probs=77.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++  ++   +++||+|+||+|+.+|++++|++|+++++++|++||+++|+|||+|||||||+ +|+++++| 
T Consensus       208 ~~l~~~l~~~--~~---~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~-~~a~~~~g-  280 (460)
T PRK06541        208 DRIEEAIEFE--GP---DTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGE-MFGCERFG-  280 (460)
T ss_pred             HHHHHHHHhc--CC---CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-hhhhhhcC-
Confidence            4577777653  23   79999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       281 -v~PDivt~gK~  291 (460)
T PRK06541        281 -YVPDIITCAKG  291 (460)
T ss_pred             -CCCCEEEeccc
Confidence             99999999996

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.91  E-value=4.4e-24  Score=176.82  Aligned_cols=86  Identities=24%  Similarity=0.422  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.++++++++. .+   +++||+|+||+||++|+++||++|+++++++|++||+++|+|||+|||||||+ +|+++++|
T Consensus       192 ~~~~~~~~~~~~-~~---~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~-~~a~~~~g  266 (445)
T PRK08593        192 LAPLKEMFEKYL-PA---DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGK-WSSISHFN  266 (445)
T ss_pred             HHHHHHHHHhhc-CC---CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCch-HHHHHhcC
Confidence            355666666531 23   78999999999999999999999999999999999999999999999999998 99999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        ++||++|+||+
T Consensus       267 --v~pDi~t~gK~  277 (445)
T PRK08593        267 --ITPDLMSFGKS  277 (445)
T ss_pred             --CCCCEeeeccc
Confidence              99999999996

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.91  E-value=2e-24  Score=175.54  Aligned_cols=71  Identities=28%  Similarity=0.433  Sum_probs=69.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++||+|+||+||++|+.+++++|++++|++|++||+++|+||||||| |||+ +|++++++  ++||++|+||+
T Consensus       161 ~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~-RtG~-~~a~~~~g--v~PDiv~~gK~  231 (364)
T PRK04013        161 KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGK-FLAIEHYK--VEPDIVTMGKG  231 (364)
T ss_pred             CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcC-CCCc-hhHHHhcC--CCCCEEEeccc
Confidence            589999999999999999999999999999999999999999999999 9998 99999999  99999999996

>PRK06149 hypothetical protein; Provisional

Probab=99.90  E-value=3.6e-24  Score=191.29  Aligned_cols=73  Identities=47%  Similarity=0.893  Sum_probs=70.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++||||+||+||++|++++|++|+++++++|++||+++|+|||||||||||+.+|+++++|  ++|||+|+||+
T Consensus       743 ~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~g--v~PDivt~gK~  815 (972)
T PRK06149        743 RGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQG--VVPDIITMAKG  815 (972)
T ss_pred             CceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcC--CCCCEEEeccc
Confidence            79999999999999999999999999999999999999999999999999997467999999  99999999996

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.90  E-value=4.2e-24  Score=175.73  Aligned_cols=82  Identities=22%  Similarity=0.210  Sum_probs=74.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      +++||+|+||+||++|+++|+++|++++|++|++||++||+||||||| |||. +|+++++| 
T Consensus       188 ~~l~~~l~~~~------~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~-Rt~~-~~a~~~~g-  258 (428)
T PRK12389        188 EALKEALDKWG------DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAF-RFMY-GGAQDLLG-  258 (428)
T ss_pred             HHHHHHHHhcC------CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccccc-ccCc-chhhHHhC-
Confidence            35567776542      789999999999999999999999999999999999999999999999 9997 78889999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       259 -v~PDivt~gK~  269 (428)
T PRK12389        259 -VEPDLTALGKI  269 (428)
T ss_pred             -CCCCeeeechh
Confidence             99999999996

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.90  E-value=3.5e-24  Score=174.82  Aligned_cols=72  Identities=33%  Similarity=0.526  Sum_probs=70.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++|+|+||+++++|+++||++|+++++++|++||+++|+|||||||||||+ +|++++++  ++||++|+||+
T Consensus       178 ~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~-~~a~~~~g--v~PDi~t~gK~  249 (395)
T PRK03715        178 DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGT-LFAYELSG--IEPDIMTLGKG  249 (395)
T ss_pred             CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcc-hhhHhhcC--CCCceeeehhh
Confidence            57999999999999999999999999999999999999999999999999998 99999999  99999999996

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.90  E-value=8.7e-24  Score=173.28  Aligned_cols=84  Identities=35%  Similarity=0.612  Sum_probs=76.0

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .+++++++.. .+   +++||+|+||++|++|+++|+++|+++++++|++||+++|+|||+|||||+|+ +|++++++  
T Consensus       194 ~l~~~~~~~~-~~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~-~~~~~~~g--  266 (433)
T PRK08117        194 DLESLFKHQV-TP---EEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGE-WFAAQTFG--  266 (433)
T ss_pred             HHHHHHHhcc-CC---CcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCcccc-chhHhhcC--
Confidence            4667776521 23   78999999999999999999999999999999999999999999999999998 88889999  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++||++|+||+
T Consensus       267 v~pDi~t~sK~  277 (433)
T PRK08117        267 VVPDIMTIAKG  277 (433)
T ss_pred             CCCCEeehhhh
Confidence            99999999996

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.90  E-value=1.2e-23  Score=172.15  Aligned_cols=84  Identities=31%  Similarity=0.469  Sum_probs=75.2

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .+++.+.... ++   +++||+|+||+||++|+.+++++|+++++++|++||+++|+|||+|||||+|+ +|++++++  
T Consensus       184 ~~~~~~~~~~-~~---~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~-~~a~~~~~--  256 (420)
T TIGR00700       184 AARAIFVIDV-GA---NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGA-MFACEHEG--  256 (420)
T ss_pred             HHHHHHHhhc-CC---CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccch-hHHHhhcC--
Confidence            4555554221 23   79999999999999999999999999999999999999999999999999998 89999998  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      +.||++++||+
T Consensus       257 ~~pDi~~lsK~  267 (420)
T TIGR00700       257 PEPDLITTAKS  267 (420)
T ss_pred             CCCCEEEeecc
Confidence            99999999996

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.90  E-value=9.7e-24  Score=172.55  Aligned_cols=84  Identities=29%  Similarity=0.447  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      .+.+++.++++   +   +++||+|+|| +|+++|+.+++++|+++++++|++||+++|+|||+|||||||+ +|+++++
T Consensus       186 ~~~l~~~l~~~---~---~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~  258 (423)
T PRK05964        186 LDALEALLEKH---A---GEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGT-LFACEQA  258 (423)
T ss_pred             HHHHHHHHHhC---C---CcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcc-hhHHHhc
Confidence            45567777754   2   7999999999 6999999999999999999999999999999999999999998 8999999


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      +  ++||++++||+
T Consensus       259 ~--v~pDi~~~~K~  270 (423)
T PRK05964        259 G--VSPDIMCLSKG  270 (423)
T ss_pred             C--CCCCeeeeehh
Confidence            9  99999999996

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.89  E-value=2.1e-23  Score=174.79  Aligned_cols=82  Identities=26%  Similarity=0.336  Sum_probs=76.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.++++++++.      +++||+|+||+++++|+++|+++|++++|++|++||++||+|||+||| |+|. +|+++++| 
T Consensus       234 ~~l~~~l~~~~------~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGf-R~g~-~ga~~~~g-  304 (474)
T PLN02482        234 EAVKKLFEANK------GEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGF-RIAY-GGAQEYFG-  304 (474)
T ss_pred             HHHHHHHHhCC------CceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCe-ecCc-chHhHHhC-
Confidence            46777887652      799999999999999999999999999999999999999999999999 9998 89999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       305 -v~PDi~t~gK~  315 (474)
T PLN02482        305 -ITPDLTTLGKV  315 (474)
T ss_pred             -CCCCEEEecch
Confidence             99999999995

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.89  E-value=3.4e-23  Score=170.00  Aligned_cols=84  Identities=29%  Similarity=0.486  Sum_probs=76.1

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .+++++++.. ++   +++||+|+||+||++|+.+++++|+++++++|++||+++|+|||+|||||+|+ +|++++++  
T Consensus       185 ~l~~~~~~~~-~~---~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~-~~~~~~~~--  257 (421)
T PRK06777        185 SVERLFKADI-AP---DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGK-LFAMEYYD--  257 (421)
T ss_pred             HHHHHHHhcc-CC---CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCc-hhhhhhcC--
Confidence            4667776421 23   78999999999999999999999999999999999999999999999999998 89999998  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++||++|+||+
T Consensus       258 ~~pDiv~~sK~  268 (421)
T PRK06777        258 VKPDLITMAKS  268 (421)
T ss_pred             CCCCEEeeehh
Confidence            99999999996

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.89  E-value=5.2e-24  Score=177.15  Aligned_cols=100  Identities=22%  Similarity=0.228  Sum_probs=82.1

Q ss_pred             CcccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccc
Q psy1628           4 PVLTECIIGRYIILLAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEV   83 (114)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV   83 (114)
                      |++++=+.--++.+-=+-.+.++++|+++.      ++|||||+||++|+.|+++|.++|++.||++|++||+|||+|||
T Consensus       169 ~Gvp~~~a~~ti~~~yND~~al~~~~~~~g------~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEV  242 (432)
T COG0001         169 PGVPADVAKHTLVLPYNDLEALEEAFEEYG------DDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEV  242 (432)
T ss_pred             CCCChhhhccEEEecCCCHHHHHHHHHHcC------CcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecc
Confidence            444444444444443334467888998863      89999999999999999999999999999999999999999999


Q ss_pred             cccccccCccchhhhhcCCCCCcCEEEeec
Q psy1628          84 QVGFGRVGTHWWAFQLQGDDIIPDIVTVVW  113 (114)
Q Consensus        84 ~tGfgRtG~~~~~~~~~g~~v~PDivt~gK  113 (114)
                      +||| |... ..++++||  ++|||+|+||
T Consensus       243 iTGF-R~~~-gGaq~~~g--i~PDlttlGK  268 (432)
T COG0001         243 ITGF-RVAL-GGAQGYYG--VEPDLTTLGK  268 (432)
T ss_pred             hhhc-ccCC-cccccccC--cCcchhhhhh
Confidence            9999 5553 34677899  9999999999

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.89  E-value=3.8e-23  Score=170.36  Aligned_cols=82  Identities=27%  Similarity=0.411  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      .+++.++++   +   +++||||+||+ |++||+.+++++|+++++++|++||+++|+|||+|||||||+ +|++++++ 
T Consensus       196 ~l~~~l~~~---~---~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~-~~~~~~~~-  267 (427)
T TIGR00508       196 PLAKLMELH---S---DEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGK-LFACEHAG-  267 (427)
T ss_pred             HHHHHHHhc---C---CcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-cchhhhcC-
Confidence            456677654   2   68999999997 999999999999999999999999999999999999999998 89999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       268 -v~pDi~~~gK~  278 (427)
T TIGR00508       268 -VVPDILCVGKA  278 (427)
T ss_pred             -CCCCEEEechh
Confidence             99999999995

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.89  E-value=4.8e-23  Score=170.71  Aligned_cols=82  Identities=22%  Similarity=0.334  Sum_probs=76.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      +++||+|+||+++.+|.++|+++|+++++++|++||+++|+|||+||| |+|. +|++++++ 
T Consensus       189 ~~l~~~l~~~~------~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~-R~G~-~ga~~~~g-  259 (433)
T PRK00615        189 QIFQTVMNSLG------HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGF-RVAQ-GGAAAIYH-  259 (433)
T ss_pred             HHHHHHHHhcC------CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccc-cccH-hHHHHhcC-
Confidence            56788887653      689999999999999999999999999999999999999999999999 9998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       260 -v~PDi~~~gK~  270 (433)
T PRK00615        260 -VKPDITVYGKI  270 (433)
T ss_pred             -CCCCeEEEccc
Confidence             99999999996

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.89  E-value=6.7e-23  Score=168.27  Aligned_cols=85  Identities=29%  Similarity=0.389  Sum_probs=77.0

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.++++++++. ++   +++||+|+||+|+.+|+.++|++|+++++++|++||+++|+|||+|||||+|+ +|++++++ 
T Consensus       184 ~~l~~~~~~~~-~~---~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~-~~a~~~~~-  257 (421)
T PRK09792        184 DAIERLFKSDI-EA---KQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGK-LFAMDHYA-  257 (421)
T ss_pred             HHHHHHHHhcc-CC---CceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCc-hhHHHhcC-
Confidence            46777776531 23   78999999999999999999999999999999999999999999999999998 89999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       258 -~~pDi~t~gK~  268 (421)
T PRK09792        258 -DKPDLMTMAKS  268 (421)
T ss_pred             -CCCcEEEeehh
Confidence             99999999996

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=1e-22  Score=168.51  Aligned_cols=86  Identities=34%  Similarity=0.560  Sum_probs=76.4

Q ss_pred             HHHHHH-HHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628          22 HLFFER-IFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        22 ~~~~e~-~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      .+.+|+ +++++. ++   +++||+|+||++|++|+++|+++|+++++++|++||+++|+|||+|||||+|+ +|+++++
T Consensus       205 ~~~le~~~~~~~~-~~---~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~-~~a~~~~  279 (441)
T PRK05769        205 LDFIEDYLFKKLV-PP---EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGK-MFAIEHF  279 (441)
T ss_pred             HHHHHHHHHhhcc-CC---CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-eehhhcc
Confidence            345666 444321 23   79999999999999999999999999999999999999999999999999998 9999999


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      |  ++||++|+||+
T Consensus       280 g--v~pDivt~~K~  291 (441)
T PRK05769        280 G--VEPDIITLAKA  291 (441)
T ss_pred             C--CCCCEEEEccc
Confidence            9  99999999996

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.88  E-value=8.5e-23  Score=165.64  Aligned_cols=72  Identities=29%  Similarity=0.504  Sum_probs=69.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++|+|+||+++.+|+.+|+++|+++++++|++||+++|+|||+|||||+|+ +|++++++  ++||++|+||+
T Consensus       178 ~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~-~~a~~~~g--v~pDi~t~~K~  249 (397)
T TIGR03246       178 DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYG--VTPDILTSAKA  249 (397)
T ss_pred             cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCcccc-chhhhhcC--CCCCEEEeehh
Confidence            57999999999999999999999999999999999999999999999999998 89999999  99999999996

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.88  E-value=1.3e-22  Score=167.31  Aligned_cols=84  Identities=26%  Similarity=0.454  Sum_probs=75.4

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .++++++++. ++   +++||+|+||+++++|+.++|++|+++++++|++||+++|+|||+|||||+|+ +|++++++  
T Consensus       185 ~l~~~~~~~~-~~---~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~-~~a~~~~g--  257 (425)
T PRK07495        185 ALDKLFKADV-DP---QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGK-LFAMEHHE--  257 (425)
T ss_pred             HHHHHHHhcc-CC---CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCC-ceeecccC--
Confidence            3466665421 23   78999999999999999999999999999999999999999999999999998 89999999  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++||++|+||+
T Consensus       258 v~pDi~tlsK~  268 (425)
T PRK07495        258 VAADLTTMAKG  268 (425)
T ss_pred             CCCCEEeehhh
Confidence            99999999996

>PLN00144 acetylornithine transaminase

Probab=99.87  E-value=1.6e-22  Score=164.08  Aligned_cols=99  Identities=29%  Similarity=0.436  Sum_probs=85.7

Q ss_pred             cccccchhHHHHHHHHHH-----------------------HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCH
Q psy1628           5 VLTECIIGRYIILLAVVH-----------------------LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPA   61 (114)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-----------------------~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~   61 (114)
                      .+..|+||++...+++..                       +.+++.+.     .   +++||+|+||+|+.+|+.++++
T Consensus       116 ~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~---~~~aavi~eP~q~~gg~~~~~~  187 (382)
T PLN00144        116 SFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQ-----K---GKTAAVFVEPVQGEGGIYPATK  187 (382)
T ss_pred             EECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcC-----C---CCeEEEEEccccCCCCCccCCH
Confidence            467899999988877432                       22333332     1   6899999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          62 NYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        62 ~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +|+++++++|++||+++|+|||+|||||+|+ +|++++++  +.||++|+||+
T Consensus       188 ~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~-~~~~~~~~--~~PDi~t~sK~  237 (382)
T PLN00144        188 EFLQGLRALCDEAGALLVFDEVQCGLGRTGY-LWAHEAYG--VEPDIMTLAKP  237 (382)
T ss_pred             HHHHHHHHHHHHcCCEEEEechhhCCCccch-HhhhhhcC--CCCCEEEeccc
Confidence            9999999999999999999999999999998 89999999  99999999996

>PLN02624 ornithine-delta-aminotransferase

Probab=99.87  E-value=3.5e-22  Score=166.60  Aligned_cols=100  Identities=28%  Similarity=0.440  Sum_probs=88.4

Q ss_pred             ccccchhHHHHHHHHH-----------------------HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHH
Q psy1628           6 LTECIIGRYIILLAVV-----------------------HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPAN   62 (114)
Q Consensus         6 ~~~~~~~~~~~~~~~~-----------------------~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~   62 (114)
                      +..|+||++...+++.                       .+.+++.++++   +   +++||+|+||+++.+|.+.|+++
T Consensus       172 ~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~---~---~~iaaiiiEpv~~~~G~v~p~~~  245 (474)
T PLN02624        172 CCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEED---G---DRIAAFLFEPIQGEAGVVIPPDG  245 (474)
T ss_pred             ECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhC---C---CCEEEEEECCccCCCCCcCCCHH
Confidence            4568888887776632                       25678888764   2   78999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          63 YLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        63 fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      |+++++++|++||+++|+|||+|||||+|+ +|++++++  ++||++++||+
T Consensus       246 ~L~~l~~lc~~~gillI~DEv~tG~GrtG~-~~a~~~~~--i~pDiv~lsK~  294 (474)
T PLN02624        246 YLKAVRELCSKHNVLMIADEIQTGLARTGK-MLACDWEE--VRPDVVILGKA  294 (474)
T ss_pred             HHHHHHHHHHHcCCEEEEeccccCcCcCcc-hhhHHhcC--CCCCEEEeccc
Confidence            999999999999999999999999999998 89988888  99999999996

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.87  E-value=6.1e-22  Score=163.67  Aligned_cols=72  Identities=33%  Similarity=0.565  Sum_probs=70.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++||+|+||+||++|+.+|+++|+++|+++|++||+++|+|||+|||||+|. +|++++++  ++||++++||+
T Consensus       218 ~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~-~~a~~~~~--v~pDi~t~sK~  289 (451)
T PRK06918        218 ETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGK-YFAIEHFD--VVPDLITVSKS  289 (451)
T ss_pred             CceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCc-eehhHhcC--CCCCEEeeehh
Confidence            79999999999999999999999999999999999999999999999999998 89999998  99999999996

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.86  E-value=7.1e-22  Score=160.65  Aligned_cols=72  Identities=29%  Similarity=0.501  Sum_probs=69.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++|+|+||+++.+|+++|+++|+++++++|++||+++|+|||+|||||+|+ +|++++++  +.||++++||+
T Consensus       182 ~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~-~~~~~~~~--v~pDi~t~sK~  253 (406)
T PRK12381        182 DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGE-LYAYMHYG--VTPDVLTTAKA  253 (406)
T ss_pred             CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcc-hhhhHhhC--CCCCEEEehhh
Confidence            58999999999999999999999999999999999999999999999999998 88989999  99999999996

>KOG1405|consensus

Probab=99.85  E-value=2e-21  Score=159.66  Aligned_cols=88  Identities=26%  Similarity=0.359  Sum_probs=79.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      ..+|.++.+++...   ..+||+|+||+|++||-.+.+++|+++||++|++||+.+|+||||||-|-||+ +|++++|++
T Consensus       256 ~~Ve~li~~~~~k~---~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk-~WaHehw~l  331 (484)
T KOG1405|consen  256 AEVEDLIVKYRKKK---KPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGK-FWAHEHWNL  331 (484)
T ss_pred             HHHHHHHHHHhhcC---CCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCc-eeeehhcCC
Confidence            35677777764222   58999999999999999999999999999999999999999999999999998 999999997


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                      +-.||++|++|.
T Consensus       332 ~~PpD~vTFSKK  343 (484)
T KOG1405|consen  332 DSPPDVVTFSKK  343 (484)
T ss_pred             CCCccceehhhh
Confidence            778999999994

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=5.4e-21  Score=158.50  Aligned_cols=85  Identities=35%  Similarity=0.627  Sum_probs=76.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +++++.+++.. .+   +++||+|+||+|+.+|+.+++++|+++++++|++||+++|+|||+|||||+|+ +|++++++ 
T Consensus       190 ~~~~~~l~~~~-~~---~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~-~~a~~~~~-  263 (443)
T PRK08360        190 EYIKEKFEGEV-YA---EGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGK-WFAIEHFG-  263 (443)
T ss_pred             HHHHHHHHhcc-CC---CCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-chhhhhcC-
Confidence            35777776532 23   79999999999999999999999999999999999999999999999999998 88989888 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       264 -~~pDiitlsK~  274 (443)
T PRK08360        264 -VEPDIITLGKP  274 (443)
T ss_pred             -CCCCEEEeccc
Confidence             99999999996

>PRK07046 aminotransferase; Validated

Probab=99.84  E-value=3.6e-21  Score=160.17  Aligned_cols=70  Identities=21%  Similarity=0.242  Sum_probs=63.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++||+|+||+|+++|+++|+++|++++|++|++||+|||+|||+| | |+|. ...++++|  ++|||+|+||+
T Consensus       217 ~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~t-f-r~g~-Gg~~~~~g--v~PDi~t~gK~  286 (453)
T PRK07046        217 GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHT-I-SSGP-GGYTRAHG--LEPDFLVVGKP  286 (453)
T ss_pred             CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-C-ccCC-cchhHHhC--CCccceeehhh
Confidence            6899999999999999999999999999999999999999999999 6 4665 33456788  99999999995

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.84  E-value=6.6e-21  Score=156.45  Aligned_cols=100  Identities=25%  Similarity=0.336  Sum_probs=85.1

Q ss_pred             CcccccchhHHHHHHHHHHH-----------------------HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCC
Q psy1628           4 PVLTECIIGRYIILLAVVHL-----------------------FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPP   60 (114)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~-----------------------~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~   60 (114)
                      -.+..++||+++..+++...                       .+++.++     +   +++||+|+||++++||+++++
T Consensus       135 i~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~---~~~aavi~eP~~~~gg~~~~~  206 (408)
T PRK04612        135 VTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA-----G---GDVAAVMLEPIQGEGGVMPAA  206 (408)
T ss_pred             EEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC-----C---CCEEEEEECCccCCCCCcCCC
Confidence            34667899999887765321                       1233331     2   689999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          61 ANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        61 ~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++|+++++++|++||+++|+|||+|||||+|. +|++++++  ++||++|+||+
T Consensus       207 ~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~-~~a~~~~~--~~pdi~t~~K~  257 (408)
T PRK04612        207 PGFLARVRALCDQHDALLVLDEIQCGMGRTGT-LFAHWQEQ--VTPDIVTLAKA  257 (408)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-hhhhhhcC--CCCCEEEEcch
Confidence            99999999999999999999999999999998 89988888  99999999996

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.83  E-value=1.6e-20  Score=151.71  Aligned_cols=100  Identities=25%  Similarity=0.398  Sum_probs=86.5

Q ss_pred             ccccchhHHHHHHHHH-----------------------HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHH
Q psy1628           6 LTECIIGRYIILLAVV-----------------------HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPAN   62 (114)
Q Consensus         6 ~~~~~~~~~~~~~~~~-----------------------~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~   62 (114)
                      ...|+||+++..++..                       -+.+|++++++.      ++++++++||+++.+|...++++
T Consensus       134 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~------~~~~avi~E~v~~~~G~~~~~~~  207 (401)
T TIGR01885       134 AKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHG------PNVCAFIVEPIQGEAGVVVPDDG  207 (401)
T ss_pred             ECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcC------CCEEEEEEeCccCCCCCccCCHH
Confidence            4557788877765542                       256778887642      68999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          63 YLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        63 fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      |+++++++|++||+++|+|||+|||||+|+ +|++++++  +.||++|+||+
T Consensus       208 ~l~~l~~l~~~~~~lli~DEv~~g~g~~G~-~~~~~~~~--~~~di~~~gK~  256 (401)
T TIGR01885       208 YLKKVRELCTKHNVLLIADEIQTGLGRTGK-LLCVDHEN--VKPDIVLLGKA  256 (401)
T ss_pred             HHHHHHHHHHHcCCEEEEechhhCCCccch-hhHHhhcC--CCCCEEEeecc
Confidence            999999999999999999999999999998 88888888  99999999996

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.81  E-value=4.2e-20  Score=151.63  Aligned_cols=82  Identities=24%  Similarity=0.270  Sum_probs=74.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++   +   ++++++|+||++|++|.++++++|+++++++|++||+++|+|||+||| |+|. +|++++++ 
T Consensus       185 ~~l~~~i~~~---~---~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~-r~g~-~~~~~~~~-  255 (426)
T PRK00062        185 EAVEELFEEY---G---DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGF-RVAL-GGAQGYYG-  255 (426)
T ss_pred             HHHHHHHHhC---C---CcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhcc-ccCC-ccHHHHhC-
Confidence            4567777654   2   799999999999999999999999999999999999999999999999 9997 88888899 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++++||+
T Consensus       256 -~~pDi~~~gK~  266 (426)
T PRK00062        256 -VTPDLTTLGKI  266 (426)
T ss_pred             -CCcchHhhhhH
Confidence             99999999995

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.80  E-value=7.4e-20  Score=148.71  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=74.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      ++++|+|+||+++++|.++++++|+++++++|++||+++|+|||+||| |+|. +|++++++ 
T Consensus       183 ~~l~~~i~~~~------~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-r~g~-~~~~~~~~-  253 (423)
T TIGR00713       183 EALEEVFEEYG------EEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGF-RVAL-GGAQEYFG-  253 (423)
T ss_pred             HHHHHHHHHcC------CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccccc-ccCc-chhHHHhC-
Confidence            46777777642      689999999999999999999999999999999999999999999999 9997 88888898 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++|+||+
T Consensus       254 -~~pDi~t~sK~  264 (423)
T TIGR00713       254 -VEPDLTTLGKI  264 (423)
T ss_pred             -CCcchhhhhhh
Confidence             99999999995

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>KOG1403|consensus

Probab=99.78  E-value=2.5e-20  Score=151.26  Aligned_cols=109  Identities=50%  Similarity=0.743  Sum_probs=92.6

Q ss_pred             CCCCcccccchhHHHHH-------HHHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH
Q psy1628           1 VHVPVLTECIIGRYIIL-------LAVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA   73 (114)
Q Consensus         1 ~~~~~~~~~~~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~   73 (114)
                      |||+--+.-+-|.+--.       =+.|.+.+++++++.....   ..+||+|.|..|+-||-+.||++|++.+.+..|.
T Consensus       165 VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g---~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~  241 (452)
T KOG1403|consen  165 VHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKG---QGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRS  241 (452)
T ss_pred             eEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcC---CcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhc
Confidence            45555555555543222       2578889999998764233   7899999999999999999999999999999999


Q ss_pred             hCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          74 AGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        74 ~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +|.++|+||||+||||.|+++|+||.|+  +.|||+||||.
T Consensus       242 aGGv~IaDEVQvGFGRvG~hyWafq~y~--fiPDIVtmgKp  280 (452)
T KOG1403|consen  242 AGGVCIADEVQVGFGRVGSHYWAFQTYN--FIPDIVTMGKP  280 (452)
T ss_pred             CCCeEEeehhhhcccccchhhhhhhhhc--cccchheeccc
Confidence            9999999999999999999999999999  99999999995

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.78  E-value=3.1e-19  Score=143.47  Aligned_cols=72  Identities=39%  Similarity=0.653  Sum_probs=69.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++.+|..+|+++|+++++++|++||+++|+||++|||||+|+ +|++++++  +.||++|+||+
T Consensus       182 ~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~--~~pDi~t~sK~  253 (398)
T PRK03244        182 DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGA-WFAHQHDG--VTPDVVTLAKG  253 (398)
T ss_pred             CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccch-HHhhhhhC--CCCCEEEEchh
Confidence            58999999999999999999999999999999999999999999999999998 88888888  99999999995

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.78  E-value=8.9e-19  Score=141.84  Aligned_cols=72  Identities=31%  Similarity=0.514  Sum_probs=68.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++.+|+.+++++|+++++++|++||+++|+|||++||||+|+ ++++++++  +.||+.++||+
T Consensus       183 ~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~--~~pdi~s~sK~  254 (403)
T PRK05093        183 DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGD-LFAYMHYG--VTPDILTSAKA  254 (403)
T ss_pred             CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCcc-chhhhhcC--CCCCEEEeccc
Confidence            57999999999999999999999999999999999999999999999999998 78888888  99999999996

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.77  E-value=1.1e-18  Score=144.01  Aligned_cols=78  Identities=24%  Similarity=0.304  Sum_probs=67.0

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++   +   +++||+|+||++|.    .++++|+++++++|++||++||+|||+|||++++  +++.++++ 
T Consensus       175 ~~l~~~l~~~---~---~~~aavi~Epv~g~----~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~--~g~~~~~g-  241 (431)
T PRK06209        175 ASLEALFEDH---P---GRIACVILEPATAD----EPQDGFLHEVRRLCHENGALFILDEMITGFRWHM--RGAQKLYG-  241 (431)
T ss_pred             HHHHHHHHhC---C---CCEEEEEEccccCC----CCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCc--chhhHHhC-
Confidence            4577778764   2   79999999999975    8899999999999999999999999999998765  33444688 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++|+||+
T Consensus       242 -v~PDi~t~gK~  252 (431)
T PRK06209        242 -IVPDLSCFGKA  252 (431)
T ss_pred             -CCcceeeehhh
Confidence             99999999996

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.77  E-value=1.1e-18  Score=139.05  Aligned_cols=72  Identities=38%  Similarity=0.536  Sum_probs=68.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++.+|+.+++++|+++++++|++||+++|+|||++||||+|+ ++++++++  +.||++|+||+
T Consensus       166 ~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~~~~~~~--~~~di~t~sK~  237 (377)
T PRK02936        166 EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGT-LFAYEQFG--LDPDIVTVAKG  237 (377)
T ss_pred             CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhhC--CCCcEEEEccc
Confidence            57999999999999999999999999999999999999999999999999998 88888888  99999999996

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.77  E-value=8.9e-19  Score=141.54  Aligned_cols=72  Identities=28%  Similarity=0.510  Sum_probs=68.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++.+|...++++|+++++++|++||+++|+||+++||||+|+ +|+++.++  +.||++++||+
T Consensus       185 ~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~--~~pdi~~~sK~  256 (396)
T PRK04073        185 PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGK-LFACDWDN--VTPDMYILGKA  256 (396)
T ss_pred             cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcH-HHHhhhcC--CCCCEEEeccc
Confidence            57899999999999999999999999999999999999999999999999998 88888888  99999999995

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.77  E-value=1.2e-18  Score=139.90  Aligned_cols=72  Identities=31%  Similarity=0.515  Sum_probs=68.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .+++|+++||+++.+|+.+++++|+++|+++|++||+++|+|||++||||+|+ +|++++++  +.||++++||+
T Consensus       174 ~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~  245 (389)
T PRK01278        174 PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGK-LFAHEWAG--VTPDIMAVAKG  245 (389)
T ss_pred             CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCc-ceeecccC--CCCCEEEEehh
Confidence            48999999999999999999999999999999999999999999999999998 88888888  99999999996

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.76  E-value=2.5e-18  Score=140.82  Aligned_cols=84  Identities=30%  Similarity=0.438  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .+++++++.. ++   +++||+|+||+++++|.++++++|+++++++|++||+++|.||+++||||+|. ++++++++  
T Consensus       186 ~l~~~l~~~~-~~---~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~-~~~~~~~~--  258 (425)
T PRK08088        186 SIERIFKNDA-AP---EDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGT-LFAMEQMG--  258 (425)
T ss_pred             HHHHHHHhcc-CC---CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhHHhhcC--
Confidence            4677775321 23   79999999999999999999999999999999999999999999999999998 88888888  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      +.||+.++||+
T Consensus       259 ~~pdi~s~sK~  269 (425)
T PRK08088        259 VAADLTTFAKS  269 (425)
T ss_pred             CCCCEEEEecc
Confidence            99999999996

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.74  E-value=6.6e-18  Score=135.86  Aligned_cols=72  Identities=33%  Similarity=0.495  Sum_probs=68.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++|+++||+++.+|.+.++++|+++++++|++||+++|+||++|||||+|. +|+.++++  +.||++++||+
T Consensus       186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~-~~~~~~~g--~~~D~~~~~K~  257 (401)
T PRK00854        186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGK-LLAEEHEG--IEADVTLIGKA  257 (401)
T ss_pred             CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCch-HhHHhhcC--CCCCEEEeccc
Confidence            47899999999999999999999999999999999999999999999999998 78888888  99999999995

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.73  E-value=9.4e-18  Score=134.51  Aligned_cols=72  Identities=33%  Similarity=0.568  Sum_probs=68.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++.+|+..++++|+++++++|++||+++|+|||++||||+|+ +|+.+.++  +.||++++||+
T Consensus       177 ~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~-~~~~~~~~--~~pd~~~~sK~  248 (400)
T PTZ00125        177 PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK-LLAHDHEG--VKPDIVLLGKA  248 (400)
T ss_pred             CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhHHHhcC--CCCCEEEEccc
Confidence            58999999999999999999999999999999999999999999999999998 88888888  99999999996

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.71  E-value=2.6e-17  Score=131.76  Aligned_cols=72  Identities=29%  Similarity=0.477  Sum_probs=68.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++++|+++++++|+++++++|+++|+++|+||+++||||+|. +|.++.++  +.||++|+||+
T Consensus       164 ~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~  235 (375)
T PRK04260        164 KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGK-LYAFEHYG--IEPDIFTLAKG  235 (375)
T ss_pred             CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhHhhC--CCCCEEEeccc
Confidence            57899999999999999999999999999999999999999999999999998 88888888  99999999996

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.68  E-value=1.7e-16  Score=126.86  Aligned_cols=83  Identities=39%  Similarity=0.602  Sum_probs=74.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++   +   ++++++++||+++.+|...++++|+++++++|++||+++|+||+++||||+|. ++++++++ 
T Consensus       179 ~~l~~~l~~~---~---~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~-~~~~~~~~-  250 (413)
T cd00610         179 EALEEALEEH---P---EEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGK-MFAFEHFG-  250 (413)
T ss_pred             HHHHHHHhcC---C---CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcc-hhhHhhcC-
Confidence            3556666554   2   68999999999999999999999999999999999999999999999999998 77888888 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++++||+
T Consensus       251 -~~~d~~t~sK~  261 (413)
T cd00610         251 -VEPDIVTLGKG  261 (413)
T ss_pred             -CCCCeEEEccc
Confidence             99999999995

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.68  E-value=1e-16  Score=127.97  Aligned_cols=72  Identities=33%  Similarity=0.483  Sum_probs=68.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||.++.+|+.+++++|+++++++|++||+++|+||+++||||+|+ +++++.++  +.||++++||+
T Consensus       181 ~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~  252 (396)
T PRK02627        181 DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGK-LFAYQHYG--IEPDIMTLAKG  252 (396)
T ss_pred             CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCc-eeeehhcC--CCCCEEEEcch
Confidence            58999999999999999999999999999999999999999999999999997 88888888  99999999996

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.37  E-value=2.5e-12  Score=101.99  Aligned_cols=72  Identities=31%  Similarity=0.513  Sum_probs=65.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++.++++||.++.+|..+++.+++++++++|+++|+++|.||+++||+++|. .+.++.++  +.||++++||+
T Consensus       169 ~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~-~~~~~~~~--~~~d~~t~sK~  240 (379)
T TIGR00707       169 DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGK-FFAYEHYG--IEPDIITLAKG  240 (379)
T ss_pred             hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hhhHHhcC--CCCCEEEEccc
Confidence            46789999999988898889999999999999999999999999999999997 66667778  99999999995

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK07505 hypothetical protein; Provisional

Probab=99.13  E-value=1.4e-10  Score=93.81  Aligned_cols=67  Identities=15%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc--ccccccCccchhhhhcCCCC-CcCEE----Eee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ--VGFGRVGTHWWAFQLQGDDI-IPDIV----TVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~--tGfgRtG~~~~~~~~~g~~v-~PDiv----t~g  112 (114)
                      +..++++.||.++.|++.+     +++++++|++||+++|+||++  +||||+|. +++.++++  + .||.+    ++|
T Consensus       179 ~~~~~vl~~p~~~~G~~~~-----~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~-~~~~~~~~--~~~~d~~i~~~s~s  250 (402)
T PRK07505        179 NKTVAYVADGVYSMGGIAP-----VKELLRLQEKYGLFLYIDDAHGLSIYGKNGE-GYVRSELD--YRLNERTIIAASLG  250 (402)
T ss_pred             CCCEEEEEecccccCCcCC-----HHHHHHHHHHcCCEEEEECcccccCcCCCCC-chHHHHcC--CCCCCCeEEEEech
Confidence            4579999999998876555     799999999999999999997  78999998 77788888  7 78865    688


Q ss_pred             cC
Q psy1628         113 WN  114 (114)
Q Consensus       113 K~  114 (114)
                      |+
T Consensus       251 K~  252 (402)
T PRK07505        251 KA  252 (402)
T ss_pred             hh
Confidence            84

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.11  E-value=2e-10  Score=93.72  Aligned_cols=66  Identities=23%  Similarity=0.293  Sum_probs=57.1

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc--cccccCccchhhhhcCCCCCc----CEEEeecC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV--GFGRVGTHWWAFQLQGDDIIP----DIVTVVWN  114 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t--GfgRtG~~~~~~~~~g~~v~P----Divt~gK~  114 (114)
                      +...+++||+++.+|.+++    +++++++|++||+++|+||+++  ++|++|+  |+++++|  ++|    |++++|++
T Consensus       138 ~t~~vi~E~v~~~~G~i~~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~--g~~~~~g--~~p~~~~Div~~sls  209 (392)
T PLN03227        138 QRRFLVVEGLYKNTGTLAP----LKELVALKEEFHYRLILDESFSFGTLGKSGR--GSLEHAG--LKPMVHAEIVTFSLE  209 (392)
T ss_pred             CcEEEEEcCCcCCCCcccC----HHHHHHHHHHcCCEEEEECcccccccCCCCC--cHHHHcC--CCCCCCceEEEeech
Confidence            5678999999998887777    8899999999999999999998  4566775  6789999  999    99998853

>PLN02822 serine palmitoyltransferase

Probab=99.05  E-value=5.1e-10  Score=93.96  Aligned_cols=64  Identities=23%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc--cccccCccchhhhhcCCCC---CcCEEE--eecC
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV--GFGRVGTHWWAFQLQGDDI---IPDIVT--VVWN  114 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t--GfgRtG~~~~~~~~~g~~v---~PDivt--~gK~  114 (114)
                      +++++|++.+..|.+.+    +++++++|++||+++|+||+++  .+|++|+  +..++++  +   .||+++  |||+
T Consensus       247 ~~Ivve~i~~~~G~i~~----L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~--G~~e~~~--v~~~~~dii~~s~sKa  317 (481)
T PLN02822        247 RYIVVEAIYQNSGQIAP----LDEIVRLKEKYRFRVLLDESNSFGVLGKSGR--GLSEHFG--VPIEKIDIITAAMGHA  317 (481)
T ss_pred             EEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC--ChHHHcC--CCCCCCeEEEecchhh
Confidence            89999999998887777    7999999999999999999999  5688887  3678888  7   799999  6685

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.00  E-value=1.8e-09  Score=87.20  Aligned_cols=79  Identities=27%  Similarity=0.354  Sum_probs=62.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~  100 (114)
                      +.++++++..  .+   +++.++++|++.+..|...+    +++++++|++||+++|+||+++ | ||++|. .+ .++.
T Consensus       165 ~~le~~l~~~--~~---~~~~~v~~~~v~s~~G~~~~----l~~i~~l~~~~~~~livDEa~~~G~~g~~g~-g~-~~~~  233 (407)
T PRK09064        165 AHLEELLAAA--DP---DRPKLIAFESVYSMDGDIAP----IAEICDLADKYNALTYLDEVHAVGMYGPRGG-GI-AERD  233 (407)
T ss_pred             HHHHHHHHhc--cC---CCCeEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEECCCcccccCCCCC-Ch-HHhc
Confidence            3567777643  12   46889999999988787665    9999999999999999999998 7 589987 44 4556


Q ss_pred             CCCC--CcCEE--EeecC
Q psy1628         101 GDDI--IPDIV--TVVWN  114 (114)
Q Consensus       101 g~~v--~PDiv--t~gK~  114 (114)
                      +  +  .||++  |+||+
T Consensus       234 ~--~~~~~div~~t~sKa  249 (407)
T PRK09064        234 G--LMDRIDIIEGTLAKA  249 (407)
T ss_pred             C--CCCCCeEEEEecchh
Confidence            6  4  57998  89995

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=98.90  E-value=6.7e-09  Score=84.23  Aligned_cols=78  Identities=27%  Similarity=0.352  Sum_probs=61.8

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhcC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQG  101 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~g  101 (114)
                      .+++.+++..  +   ++++++++|++++..|...+    +++++++|+++|+++|+||+++ |+ |++|. .+ .++.+
T Consensus       165 ~l~~~l~~~~--~---~~~~~v~~~~v~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~G~-g~-~~~~~  233 (406)
T PRK13393        165 DLERKLSDLD--P---HRPKLVAFESVYSMDGDIAP----IAEICDVAEKHGAMTYLDEVHAVGLYGPRGG-GI-AEREG  233 (406)
T ss_pred             HHHHHHHhcc--C---CCCEEEEEcCCCCCCCchhC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-ch-hhhcC
Confidence            4566665431  2   46789999999998887776    8999999999999999999998 88 89987 44 36666


Q ss_pred             CCCC--cCEE--EeecC
Q psy1628         102 DDII--PDIV--TVVWN  114 (114)
Q Consensus       102 ~~v~--PDiv--t~gK~  114 (114)
                        +.  ||++  ++||+
T Consensus       234 --~~~~~~i~~~tlsKa  248 (406)
T PRK13393        234 --LADRLTIIEGTLAKA  248 (406)
T ss_pred             --CCCCCeEEEEeCchh
Confidence              54  6887  88885

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=98.80  E-value=2.1e-08  Score=81.03  Aligned_cols=78  Identities=28%  Similarity=0.404  Sum_probs=59.7

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhcC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQG  101 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~g  101 (114)
                      .++++++...  +   +++.++++|++.+..|.+.+    +++++++|++||+++|+||+++ |+ |++|. .. .++.+
T Consensus       165 ~l~~~l~~~~--~---~~~~~v~~e~~~~~~G~~~~----l~~i~~l~~~~~~~livDea~~~G~~g~~g~-g~-~~~~~  233 (402)
T TIGR01821       165 HLEKLLQSVD--P---NRPKIIAFESVYSMDGDIAP----IEEICDLADKYGALTYLDEVHAVGLYGPRGG-GI-AERDG  233 (402)
T ss_pred             HHHHHHHhcc--C---CCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEeCcccccccCCCCC-cc-chhcc
Confidence            5677776531  2   46789999999988887765    8999999999999999999999 53 66665 22 35555


Q ss_pred             CCC--CcCEE--EeecC
Q psy1628         102 DDI--IPDIV--TVVWN  114 (114)
Q Consensus       102 ~~v--~PDiv--t~gK~  114 (114)
                        +  .||++  |+||+
T Consensus       234 --~~~~~div~~t~sKa  248 (402)
T TIGR01821       234 --LMHRIDIIEGTLAKA  248 (402)
T ss_pred             --CCCCCeEEEEechhh
Confidence              4  57888  88885

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PLN02955 8-amino-7-oxononanoate synthase

Probab=98.64  E-value=1.1e-07  Score=80.73  Aligned_cols=77  Identities=19%  Similarity=0.220  Sum_probs=61.9

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc--cccCccchhhhhcC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF--GRVGTHWWAFQLQG  101 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf--gRtG~~~~~~~~~g  101 (114)
                      .++++++++.      ++.+.+++|++-+..|.+.|    +++++++|++||+++|+||..+.+  |.+|.  ...+++|
T Consensus       238 ~Le~~L~~~~------~~~~~Vv~EgV~SmdGdiap----L~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~--G~~e~~g  305 (476)
T PLN02955        238 HLNSLLSSCK------MKRKVVVTDSLFSMDGDFAP----MEELSQLRKKYGFLLVIDDAHGTFVCGENGG--GVAEEFN  305 (476)
T ss_pred             HHHHHHHhCC------CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCcEEEEcccccCceecCCCC--cHHHHhC
Confidence            5677777653      45688999999887777666    999999999999999999999844  66665  4567888


Q ss_pred             CCCCcCE----EEeecC
Q psy1628         102 DDIIPDI----VTVVWN  114 (114)
Q Consensus       102 ~~v~PDi----vt~gK~  114 (114)
                        +.||+    .|+||+
T Consensus       306 --~~~di~ii~~TLsKA  320 (476)
T PLN02955        306 --CEADVDLCVGTLSKA  320 (476)
T ss_pred             --CCCCCcEEEEeCccc
Confidence              88888    788885

>PRK07179 hypothetical protein; Provisional

Probab=98.59  E-value=2.3e-07  Score=75.19  Aligned_cols=65  Identities=25%  Similarity=0.286  Sum_probs=50.5

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc--ccccCccchhhhhcCCCCC--cCEEEe--ec
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG--FGRVGTHWWAFQLQGDDII--PDIVTV--VW  113 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG--fgRtG~~~~~~~~~g~~v~--PDivt~--gK  113 (114)
                      +.+++++|++.+..|.+.+    +++++++|++||+++|+||+++.  +|++|. .+ .+.++  +.  +|+++.  +|
T Consensus       181 ~~~lV~v~~v~n~tG~i~p----l~~I~~l~~~~~~~livDea~~~g~~g~~g~-g~-~~~~~--~~~~vdi~~~S~sK  251 (407)
T PRK07179        181 GPGIIVVDSVYSTTGTIAP----LADIVDIAEEFGCVLVVDESHSLGTHGPQGA-GL-VAELG--LTSRVHFITASLAK  251 (407)
T ss_pred             CCeEEEECCCCCCCCcccc----HHHHHHHHHHcCCEEEEECcccccCcCCCCC-ch-HHhcC--CCCCCCEEEeechH
Confidence            4678999999988887777    78999999999999999999984  355665 22 44566  64  488764  56

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=98.49  E-value=6e-07  Score=72.15  Aligned_cols=83  Identities=20%  Similarity=0.267  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~  100 (114)
                      +.+++.+++....+   .+...++++++.+..|.+.|    ++++.++|+++|+++++||+|+ | ++++|. .+.. .+
T Consensus       128 ~~l~~~l~~~~~~~---~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~~g~~g~-g~~~-~~  198 (370)
T PRK05937        128 DHLESLLESCRQRS---FGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGIFGDDGK-GFCH-SL  198 (370)
T ss_pred             HHHHHHHHhhhccC---CCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-chHH-hh
Confidence            35667776431111   23456889999888887776    8899999999999999999998 5 577775 3222 22


Q ss_pred             C-CCCCcCEEEeecC
Q psy1628         101 G-DDIIPDIVTVVWN  114 (114)
Q Consensus       101 g-~~v~PDivt~gK~  114 (114)
                      + .++.+|+.++||.
T Consensus       199 ~~~~~~~~~~tlsK~  213 (370)
T PRK05937        199 GYENFYAVLVTYSKA  213 (370)
T ss_pred             CCCCCcEEEEechhh
Confidence            3 0134688999984

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=98.41  E-value=1.3e-06  Score=70.78  Aligned_cols=80  Identities=24%  Similarity=0.245  Sum_probs=58.1

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhcC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQG  101 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~g  101 (114)
                      .+++.+++..  .   ++..++++|+..+..|.+.+    +++++++|++||+++|+||+++ |+ |+.|. .+ .+..+
T Consensus       166 ~l~~~l~~~~--~---~~t~~v~i~~~~n~tG~~~~----l~~i~~l~~~~~~~livDea~~~g~~g~~g~-g~-~~~~~  234 (410)
T PRK13392        166 DLEEQLASVD--P---DRPKLIAFESVYSMDGDIAP----IEAICDLADRYNALTYVDEVHAVGLYGARGG-GI-AERDG  234 (410)
T ss_pred             HHHHHHHhcc--C---CCCEEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCccccCcCCCCC-ch-hhhcc
Confidence            3455555431  2   47789999999887787665    8999999999999999999999 65 67775 33 34444


Q ss_pred             CCCCcCEE--EeecC
Q psy1628         102 DDIIPDIV--TVVWN  114 (114)
Q Consensus       102 ~~v~PDiv--t~gK~  114 (114)
                      ..-.+|++  +++|+
T Consensus       235 ~~~~~div~~tlsK~  249 (410)
T PRK13392        235 LMDRIDMIQGTLAKA  249 (410)
T ss_pred             CCCCCcEEEEEChHh
Confidence            11257887  88884

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=98.37  E-value=1.9e-06  Score=67.93  Aligned_cols=80  Identities=23%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~  100 (114)
                      +.+++.+++..      ++.+.+++++++...|...    .++++.++|++||+++|+||+++ | ++++|. .+ ....
T Consensus       156 ~~l~~~i~~~~------~~~~lvi~~~~~~~~G~~~----~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~-~~-~~~~  223 (385)
T PRK05958        156 DALEALLAKWR------AGRALIVTESVFSMDGDLA----PLAELVALARRHGAWLLVDEAHGTGVLGPQGR-GL-AAEA  223 (385)
T ss_pred             HHHHHHHHhcc------CCCeEEEEEecccCCCCcC----CHHHHHHHHHHhCCEEEEECcccccccCCCCC-ch-HHhh
Confidence            45666665531      3578899998887666433    38999999999999999999995 4 355665 22 2222


Q ss_pred             CCCCCcC---EEEeecC
Q psy1628         101 GDDIIPD---IVTVVWN  114 (114)
Q Consensus       101 g~~v~PD---ivt~gK~  114 (114)
                      +.+..||   +.+++|+
T Consensus       224 ~~~~~~~~i~~~s~sK~  240 (385)
T PRK05958        224 GLAGEPDVILVGTLGKA  240 (385)
T ss_pred             CCCCCCceEEEEechhh
Confidence            3224677   5666774

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=98.32  E-value=3.1e-06  Score=67.30  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=54.9

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc--ccccCccchhhhhcC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG--FGRVGTHWWAFQLQG  101 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG--fgRtG~~~~~~~~~g  101 (114)
                      .+++.+.+..  .   .+.++++++++++..|...+    ++++.++|++||+++|+||+++.  ++++|.  ....+++
T Consensus       151 ~l~~~l~~~~--~---~~~~~v~~~~v~~~tG~~~~----~~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~  219 (385)
T TIGR01825       151 DLDRVLRENP--S---YGKKLIVTDGVFSMDGDVAP----LPEIVELAERYGAVTYVDDAHGSGVMGEAGR--GTVHHFG  219 (385)
T ss_pred             HHHHHHHhhc--c---CCCeEEEEecCCcCCCCccC----HHHHHHHHHHhCCEEEEECcccccCcCCCCC--ccHhhcC
Confidence            3566665531  1   46889999998887776544    68999999999999999999963  455554  2344555


Q ss_pred             CCCCcC----EEEeecC
Q psy1628         102 DDIIPD----IVTVVWN  114 (114)
Q Consensus       102 ~~v~PD----ivt~gK~  114 (114)
                        +.||    +.+++|+
T Consensus       220 --~~~~~~i~~~s~sK~  234 (385)
T TIGR01825       220 --LEDKVDIQVGTLSKA  234 (385)
T ss_pred             --CCcCCcEEEEeccHH
Confidence              5555    4677774

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=98.00  E-value=2.4e-05  Score=53.96  Aligned_cols=64  Identities=17%  Similarity=0.186  Sum_probs=50.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+++++++++.....|...+.    +++.++|+++|+++|+||.+.++..... +  .....  ..+|+++.|
T Consensus        91 ~~~~~v~~~~~~~~~g~~~~~----~~l~~~~~~~~~~li~D~a~~~~~~~~~-~--~~~~~--~~~d~~~~s  154 (170)
T cd01494          91 PNVALIVITPNTTSGGVLVPL----KEIRKIAKEYGILLLVDAASAGGASPAP-G--VLIPE--GGADVVTFS  154 (170)
T ss_pred             CceEEEEEecCcCCCCeEcCH----HHHHHHHHHcCCEEEEeccccccccccc-c--ccccc--ccCCEEEEE
Confidence            689999999988877765543    8999999999999999999998866553 2  12222  568999988

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=97.88  E-value=5.9e-05  Score=59.84  Aligned_cols=67  Identities=19%  Similarity=0.242  Sum_probs=48.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhcCCCC--CcCEE--Eeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQGDDI--IPDIV--TVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~g~~v--~PDiv--t~gK  113 (114)
                      .++.+++.+++++..|.    ...++++.++|++||+++|.||++. |+ +++|.  +....++  +  .+|++  +++|
T Consensus       173 ~~~~~v~~~~v~~~~G~----~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~--~~~~~~~--~~~~~~i~~~S~sK  244 (397)
T PRK06939        173 ARHKLIATDGVFSMDGD----IAPLPEICDLADKYDALVMVDDSHAVGFVGENGR--GTVEHFG--VMDRVDIITGTLGK  244 (397)
T ss_pred             CCCeEEEEecCcCCCCC----cCCHHHHHHHHHHhCCEEEEECcccccCcCCCCC--CHHHHcC--CCCCCcEEEEECHH
Confidence            37888998888876665    2348999999999999999999995 54 44553  2334455  4  46788  6677


Q ss_pred             C
Q psy1628         114 N  114 (114)
Q Consensus       114 ~  114 (114)
                      +
T Consensus       245 ~  245 (397)
T PRK06939        245 A  245 (397)
T ss_pred             H
Confidence            3

>cd00609 AAT_like Aspartate aminotransferase family

Probab=97.88  E-value=3.2e-05  Score=59.32  Aligned_cols=52  Identities=13%  Similarity=0.145  Sum_probs=44.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++++.....|. ..+.+.++++.++|+++|+++|+||+++++...+.
T Consensus       131 ~~~~~v~i~~~~~~tG~-~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~  182 (350)
T cd00609         131 PKTKLLYLNNPNNPTGA-VLSEEELEELAELAKKHGILIISDEAYAELVYDGE  182 (350)
T ss_pred             ccceEEEEECCCCCCCc-ccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCc
Confidence            68999999996666675 45788999999999999999999999999876665

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=97.80  E-value=0.00013  Score=56.78  Aligned_cols=80  Identities=16%  Similarity=0.186  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCcc-chhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTH-WWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~-~~~~~~~g  101 (114)
                      +.+++.++++.  .   .+.++++++++....|...    .++++.++|+++|+++|.||+++ +++.+.. ......++
T Consensus       133 ~~l~~~~~~~~--~---~~~~~v~~~~~~~~~G~~~----~~~~i~~l~~~~~~~li~De~~~-~~~~~~~~~~~~~~~~  202 (360)
T TIGR00858       133 EHLERLLEKNR--G---ERRKLIVTDGVFSMDGDIA----PLPQLVALAERYGAWLMVDDAHG-TGVLGEDGRGTLEHFG  202 (360)
T ss_pred             HHHHHHHHHcc--c---CCCeEEEEeCCccCCCCCc----CHHHHHHHHHHcCcEEEEECccc-ccCcCCCCCchHHhcC
Confidence            35666665531  1   2578888888766555333    27899999999999999999997 4333320 11234456


Q ss_pred             CCCCcC-----EEEeecC
Q psy1628         102 DDIIPD-----IVTVVWN  114 (114)
Q Consensus       102 ~~v~PD-----ivt~gK~  114 (114)
                        +.||     +.+++|+
T Consensus       203 --~~~~~~~i~i~s~sK~  218 (360)
T TIGR00858       203 --LKPEPVDIQVGTLSKA  218 (360)
T ss_pred             --CCccCCcEEEEechhh
Confidence              6666     6677774

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=97.79  E-value=0.00013  Score=58.20  Aligned_cols=82  Identities=23%  Similarity=0.216  Sum_probs=52.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc-ccc-cccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ-VGF-GRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGf-gRtG~~~~~~~~~  100 (114)
                      +.+++.+.+.....   .+...++++++....|...+    ++++.++|++||+++|.||++ .|+ +..|.  ...+..
T Consensus       155 ~~l~~~i~~~~~~~---~~~~~v~~~~v~~~tG~~~~----l~~i~~la~~~~~~li~De~~~~g~~~~~~~--~~~~~~  225 (393)
T TIGR01822       155 ADLEAQLKEARAAG---ARHRLIATDGVFSMDGVIAP----LDEICDLADKYDALVMVDECHATGFLGPTGR--GSHELC  225 (393)
T ss_pred             HHHHHHHHhhhhcC---CCceEEEEeCCccCCCCcCC----HHHHHHHHHHcCCEEEEECCccccCcCCCCC--chHHhc
Confidence            34556665431001   37788999988776676543    799999999999999999998 354 34443  123344


Q ss_pred             CCCCCcCEE--Eeec
Q psy1628         101 GDDIIPDIV--TVVW  113 (114)
Q Consensus       101 g~~v~PDiv--t~gK  113 (114)
                      +..-.+|++  +++|
T Consensus       226 ~~~~~~di~~~s~sK  240 (393)
T TIGR01822       226 GVMGRVDIITGTLGK  240 (393)
T ss_pred             CCCCCCeEEEEEChH
Confidence            411146787  4566

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=97.74  E-value=7.8e-05  Score=59.53  Aligned_cols=43  Identities=14%  Similarity=0.197  Sum_probs=36.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .+++++++++.. ..|.+   .+++++++++|++||+++|+|++++.
T Consensus       158 ~~t~~viv~~~~-~~G~~---~~~l~~i~~la~~~g~~livD~~~~~  200 (398)
T cd00613         158 EEVAALMVQYPN-TLGVF---EDLIKEIADIAHSAGALVYVDGDNLN  200 (398)
T ss_pred             CCeEEEEEECCC-CCcee---cchHHHHHHHHHhcCCEEEEEecccc
Confidence            578999999864 45766   47899999999999999999998753

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>PLN02721 threonine aldolase

Probab=97.64  E-value=0.00012  Score=57.17  Aligned_cols=46  Identities=13%  Similarity=0.051  Sum_probs=40.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++++.+.+.|....+.+.++++.++|+++|+.+|+||.+.
T Consensus       136 ~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~  181 (353)
T PLN02721        136 PTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARI  181 (353)
T ss_pred             CcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhh
Confidence            3788999999988766677899999999999999999999999875

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=97.63  E-value=0.00019  Score=57.30  Aligned_cols=64  Identities=33%  Similarity=0.381  Sum_probs=43.4

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEE---EeecC
Q psy1628          44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV---TVVWN  114 (114)
Q Consensus        44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDiv---t~gK~  114 (114)
                      ++++...+.-.|...+    .++++++++.+++++|.||+.++|++.|. ....+..+  ..|+++   ++||+
T Consensus       163 ~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE~y~~~~~~~~-~~~~~~~~--~~~~~i~~~SfSK~  229 (368)
T PRK03317        163 VVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDEAYAEFRRSGT-PSALTLLP--EYPRLVVSRTMSKA  229 (368)
T ss_pred             EEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeCCchhhcccCC-cCHHHHHH--hCCCEEEEEechhh
Confidence            4444433433454444    44677777777999999999999987775 44455555  678888   77884

>PLN02483 serine palmitoyltransferase

Probab=97.60  E-value=0.00018  Score=60.84  Aligned_cols=65  Identities=25%  Similarity=0.351  Sum_probs=48.1

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhcCCCCCc---CEE--EeecC
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQGDDIIP---DIV--TVVWN  114 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~g~~v~P---Div--t~gK~  114 (114)
                      -..+++|++.+..|..    ..++++.++|++||+++|+||+++ | +|++|.  ...++++  +.|   |++  +++|+
T Consensus       241 k~livve~v~s~~G~~----~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~--g~~~~~~--v~~~~~dI~~~SfSKs  312 (489)
T PLN02483        241 KIIVIVEGIYSMEGEL----CKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGR--GVCELLG--VDPADVDIMMGTFTKS  312 (489)
T ss_pred             eEEEEECCCCCCCCcc----cCHHHHHHHHHHcCCEEEEECcCccCccCCCCC--chHHhcC--CCcccCcEEEEecchh
Confidence            4578889887654433    368899999999999999999997 2 467775  2456667  654   777  77874

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=97.48  E-value=0.00087  Score=52.16  Aligned_cols=54  Identities=24%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+++++.+.. .+   .+.+.+++++.+...|...+    ++++.++|+++|+++|+||++.
T Consensus       119 ~le~~i~~~~-~~---~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~livD~a~~  172 (349)
T cd06454         119 DLEKLLREAR-RP---YGKKLIVTEGVYSMDGDIAP----LPELVDLAKKYGAILFVDEAHS  172 (349)
T ss_pred             HHHHHHHHhh-cc---CCCeEEEEeccccCCCCccC----HHHHHHHHHHcCCEEEEEcccc
Confidence            4666666531 12   46788899888777776533    7999999999999999999985

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=97.01  E-value=0.0028  Score=53.43  Aligned_cols=58  Identities=16%  Similarity=0.061  Sum_probs=46.0

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.+.++  ++   +++.++++..-....|..+.+.+.+++++++|++||+++|.|+.+.
T Consensus       164 e~Le~~i~~~--~~---~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~  221 (460)
T PRK13238        164 EKLEALIEEV--GA---ENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARF  221 (460)
T ss_pred             HHHHHHHhhc--CC---CceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence            5666777654  23   5799999986655555577789999999999999999999999775

>TIGR01814 kynureninase kynureninase

Probab=96.99  E-value=0.0029  Score=51.34  Aligned_cols=43  Identities=14%  Similarity=0.144  Sum_probs=38.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      +++..+.+..+....|...|    ++++.++|+++|+++++|++|+.
T Consensus       170 ~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~~  212 (406)
T TIGR01814       170 DDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHAV  212 (406)
T ss_pred             CCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEccccc
Confidence            57889999999888887776    88999999999999999999983

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=96.66  E-value=0.0092  Score=46.60  Aligned_cols=52  Identities=15%  Similarity=0.126  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      -+.+++.++++       .++.++++ .|.  ..|...+    ++++.++|+++|+++|+||++..
T Consensus       142 ~~~l~~~l~~~-------~~~k~v~l~~p~--~~G~~~d----l~~I~~~~~~~g~~livDeA~~~  194 (294)
T cd00615         142 PETFKKALIEH-------PDAKAAVITNPT--YYGICYN----LRKIVEEAHHRGLPVLVDEAHGA  194 (294)
T ss_pred             HHHHHHHHHhC-------CCceEEEEECCC--CCCEecC----HHHHHHHHHhcCCeEEEECcchh
Confidence            34566666653       34555444 453  2455443    78999999999999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>TIGR02006 IscS cysteine desulfurase IscS

Probab=96.64  E-value=0.006  Score=49.47  Aligned_cols=61  Identities=11%  Similarity=0.098  Sum_probs=44.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+...+++.......|...+    ++++.++|+++|+++++|++|+ +|...     .+..+  ..+|+++++
T Consensus       141 ~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-~g~~~-----~~~~~--~~~D~~~~s  201 (402)
T TIGR02006       141 DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-VGKIP-----INVNE--LKVDLMSIS  201 (402)
T ss_pred             CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-cCCcc-----cCccc--cCCCEEEEe
Confidence            35677777777777776654    6799999999999999999997 33221     12223  568999887

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.62  E-value=0.0061  Score=50.65  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=42.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV  111 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~  111 (114)
                      .++.++++|......|...+    ++++.++|+++|+++|+||+++.    +.   ..+...  ..+|+++.
T Consensus       147 ~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a~----~~---~~~pl~--~gaDivv~  205 (427)
T PRK05994        147 PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLAS----PY---LIRPIE--HGADIVVH  205 (427)
T ss_pred             cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCccc----cc---cCCccc--cCCcEEEE
Confidence            46788999876665665553    78999999999999999999962    21   122233  55787763

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=96.54  E-value=0.007  Score=48.29  Aligned_cols=61  Identities=18%  Similarity=0.279  Sum_probs=42.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++..+++.-.+...|...+    ++++.++|+++|+++++|++|+ +|..-     .+...  ..+|+++++
T Consensus       135 ~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g~~~-----~~~~~--~~~D~~~~s  195 (379)
T TIGR03402       135 DDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VGKIP-----IDLKE--MNIDMLSLS  195 (379)
T ss_pred             CCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-ccccc-----cCccc--CCCCEEEEc
Confidence            35566767666666676665    4689999999999999999997 33221     12222  457888887

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>PRK07682 hypothetical protein; Validated

Probab=96.54  E-value=0.012  Score=47.05  Aligned_cols=52  Identities=15%  Similarity=0.072  Sum_probs=39.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      +++.++++..-+.-.|. ..+.+.++++.++|++|++++|.||+...|...+.
T Consensus       153 ~~~~~v~~~~p~NPtG~-~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~  204 (378)
T PRK07682        153 AKTKAILLCSPNNPTGA-VLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEA  204 (378)
T ss_pred             cccEEEEEECCCCCcCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCC
Confidence            35666655433333454 66788999999999999999999999998865553

>PRK06225 aspartate aminotransferase; Provisional

Probab=96.49  E-value=0.0062  Score=48.78  Aligned_cols=47  Identities=13%  Similarity=0.105  Sum_probs=35.0

Q ss_pred             CceEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFF-AESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAvi-iEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +++.+++ ..|. ...|. ..+.+.++++.++|+++|+++|.||++..|.
T Consensus       156 ~~~~~v~l~~p~-NptG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  203 (380)
T PRK06225        156 ENTRLIYLIDPL-NPLGS-SYTEEEIKEFAEIARDNDAFLLHDCTYRDFA  203 (380)
T ss_pred             CCceEEEEeCCC-CCCCc-CCCHHHHHHHHHHHHHCCcEEEEehhHHHHh
Confidence            3555554 5563 22344 4577889999999999999999999998773

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=96.49  E-value=0.017  Score=48.21  Aligned_cols=81  Identities=22%  Similarity=0.237  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~  100 (114)
                      +.+|+.+++....+   .+-.-++.|.+-+-.|-+.|    ++++.+++++|+..+++||... |. |.+|.  ...+++
T Consensus       156 ~~Le~~l~~~~~~~---~~~~~IvtegVfSMdGdiAp----L~~l~~L~~ky~a~L~VDEAHa~Gv~G~~Gr--G~~e~~  226 (388)
T COG0156         156 DHLEALLEEARENG---ARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEAHAVGVLGPNGR--GLAEHF  226 (388)
T ss_pred             HHHHHHHHhhhccC---CCceEEEEeccccCCCCcCC----HHHHHHHHHHhCcEEEEEccccccccCCCCc--cHHHHh
Confidence            67888887742111   14678899998776564444    5689999999999999999986 22 55665  446677


Q ss_pred             CCCCCcC-----EEEeecC
Q psy1628         101 GDDIIPD-----IVTVVWN  114 (114)
Q Consensus       101 g~~v~PD-----ivt~gK~  114 (114)
                      |  +.|+     +.|+||+
T Consensus       227 g--~~~~~vdi~~gTlsKA  243 (388)
T COG0156         227 G--LEPEEVDIIVGTLGKA  243 (388)
T ss_pred             C--CCCccceEEEEEchhh
Confidence            8  7765     3456764

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=96.47  E-value=0.0083  Score=46.81  Aligned_cols=39  Identities=13%  Similarity=0.083  Sum_probs=30.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++....|   .. .   -+++++++|+++|+++|.|++++
T Consensus       105 ~~~~~v~~~~~~G---~~-~---~~~~i~~l~~~~~i~li~D~a~~  143 (352)
T cd00616         105 PRTKAIIPVHLYG---NP-A---DMDAIMAIAKRHGLPVIEDAAQA  143 (352)
T ss_pred             cCCeEEEEECCCC---Cc-C---CHHHHHHHHHHcCCeEEEECCCC
Confidence            4677787766543   22 2   37899999999999999999998

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=96.47  E-value=0.0091  Score=46.33  Aligned_cols=42  Identities=17%  Similarity=0.156  Sum_probs=33.5

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ   84 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~   84 (114)
                      +..+++++.....|++.  +.+.++++.++|+++|+++|+||..
T Consensus       127 ~~~~v~l~~p~n~g~~~--~~~~l~~i~~~~~~~~~~livDea~  168 (338)
T cd06502         127 PPSLVSLENTTEGGTVY--PLDELKAISALAKENGLPLHLDGAR  168 (338)
T ss_pred             cceEEEEEeecCCcccc--CHHHHHHHHHHHHHcCCeEeechHH
Confidence            56778877654444433  8889999999999999999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=96.42  E-value=0.019  Score=48.10  Aligned_cols=67  Identities=18%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCce-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          11 IGRYIILLAVVHLFFERIFLSASLYPFLFLYP-CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        11 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i-AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      -|||.+++.    .||+.|.+        +++ .-++.-|  .+-+-..-+.+.|.++.++|.+||+++|.|||.+=+--
T Consensus       140 ~~~y~iD~~----~LE~~~~~--------~~vkl~iLCnP--HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~  205 (388)
T COG1168         140 DGRYEIDFD----ALEKAFVD--------ERVKLFILCNP--HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVL  205 (388)
T ss_pred             CCcEEecHH----HHHHHHhc--------CCccEEEEeCC--CCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccc
Confidence            356666554    35555555        343 3344444  33333788999999999999999999999999998866


Q ss_pred             cC
Q psy1628          90 VG   91 (114)
Q Consensus        90 tG   91 (114)
                      +|
T Consensus       206 ~g  207 (388)
T COG1168         206 GG  207 (388)
T ss_pred             cC
Confidence            77

>PRK08960 hypothetical protein; Provisional

Probab=96.40  E-value=0.019  Score=46.14  Aligned_cols=64  Identities=20%  Similarity=0.170  Sum_probs=43.0

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV  111 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~  111 (114)
                      ....++..|- .-.| ...+.+-++++.++|++||+++|.||+...|...+. ..  ....  ..++++++
T Consensus       166 ~~~i~i~~p~-NPtG-~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~-~~--~~~~--~~~~vi~~  229 (387)
T PRK08960        166 TVGALVASPA-NPTG-TLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVD-AA--SVLE--VDDDAFVL  229 (387)
T ss_pred             ceEEEEECCC-CCCC-cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC-CC--Chhh--ccCCEEEE
Confidence            4455666663 2234 455788999999999999999999999988743222 11  2233  55677763

>KOG0259|consensus

Probab=96.28  E-value=0.025  Score=47.87  Aligned_cols=60  Identities=15%  Similarity=0.067  Sum_probs=46.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      +.+|.+.++        +.+|-+|+-|---.|  ...+.+=|+++.+.|+++|+++|+|||..-+--.++
T Consensus       190 ~~veal~DE--------NT~AivviNP~NPcG--nVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~  249 (447)
T KOG0259|consen  190 DGVEALADE--------NTVAIVVINPNNPCG--NVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDK  249 (447)
T ss_pred             HHHHHhhcc--------CeeEEEEeCCCCCCc--ccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCC
Confidence            456666655        578888999975444  467889999999999999999999999865533333

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=96.28  E-value=0.015  Score=48.36  Aligned_cols=42  Identities=21%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++|....-.|...+    ++++.++|+++|+++|+||.+.
T Consensus       142 ~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a  183 (425)
T PRK06084        142 ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVA  183 (425)
T ss_pred             cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            36778999876665665554    6999999999999999999986

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=96.23  E-value=0.017  Score=44.90  Aligned_cols=30  Identities=33%  Similarity=0.602  Sum_probs=24.3

Q ss_pred             CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          54 GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        54 gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .|...+    ++++.++|++||+++|+|++++ +|
T Consensus       138 ~G~~~~----~~~i~~l~~~~~~~livD~~~s-~g  167 (355)
T TIGR03301       138 TGILNP----LEAIAKVARSHGAVLIVDAMSS-FG  167 (355)
T ss_pred             ccchhH----HHHHHHHHHHcCCEEEEEeccc-cC
Confidence            355443    6899999999999999999876 54

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=96.21  E-value=0.015  Score=47.40  Aligned_cols=43  Identities=19%  Similarity=0.212  Sum_probs=33.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++.++++|......|...    -++++.++|+++|+++|+||.++.
T Consensus       138 ~~tklV~le~p~np~g~~~----dl~~I~~la~~~gi~livD~a~~~  180 (380)
T TIGR01325       138 PNTKLVFVETPSNPLGELV----DIAALAELAHAIGALLVVDNVFAT  180 (380)
T ss_pred             CCceEEEEECCCCCCCeee----CHHHHHHHHHHcCCEEEEECCCcc
Confidence            4678999997655444333    379999999999999999999863

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=96.19  E-value=0.012  Score=46.40  Aligned_cols=31  Identities=29%  Similarity=0.261  Sum_probs=26.5

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          53 CGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        53 ~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ..|...+    ++++.++|+++|+++++||.++++
T Consensus       163 ~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~  193 (371)
T PRK13520        163 ELGQVDP----IPELSKIALENGIFLHVDAAFGGF  193 (371)
T ss_pred             CCcccCC----HHHHHHHHHHcCCCEEEEecchhH
Confidence            4565554    899999999999999999999876

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=96.12  E-value=0.021  Score=45.09  Aligned_cols=42  Identities=17%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++.......|...+    ++++.++|+++|+++|+|++++
T Consensus       136 ~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~  177 (376)
T TIGR01977       136 TNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT  177 (376)
T ss_pred             CCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc
Confidence            45667777766555666655    5789999999999999999996

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=96.11  E-value=0.015  Score=48.00  Aligned_cols=42  Identities=17%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +++.++++|....-.|... +   ++++.++|+++|+++|+||++.
T Consensus       141 ~~t~~V~le~p~NPtg~v~-d---l~~I~~la~~~~i~livD~t~~  182 (418)
T TIGR01326       141 ENTKAVFAETIGNPAINVP-D---IEAIAEVAHAHGVPLIVDNTFA  182 (418)
T ss_pred             cCCeEEEEECCCCCCCeec-C---HHHHHHHHHHcCCEEEEECCCc
Confidence            4678899987654445443 3   7899999999999999999985

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK07777 aminotransferase; Validated

Probab=95.96  E-value=0.026  Score=45.28  Aligned_cols=48  Identities=17%  Similarity=0.088  Sum_probs=37.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .++.++++...+.-.|.. .+.+.++++.++|+++++++|.||+...+.
T Consensus       158 ~~~~~v~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~  205 (387)
T PRK07777        158 PRTRALIVNSPHNPTGTV-LTAAELAAIAELAVEHDLLVITDEVYEHLV  205 (387)
T ss_pred             cccEEEEEcCCCCCCCcc-CCHHHHHHHHHHHHhcCcEEEEeccchhcc
Confidence            356677776545445654 478899999999999999999999998774

>PRK06108 aspartate aminotransferase; Provisional

Probab=95.95  E-value=0.016  Score=46.08  Aligned_cols=48  Identities=29%  Similarity=0.252  Sum_probs=37.0

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      ++.++++...+.-.|.. .+.+.++++.++|+++|+++|.||+..+|..
T Consensus       158 ~~~~i~l~~p~NPtG~~-~~~~~~~~l~~~~~~~~~~li~De~y~~~~~  205 (382)
T PRK06108        158 RTRALFINSPNNPTGWT-ASRDDLRAILAHCRRHGLWIVADEVYERLYY  205 (382)
T ss_pred             cceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCcEEEEehhhhhhcc
Confidence            45566665434334544 5789999999999999999999999998843

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=95.94  E-value=0.025  Score=44.64  Aligned_cols=61  Identities=18%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+...+++.......|...+    ++++.++|+++|+++|+|+++. +|..-   +..+.    ..+|+++++
T Consensus       137 ~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-~g~~~---~~~~~----~~~D~~~~s  197 (353)
T TIGR03235       137 PDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-VGKIT---VDLSA----DRIDLISCS  197 (353)
T ss_pred             CCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-cCCcc---ccccc----cCCCEEEee
Confidence            35677777777666677655    6999999999999999999987 33221   11121    346888776

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=95.88  E-value=0.034  Score=43.93  Aligned_cols=45  Identities=24%  Similarity=0.329  Sum_probs=35.4

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      +.++..|- .-.| ..++.+.++++.++|+++|+++|.||+..+|..
T Consensus       128 ~v~i~~p~-NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~  172 (330)
T TIGR01140       128 VLVLCNPN-NPTG-RLIPPETLLALAARLRARGGWLVVDEAFIDFTP  172 (330)
T ss_pred             EEEEeCCC-CCCC-CCCCHHHHHHHHHHhHhcCCEEEEECcccccCC
Confidence            55566662 2223 467889999999999999999999999988853

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=95.88  E-value=0.052  Score=43.94  Aligned_cols=42  Identities=12%  Similarity=0.059  Sum_probs=33.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.+++++-..+..|...    -++++.++|+++|+++|+|++++
T Consensus       157 ~~~~lV~l~~~~~~tG~~~----~l~~I~~la~~~g~~livD~a~~  198 (387)
T PRK09331        157 KPPALALLTHVDGNYGNLA----DAKKVAKVAHEYGIPFLLNGAYT  198 (387)
T ss_pred             CCCEEEEEECCCCCCcccc----cHHHHHHHHHHcCCEEEEECCcc
Confidence            3678888876555455433    38899999999999999999987

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=95.80  E-value=0.027  Score=45.45  Aligned_cols=42  Identities=12%  Similarity=0.133  Sum_probs=34.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++|...+-.|...+    ++++.++|+++|+++|+|+...
T Consensus       124 ~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~  165 (369)
T cd00614         124 PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFA  165 (369)
T ss_pred             CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            46788999987665564443    7899999999999999999865

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=95.77  E-value=0.028  Score=47.21  Aligned_cols=59  Identities=15%  Similarity=0.013  Sum_probs=42.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      -+.+++.+.+.  +.   .++++++++--....|-.+.+.+.+++++++|++||+.+|.|+.+.
T Consensus       138 ~e~Le~~I~~~--~~---~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~  196 (431)
T cd00617         138 VAKLEKLIDEV--GA---ENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARF  196 (431)
T ss_pred             HHHHHHHhCcc--cC---CCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence            34566666543  12   4688888873222233478889999999999999999999999975

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>PLN02651 cysteine desulfurase

Probab=95.77  E-value=0.031  Score=44.56  Aligned_cols=42  Identities=17%  Similarity=0.104  Sum_probs=34.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+...+.+.......|...+    ++++.++|+++|+++++|.+|+
T Consensus       137 ~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~  178 (364)
T PLN02651        137 PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA  178 (364)
T ss_pred             CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh
Confidence            35667777766666676655    6799999999999999999998

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=95.77  E-value=0.022  Score=47.60  Aligned_cols=39  Identities=10%  Similarity=-0.072  Sum_probs=32.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++.+..|.       +..+++++++|+++|+++|.|+.|+
T Consensus       158 ~~tkaVi~~~~~G~-------p~dl~~I~~la~~~gi~vIeDaa~a  196 (438)
T PRK15407        158 PKTKAIMIAHTLGN-------PFDLAAVKAFCDKHNLWLIEDNCDA  196 (438)
T ss_pred             cCCeEEEEeCCCCC-------hhhHHHHHHHHHHCCCEEEEECccc
Confidence            46788998886653       2467999999999999999999997

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=95.72  E-value=0.1  Score=40.93  Aligned_cols=62  Identities=16%  Similarity=0.057  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCCCCCCCC--ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628          23 LFFERIFLSASLYPFLFL--YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV   90 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~--~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt   90 (114)
                      ..+++.+++..  .   .  +..++++.....--| ...+.+.++++.++|++||+.+|.||+...+...
T Consensus       133 ~~l~~~l~~~~--~---~~~~~~~v~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~  196 (363)
T PF00155_consen  133 EALEEALDELP--S---KGPRPKAVLICNPNNPTG-SVLSLEELRELAELAREYNIIIIVDEAYSDLIFG  196 (363)
T ss_dssp             HHHHHHHHTSH--T---TTETEEEEEEESSBTTTT-BB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSS
T ss_pred             ccccccccccc--c---cccccceeeecccccccc-cccccccccchhhhhcccccceeeeeceeccccC
Confidence            35666666642  1   2  356666654433334 4668889999999999999999999999988433

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK14012 cysteine desulfurase; Provisional

Probab=95.68  E-value=0.034  Score=45.01  Aligned_cols=61  Identities=15%  Similarity=0.111  Sum_probs=42.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+..++++.......|...+    ++++.++|+++|+++|.|++|+ +|..-   +..+  .  ..+|+++++
T Consensus       143 ~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~~---~~~~--~--~~~D~~~~s  203 (404)
T PRK14012        143 DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKVP---IDLS--K--LKVDLMSFS  203 (404)
T ss_pred             CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCcc---cCcc--c--CCCCEEEEe
Confidence            35567777777666676554    6899999999999999999997 33221   1111  2  457888776

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=95.60  E-value=0.048  Score=43.57  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++...+++.-.....|...+    ++++.++|+++|+++|+||++.
T Consensus       155 ~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~  196 (397)
T TIGR01976       155 PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY  196 (397)
T ss_pred             CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh
Confidence            35566666655555565543    8899999999999999999985

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=95.57  E-value=0.089  Score=43.53  Aligned_cols=47  Identities=17%  Similarity=0.107  Sum_probs=37.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +..+.++.-|- .--| ...+.+-++++.++|+++|+++|.||+...|-
T Consensus       190 ~~~~i~i~~P~-NPtG-~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~  236 (430)
T PLN00145        190 NTVAMVIINPN-NPCG-SVYSYEHLAKIAETARKLGILVIADEVYDHLT  236 (430)
T ss_pred             CceEEEEeCCC-CCCC-CCCCHHHHHHHHHHHHHcCCEEEEeccchhhc
Confidence            45677777773 2234 46778889999999999999999999998774

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=95.53  E-value=0.068  Score=42.37  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=31.8

Q ss_pred             CCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628          53 CGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV  111 (114)
Q Consensus        53 ~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~  111 (114)
                      ..|...+    ++++.++|+++|+++|+|.+++ +|...   +....    ..+|+++.
T Consensus       141 ~tG~~~~----i~~I~~l~~~~g~~livD~~~~-~g~~~---~~~~~----~~~D~~~~  187 (363)
T TIGR02326       141 TTGILNP----IEAVAKLAHRHGKVTIVDAMSS-FGGIP---IDIAE----LHIDYLIS  187 (363)
T ss_pred             CccccCc----HHHHHHHHHHcCCEEEEEcccc-ccCcc---cchhh----cCccEEEe
Confidence            3455554    5899999999999999999986 54332   12222    34677765

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=95.52  E-value=0.048  Score=45.61  Aligned_cols=47  Identities=15%  Similarity=0.050  Sum_probs=37.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .++.++++ +-+++---...+++.++++.++|++|++.+|.||+...+
T Consensus       199 ~~vk~lll-~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~  245 (447)
T PLN02607        199 IRVRGVLI-TNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGS  245 (447)
T ss_pred             CCeeEEEE-eCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEecccccc
Confidence            57877777 444553335777899999999999999999999999874

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=95.52  E-value=0.06  Score=42.94  Aligned_cols=58  Identities=16%  Similarity=0.054  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADE   82 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DE   82 (114)
                      -+.+++.++++..   +..+++.+.+|--....|-.+.+.+.+++++++|++||+.+.+|=
T Consensus       108 ~~~l~~~~~~~~~---h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDG  165 (290)
T PF01212_consen  108 PEDLEAAIEEHGA---HHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDG  165 (290)
T ss_dssp             HHHHHHHHHHHTG---TSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEE
T ss_pred             HHHHHHHhhhccc---cCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEeh
Confidence            3456666666421   126899999999877767788999999999999999999999993

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=95.37  E-value=0.064  Score=42.41  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=40.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      +++.++++.-.....|...+    ++++.++|+++|++++.|+.++ ++...   +...  .  ..+|+++++
T Consensus       138 ~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~--~--~~~d~~~~s  198 (373)
T cd06453         138 ERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS-AGHMP---VDVQ--D--LGCDFLAFS  198 (373)
T ss_pred             CCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh-cCcee---eecc--c--cCCCEEEec
Confidence            35667776544444455543    5799999999999999999886 32221   1111  2  457888887

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=95.25  E-value=0.058  Score=43.13  Aligned_cols=41  Identities=20%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +...+++.-.....|...+    ++++.++|+++|+++++|+++.
T Consensus       140 ~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~  180 (382)
T TIGR03403       140 KTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA  180 (382)
T ss_pred             CCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh
Confidence            4566667655556676665    5689999999999999999987

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=95.13  E-value=0.062  Score=43.23  Aligned_cols=60  Identities=15%  Similarity=0.042  Sum_probs=38.3

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      +...+.+.-.....|...+    ++++.++|+++|+++++|++|. ++.. .  ....  .  ..+|+.+++
T Consensus       157 ~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~~~-~--~~~~--~--~~~d~~~~s  216 (398)
T TIGR03392       157 RTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQG-VVHG-P--PDVQ--A--LDIDFYAFS  216 (398)
T ss_pred             CceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-cCCC-C--CChh--h--cCCCEEEEe
Confidence            4455555434444565543    5789999999999999999996 2221 1  1112  2  456888887

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK07550 hypothetical protein; Provisional

Probab=95.08  E-value=0.071  Score=42.79  Aligned_cols=43  Identities=23%  Similarity=0.323  Sum_probs=33.0

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      +.++.-|- .-.|. ..+.+.++++.++|++||+.+|.||+...|
T Consensus       166 ~v~~~~P~-NPtG~-~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~  208 (386)
T PRK07550        166 AIALVTPN-NPTGV-VYPPELLHELYDLARRHGIALILDETYRDF  208 (386)
T ss_pred             EEEEeCCC-CCCCc-ccCHHHHHHHHHHHHHcCeEEEEeccchhh
Confidence            33555553 22343 457889999999999999999999999877

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=94.97  E-value=0.094  Score=43.00  Aligned_cols=41  Identities=22%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++.++++|....--|...+    ++++.++|+++|+++|+||.++
T Consensus       137 ~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a  177 (385)
T PRK08574        137 RTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFA  177 (385)
T ss_pred             CceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCC
Confidence            6778888765544443333    6799999999999999999984

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=94.94  E-value=0.093  Score=43.15  Aligned_cols=42  Identities=29%  Similarity=0.250  Sum_probs=33.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|-...-.|...+    ++++.++|+++|+++|+||.++
T Consensus       149 ~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a  190 (398)
T PRK07504        149 PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFA  190 (398)
T ss_pred             cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCcc
Confidence            46778888876554454443    8899999999999999999986

>PRK08175 aminotransferase; Validated

Probab=94.93  E-value=0.1  Score=42.17  Aligned_cols=58  Identities=12%  Similarity=0.011  Sum_probs=41.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      +.+++.++++.      .++.++++.. +.+-.-...+.+-++++.++|++||+.+|.||+...+
T Consensus       152 ~~l~~~l~~~~------~~~~~v~i~~-p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l  209 (395)
T PRK08175        152 NELERAIRESY------PKPKMMILGF-PSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADI  209 (395)
T ss_pred             HHHHHHHhhcc------CCceEEEEeC-CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhh
Confidence            44566665531      4667777762 2332226777888899999999999999999999876

>PRK07324 transaminase; Validated

Probab=94.92  E-value=0.17  Score=40.71  Aligned_cols=50  Identities=18%  Similarity=0.232  Sum_probs=36.5

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ++.++++..-..-.| ...+++.++++.++|++||+++|.||+..++...+
T Consensus       153 ~~kli~i~~p~NPtG-~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~  202 (373)
T PRK07324        153 NTKLICINNANNPTG-ALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG  202 (373)
T ss_pred             CCcEEEEeCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC
Confidence            444555543222234 45678899999999999999999999998885544

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=94.90  E-value=0.11  Score=42.08  Aligned_cols=50  Identities=12%  Similarity=0.090  Sum_probs=36.9

Q ss_pred             CceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++. | +.-.| ...+.+-++++.++|++|++++|.||+...|--.|
T Consensus       165 ~~~~~i~l~~P-~NPtG-~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~  215 (391)
T PRK07309        165 DKLKAVILNYP-ANPTG-VTYSREQIKALADVLKKYDIFVISDEVYSELTYTG  215 (391)
T ss_pred             CCeEEEEEECC-CCCCC-cCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCC
Confidence            467777776 5 22234 45566778999999999999999999998774333

>PRK08636 aspartate aminotransferase; Provisional

Probab=94.87  E-value=0.22  Score=40.42  Aligned_cols=62  Identities=6%  Similarity=0.001  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          20 VVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        20 ~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .....+++.++++.      .++.++++- .+.+---...+.+-+++|.++|++|++++|.||+...|-
T Consensus       160 ~l~~~l~~~~~~~~------~~~~~i~~~-~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~  221 (403)
T PRK08636        160 QFFENLEKALRESS------PKPKYVVVN-FPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADIT  221 (403)
T ss_pred             hhhhHHHHHHhhcc------CCceEEEEe-CCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhc
Confidence            33445666676542      456666665 223322256677788899999999999999999988763

>PRK05764 aspartate aminotransferase; Provisional

Probab=94.87  E-value=0.15  Score=40.78  Aligned_cols=47  Identities=13%  Similarity=0.032  Sum_probs=33.4

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++..-..-.| ...+.+-++++.++|++||+++|.||+...+.
T Consensus       164 ~~~~v~~~~p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~  210 (393)
T PRK05764        164 KTKALILNSPSNPTG-AVYSPEELEAIADVAVEHDIWVLSDEIYEKLV  210 (393)
T ss_pred             cceEEEEECCCCCCC-cccCHHHHHHHHHHHHHCCcEEEEecccccee
Confidence            344444432222234 34566889999999999999999999998764

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=94.84  E-value=0.066  Score=45.94  Aligned_cols=55  Identities=18%  Similarity=0.021  Sum_probs=43.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADE   82 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DE   82 (114)
                      +.+++.+.++  ++   +++..+..+-.....|-.+.|.+.+++++++|++||+.+.+|=
T Consensus       170 ~~le~~I~~~--g~---~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDg  224 (467)
T TIGR02617       170 EGLERGIEEV--GP---NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDS  224 (467)
T ss_pred             HHHHHHHhhc--CC---CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEh
Confidence            3466666664  33   6787777776655567789999999999999999999999994

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=94.82  E-value=0.1  Score=41.97  Aligned_cols=60  Identities=15%  Similarity=0.063  Sum_probs=38.4

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      +...+++.-.....|...+    ++++.++|+++|+++|+|+++. +|..-     .....  ..+|+++.+
T Consensus       160 ~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~~-----~~~~~--~~~d~~~~s  219 (401)
T PRK10874        160 RTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHFP-----ADVQA--LDIDFYAFS  219 (401)
T ss_pred             CcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-ccccc-----CCchh--cCCCEEEEe
Confidence            4455555544444565543    5789999999999999999996 22221     11112  457887776

>PRK05939 hypothetical protein; Provisional

Probab=94.75  E-value=0.084  Score=43.57  Aligned_cols=42  Identities=21%  Similarity=0.236  Sum_probs=33.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|......|..    .=++++.++|+++|+++|+|+.++
T Consensus       130 ~~tklV~vesp~NptG~v----~dl~~I~~la~~~gi~livD~t~a  171 (397)
T PRK05939        130 PNTRMVFVETIANPGTQV----ADLAGIGALCRERGLLYVVDNTMT  171 (397)
T ss_pred             CCCeEEEEECCCCCCCCH----HhHHHHHHHHHHcCCEEEEECCcc
Confidence            467788898766555544    238899999999999999999985

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=94.74  E-value=0.1  Score=42.67  Aligned_cols=43  Identities=14%  Similarity=0.076  Sum_probs=33.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++.++++|-...-.|...+    ++++.++|+++|+++|+|+.++.
T Consensus       133 ~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a~  175 (380)
T PRK06176        133 PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFAT  175 (380)
T ss_pred             cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCccc
Confidence            46788888765444454433    77999999999999999999874

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=94.74  E-value=0.12  Score=41.76  Aligned_cols=46  Identities=13%  Similarity=0.055  Sum_probs=36.6

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ..+++-|-+.+---...+.+.++++.++|++|++.+|.||+...|.
T Consensus       173 ~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~  218 (396)
T PRK09257        173 DVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFG  218 (396)
T ss_pred             CEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccc
Confidence            3566666655532256788999999999999999999999999885

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=94.73  E-value=0.078  Score=41.65  Aligned_cols=43  Identities=16%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++-......|...+    ++++.++|+++|++++.|+++. +|
T Consensus       124 ~~~~v~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~g  166 (356)
T cd06451         124 DIKAVTLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-LG  166 (356)
T ss_pred             CCCEEEEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-cc
Confidence            5566666554444565544    7789999999999999999886 44

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK07568 aspartate aminotransferase; Provisional

Probab=94.71  E-value=0.13  Score=41.14  Aligned_cols=49  Identities=16%  Similarity=0.116  Sum_probs=36.1

Q ss_pred             ceEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCAFF-AESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAvi-iEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ++.+++ .-|- ...| ...+.+-++++.++|+++|+++|.||+..+|...+
T Consensus       162 ~~~~v~i~~p~-NPtG-~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~  211 (397)
T PRK07568        162 KTKAILISNPG-NPTG-VVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDG  211 (397)
T ss_pred             cceEEEEECCC-CCCC-ccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCC
Confidence            444554 4552 2234 46667778999999999999999999999886555

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=94.68  E-value=0.22  Score=40.65  Aligned_cols=50  Identities=16%  Similarity=0.028  Sum_probs=37.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +..+.++.-|- .-.| ...+.+-++++.++|++|++++|.||+...|-..+
T Consensus       170 ~~~~~~~~nP~-NPTG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~  219 (409)
T PLN00143        170 NTIAMVIINPG-NPCG-SVYSYEHLNKIAETARKLGILVIADEVYGHIVFGS  219 (409)
T ss_pred             CCEEEEEECCC-CCCC-CccCHHHHHHHHHHHHHcCCeEEEEccccccccCC
Confidence            35566777772 2234 45677888999999999999999999999874433

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=94.53  E-value=0.13  Score=42.14  Aligned_cols=42  Identities=19%  Similarity=0.126  Sum_probs=33.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|.....    .....-++++.++|+++|+++|+||+++
T Consensus       134 ~~tklV~lesp~Np----~g~~~dl~~I~~la~~~g~~livD~t~a  175 (377)
T TIGR01324       134 PNTKVLFLEAPSSI----TFEIQDIPAIAKAARNPGIVIMIDNTWA  175 (377)
T ss_pred             CCceEEEEECCCCC----CCcHHHHHHHHHHHHHcCCEEEEECCCc
Confidence            46778888865443    2344578999999999999999999996

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PLN02231 alanine transaminase

Probab=94.47  E-value=0.16  Score=43.67  Aligned_cols=47  Identities=17%  Similarity=0.087  Sum_probs=35.9

Q ss_pred             ceEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          41 YPCAF-FAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        41 ~iAAv-iiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      ++.++ ++-|  ++---...+.+-+++|.++|++||+++|.||+..-+-.
T Consensus       271 ~~k~ivl~nP--~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y  318 (534)
T PLN02231        271 TVRALVVINP--GNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVY  318 (534)
T ss_pred             CeEEEEEeCC--CCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhccc
Confidence            56554 4444  44222567899999999999999999999999988743

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=94.47  E-value=0.29  Score=39.65  Aligned_cols=47  Identities=15%  Similarity=0.087  Sum_probs=34.6

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +.++.-| ..-.| ...+.+-++++.++|+++|+.+|.||+...|...+
T Consensus       172 ~v~i~~p-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~  218 (403)
T TIGR01265       172 AIVVINP-SNPCG-SVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD  218 (403)
T ss_pred             EEEEecC-CCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC
Confidence            3444445 22234 46677778999999999999999999999885444

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PLN02656 tyrosine transaminase

Probab=94.43  E-value=0.29  Score=39.90  Aligned_cols=50  Identities=12%  Similarity=-0.010  Sum_probs=37.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +..+.++..|- .-.| ...+.+-++++.++|++||+++|.||+...|-..+
T Consensus       169 ~~~~v~l~~P~-NPtG-~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~  218 (409)
T PLN02656        169 NTVALVIINPG-NPCG-NVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGS  218 (409)
T ss_pred             CceEEEEECCC-CCCC-CCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCC
Confidence            34566666773 2234 34577889999999999999999999999874333

>PLN00175 aminotransferase family protein; Provisional

Probab=94.42  E-value=0.23  Score=40.74  Aligned_cols=47  Identities=13%  Similarity=0.104  Sum_probs=36.3

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++..-..-.|. ..+.+.++++.++|++|++++|.||+...|-
T Consensus       187 ~~k~i~i~~p~NPtG~-~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~  233 (413)
T PLN00175        187 KTRAILINTPHNPTGK-MFTREELELIASLCKENDVLAFTDEVYDKLA  233 (413)
T ss_pred             CceEEEecCCCCCCCc-CCCHHHHHHHHHHHHHcCcEEEEecccCccc
Confidence            4556666543433454 5578899999999999999999999998774

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=94.34  E-value=0.14  Score=41.46  Aligned_cols=60  Identities=15%  Similarity=0.069  Sum_probs=40.2

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      +...+.+.-.....|...+    ++++.++|+++|+++++|++|+ +|..-   ...+.    ..+|+++.+
T Consensus       164 ~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g~~~---~~~~~----~~~D~~~~s  223 (406)
T PRK09295        164 RTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA-VMHHP---VDVQA----LDCDFYVFS  223 (406)
T ss_pred             CcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc-cCccc---cCchh----cCCCEEEee
Confidence            4556666555555676655    6889999999999999999996 43322   11222    346888776

>PRK07337 aminotransferase; Validated

Probab=94.30  E-value=0.35  Score=38.84  Aligned_cols=49  Identities=24%  Similarity=0.326  Sum_probs=35.0

Q ss_pred             ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +..++++ +.+.+ .| ...+.+-++++.++|+++|+++|.||+...|.-.+
T Consensus       163 ~~~~v~l-~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~  212 (388)
T PRK07337        163 RTRGVLL-ASPSNPTG-TSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDA  212 (388)
T ss_pred             cceEEEE-ECCCCCCC-cCcCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence            4444444 33333 34 45577888999999999999999999988775433

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=94.30  E-value=0.17  Score=42.50  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=31.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++|......|. ..+   ++++.++|+++|+++|+|.+++
T Consensus       154 ~~tk~V~~e~~~Np~~~-v~d---i~~I~~la~~~gi~livD~t~a  195 (437)
T PRK05613        154 PNTKAFFGETFANPQAD-VLD---IPAVAEVAHRNQVPLIVDNTIA  195 (437)
T ss_pred             ccCeEEEEECCCCCCCc-ccC---HHHHHHHHHHcCCeEEEECCCc
Confidence            45677888765443342 233   7899999999999999999985

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=94.28  E-value=0.16  Score=42.02  Aligned_cols=42  Identities=24%  Similarity=0.223  Sum_probs=32.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|-...-.|... +   ++++.++|+++|+++|+||.+.
T Consensus       154 ~~tklV~~esp~Nptg~v~-d---l~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        154 VPTQAVFFETPSNPMQSLV-D---IAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             cCceEEEEECCCCCCCeec-C---HHHHHHHHHHcCCEEEEECCCC
Confidence            4677888886554445333 2   8899999999999999999975

>PTZ00376 aspartate aminotransferase; Provisional

Probab=94.26  E-value=0.17  Score=41.19  Aligned_cols=46  Identities=11%  Similarity=0.125  Sum_probs=35.2

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      .+++=|-+.+---...+.+-++++.++|++|++++|.||+...|-.
T Consensus       178 ~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~  223 (404)
T PTZ00376        178 VVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFAS  223 (404)
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccC
Confidence            3455454444323566889999999999999999999999988843

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=94.25  E-value=0.17  Score=41.34  Aligned_cols=42  Identities=17%  Similarity=0.173  Sum_probs=33.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++|-..+-.|...+    ++++.++|+++|+++|+|+.+.
T Consensus       130 ~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~  171 (378)
T TIGR01329       130 PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMM  171 (378)
T ss_pred             cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCc
Confidence            46788898965544454443    8999999999999999999873

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK06855 aminotransferase; Validated

Probab=94.24  E-value=0.18  Score=41.68  Aligned_cols=48  Identities=17%  Similarity=0.146  Sum_probs=36.5

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      -+.++.-|-  +---...+.+.+++|.++|++||+++|.||+...+...+
T Consensus       173 ~~i~l~~P~--NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~  220 (433)
T PRK06855        173 AGILLINPD--NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG  220 (433)
T ss_pred             eEEEEECCC--CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence            345566663  322257888899999999999999999999999884444

>PLN02187 rooty/superroot1

Probab=94.19  E-value=0.28  Score=41.07  Aligned_cols=50  Identities=16%  Similarity=0.030  Sum_probs=37.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ...+.++.-|- .-.| ...+.+-++++.++|++||+++|.||+...|--.+
T Consensus       204 ~~~~v~i~nP~-NPTG-~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~  253 (462)
T PLN02187        204 NTVAMVVINPN-NPCG-NVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGD  253 (462)
T ss_pred             CcEEEEEeCCC-CCCC-CccCHHHHHHHHHHHHHCCCEEEEeccccccccCC
Confidence            35567777774 2224 56678899999999999999999999998863333

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=94.19  E-value=0.17  Score=39.95  Aligned_cols=42  Identities=21%  Similarity=0.036  Sum_probs=30.6

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ..+.+++.|. ...|...+    ++++.++|+++|+++|+||.+.++
T Consensus       154 ~~~vv~~~~~-~~tG~~~~----~~~i~~l~~~~~~~livD~a~~~~  195 (373)
T TIGR03812       154 TIGIVGIAGT-TELGQIDD----IEELSKIALENGIYLHVDAAFGGF  195 (373)
T ss_pred             cEEEEEECCC-CCCCccCC----HHHHHHHHHHcCCeEEEEcCchhH
Confidence            3455666663 34455532    778999999999999999998754

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=94.17  E-value=0.16  Score=40.78  Aligned_cols=42  Identities=17%  Similarity=0.189  Sum_probs=32.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +++.++++.-.....|...+    ++++.++|+++|+++|+|+.+.
T Consensus       158 ~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~  199 (403)
T TIGR01979       158 EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQA  199 (403)
T ss_pred             cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhh
Confidence            35666666655555566655    7889999999999999999985

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=94.12  E-value=0.36  Score=38.28  Aligned_cols=46  Identities=20%  Similarity=0.262  Sum_probs=33.6

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++.++++.+-..-.| ...+.+-++++.++|++||+.+|.||+..-+
T Consensus       136 ~~~~i~i~~p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~  181 (350)
T TIGR03537       136 ETKIVWINYPHNPTG-ATAPRSYLKETIAMCREHGIILCSDECYTEI  181 (350)
T ss_pred             ccEEEEEeCCCCCcC-cccCHHHHHHHHHHHHHcCcEEEEecccccc
Confidence            344455544222234 5678889999999999999999999998654

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=94.04  E-value=0.31  Score=38.62  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhCCeEEEcccccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++++.++|+++|+++|+|.++ .||
T Consensus       150 ~~~i~~l~~~~~~~livDa~~-~~g  173 (368)
T PRK13479        150 LDEIAAVAKRHGKRLIVDAMS-SFG  173 (368)
T ss_pred             HHHHHHHHHHcCCEEEEEccc-ccC
Confidence            579999999999999999887 464

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=94.03  E-value=0.18  Score=42.14  Aligned_cols=42  Identities=19%  Similarity=0.225  Sum_probs=31.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +++.++++|......|...+    ++++.++|+++|+++|+|+++.
T Consensus       148 ~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a  189 (431)
T PRK08248        148 DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA  189 (431)
T ss_pred             CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC
Confidence            46778888844333354443    5799999999999999999975

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=93.98  E-value=0.19  Score=42.17  Aligned_cols=42  Identities=21%  Similarity=0.244  Sum_probs=33.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|......|...+    ++++.++|+++|+++|+|+.++
T Consensus       154 ~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a  195 (436)
T PRK07812        154 PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIA  195 (436)
T ss_pred             CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            46788999987665554443    5789999999999999999875

>PRK06207 aspartate aminotransferase; Provisional

Probab=93.96  E-value=0.36  Score=39.35  Aligned_cols=46  Identities=15%  Similarity=0.247  Sum_probs=33.8

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.-|- .-.| ...+.+-++++.++|++||+++|.||+..-|-..|
T Consensus       182 v~l~~P~-NPTG-~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~  227 (405)
T PRK06207        182 FLFSNPN-NPAG-VVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDG  227 (405)
T ss_pred             EEECCCC-CCCC-cCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC
Confidence            3444552 2234 45577889999999999999999999998774334

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=93.95  E-value=0.19  Score=42.16  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=32.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++|-.....|.+. +   ++++.++|+++|+++|+|..|+
T Consensus       148 ~~TklV~~e~~~np~g~v~-D---i~~I~~la~~~gi~livD~t~a  189 (433)
T PRK08134        148 PNTRLLFGETLGNPGLEVL-D---IPTVAAIAHEAGVPLLVDSTFT  189 (433)
T ss_pred             CCCeEEEEECCCcccCccc-C---HHHHHHHHHHcCCEEEEECCCc
Confidence            4677888887543334333 3   7899999999999999999985

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=93.88  E-value=0.3  Score=40.65  Aligned_cols=44  Identities=18%  Similarity=0.188  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          64 LREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      ++++.++|+++|+++++|++|+ +|..+...+....    -..|+++++
T Consensus       199 i~~I~~i~~~~ga~l~vDaaq~-~G~i~~~~~~~~~----~~~D~l~~S  242 (452)
T PTZ00094        199 YKRFREICDSVGAYLMADIAHT-SGLVAAGVLPSPF----PYADVVTTT  242 (452)
T ss_pred             HHHHHHHHHHcCCEEEEeccch-hccccCCCCCCCC----CCCcEEEcC
Confidence            5688899999999999999998 5554431111111    135887764

>PRK02948 cysteine desulfurase; Provisional

Probab=93.86  E-value=0.2  Score=39.95  Aligned_cols=45  Identities=22%  Similarity=0.222  Sum_probs=33.3

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV   90 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt   90 (114)
                      +...++++-.....|...+    ++++.++|+++|+++++|++++ ||..
T Consensus       138 ~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~  182 (381)
T PRK02948        138 DTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKL  182 (381)
T ss_pred             CCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-cccc
Confidence            4456666655555676654    5689999999999999999876 6543

>PRK08361 aspartate aminotransferase; Provisional

Probab=93.86  E-value=0.24  Score=39.82  Aligned_cols=46  Identities=9%  Similarity=-0.028  Sum_probs=33.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++.++++.--+.-.|. ..+.+-++++.++|+++++++|.||+...|
T Consensus       166 ~~~~v~i~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~  211 (391)
T PRK08361        166 RTRMIVINYPNNPTGA-TLDKEVAKAIADIAEDYNIYILSDEPYEHF  211 (391)
T ss_pred             ccEEEEEeCCCCCCCc-CcCHHHHHHHHHHHHHcCeEEEEEcccccc
Confidence            4445555522333454 556778899999999999999999999876

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=93.80  E-value=0.21  Score=42.03  Aligned_cols=41  Identities=12%  Similarity=0.033  Sum_probs=32.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ   84 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~   84 (114)
                      .+..++++|. +++--...++   ++++.++|+++|+++|.|+..
T Consensus       146 ~~Tk~I~~e~-pgnP~~~v~D---i~~I~~iA~~~gi~livD~T~  186 (432)
T PRK06702        146 DKTKLVYAES-LGNPAMNVLN---FKEFSDAAKELEVPFIVDNTL  186 (432)
T ss_pred             cCCeEEEEEc-CCCccccccC---HHHHHHHHHHcCCEEEEECCC
Confidence            4677888886 5554333444   999999999999999999986

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=93.75  E-value=0.15  Score=40.63  Aligned_cols=51  Identities=24%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++...+.-.| ...+.+-++++.++|+++|+.+|.||+...|...+
T Consensus       141 ~~~~~v~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~  191 (357)
T TIGR03539       141 VGPDLIWLNSPGNPTG-RVLSVDELRAIVAWARERGAVVASDECYLELGWEG  191 (357)
T ss_pred             cCccEEEEeCCCCCcC-ccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCC
Confidence            4567777764333234 56677888999999999999999999998775433

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=93.67  E-value=0.24  Score=40.37  Aligned_cols=41  Identities=17%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++..+++.-.....|...+    ++++.++|+++|+++|+|+++.
T Consensus       173 ~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~  213 (424)
T PLN02855        173 KTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS  213 (424)
T ss_pred             CceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh
Confidence            4556666655555566655    5688999999999999999995

>PLN02242 methionine gamma-lyase

Probab=93.61  E-value=0.16  Score=42.20  Aligned_cols=43  Identities=14%  Similarity=0.130  Sum_probs=33.4

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      +..++++|-...-.|...    -++++.++|+++|+++|+||+++.+
T Consensus       163 ~tklV~lesp~NPtG~v~----dl~~I~~la~~~gi~livDea~~~~  205 (418)
T PLN02242        163 KTKVLYFESISNPTLTVA----DIPELARIAHEKGVTVVVDNTFAPM  205 (418)
T ss_pred             CCEEEEEecCCCCCCccc----CHHHHHHHHHHhCCEEEEECCCCcc
Confidence            478899996554345433    3799999999999999999998644

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=93.54  E-value=0.22  Score=38.76  Aligned_cols=24  Identities=21%  Similarity=0.120  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHhCCeEEEccccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++++.++|+++|+.+++|+++.++
T Consensus       167 ~~~i~~~~~~~~~~l~vD~a~~~~  190 (345)
T cd06450         167 LEEIADLAEKYDLWLHVDAAYGGF  190 (345)
T ss_pred             HHHHHHHHHHhCCeEEEechhhHH
Confidence            789999999999999999999865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=93.51  E-value=0.41  Score=37.53  Aligned_cols=48  Identities=19%  Similarity=0.216  Sum_probs=30.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      .++.++++.......|...+ .+.++++.+.|+ +++++|+||++..+..
T Consensus       141 ~~~~~v~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~  188 (346)
T TIGR01141       141 DKPKLVFLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSG  188 (346)
T ss_pred             CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcC
Confidence            45667776643444455444 444555555554 5999999999997754

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=93.47  E-value=0.24  Score=41.87  Aligned_cols=44  Identities=14%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +.++.-|- .-.|. ..+.+.++++.++|++|++++|.||+..-|-
T Consensus       284 ~i~i~nP~-NPTG~-v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~  327 (517)
T PRK13355        284 AIVIINPN-NPTGA-LYPREVLQQIVDIAREHQLIIFSDEIYDRLV  327 (517)
T ss_pred             EEEEECCC-CCCCc-CcCHHHHHHHHHHHHHcCcEEEEehhhhhhc
Confidence            44566662 22343 4568899999999999999999999988763

>PLN02397 aspartate transaminase

Probab=93.35  E-value=0.31  Score=40.13  Aligned_cols=44  Identities=11%  Similarity=0.210  Sum_probs=34.4

Q ss_pred             EEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          44 AFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        44 AviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .+++-|-+.+ -| ...+.+.++++.++|++||+++|.||+...|.
T Consensus       196 ~~i~~~~P~NPTG-~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~  240 (423)
T PLN02397        196 FVLLHACAHNPTG-VDPTPEQWEQISDLIKSKNHLPFFDSAYQGFA  240 (423)
T ss_pred             EEEEeCCCCCCCC-CCCCHHHHHHHHHHHHhCCcEEEEecccCCcc
Confidence            4444444443 34 45678899999999999999999999999994

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=93.26  E-value=0.12  Score=42.67  Aligned_cols=49  Identities=14%  Similarity=0.152  Sum_probs=38.6

Q ss_pred             ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ++-++++ -|---. | ...+++.++++.++|++||+.+|.||+..+|-..|
T Consensus       163 ktk~i~ln~P~NPT-G-av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~  212 (393)
T COG0436         163 KTKAIILNSPNNPT-G-AVYSKEELKAIVELAREHDIIIISDEIYEELVYDG  212 (393)
T ss_pred             cceEEEEeCCCCCc-C-cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence            4545555 554222 2 57889999999999999999999999999997776

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=93.26  E-value=0.19  Score=41.21  Aligned_cols=42  Identities=19%  Similarity=0.190  Sum_probs=32.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|......|...+    ++++.++|+++|+++|.||++.
T Consensus       145 ~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~  186 (390)
T PRK08133        145 PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFC  186 (390)
T ss_pred             cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCc
Confidence            46778888865444454432    6899999999999999999974

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=93.26  E-value=0.2  Score=42.86  Aligned_cols=58  Identities=12%  Similarity=-0.030  Sum_probs=41.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+|+.+.++  ++   .+++.+.+|-....+|-.+.|...+++++++|++||+.+|.|=-+.
T Consensus       157 ~~Le~aI~~~--~~---~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~  214 (450)
T TIGR02618       157 KKLQKLIDEV--GA---DKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRC  214 (450)
T ss_pred             HHHHHHhccc--cC---cccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccch
Confidence            4455566543  12   3555566665555444478888999999999999999999996664

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PRK05967 cystathionine beta-lyase; Provisional

Probab=93.22  E-value=0.42  Score=39.78  Aligned_cols=43  Identities=9%  Similarity=0.033  Sum_probs=34.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .+..++++|...+.    .....-++++.++|+++|+++|+|+++..
T Consensus       148 ~~TklV~lesPsNP----~l~v~dl~~I~~la~~~g~~vvVD~t~a~  190 (395)
T PRK05967        148 PNTKVVHTEAPGSN----TFEMQDIPAIAEAAHRHGAIVMMDNTWAT  190 (395)
T ss_pred             cCceEEEEECCCCC----CCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence            46778999955442    34566699999999999999999999864

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=93.20  E-value=0.51  Score=40.10  Aligned_cols=50  Identities=16%  Similarity=0.042  Sum_probs=38.2

Q ss_pred             CceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++- -+++ -| ...+.+-++++.++|++|++.+|.||+...+-..+
T Consensus       198 ~~~k~l~l~-nP~NPTG-~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~  248 (496)
T PLN02376        198 KKVKGLILT-NPSNPLG-TMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAG  248 (496)
T ss_pred             CCeeEEEEc-CCCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCC
Confidence            467666664 3444 34 46678899999999999999999999999874344

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=93.18  E-value=0.34  Score=40.02  Aligned_cols=42  Identities=14%  Similarity=0.237  Sum_probs=31.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++..++++|-...-.|...+    ++++.++|+++|+++|+||.+.
T Consensus       137 ~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~  178 (388)
T PRK08861        137 KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFL  178 (388)
T ss_pred             cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcc
Confidence            46778888844333444443    5689999999999999999986

>PRK09028 cystathionine beta-lyase; Provisional

Probab=93.16  E-value=0.32  Score=40.40  Aligned_cols=42  Identities=14%  Similarity=0.023  Sum_probs=33.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+...+++|......    ....-++++.++|+++|+++|+||+++
T Consensus       145 ~~TklV~lespsNPt----g~v~dl~~I~~la~~~g~~lvvD~t~a  186 (394)
T PRK09028        145 PNTKVLFLESPGSIT----MEVQDVPTLSRIAHEHDIVVMLDNTWA  186 (394)
T ss_pred             cCceEEEEECCCCCC----CcHHHHHHHHHHHHHcCCEEEEECCcc
Confidence            467788888755432    334568999999999999999999996

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=93.12  E-value=0.2  Score=42.92  Aligned_cols=58  Identities=9%  Similarity=-0.070  Sum_probs=40.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.+.++  ++   .+++.+.++-.....|-.+.|...+++++++|++||+.+|.|=-+.
T Consensus       164 d~Le~~I~~~--~~---~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra  221 (460)
T PRK13237        164 DKLQALIDEV--GA---ENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRC  221 (460)
T ss_pred             HHHHHHhccc--cC---CccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcch
Confidence            3455555543  12   4555444444334444478888999999999999999999997665

>PRK06348 aspartate aminotransferase; Provisional

Probab=93.11  E-value=0.23  Score=39.96  Aligned_cols=47  Identities=19%  Similarity=0.111  Sum_probs=34.4

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++. -+.+-.-...+.+-++++.++|+++|+++|.||+...|.
T Consensus       162 ~~~~v~l~-~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~  208 (384)
T PRK06348        162 KTKAIILN-SPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFS  208 (384)
T ss_pred             CccEEEEe-CCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccce
Confidence            34445543 233322245578899999999999999999999999873

>PRK07681 aspartate aminotransferase; Provisional

Probab=93.08  E-value=0.3  Score=39.46  Aligned_cols=46  Identities=11%  Similarity=0.094  Sum_probs=35.0

Q ss_pred             ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++- | +.-.| ...+++-++++.++|++||+++|.||+...|-
T Consensus       166 ~~k~v~l~~P-~NPTG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~  212 (399)
T PRK07681        166 KAKMMILNFP-GNPVP-AMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFY  212 (399)
T ss_pred             cceEEEEeCC-CCCcC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhhe
Confidence            45566655 6 22234 45577888999999999999999999999773

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=92.92  E-value=0.25  Score=39.33  Aligned_cols=46  Identities=15%  Similarity=0.229  Sum_probs=35.0

Q ss_pred             ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++ .| +.--|. ..+.+.++++.++|+++++.+|.||+...|-
T Consensus       142 ~~k~v~l~~p-~NPTG~-~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  188 (356)
T PRK08056        142 DLDCLFLCTP-NNPTGL-LPERQLLQAIAERCKSLNIALILDEAFIDFI  188 (356)
T ss_pred             CCCEEEEeCC-cCCCCC-CCCHHHHHHHHHHHHhcCCEEEEecchhccC
Confidence            4445555 34 222454 6788999999999999999999999988774

>PRK08068 transaminase; Reviewed

Probab=92.89  E-value=0.71  Score=37.10  Aligned_cols=49  Identities=12%  Similarity=0.098  Sum_probs=35.7

Q ss_pred             ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ++.++++- |- .-.| ...+.+-++++.++|++|++++|.||+..-|...+
T Consensus       167 ~~~~v~l~~P~-NPTG-~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~  216 (389)
T PRK08068        167 KAKLMYLNYPN-NPTG-AVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDG  216 (389)
T ss_pred             cceEEEEECCC-CCCC-CcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCC
Confidence            45555554 62 2234 57778888999999999999999999987664343

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=92.89  E-value=0.35  Score=38.97  Aligned_cols=46  Identities=13%  Similarity=0.101  Sum_probs=35.3

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++.++++- -+++---...+++-++++.++|++|++++|.||+..-|
T Consensus       166 ~~k~i~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~  211 (396)
T PRK09147        166 RTQLLFVC-SPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEI  211 (396)
T ss_pred             ccEEEEEc-CCCCCcCccCCHHHHHHHHHHHHHcCeEEEeecccccc
Confidence            45566653 44543234667899999999999999999999999876

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=92.77  E-value=0.26  Score=40.62  Aligned_cols=43  Identities=12%  Similarity=0.112  Sum_probs=32.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++.++++|-...-.|...+    ++++.++|+++|+++|.|+.+..
T Consensus       148 ~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a~  190 (398)
T PRK08249        148 KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFAT  190 (398)
T ss_pred             CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcCc
Confidence            45678888754443454443    78899999999999999999873

>PRK07683 aminotransferase A; Validated

Probab=92.74  E-value=0.68  Score=37.33  Aligned_cols=31  Identities=10%  Similarity=0.202  Sum_probs=27.7

Q ss_pred             ccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          57 IIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ...+.+-++++.++|+++|+++|.||+...+
T Consensus       176 ~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~  206 (387)
T PRK07683        176 VTLSKEELQDIADVLKDKNIFVLSDEIYSEL  206 (387)
T ss_pred             cCCCHHHHHHHHHHHHHcCeEEEEecccccc
Confidence            4567788999999999999999999999877

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=92.62  E-value=0.59  Score=37.74  Aligned_cols=48  Identities=19%  Similarity=0.116  Sum_probs=35.5

Q ss_pred             eEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          42 PCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        42 iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ..++++. .+.+ .| ...+.+-++++.++|+++|+++|.||+...|-..+
T Consensus       169 ~~~v~~~-~p~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~  217 (401)
T TIGR01264       169 TAALIVN-NPSNPCG-SVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSG  217 (401)
T ss_pred             ceEEEEc-CCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCC
Confidence            3445542 2233 34 35678889999999999999999999999885454

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=92.58  E-value=0.26  Score=40.47  Aligned_cols=42  Identities=12%  Similarity=0.133  Sum_probs=32.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|-...-.|...+    ++++.++|+++|+++|+||.+.
T Consensus       143 ~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a  184 (391)
T TIGR01328       143 DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFA  184 (391)
T ss_pred             cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence            46778888865443443332    7899999999999999999985

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=92.57  E-value=0.5  Score=39.70  Aligned_cols=50  Identities=14%  Similarity=0.014  Sum_probs=37.1

Q ss_pred             CceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++- |- .--| ...+.+.++++.++|++|++.+|.||+...+-..+
T Consensus       190 ~~~k~v~l~nP~-NPTG-~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~  240 (468)
T PLN02450        190 LKVKGVLITNPS-NPLG-TTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDS  240 (468)
T ss_pred             CCeeEEEEecCC-CCCC-cccCHHHHHHHHHHHHHCCcEEEEEccccccccCC
Confidence            366666655 42 1123 46788899999999999999999999998763333

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=92.56  E-value=0.4  Score=39.25  Aligned_cols=43  Identities=12%  Similarity=0.017  Sum_probs=32.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++.++++|-...-.|.    ..-++++.++|+++|+++|+||.+..
T Consensus       145 ~~tklV~ie~p~NPtg~----~~dl~~I~~la~~~gi~lIvD~a~a~  187 (388)
T PRK07811        145 PRTKLIWVETPTNPLLS----ITDIAALAELAHDAGAKVVVDNTFAS  187 (388)
T ss_pred             cCCeEEEEECCCCCcce----ecCHHHHHHHHHHcCCEEEEECCCCc
Confidence            46778888854332232    24588999999999999999999763

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=92.54  E-value=0.52  Score=38.91  Aligned_cols=53  Identities=15%  Similarity=0.066  Sum_probs=34.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +.+++.++++        +..++++ ++.-|       -..=++++.++|++||+++|+|+.++ +|-.+
T Consensus       158 ~~le~~l~~~--------~~klVi~~~~~~g-------~~~dl~~l~~la~~~g~~livD~Aha-~G~~~  211 (416)
T PRK13034        158 DEVEELAKEH--------KPKLIIAGFSAYP-------RELDFARFREIADEVGALLMVDMAHI-AGLVA  211 (416)
T ss_pred             HHHHHHHhhc--------CCeEEEECCCccc-------cccCHHHHHHHHHHcCCEEEEeCccc-ccCcc
Confidence            3456666542        3356677 44432       22246688889999999999999876 44443

>KOG1359|consensus

Probab=92.53  E-value=0.13  Score=42.67  Aligned_cols=68  Identities=25%  Similarity=0.297  Sum_probs=46.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc-ccc-cccCccchhhhhcCCCCCcCEE--Eeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ-VGF-GRVGTHWWAFQLQGDDIIPDIV--TVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGf-gRtG~~~~~~~~~g~~v~PDiv--t~gK  113 (114)
                      .+.--++.|.+-+-.|-+.|    ++++.+|+++||.|+.+||.. ||| |.||.  .--|.+|..-.+|++  |+||
T Consensus       192 ~r~klv~TDg~FSMDGdiaP----l~ei~~La~kYgaLlfiDecHaTgf~G~tGr--Gt~E~~~vm~~vdiinsTLgK  263 (417)
T KOG1359|consen  192 MRLKLVVTDGVFSMDGDIAP----LEEISQLAKKYGALLFIDECHATGFFGETGR--GTAEEFGVMGDVDIINSTLGK  263 (417)
T ss_pred             heEEEEEecceeccCCCccc----HHHHHHHHHhcCcEEEEeecccceeecCCCC--ChHHHhCCCCcceehhhhhhh
Confidence            46666677766553333333    678999999999999999986 555 88886  445667722356665  3455

>PRK06460 hypothetical protein; Provisional

Probab=92.46  E-value=0.32  Score=39.68  Aligned_cols=43  Identities=14%  Similarity=0.130  Sum_probs=32.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++..+++|....-.|...+.    +++.++|+++|+++|+||++..
T Consensus       129 ~~tklV~l~sp~NPtG~v~d~----~~I~~la~~~g~~vivDea~~~  171 (376)
T PRK06460        129 KRYDVVFVENITNPLLRVVDI----TELSKVCKENGSILIVDATFST  171 (376)
T ss_pred             CCceEEEEECCCCCCCcccCH----HHHHHHHHHcCCEEEEECCcCc
Confidence            466788887766555654443    4789999999999999999763

>PTZ00377 alanine aminotransferase; Provisional

Probab=92.43  E-value=0.53  Score=39.38  Aligned_cols=46  Identities=24%  Similarity=0.195  Sum_probs=34.8

Q ss_pred             ceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCA-FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.+ ++.-| +.-.| ...+.+-+++|.++|++|++++|.||+..-+.
T Consensus       218 ~~k~l~l~~P-~NPTG-~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~  264 (481)
T PTZ00377        218 TPRALVVINP-GNPTG-QVLTRDVMEEIIKFCYEKGIVLMADEVYQENI  264 (481)
T ss_pred             CeeEEEEECC-CCCCC-cCCCHHHHHHHHHHHHHCCCEEEEehhhHhhc
Confidence            5654 45555 22234 46688899999999999999999999998763

>PRK07503 methionine gamma-lyase; Provisional

Probab=92.41  E-value=0.26  Score=40.60  Aligned_cols=43  Identities=14%  Similarity=0.124  Sum_probs=32.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++.++++|....-.|... +   ++++.++|+++|+++|.|+.+..
T Consensus       149 ~~tklV~le~p~NPtG~~~-d---i~~I~~la~~~gi~lIvD~a~a~  191 (403)
T PRK07503        149 DKTRMVYFETPANPNMRLV-D---IAAVAEIAHGAGAKVVVDNTYCT  191 (403)
T ss_pred             ccCcEEEEeCCCCCCCeee-C---HHHHHHHHHHcCCEEEEECCCcc
Confidence            4667888875444345433 2   78999999999999999999863

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=92.40  E-value=1.1  Score=35.72  Aligned_cols=48  Identities=8%  Similarity=0.088  Sum_probs=35.1

Q ss_pred             eEEE-EEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          42 PCAF-FAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        42 iAAv-iiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +.++ +.-| +.-.| ...+.+-++++.++|++|++.+|.||+...|-..+
T Consensus       142 ~~~v~~~~P-~NPtG-~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~  190 (354)
T PRK06358        142 IDLVFLCNP-NNPTG-QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEEN  190 (354)
T ss_pred             CCEEEEeCC-CCCCC-CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCc
Confidence            4444 5556 22234 45678889999999999999999999998875433

>PRK07050 cystathionine beta-lyase; Provisional

Probab=92.36  E-value=0.58  Score=38.50  Aligned_cols=42  Identities=17%  Similarity=0.097  Sum_probs=32.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|-...    ...+..-++++.++|+++|+++|+||.++
T Consensus       149 ~~tklV~le~p~N----p~~~~~di~~I~~ia~~~gi~livD~a~a  190 (394)
T PRK07050        149 PNTRLIWLEAPGS----VTMEVPDVPAITAAARARGVVTAIDNTYS  190 (394)
T ss_pred             CCCeEEEEECCCC----CCccHhhHHHHHHHHHHcCCEEEEECCcc
Confidence            4567788884432    22466779999999999999999999975

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=92.34  E-value=0.48  Score=38.02  Aligned_cols=47  Identities=15%  Similarity=0.079  Sum_probs=35.5

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +..++++-+-+.-.|. ..+.+-++++.++|++||+++|.||+..-|-
T Consensus       165 ~~k~i~l~~p~NPTG~-~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~  211 (388)
T PRK07366        165 QARLMVLSYPHNPTTA-IAPLSFFQEAVAFCQQHDLVLVHDFPYVDLV  211 (388)
T ss_pred             cceEEEEeCCCCCCCc-cCCHHHHHHHHHHHHHcCeEEEEecchhhcc
Confidence            4455666553332454 5678889999999999999999999998774

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=92.27  E-value=0.37  Score=39.00  Aligned_cols=22  Identities=5%  Similarity=0.028  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhCCeEEEccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++++.++|++||+++|.|+.|.
T Consensus       168 ~~~i~~~a~~~gi~vivD~a~~  189 (363)
T TIGR01437       168 VEDAAQVAQEHNLPLIVDAAAE  189 (363)
T ss_pred             HHHHHHHHHHcCCeEEEECCCC
Confidence            4689999999999999999996

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=92.24  E-value=0.31  Score=38.93  Aligned_cols=47  Identities=11%  Similarity=0.222  Sum_probs=36.1

Q ss_pred             CceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .++.++++- | +.-.| ...+.+-++++.++|++||+.+|.||+...+.
T Consensus       163 ~~~~~v~i~~P-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~  210 (383)
T TIGR03540       163 KKAKLMFINYP-NNPTG-AVAPLKFFKELVEFAKEYNIIVCHDNAYSEIT  210 (383)
T ss_pred             ccceEEEEeCC-CCCcC-ccCCHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence            355666666 5 22234 56688999999999999999999999998663

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=92.24  E-value=0.36  Score=38.62  Aligned_cols=48  Identities=10%  Similarity=0.124  Sum_probs=35.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .++.++++..-+.-.|. ..+.+-++++.++|++||+.+|.||+...|-
T Consensus       165 ~~~~~v~l~~p~NPtG~-~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~  212 (385)
T PRK09276        165 KKAKLMFINYPNNPTGA-VADLEFFEEVVDFAKKYDIIVCHDAAYSEIA  212 (385)
T ss_pred             ccceEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEecchhhee
Confidence            35556666622333454 5678888999999999999999999998773

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=92.04  E-value=0.61  Score=37.43  Aligned_cols=41  Identities=15%  Similarity=0.070  Sum_probs=29.2

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +...++++-..+..|...+    ++++.++|+++|+++|+||.+.
T Consensus       146 ~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDea~~  186 (370)
T TIGR02539       146 PPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNCAYT  186 (370)
T ss_pred             CcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEECccc
Confidence            4556666533333454333    6688899999999999999987

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=92.03  E-value=0.34  Score=39.56  Aligned_cols=41  Identities=17%  Similarity=0.034  Sum_probs=28.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHH--HHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKH--VRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~l--c~~~gillI~DEV~t   85 (114)
                      ++.++++--.....|...+    ++++.++  |+++|+++|+|++++
T Consensus       137 ~~k~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~g~~~vvD~v~s  179 (401)
T PLN02409        137 KIKAVCVVHNETSTGVTND----LAGVRKLLDCAQHPALLLVDGVSS  179 (401)
T ss_pred             CccEEEEEeecccccccCC----HHHHHHHHhhhccCcEEEEEcccc
Confidence            4556666444444566654    5556666  999999999999987

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=91.98  E-value=0.39  Score=38.19  Aligned_cols=51  Identities=24%  Similarity=0.310  Sum_probs=37.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++...+.-.| ...+.+-++++.++|+++|+++|.||+...|.-.+
T Consensus       147 ~~~~~v~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~  197 (364)
T PRK07865        147 QRPALIWLNSPSNPTG-RVLGVDHLRKVVAWARERGAVVASDECYLELGWDA  197 (364)
T ss_pred             ccceEEEEcCCCCCCC-ccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCC
Confidence            4567777774333234 44566888999999999999999999998774433

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=91.89  E-value=0.36  Score=39.20  Aligned_cols=46  Identities=11%  Similarity=0.131  Sum_probs=34.9

Q ss_pred             ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++ +-+.+ .| ...+.+-++++.++|++|++++|.||+...|-
T Consensus       176 ~~k~i~l-~nP~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~  222 (409)
T PRK07590        176 KVDIIYL-CFPNNPTG-TVLTKEQLKAWVDYAKENGSLILFDAAYEAFI  222 (409)
T ss_pred             CceEEEE-eCCCCCcC-CcCCHHHHHHHHHHHHHcCeEEEEEccchhhc
Confidence            4555655 23344 34 46678889999999999999999999998773

>PRK09148 aminotransferase; Validated

Probab=91.87  E-value=0.57  Score=38.12  Aligned_cols=46  Identities=9%  Similarity=0.141  Sum_probs=34.0

Q ss_pred             ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +..++++. |- .-.| ...+.+-++++.++|++||+++|.||+...|.
T Consensus       165 ~~~~v~l~~P~-NPtG-~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~  211 (405)
T PRK09148        165 KPIALIVNYPS-NPTA-YVADLDFYKDVVAFAKKHDIIILSDLAYSEIY  211 (405)
T ss_pred             cceEEEEeCCC-CCCC-cCCCHHHHHHHHHHHHHcCeEEEEeccchhhh
Confidence            44444444 42 2234 55678899999999999999999999998763

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=91.85  E-value=0.25  Score=39.72  Aligned_cols=22  Identities=9%  Similarity=0.184  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHhCCeEEEccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++++.++|++||+++|.|+.|+
T Consensus       137 ~~~i~~l~~~~~~~lI~D~a~a  158 (380)
T TIGR03588       137 MQAIAALAKKHGLKIIEDASHA  158 (380)
T ss_pred             HHHHHHHHHHcCCEEEEECCCc
Confidence            7999999999999999999998

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK06290 aspartate aminotransferase; Provisional

Probab=91.85  E-value=0.53  Score=38.69  Aligned_cols=46  Identities=9%  Similarity=0.143  Sum_probs=35.8

Q ss_pred             CceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .++.++++. |  ++---...+.+-++.+.++|++||+++|.||+...+
T Consensus       178 ~~~k~i~l~nP--~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~  224 (410)
T PRK06290        178 EKAKLLYLNYP--NNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAAL  224 (410)
T ss_pred             ccceEEEEECC--CCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhc
Confidence            355666666 6  332225668889999999999999999999999876

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=91.83  E-value=0.68  Score=37.41  Aligned_cols=44  Identities=9%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      +...+++++. +-.|- ..+.+-++++.++|+++|+++|+||...-
T Consensus       136 ~~~lIiitg~-s~~G~-v~~~~~L~~i~~la~~~~~~livDEAy~~  179 (346)
T TIGR03576       136 GTSLVVITGS-TMDLK-VVSEEDLKRVIKQAKSKEAIVLVDDASGA  179 (346)
T ss_pred             CceEEEEECC-CCCCc-ccCHHHHHHHHHHHHHcCCEEEEECCccc
Confidence            3456777653 21222 34577899999999999999999999863

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=91.81  E-value=0.59  Score=37.14  Aligned_cols=41  Identities=10%  Similarity=0.095  Sum_probs=29.7

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++.++++.-..+..|..    .-++++.++|+++|+++|+||.+.
T Consensus       139 ~~~lv~l~~p~n~tG~~----~~~~~i~~~~~~~~~~vivD~a~~  179 (361)
T cd06452         139 PPALALLTHVDGNYGNL----HDAKKIAKVCHEYGVPLLLNGAYT  179 (361)
T ss_pred             CceEEEEECCCCCCeee----ccHHHHHHHHHHcCCeEEEECCcc
Confidence            56666665433333432    236799999999999999999986

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PLN02509 cystathionine beta-lyase

Probab=91.75  E-value=0.59  Score=39.76  Aligned_cols=42  Identities=17%  Similarity=0.172  Sum_probs=32.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|-...-.|.    ..-++++.++|++||+++|+||.+.
T Consensus       216 ~~TklV~lesPsNPtG~----i~Dl~~I~~lAk~~g~~lIVD~A~a  257 (464)
T PLN02509        216 PQTKLVWLESPTNPRQQ----ISDIRKIAEMAHAQGALVLVDNSIM  257 (464)
T ss_pred             cCCeEEEEECCCCCCCC----HHHHHHHHHHHHHcCCEEEEECCcc
Confidence            46678888876544343    3568999999999999999999974

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=91.74  E-value=1.1  Score=38.09  Aligned_cols=56  Identities=9%  Similarity=-0.118  Sum_probs=39.2

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      -+.+++.+.+.  .+   ..+.+++..|-.+    .+-..+=++++.++|++||+.+|.|+.+..
T Consensus       191 ~e~Le~aIt~~--~~---kai~~Vv~Tp~t~----~~g~~ddL~eIa~la~k~gI~lIvDaAyg~  246 (444)
T TIGR03531       191 VEDIERAIEEI--GP---DNILCVLSTTSCF----APRSPDDIEEIAKICANYDIPHIVNNAYGL  246 (444)
T ss_pred             HHHHHHHHHhc--cC---CCEEEEEEcCCcC----CCcchhCHHHHHHHHHHcCCEEEEECcCcC
Confidence            34566666643  12   4677777666422    123456789999999999999999999974

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PRK08912 hypothetical protein; Provisional

Probab=91.72  E-value=0.38  Score=38.58  Aligned_cols=45  Identities=18%  Similarity=0.158  Sum_probs=32.6

Q ss_pred             ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++.++++. | +.-.| ...+.+-++++.++|++|++++|.||+...+
T Consensus       159 ~~~~v~l~~p-~NPtG-~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~  204 (387)
T PRK08912        159 RTKAVLLNNP-LNPAG-KVFPREELALLAEFCQRHDAVAICDEVWEHV  204 (387)
T ss_pred             cceEEEEeCC-CCCcC-cccCHHHHHHHHHHHHHCCeEEEEhhhhhhc
Confidence            44444444 4 22234 4556688899999999999999999998765

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=91.61  E-value=1.2  Score=35.47  Aligned_cols=61  Identities=18%  Similarity=0.171  Sum_probs=42.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++..+.+--+....|...|    ++++.++|+++|+++++|=+|+ +|..-   .-.+.    ..+|+++.+
T Consensus       138 ~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~~-~g~~~---id~~~----~~~D~~~~s  198 (371)
T PF00266_consen  138 PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQS-AGCVP---IDLDE----LGADFLVFS  198 (371)
T ss_dssp             TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TTT-TTTSS-----TTT----TTESEEEEE
T ss_pred             cccceEEeecccccccEEee----eceehhhhhccCCceeEechhc-ccccc---ccccc----cccceeeec
Confidence            46777777777666777665    7799999999999999998887 43332   12232    446888765

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>PRK06767 methionine gamma-lyase; Provisional

Probab=91.60  E-value=0.4  Score=39.12  Aligned_cols=42  Identities=17%  Similarity=0.209  Sum_probs=32.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++|-...-.|...+    ++++.++|+++|+++|+||.++
T Consensus       145 ~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a  186 (386)
T PRK06767        145 PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFC  186 (386)
T ss_pred             cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            45678888865444454443    6899999999999999999975

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=91.49  E-value=0.43  Score=39.10  Aligned_cols=42  Identities=17%  Similarity=0.232  Sum_probs=31.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++|-...-.|...+    ++++.++|+++|+++|+||.+.
T Consensus       135 ~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~  176 (382)
T TIGR02080       135 QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFL  176 (382)
T ss_pred             cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            45778888754443454433    5789999999999999999986

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=91.44  E-value=0.46  Score=39.03  Aligned_cols=44  Identities=20%  Similarity=0.214  Sum_probs=32.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .+..++++|....-.|...+    ++++.++|+++|+++|+||.+...
T Consensus       136 ~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~~~  179 (386)
T PRK08045        136 EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFLSP  179 (386)
T ss_pred             cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCCcc
Confidence            45677888754444454443    679999999999999999998643

>PRK08363 alanine aminotransferase; Validated

Probab=91.38  E-value=1.1  Score=36.13  Aligned_cols=45  Identities=13%  Similarity=0.081  Sum_probs=32.3

Q ss_pred             ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++.++++ .| +.-.| ...+.+-++++.++|+++|+++|.||+...+
T Consensus       166 ~~~~v~l~~p-~NPtG-~~~~~~~~~~l~~~a~~~~~~li~Deay~~~  211 (398)
T PRK08363        166 KTKAIAVINP-NNPTG-ALYEKKTLKEILDIAGEHDLPVISDEIYDLM  211 (398)
T ss_pred             ceEEEEEECC-CCCCC-cCcCHHHHHHHHHHHHHcCeEEEEhhhhhhh
Confidence            3444444 44 22234 3456788999999999999999999998765

>PRK09082 methionine aminotransferase; Validated

Probab=91.36  E-value=0.43  Score=38.37  Aligned_cols=46  Identities=13%  Similarity=0.156  Sum_probs=33.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++.++++...+.--|. ..+++-++++.++|++|++++|.||+...+
T Consensus       163 ~~~~v~l~~p~NPtG~-~~~~~~~~~i~~~a~~~~i~li~De~y~~~  208 (386)
T PRK09082        163 RTRLIILNTPHNPSGT-VWSAADMRALWQLIAGTDIYVLSDEVYEHI  208 (386)
T ss_pred             cceEEEEeCCCCCCCc-CCCHHHHHHHHHHHHHCCEEEEEehhhhhh
Confidence            4556666433333343 346788999999999999999999998765

>PRK07582 cystathionine gamma-lyase; Validated

Probab=91.30  E-value=0.69  Score=37.51  Aligned_cols=42  Identities=21%  Similarity=0.162  Sum_probs=29.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++..+++|-.....|.. .   -++++.++|+++|+++|+||.+.
T Consensus       131 ~~t~lV~le~p~NPtg~v-~---di~~I~~~a~~~g~~lvVD~t~~  172 (366)
T PRK07582        131 AGADLVLAETPSNPGLDV-C---DLAALAAAAHAAGALLVVDNTTA  172 (366)
T ss_pred             cCceEEEEECCCCCCCCc-c---CHHHHHHHHHHcCCEEEEECCCC
Confidence            356667777443333322 2   27999999999999999999974

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=91.20  E-value=0.65  Score=37.60  Aligned_cols=22  Identities=9%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHhCCeEEEccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++++.++|+++|+++|.||++.
T Consensus       182 ~~~I~~la~~~~~~livD~a~~  203 (416)
T PRK00011        182 FKRFREIADEVGAYLMVDMAHI  203 (416)
T ss_pred             HHHHHHHHHHcCCEEEEECcch
Confidence            6899999999999999999975

>PRK06107 aspartate aminotransferase; Provisional

Probab=91.17  E-value=1.2  Score=36.09  Aligned_cols=49  Identities=8%  Similarity=-0.026  Sum_probs=35.1

Q ss_pred             ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHh-CCeEEEccccccccccC
Q psy1628          41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAA-GGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfgRtG   91 (114)
                      ++.++++. |. .-.| ...+.+-++++.++|+++ ++.+|.||+...+...+
T Consensus       166 ~~~~v~l~~p~-NPtG-~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~  216 (402)
T PRK06107        166 RTRWLILNAPS-NPTG-AVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDD  216 (402)
T ss_pred             CceEEEEECCC-CCCC-cCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCC
Confidence            44445544 42 2223 677888999999999998 99999999998663333

>PRK05957 aspartate aminotransferase; Provisional

Probab=91.15  E-value=0.6  Score=37.69  Aligned_cols=47  Identities=23%  Similarity=0.219  Sum_probs=33.7

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++-..+...| ...+.+-++++.++|+++|+++|.||+...|-
T Consensus       160 ~~klv~~~~p~NPtG-~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~  206 (389)
T PRK05957        160 KTRAIVTISPNNPTG-VVYPEALLRAVNQICAEHGIYHISDEAYEYFT  206 (389)
T ss_pred             CceEEEEeCCCCCCC-cCcCHHHHHHHHHHHHHcCcEEEEeccchhcc
Confidence            454554433233334 45567789999999999999999999988763

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=91.14  E-value=0.73  Score=37.70  Aligned_cols=48  Identities=6%  Similarity=-0.130  Sum_probs=37.3

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh-CCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA-GGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tGfg   88 (114)
                      ++.++++-|-+.+---...+.+.++++.++|+++ ++++|.||+..-|.
T Consensus       211 ~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~  259 (431)
T PRK15481        211 GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLS  259 (431)
T ss_pred             CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhc
Confidence            4556677776555323566789999999999999 99999999988763

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=91.11  E-value=0.82  Score=36.12  Aligned_cols=44  Identities=18%  Similarity=0.075  Sum_probs=33.4

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ..++.-|- .--|. ..+.+-++++.++|+++|+++|.||+...+.
T Consensus       127 ~v~l~nP~-NPTG~-~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~  170 (330)
T PRK05664        127 VLVVVNPN-NPTGR-RFDPARLLAWHARLAARGGWLVVDEAFMDNT  170 (330)
T ss_pred             EEEEeCCc-CCCCC-ccCHHHHHHHHHHHHhcCCEEEEECCcccCC
Confidence            45777774 22344 5566678999999999999999999987763

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=91.05  E-value=1.2  Score=36.22  Aligned_cols=49  Identities=12%  Similarity=0.089  Sum_probs=34.9

Q ss_pred             ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ++.++++ -| +.-.| ...+.+-++++.++|+++|+++|.||+...|-..+
T Consensus       177 ~~~~i~~~~p-~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~  226 (412)
T PTZ00433        177 RTKALIMTNP-SNPCG-SNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG  226 (412)
T ss_pred             CceEEEEeCC-CCCCC-cccCHHHHHHHHHHHHHcCCeEEEeccccccccCC
Confidence            4445554 33 22235 45567788999999999999999999998874333

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=90.99  E-value=0.73  Score=36.45  Aligned_cols=69  Identities=19%  Similarity=0.180  Sum_probs=37.0

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEE---Eeec
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV---TVVW  113 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDiv---t~gK  113 (114)
                      +..++++.-.+.-.|... +.+-+.++.+.|+ +|+++|.||+...+...+....+....+  ..++++   +++|
T Consensus       154 ~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK  225 (367)
T PRK02731        154 RTRLVFIANPNNPTGTYL-PAEEVERFLAGVP-PDVLVVLDEAYAEYVRRKDYEDGLELVA--KFPNVVVTRTFSK  225 (367)
T ss_pred             CCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCC-CCcEEEEECcHHHhccCcCcccHHHHHh--hcCCEEEEeeehH
Confidence            445555543333345444 4444555555553 5999999999887754332111223333  345666   4455

>PLN02368 alanine transaminase

Probab=90.92  E-value=0.56  Score=38.84  Aligned_cols=46  Identities=22%  Similarity=0.043  Sum_probs=35.3

Q ss_pred             ceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCA-FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.+ ++.-|- .-.| ...+.+-++++.++|++|++.+|.||+..-+-
T Consensus       210 ~~k~l~l~nP~-NPTG-~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~  256 (407)
T PLN02368        210 TVRAMVIINPG-NPTG-QCLSEANLREILKFCYQERLVLLGDEVYQQNI  256 (407)
T ss_pred             CeEEEEEECCC-CCCC-ccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence            4554 455672 2234 46688999999999999999999999998774

>KOG0257|consensus

Probab=90.84  E-value=0.36  Score=41.02  Aligned_cols=35  Identities=17%  Similarity=0.141  Sum_probs=29.9

Q ss_pred             ccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      -..+.+-|+.|.++|++||.++|.|||..-+--.|
T Consensus       187 kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~  221 (420)
T KOG0257|consen  187 KVFSREELERIAELCKKHGLLVISDEVYEWLVYDG  221 (420)
T ss_pred             cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCC
Confidence            56788999999999999999999999987654444

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=90.82  E-value=0.55  Score=37.02  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=29.2

Q ss_pred             ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +..++++ .| ....|...+..    ++.++|+++|+++|.||++.+|.
T Consensus       158 ~~~~v~~~~p-~nptG~~~~~~----~l~~l~~~~~~~li~De~y~~~~  201 (361)
T PRK00950        158 KTKVIFLCTP-NNPTGNLIPEE----DIRKILESTDALVFVDEAYVEFA  201 (361)
T ss_pred             CCCEEEEeCC-CCCCCCCcCHH----HHHHHHHHCCcEEEEECchhhhC
Confidence            3444444 45 33345554443    57778899999999999999884

>PRK12414 putative aminotransferase; Provisional

Probab=90.70  E-value=0.62  Score=37.54  Aligned_cols=46  Identities=15%  Similarity=0.090  Sum_probs=34.0

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++.++++..-+.-.|. ..+++-++++.++|++||+++|.||+..-|
T Consensus       162 ~~~~v~i~~p~NPTG~-~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~  207 (384)
T PRK12414        162 RTRMIIVNTPHNPSAT-VFSAADLARLAQLTRNTDIVILSDEVYEHV  207 (384)
T ss_pred             ccEEEEEcCCCCCCCc-CCCHHHHHHHHHHHHHCCeEEEEhhhhhhc
Confidence            5556666432333454 446778999999999999999999998765

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=90.66  E-value=0.81  Score=36.72  Aligned_cols=50  Identities=14%  Similarity=0.083  Sum_probs=32.4

Q ss_pred             CceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      +++.++++ +.+.+ .|. ..+.+-++++.++|++ ++++|.||+...|...|.
T Consensus       154 ~~~~~i~l-~~P~NPtG~-~~~~~~l~~l~~~~~~-~~~lI~DE~y~~~~~~~~  204 (369)
T PRK08153        154 ENAPLVYL-ANPDNPMGS-WHPAADIVAFIEALPE-TTLLVLDEAYCETAPAGA  204 (369)
T ss_pred             cCCcEEEE-eCCCCCCCC-CCCHHHHHHHHHhCCC-CcEEEEeCchhhhcCccc
Confidence            34555555 33333 354 4455666777777774 999999999998865553

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=90.48  E-value=0.64  Score=37.60  Aligned_cols=41  Identities=15%  Similarity=0.133  Sum_probs=32.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ   84 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~   84 (114)
                      .++.++++|....-    ..+..-++++.++|+++|+++|.||+.
T Consensus       135 ~~tklv~le~P~NP----~~~~~dl~~I~~la~~~g~~lIvD~t~  175 (366)
T PRK08247        135 PNTKAIFIETPTNP----LMQETDIAAIAKIAKKHGLLLIVDNTF  175 (366)
T ss_pred             cCceEEEEECCCCC----CCcHHHHHHHHHHHHHcCCEEEEECCC
Confidence            46678888754321    345677999999999999999999997

>PRK07671 cystathionine beta-lyase; Provisional

Probab=90.40  E-value=0.65  Score=37.93  Aligned_cols=42  Identities=12%  Similarity=0.135  Sum_probs=31.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++|--..-.|..    .-++++.++|+++|+++|+||.+.
T Consensus       133 ~~tklV~le~P~NPtg~~----~dl~~I~~la~~~g~~lvvD~a~~  174 (377)
T PRK07671        133 PNTKAIYVETPTNPLLKI----TDIKKISTIAKEKGLLTIVDNTFM  174 (377)
T ss_pred             CCCeEEEEECCCCCCCcc----cCHHHHHHHHHHcCCEEEEECCCC
Confidence            467788887543323322    238899999999999999999975

>PRK08637 hypothetical protein; Provisional

Probab=90.31  E-value=1  Score=36.36  Aligned_cols=50  Identities=10%  Similarity=0.082  Sum_probs=36.0

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCeEEEccccccccccC
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRA-----AGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~-----~gillI~DEV~tGfgRtG   91 (114)
                      ...+++=|-+.+---...+++-++++.++|++     |++++|.||+...|-..+
T Consensus       146 ~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~  200 (388)
T PRK08637        146 GKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYED  200 (388)
T ss_pred             CCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCC
Confidence            34445555545433367788889999998875     999999999998884444

>PRK09265 aminotransferase AlaT; Validated

Probab=90.26  E-value=0.7  Score=37.40  Aligned_cols=46  Identities=17%  Similarity=0.141  Sum_probs=33.7

Q ss_pred             ceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCA-FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.+ ++.-| ..-.| ...+.+-++++.++|+++|+++|.||+...|-
T Consensus       168 ~~~~v~l~~P-~NPtG-~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~  214 (404)
T PRK09265        168 RTKAIVIINP-NNPTG-AVYSKELLEEIVEIARQHNLIIFADEIYDKIL  214 (404)
T ss_pred             cceEEEEECC-CCCCC-cCCCHHHHHHHHHHHHHCCCEEEEehhhhhcc
Confidence            4444 44445 32234 35567888999999999999999999998774

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=90.26  E-value=1.4  Score=34.72  Aligned_cols=32  Identities=19%  Similarity=0.238  Sum_probs=28.2

Q ss_pred             ccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ...+.+-++++.++|+++++++|.||+-.-|.
T Consensus       137 ~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~  168 (332)
T PRK06425        137 NLISRDSLLTISEICRKKGALLFIDEAFIDFV  168 (332)
T ss_pred             CccCHHHHHHHHHHHHHcCCEEEEecchhccc
Confidence            35678889999999999999999999988774

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=90.25  E-value=0.67  Score=37.57  Aligned_cols=46  Identities=13%  Similarity=0.117  Sum_probs=35.3

Q ss_pred             ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++- -+.+ .| ...+.+-++++.++|++|++++|.||+..-|-
T Consensus       173 ~~~~i~l~-nP~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~  219 (402)
T TIGR03542       173 KIDIIYLC-SPNNPTG-TVLTKEQLKELVDYANEHGSLILFDAAYSAFI  219 (402)
T ss_pred             CceEEEEe-CCCCCCC-ccCCHHHHHHHHHHHHHcCeEEEEEchhhhhc
Confidence            45566653 3333 34 46777889999999999999999999998874

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=90.20  E-value=1.4  Score=36.96  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhcCCCCCCCCce-EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628          22 HLFFERIFLSASLYPFLFLYP-CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~i-AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      -+.+++.++++       .++ +..++....+ .|+..|    ++++.++|++||.++|+|=|-+ +|  |. .+-.+.|
T Consensus       119 p~~v~~~L~~~-------~~~~~V~~vH~ETS-TGvlnp----l~~I~~~~k~~g~l~iVDaVsS-~G--g~-~~~vd~w  182 (383)
T COG0075         119 PEEVEEALDKD-------PDIKAVAVVHNETS-TGVLNP----LKEIAKAAKEHGALLIVDAVSS-LG--GE-PLKVDEW  182 (383)
T ss_pred             HHHHHHHHhcC-------CCccEEEEEeccCc-ccccCc----HHHHHHHHHHcCCEEEEEeccc-CC--Cc-ccchhhc
Confidence            35677777754       355 3334443333 354443    5789999999999999998877 43  22 3445566


Q ss_pred             CCCCCcCEEEe
Q psy1628         101 GDDIIPDIVTV  111 (114)
Q Consensus       101 g~~v~PDivt~  111 (114)
                      |  +  |+++-
T Consensus       183 g--i--Dv~it  189 (383)
T COG0075         183 G--I--DVAIT  189 (383)
T ss_pred             C--c--cEEEe
Confidence            6  3  55554

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=90.05  E-value=0.91  Score=37.00  Aligned_cols=41  Identities=15%  Similarity=0.025  Sum_probs=30.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ   84 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~   84 (114)
                      .+..++++|-...-.|...    -++++.++|+++|+++|+||..
T Consensus       135 ~~TklV~lesP~NPtg~~~----di~~I~~la~~~gi~vvvD~t~  175 (364)
T PRK07269        135 EDTDIVYIETPTNPLMVEF----DIEKVAKLAHAKGAKVIVDNTF  175 (364)
T ss_pred             cCceEEEEECCCCCCCeee----CHHHHHHHHHHcCCEEEEECCC
Confidence            3566777776544333222    5889999999999999999984

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=89.94  E-value=0.72  Score=38.17  Aligned_cols=43  Identities=21%  Similarity=0.169  Sum_probs=31.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .+...+++|-...-.|.. .   =++++.++|+++|+++|+||++..
T Consensus       144 ~~tklV~l~~P~NPtG~v-~---dl~~I~~la~~~gi~vIvD~a~a~  186 (405)
T PRK08776        144 QSPKLVLIETPSNPLLRI-T---DLRFVIEAAHKVGALTVVDNTFLS  186 (405)
T ss_pred             cCCeEEEEECCCCCCCcc-C---CHHHHHHHHHHcCCEEEEECCCcc
Confidence            356677777544334443 2   278999999999999999999863

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=89.93  E-value=0.4  Score=38.89  Aligned_cols=24  Identities=17%  Similarity=0.149  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHhCCeEEEccccc-cc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQV-GF   87 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~t-Gf   87 (114)
                      ++++.++|+++|+++|.|+.++ |.
T Consensus       137 ~~~i~~~a~~~gi~vi~D~a~a~g~  161 (379)
T PRK11658        137 LDAIRAIGERYGIPVIEDAAHAVGT  161 (379)
T ss_pred             HHHHHHHHHHcCCeEEEECCCccCC
Confidence            5789999999999999999998 44

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=89.92  E-value=0.67  Score=37.33  Aligned_cols=46  Identities=13%  Similarity=0.089  Sum_probs=34.8

Q ss_pred             ceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++- -+.+ .| ...+.+-++++.++|++|++++|.||+..-+.
T Consensus       165 ~~k~i~l~-~p~NPtG-~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~  211 (393)
T TIGR03538       165 RCQLLFVC-SPGNPTG-AVLSLDTLKKLIELADQYGFIIASDECYSELY  211 (393)
T ss_pred             cceEEEEe-CCCCCcC-cccCHHHHHHHHHHHHHCCEEEEECcchhhcc
Confidence            45565553 3344 34 46678899999999999999999999998763

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=89.85  E-value=1  Score=36.10  Aligned_cols=24  Identities=13%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHhCCeEEEcccc-ccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQ-VGF   87 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~-tGf   87 (114)
                      ++++.++|+++|+++|.||++ .|+
T Consensus       178 ~~~I~~l~~~~~~~li~D~a~~~g~  202 (402)
T cd00378         178 FKRFREIADEVGAYLLVDMAHVAGL  202 (402)
T ss_pred             HHHHHHHHHhcCCEEEEEccchhhh
Confidence            788999999999999999996 444

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK06234 methionine gamma-lyase; Provisional

Probab=89.76  E-value=0.71  Score=37.94  Aligned_cols=42  Identities=5%  Similarity=0.041  Sum_probs=31.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA--GGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~--gillI~DEV~t   85 (114)
                      .+..++++|-...-.|...+    ++++.++|+++  |+++|+||...
T Consensus       148 ~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea~~  191 (400)
T PRK06234        148 ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNTFC  191 (400)
T ss_pred             cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECCCC
Confidence            35678888865443454333    89999999997  99999999976

>PRK05942 aspartate aminotransferase; Provisional

Probab=89.62  E-value=0.85  Score=36.78  Aligned_cols=46  Identities=11%  Similarity=0.132  Sum_probs=35.2

Q ss_pred             ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ++.++++- | +.-.| ...+.+-++++.++|+++|+.+|.||+..-|-
T Consensus       170 ~~k~i~l~~P-~NPtG-~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~  216 (394)
T PRK05942        170 QAKILYFNYP-SNPTT-ATAPREFFEEIVAFARKYEIMLVHDLCYAELA  216 (394)
T ss_pred             cceEEEEcCC-CCCCC-CcCCHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence            55566665 5 33234 56778889999999999999999999987653

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=89.59  E-value=0.83  Score=38.86  Aligned_cols=57  Identities=12%  Similarity=0.020  Sum_probs=44.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ   84 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~   84 (114)
                      .-+|+++++.  ++   ++|.-++..-.-.+.|-.|.+-.=+++++++|++|++.+++|-..
T Consensus       172 ~kLe~lidev--G~---~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~R  228 (471)
T COG3033         172 EKLERLIDEV--GA---DNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAAR  228 (471)
T ss_pred             HHHHHHHHHh--Cc---ccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhh
Confidence            3577888875  45   677666655544556779999999999999999999999999654

>PRK03321 putative aminotransferase; Provisional

Probab=89.45  E-value=1.8  Score=34.02  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=35.0

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV  111 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~  111 (114)
                      +..++++...+.-.|...+ .+   .+.++|++  +++++|.||+...|...+....+.+...  -.++++++
T Consensus       145 ~~~~v~l~~p~NPtG~~~~-~~---~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~vi~~  211 (352)
T PRK03321        145 RTRLIFVCNPNNPTGTVVT-PA---ELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVR--DHPNVVVL  211 (352)
T ss_pred             CCCEEEEeCCCCCcCCCcC-HH---HHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHh--hCCCEEEE
Confidence            4445555433333465554 33   44444444  6999999999988855442111222222  34677743

>PRK08064 cystathionine beta-lyase; Provisional

Probab=89.42  E-value=0.86  Score=37.33  Aligned_cols=43  Identities=19%  Similarity=0.191  Sum_probs=32.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .+..++++|-...-.|... +   ++++.++|+++|+++|+||.+..
T Consensus       137 ~~tklV~l~~p~NptG~~~-d---l~~I~~la~~~g~~vvvD~a~~~  179 (390)
T PRK08064        137 PNTKLFYVETPSNPLLKVT-D---IRGVVKLAKAIGCLTFVDNTFLT  179 (390)
T ss_pred             CCceEEEEECCCCCCcEec-c---HHHHHHHHHHcCCEEEEECCCCc
Confidence            4677888885544345443 2   67899999999999999999754

>PRK05839 hypothetical protein; Provisional

Probab=89.39  E-value=0.79  Score=36.85  Aligned_cols=45  Identities=13%  Similarity=-0.074  Sum_probs=33.4

Q ss_pred             eEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          42 PCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        42 iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +.++++ +-+.+ .| ...+.+.++++.++|+++|+.+|.||+..-|.
T Consensus       156 ~k~v~i-~nP~NPTG-~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~  201 (374)
T PRK05839        156 VDLVIL-NSPNNPTG-RTLSLEELIEWVKLALKHDFILINDECYSEIY  201 (374)
T ss_pred             ccEEEE-eCCCCCcC-cccCHHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence            444444 23343 34 35578889999999999999999999988773

>PRK08354 putative aminotransferase; Provisional

Probab=89.25  E-value=0.89  Score=35.55  Aligned_cols=44  Identities=18%  Similarity=0.263  Sum_probs=34.6

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ..++.-|- .--| ...+.+-++++.++|+++|+.+|.||+...|.
T Consensus       120 ~vi~~~P~-NPTG-~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~  163 (311)
T PRK08354        120 VVFFCNPN-NPDG-KFYNFKELKPLLDAVEDRNALLILDEAFIDFV  163 (311)
T ss_pred             EEEEecCC-CCCC-CccCHHHHHHHHHHhhhcCcEEEEeCcchhcc
Confidence            45666773 2234 46777889999999999999999999998884

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=89.24  E-value=0.7  Score=37.72  Aligned_cols=22  Identities=9%  Similarity=0.066  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHhCCeEEEccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++++.++|++||+++|.|+.++
T Consensus       135 ~~~I~~la~~~~i~vIeDaa~~  156 (376)
T TIGR02379       135 MDTIMALANKHQLFVIEDAAQG  156 (376)
T ss_pred             HHHHHHHHHHCCCEEEEECccc
Confidence            5699999999999999999987

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PLN02672 methionine S-methyltransferase

Probab=88.79  E-value=1.3  Score=41.63  Aligned_cols=49  Identities=12%  Similarity=0.196  Sum_probs=38.3

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .+.++.-|-+.-.| ...+.+-++++.++|++||+++|.||+..++-..+
T Consensus       830 ~~I~L~nPnhNPTG-~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~  878 (1082)
T PLN02672        830 PWVYISGPTINPTG-LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDT  878 (1082)
T ss_pred             CEEEEECcCCCCcC-ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCC
Confidence            35677778533235 46688899999999999999999999998775444

>PRK08114 cystathionine beta-lyase; Provisional

Probab=88.58  E-value=2  Score=35.89  Aligned_cols=60  Identities=20%  Similarity=0.168  Sum_probs=41.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG--GVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g--illI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+...+.+|...+-.|.+.+    ++++.++|+++|  +++|+|..++    +|. .  ++-..  .-.|+++.+
T Consensus       146 ~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT~a----~p~-~--~~pl~--~GaDivv~S  207 (395)
T PRK08114        146 PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNTWA----AGV-L--FKALD--FGIDISIQA  207 (395)
T ss_pred             CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECCCc----ccc-c--cCHHH--cCCcEEEEc
Confidence            46788999976654444443    789999999985  9999999986    343 2  33332  346887754

>PRK06836 aspartate aminotransferase; Provisional

Probab=88.13  E-value=1.3  Score=35.76  Aligned_cols=49  Identities=10%  Similarity=-0.029  Sum_probs=35.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCeEEEccccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA------AGGVCVADEVQVGFGR   89 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~------~gillI~DEV~tGfgR   89 (114)
                      +++.++++.. +.+---...+.+-++++.++|++      ||+++|.||+...|..
T Consensus       167 ~~~~~v~~~~-p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~  221 (394)
T PRK06836        167 PKTKAVIINS-PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVY  221 (394)
T ss_pred             cCceEEEEeC-CCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccc
Confidence            3455666544 23333356677888999999999      8999999999987743

>KOG0258|consensus

Probab=88.05  E-value=1.5  Score=37.57  Aligned_cols=72  Identities=17%  Similarity=0.101  Sum_probs=51.4

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCccchhhh
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGTHWWAFQ   98 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~~~~~~~   98 (114)
                      .+.+++.+++...+-   +--+.+|+-|.--.|  ...+++=++.+...|.++|+++++|||.. -....+++|+++.
T Consensus       200 ~~el~~~~~eA~k~i---~~r~lvvINPGNPTG--qvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfK  272 (475)
T KOG0258|consen  200 VAELERSVDEARKGI---NPRALVVINPGNPTG--QVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFK  272 (475)
T ss_pred             HHHHHHHHHHHhccC---CceEEEEECCCCccc--hhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHH
Confidence            356788887764111   233778888853222  67889999999999999999999999964 3345664477665

>KOG0256|consensus

Probab=87.60  E-value=2.7  Score=36.11  Aligned_cols=47  Identities=13%  Similarity=0.060  Sum_probs=36.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .+|.++|+---+.--| ...+++-+..+.+++.++++-+|.|||.+|-
T Consensus       225 ~kVkGvlitNPsNPLG-~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s  271 (471)
T KOG0256|consen  225 LKVKGVLITNPSNPLG-TTLSPEELISLLNFASRKNIHVISDEIYAGS  271 (471)
T ss_pred             CceeEEEEeCCCCCCC-CccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence            6887777654322223 4567788999999999999999999999874

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=86.97  E-value=1.1  Score=38.75  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          64 LREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +++++++|+++|+++++|+.++ +|-.|
T Consensus       237 l~~i~eia~~~gA~L~VD~AH~-~Glig  263 (493)
T PRK13580        237 FAKLREIADEVGAVLMVDMAHF-AGLVA  263 (493)
T ss_pred             HHHHHHHHHHcCCEEEEECchh-hceec
Confidence            7899999999999999999997 54443

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=86.64  E-value=2.1  Score=36.29  Aligned_cols=40  Identities=13%  Similarity=-0.009  Sum_probs=27.0

Q ss_pred             CceEEEEEcccCCC--CCc-ccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628          40 LYPCAFFAESLQSC--GGQ-IIPPANYLREVYKHVRAAGGVCVADE   82 (114)
Q Consensus        40 ~~iAAviiEPv~g~--gG~-~~~~~~fl~~lr~lc~~~gillI~DE   82 (114)
                      .+.++++++-....  .|. ...+   ++++.++|++||+++|+|-
T Consensus       210 ~~T~lv~~~h~sN~~~~G~~~~~d---l~~I~~la~~~g~~vivD~  252 (454)
T TIGR00474       210 ENTALLLKVHTSNYRIVGFTEEVS---IAELVALGREHGLPVMEDL  252 (454)
T ss_pred             cCCEEEEEEccCcccccCCCCCCC---HHHHHHHHHHcCCeEEEEC
Confidence            46677666654321  132 1222   7889999999999999994

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>KOG1360|consensus

Probab=86.56  E-value=1.9  Score=37.22  Aligned_cols=54  Identities=24%  Similarity=0.363  Sum_probs=40.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ..+|+++++..  +   ...--+-+|.+.+-.|.+.|    +++|.+++++||++..+|||..
T Consensus       290 ~hL~~lL~~~~--~---svPKivAFEtVhSM~Gavcp----leelcDvah~yGAiTFlDEVHA  343 (570)
T KOG1360|consen  290 DHLEQLLQSSP--K---SVPKIVAFETVHSMDGAVCP----LEELCDVAHKYGAITFLDEVHA  343 (570)
T ss_pred             HHHHHHHHhCC--C---CCCceEEEeeeeccCCCcCC----HHHHHHHHHHhCceeeeehhhh
Confidence            36788887753  3   33344557888776666665    5688999999999999999987

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=86.36  E-value=2.4  Score=35.73  Aligned_cols=42  Identities=19%  Similarity=0.228  Sum_probs=30.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+++++++-- +...|..   ..-++++.++|+++|+++++|+.+.
T Consensus       207 ~~t~~V~v~~-Pn~tG~~---~~dl~eI~~~a~~~gal~iVD~a~~  248 (481)
T PRK04366        207 EDTAALMLTN-PNTLGLF---ERNILEIAEIVHEAGGLLYYDGANL  248 (481)
T ss_pred             cCCeEEEEeC-CCCcccc---chHHHHHHHHHHHcCCEEEEEecCh
Confidence            4566666632 3344543   2247899999999999999999984

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=86.27  E-value=3.6  Score=38.44  Aligned_cols=53  Identities=11%  Similarity=0.058  Sum_probs=39.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.++.+.      ++++++++.-....+|...+    ++++.++|+++|+++++|=.|+
T Consensus       654 e~L~~~i~~~~------~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDgAq~  706 (993)
T PLN02414        654 EELRKAAEAHK------DNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDGANM  706 (993)
T ss_pred             HHHHHHHhccC------CCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEecCH
Confidence            45666666542      58888888654444555433    7899999999999999999884

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=86.23  E-value=1.9  Score=34.18  Aligned_cols=48  Identities=17%  Similarity=0.181  Sum_probs=31.2

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ..++++-.-+.-.|... +.+-++++.++|++ ++++|.||+...|...+
T Consensus       155 ~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~~~~  202 (357)
T PRK14809        155 ERIVYLTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFAERP  202 (357)
T ss_pred             CcEEEEeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhccCCc
Confidence            34455543333345444 55557777778865 78999999999885443

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=86.18  E-value=1.5  Score=35.47  Aligned_cols=45  Identities=11%  Similarity=-0.052  Sum_probs=32.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++-.-+.--| ...+.+-++++.++|++|++++|.||+..
T Consensus       178 ~~~~~i~l~~P~NPTG-~~~s~~~~~~l~~~a~~~~~~iI~De~Y~  222 (416)
T PRK09440        178 EDTGAICVSRPTNPTG-NVLTDEELEKLDALARQHNIPLLIDNAYG  222 (416)
T ss_pred             CCceEEEEecCCCCCC-ccCCHHHHHHHHHHHHHcCCcEEEeCCcc
Confidence            3454444432233345 44578889999999999999999999984

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=86.16  E-value=2.3  Score=36.16  Aligned_cols=43  Identities=16%  Similarity=0.125  Sum_probs=34.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      ++.-|+.+|.+..-++ ..++   ++++.++|+++|+++|+|...+.
T Consensus       146 ~nTkavf~EtigNP~~-~v~D---ie~ia~iAh~~gvpliVDNT~at  188 (426)
T COG2873         146 ENTKAVFAETIGNPGL-DVLD---IEAIAEIAHRHGVPLIVDNTFAT  188 (426)
T ss_pred             cccceEEEEeccCCCc-cccC---HHHHHHHHHHcCCcEEEecCCCc
Confidence            6899999999855433 4444   57899999999999999988763

>PRK04311 selenocysteine synthase; Provisional

Probab=85.99  E-value=3.4  Score=35.16  Aligned_cols=40  Identities=15%  Similarity=-0.002  Sum_probs=27.7

Q ss_pred             CceEEEEEcccCCC--CCc-ccCCHHHHHHHHHHHHHhCCeEEEcc
Q psy1628          40 LYPCAFFAESLQSC--GGQ-IIPPANYLREVYKHVRAAGGVCVADE   82 (114)
Q Consensus        40 ~~iAAviiEPv~g~--gG~-~~~~~~fl~~lr~lc~~~gillI~DE   82 (114)
                      .+.++++++-....  -|. ..++   ++++.++|++||+++|.|.
T Consensus       215 ~~TklV~~vh~sN~~i~G~~~~~d---l~eI~~lak~~gi~vivD~  257 (464)
T PRK04311        215 ENTALLLKVHTSNYRIEGFTKEVS---LAELAALGKEHGLPVVYDL  257 (464)
T ss_pred             ccCeEEEEEcCCCccccccCCcCC---HHHHHHHHHHcCCeEEEEC
Confidence            45677776654321  132 2223   7899999999999999998

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=85.46  E-value=1.4  Score=35.62  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHhCCeEEEccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++++.++|+++|+.+|.|+.++
T Consensus       135 ~~~i~~la~~~~i~vIeD~a~a  156 (375)
T PRK11706        135 MDTIMALAKKHNLFVVEDAAQG  156 (375)
T ss_pred             HHHHHHHHHHcCCEEEEECccc
Confidence            5799999999999999999997

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=84.96  E-value=2.1  Score=37.11  Aligned_cols=47  Identities=13%  Similarity=0.068  Sum_probs=35.6

Q ss_pred             CceEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHh--CCeEEEcccccccc
Q psy1628          40 LYPCAFF-AESLQSCGGQIIPPANYLREVYKHVRAA--GGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAvi-iEPv~g~gG~~~~~~~fl~~lr~lc~~~--gillI~DEV~tGfg   88 (114)
                      .++.+++ .-|-  +--....+++-++++.++|++|  ++++|.||+..-|.
T Consensus       239 ~~~kai~l~nP~--NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~  288 (521)
T TIGR03801       239 PSIKALFVVNPS--NPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFV  288 (521)
T ss_pred             CCCcEEEEeCCC--CCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhc
Confidence            4565555 4663  3222577789999999999987  99999999998773

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=84.49  E-value=5.5  Score=31.98  Aligned_cols=38  Identities=16%  Similarity=0.071  Sum_probs=26.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +..|+++--..|.    +.   =+++++++|+++|+.+|-|=.|+
T Consensus       113 ~t~ai~~~h~~G~----~~---d~~~i~~~~~~~~i~lIeD~a~a  150 (363)
T PF01041_consen  113 KTKAILVVHLFGN----PA---DMDAIRAIARKHGIPLIEDAAQA  150 (363)
T ss_dssp             TEEEEEEE-GGGB----------HHHHHHHHHHTT-EEEEE-TTT
T ss_pred             CccEEEEecCCCC----cc---cHHHHHHHHHHcCCcEEEccccc
Confidence            5577777766652    22   48899999999999999998887

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>KOG2862|consensus

Probab=83.77  E-value=2.8  Score=35.08  Aligned_cols=68  Identities=21%  Similarity=0.176  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh
Q psy1628          19 AVVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ   98 (114)
Q Consensus        19 ~~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~   98 (114)
                      ++.++.+++-|++|        ++-++.+--.-++-|+.-   +.++...++|++|+.+|++|-|.+ +|  |. -|.++
T Consensus       128 ~~~le~i~~~lsqh--------~p~~vfv~hgdsSTgV~q---~~~~~~g~lc~k~~~lllVD~VaS-lg--gt-~F~mD  192 (385)
T KOG2862|consen  128 AVPLEEITEKLSQH--------KPKAVFVTHGDSSTGVLQ---DLLAISGELCHKHEALLLVDTVAS-LG--GT-EFEMD  192 (385)
T ss_pred             CccHHHHHHHHHhc--------CCceEEEEecCccccccc---hHHHHHHHHhhcCCeEEEEechhh-cC--Cc-cceeh
Confidence            56677888888876        444555544333444433   356677889999999999999987 43  33 45666


Q ss_pred             hcC
Q psy1628          99 LQG  101 (114)
Q Consensus        99 ~~g  101 (114)
                      .||
T Consensus       193 ewg  195 (385)
T KOG2862|consen  193 EWG  195 (385)
T ss_pred             hhc
Confidence            666

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=83.30  E-value=2.6  Score=33.26  Aligned_cols=47  Identities=13%  Similarity=0.036  Sum_probs=29.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .++.++++...+.-.|...+.+ -+.++.+.|+ +|+++|.||+...|-
T Consensus       150 ~~~~~v~i~~p~NPtG~~~~~~-~l~~~~~~~~-~~~~ii~De~y~~~~  196 (359)
T PRK03158        150 EQTKIVWICNPNNPTGTYVNHE-ELLSFLESVP-SHVLVVLDEAYYEYV  196 (359)
T ss_pred             CCCCEEEEeCCCCCCCCCCCHH-HHHHHHHhCC-CCcEEEEECchHhhc
Confidence            3555666654455567666554 3333433342 699999999997763

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=83.28  E-value=5.5  Score=33.07  Aligned_cols=42  Identities=19%  Similarity=0.105  Sum_probs=30.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG-GVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g-illI~DEV~t   85 (114)
                      .++.++++|+...- -+..   -=++++.++++++| +++|+|....
T Consensus       139 ~~t~~v~~EspsNP-~l~v---~Dl~~i~~~a~~~g~~~~vVDnT~a  181 (386)
T PF01053_consen  139 PNTKLVFLESPSNP-TLEV---PDLEAIAKLAKEHGDILVVVDNTFA  181 (386)
T ss_dssp             TTEEEEEEESSBTT-TTB------HHHHHHHHHHTTT-EEEEECTTT
T ss_pred             ccceEEEEEcCCCc-cccc---ccHHHHHHHHHHhCCceEEeecccc
Confidence            58999999987542 1222   23789999999999 9999998875

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK05968 hypothetical protein; Provisional

Probab=83.19  E-value=2.4  Score=34.69  Aligned_cols=42  Identities=14%  Similarity=0.057  Sum_probs=31.2

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      +...+++|-..+    ...+..-++++.++|+++|+++|+|+.+..
T Consensus       147 ~tklV~ie~pt~----~~~~~~dl~~i~~la~~~gi~vivD~a~a~  188 (389)
T PRK05968        147 GAKLLYLESPTS----WVFELQDVAALAALAKRHGVVTMIDNSWAS  188 (389)
T ss_pred             cCCEEEEECCCC----CCCcHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence            345677774332    344557899999999999999999998753

>PRK05367 glycine dehydrogenase; Provisional

Probab=82.92  E-value=6.1  Score=36.74  Aligned_cols=53  Identities=17%  Similarity=0.105  Sum_probs=36.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.++++.      .+++++++-- +...|....+   ++++.++|+++|+++.+|..+.
T Consensus       628 ~~L~~~i~~~~------~~la~V~it~-pst~G~~e~~---I~eI~~i~h~~G~~v~VDgA~~  680 (954)
T PRK05367        628 DDLRAKAEEHA------DNLAAIMITY-PSTHGVFEET---IREICEIVHEHGGQVYLDGANM  680 (954)
T ss_pred             HHHHHHHhccC------CCeEEEEEEc-CCCCeeecCC---HHHHHHHHHHcCCEEEEECcCh
Confidence            34555565532      5788886654 2333443322   6899999999999999999996

>KOG0053|consensus

Probab=82.85  E-value=5.4  Score=33.92  Aligned_cols=60  Identities=18%  Similarity=0.041  Sum_probs=40.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++-+|.+|....- =+..+   =+++++++|+++|+++|+|+...+.    .   -++-+.  .-.||++-+
T Consensus       161 ~~t~~V~~ESPsNP-ll~v~---DI~~l~~la~~~g~~vvVDnTf~~p----~---~~~pL~--lGADIV~hS  220 (409)
T KOG0053|consen  161 ENTKAVFLESPSNP-LLKVP---DIEKLARLAHKYGFLVVVDNTFGSP----Y---NQDPLP--LGADIVVHS  220 (409)
T ss_pred             cCceEEEEECCCCC-ccccc---cHHHHHHHHhhCCCEEEEeCCcCcc----c---ccChhh--cCCCEEEEe
Confidence            47999999975431 11222   2678999999999999999988754    1   123233  347888754

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=82.30  E-value=4.1  Score=32.31  Aligned_cols=43  Identities=23%  Similarity=0.383  Sum_probs=28.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++.++++...+.-.|...+.    +++.+++++++.++|+||+...|
T Consensus       148 ~~k~v~l~~p~NPtG~~~~~----~~l~~l~~~~~~~~ivDe~y~~~  190 (351)
T PRK14807        148 QPKLVFLCNPNNPTGSVIER----EDIIKIIEKSRGIVVVDEAYFEF  190 (351)
T ss_pred             CCCEEEEeCCCCCCCCCCCH----HHHHHHHHhCCCEEEEeCcchhh
Confidence            55566655333334544442    45677788888899999999877

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=81.85  E-value=3.3  Score=33.98  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=30.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEE--ccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVA--DEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~--DEV~t   85 (114)
                      ++++++++..- ...|.+.    -++++.++|+++|+++|+  |.+..
T Consensus       203 ~~t~~v~l~~p-n~tG~v~----~l~~I~~~a~~~~~~~iv~~d~~~~  245 (447)
T PRK00451        203 DDTAAVVVQYP-NFFGVIE----DLEEIAEIAHAGGALFIVGVDPVSL  245 (447)
T ss_pred             CCeEEEEEECC-CCCCeeC----CHHHHHHHHHHCCCEEEEEcChHHh
Confidence            46777777653 4456653    389999999999999988  75543

>PRK10534 L-threonine aldolase; Provisional

Probab=81.71  E-value=3  Score=32.46  Aligned_cols=42  Identities=17%  Similarity=0.312  Sum_probs=31.1

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +..+++++- +.+ |. ..+.+.++++.++|++|++++++||...
T Consensus       129 ~~~lv~l~n-p~~-G~-v~~~~~l~~i~~~~~~~~~~lvvDEA~~  170 (333)
T PRK10534        129 RTRLLSLEN-THN-GK-VLPREYLKQAWEFTRERNLALHVDGARI  170 (333)
T ss_pred             cceEEEEec-CCC-Ce-ecCHHHHHHHHHHHHHcCCeEEeeHHHH
Confidence            455666663 333 54 4456778899999999999999999755

>PRK09275 aspartate aminotransferase; Provisional

Probab=81.54  E-value=3.3  Score=35.91  Aligned_cols=47  Identities=17%  Similarity=0.111  Sum_probs=34.8

Q ss_pred             CceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEcccccccc
Q psy1628          40 LYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGfg   88 (114)
                      .++.++++ -|  ++---...+++.++++.++|++  +++.+|.||+..-|.
T Consensus       240 ~~tkai~l~nP--~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~  289 (527)
T PRK09275        240 PSIKALFLVNP--SNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFV  289 (527)
T ss_pred             CCCCEEEEeCC--cCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhc
Confidence            45666665 55  3322256688999999999965  599999999998773

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=81.23  E-value=3.1  Score=34.57  Aligned_cols=41  Identities=17%  Similarity=0.117  Sum_probs=33.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVAD   81 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~D   81 (114)
                      .....+++|--+.++| ...|.+.++.+.++||+||+.|=+|
T Consensus       129 ~~~~~~~~e~~~te~G-tVy~l~el~~i~~~~k~~~l~LHmD  169 (342)
T COG2008         129 APTPLAVLENTATEGG-TVYPLDELEAISAVCKEHGLPLHMD  169 (342)
T ss_pred             CCCceEEEeeccCCCc-eecCHHHHHHHHHHHHHhCCceeec
Confidence            3556666666665666 6778899999999999999999998

>KOG1357|consensus

Probab=80.52  E-value=3.6  Score=35.77  Aligned_cols=76  Identities=21%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             HHHHHHHHhcC--CCC--CCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc--cccCccchh
Q psy1628          23 LFFERIFLSAS--LYP--FLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF--GRVGTHWWA   96 (114)
Q Consensus        23 ~~~e~~~~~~~--~~~--~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf--gRtG~~~~~   96 (114)
                      ..+||+|.+.-  +.|  +.--+.--+++|-+-+..|.+...+    ++.++++++...|++||-.++-  |+||.  ..
T Consensus       254 ~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp----~vvalkkkykayl~lDEAHSiGA~g~tGr--gv  327 (519)
T KOG1357|consen  254 QGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLP----EVVALKKKYKAYLYLDEAHSIGAMGATGR--GV  327 (519)
T ss_pred             HHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccH----HHHHhhccccEEEEeeccccccccCCCCc--ce
Confidence            46777777653  111  0014567888998887777776655    6778999999999999998754  67886  45


Q ss_pred             hhhcCCCCCc
Q psy1628          97 FQLQGDDIIP  106 (114)
Q Consensus        97 ~~~~g~~v~P  106 (114)
                      .+.+|  +.|
T Consensus       328 ce~~g--~d~  335 (519)
T KOG1357|consen  328 CEYFG--VDP  335 (519)
T ss_pred             eeccC--CCc
Confidence            66777  554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		2e-08
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		2e-07
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		3e-07
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		4e-07
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		4e-07
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		4e-07
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		4e-07
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		8e-07
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		9e-07
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		1e-06
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-06
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		1e-06
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		2e-06
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		2e-06
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		8e-06
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		4e-05
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		9e-05
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		9e-05
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		1e-04
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		1e-04
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		2e-04
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		2e-04
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		3e-04
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		3e-04
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		4e-04
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		5e-04

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 35  YPFLFLYP----CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV 90
           Y F+ L P       F E +Q  GG +IPP N+  E+ K  +  G + V DEVQ+G GR 
Sbjct: 202 YIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRT 261
Query: 91  GTHWWAFQLQGDDIIPDIVTV 111
           G     F ++  + +PD++T+
Sbjct: 262 GK---LFAIENFNTVPDVITL 279

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF  E +Q  GG I+PPA Y  E+ +  R    + VADEV  GFGR G  W+  Q  G  
Sbjct: 222 AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQHFG-- 278
Query: 104 IIPDIVT 110
             PD+ T
Sbjct: 279 FQPDLFT 285

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG I+P   +L  +       G V +ADEVQ GF R G  W+A + +G  
Sbjct: 228 AIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA-WFASEHEG-- 284
Query: 104 IIPDIVTV 111
           I+PDIVT+
Sbjct: 285 IVPDIVTM 292

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE + S GG I  P  Y+  + +   A G + + DE Q G GR GT    F  Q D 
Sbjct: 204 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRDG 260
Query: 104 IIPDIVTV 111
           + PDI+T+
Sbjct: 261 VTPDILTL 268

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE + S GG I  P  Y+  + +   A G + + DE Q G GR GT    F  Q D 
Sbjct: 206 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRDG 262
Query: 104 IIPDIVTV 111
           + PDI+T+
Sbjct: 263 VTPDILTL 270

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE + S GG I  P  Y+  + +   A G + + DE Q G GR GT    F  Q D 
Sbjct: 206 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRDG 262
Query: 104 IIPDIVTV 111
           + PDI+T+
Sbjct: 263 VTPDILTL 270

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE + S GG I  P  Y+  + +   A G + + DE Q G GR GT    F  Q D 
Sbjct: 205 AFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT---MFACQRDG 261
Query: 104 IIPDIVTV 111
           + PDI+T+
Sbjct: 262 VTPDILTL 269

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 28/49 (57%)
Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG 91
           CAF  E +Q   G I+P  NYL+ VY   +    + VADEVQ G GR G
Sbjct: 214 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTG 262

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG I+P   +L  + +  +  G V +ADEVQ GF R G  W+A   +G  
Sbjct: 229 AIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTG-EWFAVDHEG-- 285
Query: 104 IIPDIVTV 111
           ++PDI+T+
Sbjct: 286 VVPDIITM 293

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF  E + + GG +  P +Y + V++  +  G + ++DEV  GFGR G    AF     D
Sbjct: 218 AFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGK---AFGFXNYD 274
Query: 104 IIPDIVT 110
           + PDI+T
Sbjct: 275 VKPDIIT 281

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A F E +QS GG I+PP  +LR+     RA G + V DEV+VG  R G     F+ +G  
Sbjct: 217 AAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG-- 273
Query: 104 IIPDI 108
            +PDI
Sbjct: 274 FVPDI 278

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A F E +QS GG I+PP  +LR+     RA G + V DEV+VG  R G     F+ +G  
Sbjct: 204 AAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG-- 260
Query: 104 IIPDI 108
            +PDI
Sbjct: 261 FVPDI 265

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE +Q  GG I+ P +Y  E+ +       + +ADEV  GFGR G +W+  Q  G  
Sbjct: 226 AFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQTMG-- 282
Query: 104 IIPDIVTV 111
           I P I+T+
Sbjct: 283 IRPHIMTI 290

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF  E +Q   G  IPPA +L+E  +  +    + VADE+Q G GR G     F    D+
Sbjct: 185 AFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK---VFACDWDN 241
Query: 104 IIPDI 108
           + PD+
Sbjct: 242 VTPDM 246

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE + + GG IIPPA Y             + ++DEV  GFGR G  W+A + +   
Sbjct: 224 AFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWFASE-KVFG 281
Query: 104 IIPDIVT 110
           ++PDI+T
Sbjct: 282 VVPDIIT 288

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +   GG ++P   +L  + K     G V VADEVQ GF R G     F  + ++
Sbjct: 231 AVVIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGA---LFACEHEN 287
Query: 104 IIPDIV 109
           ++PD++
Sbjct: 288 VVPDLI 293

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
            FFAE +   GG I P   Y + +   +R      ++DEV  GFGR G  W        D
Sbjct: 231 GFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTY---D 287
Query: 104 IIPDIV 109
            +PD +
Sbjct: 288 FMPDAI 293

>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127) From Mesorhizobium Loti Maff303099 At 1.55 A Resolution Length = 459

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AF  E +   GG + PPA Y  ++   ++    + VADEV  GFGR+GT + +      
Sbjct: 223 AAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGSDHY--- 279
Query: 103 DIIPDIVTVV 112
            I PD++T+ 
Sbjct: 280 GIKPDLITIA 289

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
            FFAE +   GG I P   Y + +   +R      ++DEV  GFGR G  W        D
Sbjct: 233 GFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTY---D 289
Query: 104 IIPDIV 109
             PD +
Sbjct: 290 FTPDAI 295

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
            FFAE +   GG I P   Y + +   +R      ++DEV  GFGR G  W        D
Sbjct: 239 GFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTY---D 295
Query: 104 IIPDIV 109
             PD +
Sbjct: 296 FTPDAI 301

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CA F E +Q   G +     +L E  K       + V DEVQ G GR G   +A+Q  G 
Sbjct: 173 CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYG- 230
Query: 103 DIIPDIVT 110
            ++PD++T
Sbjct: 231 -VVPDVLT 237

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG----THWWAFQ 98
           CAF  E +Q   G I+P  +Y   V    +    + VADEVQ G GR G    TH +  +
Sbjct: 195 CAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLCTHHYGVK 254
Query: 99  LQGDDIIPDIV 109
                  PD++
Sbjct: 255 -------PDVI 258

>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase (Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A Resolution Length = 459

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AF  E +   GG + PPA Y   +   +     + VADEV  GFGR+GT + +      
Sbjct: 222 AAFIGEPILGTGGIVPPPAGYWEAIQTVLNKHDILLVADEVVTGFGRLGTXFGSDHY--- 278
Query: 103 DIIPDIVTVV 112
            + PDI+T+ 
Sbjct: 279 GLEPDIITIA 288

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CA F E +Q   G +     +L E  K       + V DEVQ G GR G   +A+Q  G 
Sbjct: 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGK-LFAYQKYG- 242
Query: 103 DIIPDIVT 110
            ++PD++T
Sbjct: 243 -VVPDVLT 249

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A   E +Q  GG I+P   +L  +    R    V +ADEVQ GF R G     F  + + 
Sbjct: 230 AVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA---MFACEHEG 286
Query: 104 IIPDIV 109
           I PD++
Sbjct: 287 IDPDLI 292

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGG----VCVADEVQVGFGRVGTHWWAFQ 98
           CA   ES+Q  GG  I PAN  ++ YK +R        + +ADE+Q G GR G     F 
Sbjct: 181 CAIILESVQGEGG--INPAN--KDFYKALRKLCDEKDILLIADEIQCGXGRSGKF---FA 233
Query: 99  LQGDDIIPDIVT 110
            +   I+PDI T
Sbjct: 234 YEHAQILPDIXT 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-22
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	9e-22
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	6e-16
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-15
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	5e-15
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	1e-14
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	1e-14
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	2e-14
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	5e-14
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	5e-14
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	7e-14
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	1e-13
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	2e-13
3hmu_A	472	Aminotransferase, class III; structural genomics,	2e-13
1z7d_A	433	Ornithine aminotransferase; structural genomics co	3e-13
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	3e-13
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	4e-13
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	8e-13
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	2e-12
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	3e-12
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	4e-12
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	5e-12
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	9e-12
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	1e-11
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	1e-11
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	4e-11
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-10
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	6e-10

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score = 89.5 bits (223), Expect = 1e-22
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AF AE + S GG I  P  Y+  + +   A G + + DE Q G GR G   +A   Q D
Sbjct: 205 AAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTG-TMFAC--QRD 261

Query: 103 DIIPDIVTV 111
            + PDI+T+
Sbjct: 262 GVTPDILTL 270

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 87.2 bits (217), Expect = 9e-22
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A F E +QS GG I+PP  +LR+     RA G + V DEV+VG  R G     F+ +G  
Sbjct: 204 AAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG-RLHCFEHEG-- 260

Query: 104 IIPDIVTV 111
            +PDI+ +
Sbjct: 261 FVPDILVL 268

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score = 71.1 bits (175), Expect = 6e-16
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
             A   E +Q  GG I+P   +L  +       G V +ADEVQ GF R G  W+A + +G
Sbjct: 226 LAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG-AWFASEHEG 284

Query: 102 DDIIPDIVTV 111
             I+PDIVT+
Sbjct: 285 --IVPDIVTM 292

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score = 69.9 bits (172), Expect = 1e-15
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
             A   E +Q  GG I+P   +L  +    R    V +ADEVQ GF R G   +A + +G
Sbjct: 228 LAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA-MFACEHEG 286

Query: 102 DDIIPDIVTV 111
             I PD++  
Sbjct: 287 --IDPDLIVT 294

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score = 68.4 bits (168), Expect = 5e-15
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A   E +Q  GG       +++ +       G + +ADEVQ G GR GT  +A +  G 
Sbjct: 201 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMG- 258

Query: 103 DIIPDIVTV 111
            + PD+ T 
Sbjct: 259 -VAPDLTTF 266

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
                E +QS GG      ++ R++    R  G   + DEVQ G G  G  +WA +  G 
Sbjct: 260 AGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWGL 318

Query: 103 DIIPDIVTV 111
           D   D++T 
Sbjct: 319 DDPADVMTF 327

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
              F E +Q  GG +IPP N+  E+ K  +  G + V DEVQ+G GR G   +A +    
Sbjct: 214 AGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFN- 271

Query: 103 DIIPDIVTV 111
             +PD++T+
Sbjct: 272 -TVPDVITL 279

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score = 66.4 bits (163), Expect = 2e-14
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A   E +Q  GG       +LR   +  +  G + + DE+Q G GR G   +AF  +  
Sbjct: 187 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG-KRFAF--EHF 243

Query: 103 DIIPDIVTV 111
            I+PDI+T+
Sbjct: 244 GIVPDILTL 252

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 17/76 (22%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVC-------VADEVQVGFGRVGTHWW 95
            AF  E + + GG ++ P +Y++     V      C       ++DEV  GFGR G   +
Sbjct: 217 AAFIMEPIITGGGILMAPQDYMKA----VHE---TCQKHGALLISDEVICGFGRTG-KAF 268

Query: 96  AFQLQGDDIIPDIVTV 111
            F     D+ PDI+T+
Sbjct: 269 GFMN--YDVKPDIITM 282

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score = 65.3 bits (160), Expect = 5e-14
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
            FFAE +   GG I P   Y + +   +R      ++DEV  GFGR G + W       D
Sbjct: 233 GFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTG-NTWGCVT--YD 289

Query: 104 IIPDIVTV 111
             PD +  
Sbjct: 290 FTPDAIIS 297

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score = 64.9 bits (159), Expect = 7e-14
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF  E +   GG + PPA Y  ++   ++    + VADEV  GFGR+G   +        
Sbjct: 224 AFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLG-TMFGSDH--YG 280

Query: 104 IIPDIVTV 111
           I PD++T+
Sbjct: 281 IKPDLITI 288

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AF  E +Q   G ++P   YL  V +       + +ADE+Q G  R G  W A     +
Sbjct: 225 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAV--DYE 281

Query: 103 DIIPDIVT 110
           ++ PDIV 
Sbjct: 282 NVRPDIVL 289

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF  E +Q  GG I+PPA Y  E+ +  R    + VADEV  GFGR G  W+  Q     
Sbjct: 222 AFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTG-EWFGHQH--FG 278

Query: 104 IIPDIVTV 111
             PD+ T 
Sbjct: 279 FQPDLFTA 286

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE +Q  GG I+ P +Y  E+ +       + +ADEV  GFGR G +W+  Q     
Sbjct: 226 AFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTG-NWFGTQT--MG 282

Query: 104 IIPDIVTV 111
           I P I+T+
Sbjct: 283 IRPHIMTI 290

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CAF  E +Q   G I+P  NYL+ VY   +    + VADEVQ G GR G           
Sbjct: 214 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCV--HHY 270

Query: 103 DIIPDIVTV 111
           ++ PD++ +
Sbjct: 271 NVKPDVILL 279

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score = 62.9 bits (154), Expect = 3e-13
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AF  E +Q   G  IPPA +L+E  +  +    + VADE+Q G GR G   +A      
Sbjct: 184 AAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK-VFACDWDN- 241

Query: 103 DIIPDIVTV 111
            + PD+  +
Sbjct: 242 -VTPDMYIL 249

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score = 63.0 bits (154), Expect = 4e-13
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           AF AE + + GG IIPPA Y             + ++DEV  GFGR G  W+A + +   
Sbjct: 224 AFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCG-EWFASE-KVFG 281

Query: 104 IIPDIVTV 111
           ++PDI+T 
Sbjct: 282 VVPDIITF 289

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score = 62.2 bits (152), Expect = 8e-13
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 44  AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD 103
           A F E L    G ++PP  YL+   +       + V DEV  GFGR G   +     G  
Sbjct: 222 AVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTG-SMFGADSFG-- 278

Query: 104 IIPDIVTV 111
           + PD++ +
Sbjct: 279 VTPDLMCI 286

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score = 60.6 bits (148), Expect = 2e-12
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
                E +Q  GG      ++L ++ +  +    + + DEVQ G GR G  ++A+Q    
Sbjct: 174 AGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFN- 231

Query: 103 DIIPDIVTV 111
            + PD++ +
Sbjct: 232 -LKPDVIAL 239

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score = 60.3 bits (147), Expect = 3e-12
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 43  CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
            A   ES+ Q   G I+ P  YL  V +       + + DEV  GFGR G   +A + + 
Sbjct: 212 AALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK-MFACEHEN 270

Query: 102 DDIIPDIVTV 111
             + PD++  
Sbjct: 271 --VQPDLMAA 278

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
             F AE +Q  GG       +   + +       + + DEVQ G G  GT  WA+Q    
Sbjct: 233 ACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-AWAYQQLD- 290

Query: 103 DIIPDIVTV 111
            + PDIV  
Sbjct: 291 -VAPDIVAF 298

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 17/77 (22%)

Query: 43  CAFFAESLQ-SCGGQIIPPANYLREVYKHVRAAGGVC-------VADEVQVGFGRVGTHW 94
            AF AE +  +    + P   Y   V    R    +C       +ADEV  G GR G+  
Sbjct: 192 AAFMAEPVVGASDAALAPAPGYYERV----RD---ICDEAGIIFIADEVMSGMGRCGS-P 243

Query: 95  WAFQLQGDDIIPDIVTV 111
            A   +   + PDI  +
Sbjct: 244 LALS-RWSGVTPDIAVL 259

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score = 59.1 bits (144), Expect = 9e-12
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CA F E +Q   G +     +L E  K       + V DEVQ G GR G   +A+Q  G 
Sbjct: 185 CAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYG- 242

Query: 103 DIIPDIVTV 111
            ++PD++T 
Sbjct: 243 -VVPDVLTT 250

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CA   ES+Q  GG      ++ + + K       + +ADE+Q G GR G  ++A++    
Sbjct: 181 CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQ- 238

Query: 103 DIIPDIVTV 111
            I+PDI+T 
Sbjct: 239 -ILPDIMTS 246

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CA   E +Q  GG       +L+ +         + V DEVQ G GR G   +A+   G 
Sbjct: 203 CAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYG- 260

Query: 103 DIIPDIVTV 111
            + PDI+T 
Sbjct: 261 -VTPDILTS 268

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score = 57.1 bits (139), Expect = 4e-11
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 43  CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
            A   E + Q  GG  +    +L+ + K     G + +ADE+  GFGR G   +A +   
Sbjct: 206 AAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE 264

Query: 102 DDIIPDIVTV 111
             I PDI+ +
Sbjct: 265 --IAPDILCL 272

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score = 55.3 bits (134), Expect = 2e-10
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 43  CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
            A   E + Q  GG       YL ++    R    + + DE+  GFGR G   +A    G
Sbjct: 235 AAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADHAG 293

Query: 102 DDIIPDIVTV 111
             + PDI+ V
Sbjct: 294 --VSPDIMCV 301

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 43  CAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
            A   E +    GG  +    + R +    R      + DEV  GF R+G      +L G
Sbjct: 596 GALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ETTTELLG 654

Query: 102 DDIIPDIVTV 111
               PDI   
Sbjct: 655 --CKPDIACF 662

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.96
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.96
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.92
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.9
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.88
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.86
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.84
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.82
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.82
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.82
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.81
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.8
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.8
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.79
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.77
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.76
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.76
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.75
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.75
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.75
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.74
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.73
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.72
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.71
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.71
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.69
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.68
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.68
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.67
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.66
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.65
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.65
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.45
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.57
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.52
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.51
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.39
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.38
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.33
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	99.17
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	98.98
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	98.94
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	98.75
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	98.67
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	98.66
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	98.65
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	98.64
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	98.6
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	98.59
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	98.58
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	98.57
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	98.57
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	98.56
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	98.52
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	98.51
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	98.49
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	98.49
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	98.46
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	98.45
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	98.43
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	98.43
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	98.42
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	98.41
1vp4_A	425	Aminotransferase, putative; structural genomics, j	98.41
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	98.41
1svv_A	359	Threonine aldolase; structural genomics, structura	98.4
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	98.4
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	98.4
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	98.4
3nra_A	407	Aspartate aminotransferase; structural genomics, j	98.39
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	98.37
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	98.37
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	98.37
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	98.36
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	98.35
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	98.35
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	98.33
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	97.67
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	98.32
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	98.3
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	98.29
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	98.28
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	98.27
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	98.25
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	98.25
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	98.25
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	98.24
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	98.24
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	98.22
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	98.22
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	98.21
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	98.2
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	98.2
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	98.19
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	98.18
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	98.16
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	98.16
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	98.15
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	98.14
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	98.13
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	98.13
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	98.11
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	98.1
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	98.09
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	98.06
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	98.03
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	98.01
3ele_A	398	Amino transferase; RER070207001803, structural gen	98.0
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	98.0
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	97.99
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	97.99
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	97.99
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	97.98
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	97.98
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	97.96
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	97.96
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	97.96
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	97.94
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	97.92
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	97.92
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	97.91
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	97.91
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	97.91
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	97.89
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	97.89
3pj0_A	359	LMO0305 protein; structural genomics, joint center	97.88
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	97.86
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.85
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	97.85
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	97.85
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	97.85
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	97.84
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	97.84
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	97.84
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	97.83
3rq1_A	418	Aminotransferase class I and II; structural genomi	97.82
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	97.82
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	97.81
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	97.81
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	97.81
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	97.79
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	97.78
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	97.77
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	97.74
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	97.73
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	97.72
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	97.72
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	97.7
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	97.68
1o69_A	394	Aminotransferase; structural genomics, unknown fun	97.67
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	97.64
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	97.62
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	97.61
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	97.61
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	97.6
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	97.6
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	97.58
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	97.57
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	97.57
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	97.56
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	97.56
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	97.56
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	97.55
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	97.55
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	97.54
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	97.5
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	97.49
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	97.49
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	97.48
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	97.48
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	97.43
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	97.43
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	97.39
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	97.38
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.38
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	97.33
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	97.31
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	97.29
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	97.22
1iug_A	352	Putative aspartate aminotransferase; wild type, py	97.22
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	97.21
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	97.16
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	97.14
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	97.14
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	97.13
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	97.12
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	97.08
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	97.07
2fnu_A	375	Aminotransferase; protein-product complex, structu	97.07
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	97.03
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	97.02
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	96.92
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	96.84
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	96.83
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	96.63
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	96.45
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	96.45
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	96.39
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	96.28
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	96.24
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	96.2
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	96.09
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	95.95
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	95.86
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	95.68
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	95.66
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	95.59
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	94.97
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	94.82
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	94.81
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	94.46
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	94.4
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	94.13
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	93.64
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	93.18
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	93.09
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	92.99
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	92.82
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	92.67
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	89.98
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	89.84
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	89.82
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	87.78
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	86.56
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	84.86
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	84.83
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	84.8

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.96  E-value=2.3e-30  Score=214.47  Aligned_cols=84  Identities=27%  Similarity=0.415  Sum_probs=77.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      ..+++.+.+.  ++   +++||||+||+||++|+++|+++|++++|++|++||+|||+|||||||||||+ ||+++++| 
T Consensus       223 ~~l~~~i~~~--~~---~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~-~fa~e~~g-  295 (473)
T 4e3q_A          223 RELEETIQRE--GA---DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGN-TWGCVTYD-  295 (473)
T ss_dssp             HHHHHHHHHH--CG---GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSS-SCHHHHTT-
T ss_pred             HHHHHHHHhh--CC---CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccc-hhHHHhcC-
Confidence            4566666654  34   79999999999999999999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       296 -v~PDi~t~~K~  306 (473)
T 4e3q_A          296 -FTPDAIISSKN  306 (473)
T ss_dssp             -CCCSEEEECGG
T ss_pred             -CCCChHHhccc
Confidence             99999999995

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.96  E-value=2e-29  Score=207.85  Aligned_cols=72  Identities=36%  Similarity=0.654  Sum_probs=70.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++|||+|+||+||++|+++|+++|++++|++|++||++||+|||||||||||+ ||+++++|  ++|||+|+||+
T Consensus       225 ~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~-~~a~e~~g--v~PDivt~gK~  296 (456)
T 4atq_A          225 DQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGE-WFAVDHEG--VVPDIITMAKG  296 (456)
T ss_dssp             GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT--CCCSEEEECGG
T ss_pred             CceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccc-cccccccC--CCCchhhhhhc
Confidence            79999999999999999999999999999999999999999999999999998 99999999  99999999995

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.92  E-value=3.2e-25  Score=183.26  Aligned_cols=81  Identities=19%  Similarity=0.170  Sum_probs=75.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      +++||||+||+||++|+++|+++|+++||++|++||++||+||||||  |||. +|+++++| 
T Consensus       208 ~~l~~~l~~~~------~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG--R~G~-~~a~e~~g-  277 (454)
T 4ao9_A          208 QTARAQIERHG------PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS--RLAP-HGLANKLG-  277 (454)
T ss_dssp             HHHHHHHHHTG------GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG--GGST-TCHHHHHT-
T ss_pred             HHHHHHHhhcC------CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC--CCcc-ccchhccC-
Confidence            46778888763      79999999999999999999999999999999999999999999995  9998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++||++|+||+
T Consensus       278 -v~PDi~t~gK~  288 (454)
T 4ao9_A          278 -IRSDLTTLGKY  288 (454)
T ss_dssp             -CCCSEEEEEGG
T ss_pred             -CCCcEEEeccc
Confidence             99999999995

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.90  E-value=5.3e-24  Score=186.27  Aligned_cols=90  Identities=21%  Similarity=0.238  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhcC--CCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccch
Q psy1628          19 AVVHLFFERIFLSAS--LYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWW   95 (114)
Q Consensus        19 ~~~~~~~e~~~~~~~--~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~   95 (114)
                      ..+.+.+|+.+++..  .++   +++||||+||+ ||+||+.++|++|+++++++|++||++||+|||+|||||||+ +|
T Consensus       573 ~~~~~~le~~l~~~~~~~~~---~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~-~f  648 (831)
T 4a0g_A          573 RIYSAYLSKHLQEHSGVRQS---AHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGV-ET  648 (831)
T ss_dssp             HHHHHHHHHHC------------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSB-SS
T ss_pred             HHHHHHHHHHHHhhhhhcCC---CcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCC-ch
Confidence            345567777776421  123   79999999997 999999999999999999999999999999999999999998 99


Q ss_pred             hhhhcCCCCCcCEEEeecC
Q psy1628          96 AFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        96 ~~~~~g~~v~PDivt~gK~  114 (114)
                      +++++|  ++||++|+||+
T Consensus       649 a~e~~g--v~PDiitlsK~  665 (831)
T 4a0g_A          649 TTELLG--CKPDIACFAKL  665 (831)
T ss_dssp             THHHHS--SCCSEEEECGG
T ss_pred             hhHhcC--CCCcEEEEecc
Confidence            999999  99999999995

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.88  E-value=1.1e-22  Score=165.81  Aligned_cols=85  Identities=34%  Similarity=0.527  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+|+.+++.  ++   ++++++|+||+++.+|+++++++|+++|+++|++||+++|+|||+|||||+|+ +|++++++
T Consensus       209 ~~~le~~i~~~--~~---~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~-~~a~~~~~  282 (472)
T 3hmu_A          209 ARELEEAILEL--GE---NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN-WFGTQTMG  282 (472)
T ss_dssp             HHHHHHHHHHH--CG---GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHHHT
T ss_pred             HHHHHHHHHhc--CC---CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCc-cchhHHhC
Confidence            35677777764  23   68999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++|+||+
T Consensus       283 --v~pdi~t~sK~  293 (472)
T 3hmu_A          283 --IRPHIMTIAKG  293 (472)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCCceeeechh
Confidence              99999999995

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.86  E-value=1e-21  Score=160.04  Aligned_cols=85  Identities=36%  Similarity=0.574  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh-hc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ-LQ  100 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~-~~  100 (114)
                      .+.+|+.+++.  ++   ++++++|+||+++.+|+++++++|+++|+++|++||+++|+|||+|||||+|+ +|+++ ++
T Consensus       207 ~~~le~~i~~~--~~---~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~-~~~~~~~~  280 (476)
T 3i5t_A          207 VQEFEDRIESL--GP---DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGE-WFASEKVF  280 (476)
T ss_dssp             HHHHHHHHHHH--CG---GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHHTT
T ss_pred             HHHHHHHHHhc--CC---CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccC-ceeeeccc
Confidence            45778888764  23   68999999999999999999999999999999999999999999999999998 89999 99


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      +  +.||++|+||+
T Consensus       281 ~--v~pdi~t~sK~  292 (476)
T 3i5t_A          281 G--VVPDIITFAKG  292 (476)
T ss_dssp             C--CCCSEEEECGG
T ss_pred             C--CCcchhhhhhh
Confidence            9  99999999995

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.84  E-value=2.6e-21  Score=156.99  Aligned_cols=84  Identities=27%  Similarity=0.388  Sum_probs=77.6

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcc-cCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAES-LQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEP-v~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      .+.+++.++++.      ++++++++|| +++++|++.++++|+++++++|++||+++|+|||+|||||+|. +|+++++
T Consensus       220 ~~~le~~l~~~~------~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~-~~a~~~~  292 (457)
T 3tfu_A          220 SAAFEAQLAQHA------GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGA-LFAADHA  292 (457)
T ss_dssp             HHHHHHHHHHHG------GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHH
T ss_pred             HHHHHHHHHhCC------CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccc-hhHhHhc
Confidence            356777787652      6899999999 8999999999999999999999999999999999999999998 8999999


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      +  +.||++|+||+
T Consensus       293 ~--~~pdiit~sK~  304 (457)
T 3tfu_A          293 G--VSPDIMCVGKA  304 (457)
T ss_dssp             T--CCCSEEEECGG
T ss_pred             C--CCceEEEEChh
Confidence            9  99999999995

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.82  E-value=2.6e-20  Score=149.78  Aligned_cols=85  Identities=33%  Similarity=0.528  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+|+.+++.  ++   ++++++++||+++.+|..+++++|+++|+++|++||+++|+|||++||||+|+ +|++++++
T Consensus       207 ~~~le~~i~~~--~~---~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~-~~~~~~~~  280 (460)
T 3gju_A          207 ADKLEEMILAE--GP---ETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGT-MFGSDHYG  280 (460)
T ss_dssp             HHHHHHHHHHH--CG---GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SCHHHHHT
T ss_pred             HHHHHHHHHhc--CC---CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-cchHhhcC
Confidence            46677777764  23   68999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++|+||+
T Consensus       281 --~~pdi~t~sK~  291 (460)
T 3gju_A          281 --IKPDLITIAKG  291 (460)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCCCeeeeehh
Confidence              99999999995

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.82  E-value=2.7e-20  Score=149.65  Aligned_cols=85  Identities=36%  Similarity=0.585  Sum_probs=77.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+|+.+++.  ++   ++++++++||+++++|...++++|+++++++|++||+++|+|||++||||+|+ +|++++++
T Consensus       205 ~~~le~~i~~~--~~---~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~-~~~~~~~~  278 (459)
T 4a6r_A          205 ARWLEEKILEI--GA---DKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGE-WFGHQHFG  278 (459)
T ss_dssp             HHHHHHHHHHH--CG---GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHT
T ss_pred             HHHHHHHHHHc--CC---CCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccc-cchHhhcC
Confidence            45678888764  23   68999999999999999999999999999999999999999999999999998 89999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++|+||+
T Consensus       279 --~~pdi~t~sK~  289 (459)
T 4a6r_A          279 --FQPDLFTAAKG  289 (459)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCCCeeehhhh
Confidence              99999999995

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.82  E-value=2.7e-20  Score=148.97  Aligned_cols=83  Identities=24%  Similarity=0.364  Sum_probs=76.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQ-SCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~-g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      +.+|+.++++.      ++++++++||++ +++|...++++|+++++++|++||+++|+|||++||||+|. +|++++++
T Consensus       198 ~~le~~l~~~~------~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~-~~a~~~~~  270 (448)
T 3dod_A          198 RELAQLLEEHH------EEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGK-MFACEHEN  270 (448)
T ss_dssp             HHHHHHHHHHG------GGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             HHHHHHHHhCC------CCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccc-hhhhhhcC
Confidence            45777887542      689999999998 99999999999999999999999999999999999999998 88999999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++|+||+
T Consensus       271 --~~~di~t~sK~  281 (448)
T 3dod_A          271 --VQPDLMAAGKG  281 (448)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCCCEEEeccc
Confidence              99999999995

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.81  E-value=8.5e-20  Score=146.93  Aligned_cols=72  Identities=33%  Similarity=0.528  Sum_probs=69.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++++|++.++++|+++|+++|++||+++|+|||++||||+|. +|++++++  +.||++|+||+
T Consensus       226 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~-~~~~~~~~--~~pdi~t~sK~  297 (451)
T 3oks_A          226 DNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGA-MFACEHEG--IDPDLIVTAKG  297 (451)
T ss_dssp             GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGG
T ss_pred             CCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCcccc-chhhhhcC--CCCCeeeehhh
Confidence            68999999999999999999999999999999999999999999999999998 89999999  99999999995

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.80  E-value=1.7e-19  Score=143.94  Aligned_cols=84  Identities=27%  Similarity=0.511  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      .+.+|+.+++.  ++   ++++++++||. ++ +|...++++|+++|+++|++||+++|+|||++||||+|. +|+++++
T Consensus       201 ~~~le~~l~~~--~~---~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~-~~~~~~~  273 (452)
T 3n5m_A          201 VKEVDRVMTWE--LS---ETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGK-AFGFMNY  273 (452)
T ss_dssp             HHHHHHHHHHH--CG---GGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGT
T ss_pred             HHHHHHHHHhc--CC---CCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccc-cchhhhc
Confidence            45677777632  12   68999999999 89 999999999999999999999999999999999999998 8899999


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      +  +.||++|+||+
T Consensus       274 ~--~~~di~t~sK~  285 (452)
T 3n5m_A          274 D--VKPDIITMAKG  285 (452)
T ss_dssp             T--CCCSEEEECGG
T ss_pred             C--CCCCEEeeccc
Confidence            9  99999999995

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.80  E-value=1.2e-19  Score=146.36  Aligned_cols=72  Identities=39%  Similarity=0.664  Sum_probs=69.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++|+||+++++|+++++++|+++|+++|++||+++|+|||++||||+|. +|++++++  +.||++|+||+
T Consensus       224 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~-~~a~~~~~--~~pdi~t~sK~  295 (453)
T 4ffc_A          224 QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA-WFASEHEG--IVPDIVTMAKG  295 (453)
T ss_dssp             GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT--CCCSEEEECGG
T ss_pred             CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc-cchhhhcC--CCcchHhhhhh
Confidence            68999999999999999999999999999999999999999999999999998 89999999  99999999995

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.79  E-value=2e-19  Score=146.44  Aligned_cols=87  Identities=24%  Similarity=0.350  Sum_probs=75.9

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+++.++++....   .+++++++||+++++|.++++++|+++|+++|++||+++|+||||+||||+|. +|+++++|
T Consensus       242 ~~~l~~~l~~~~~~~---~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~g  317 (472)
T 1ohv_A          242 LEEVEDLIVKYRKKK---KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWG  317 (472)
T ss_dssp             HHHHHHHHHHHHHTT---CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGC
T ss_pred             HHHHHHHHHhcCCCC---CCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCC-chhccccC
Confidence            346677776542000   28999999999999999999999999999999999999999999999999998 88999998


Q ss_pred             CCCC--cCEEEeecC
Q psy1628         102 DDII--PDIVTVVWN  114 (114)
Q Consensus       102 ~~v~--PDivt~gK~  114 (114)
                        +.  ||++|+||+
T Consensus       318 --v~~~~Di~t~sK~  330 (472)
T 1ohv_A          318 --LDDPADVMTFSKK  330 (472)
T ss_dssp             --CSSCCSEEEECGG
T ss_pred             --CCCCCCEEEEccc
Confidence              86  999999995

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.77  E-value=1.1e-18  Score=140.29  Aligned_cols=84  Identities=26%  Similarity=0.336  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+++.++++.      ++++++++||+++.+|...++++|+++++++|++||+++|+||||+||||+|. +|++++++
T Consensus       218 ~~~le~~i~~~~------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~-~~~~~~~~  290 (449)
T 2cjg_A          218 LRQARAAFETRP------HDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGT-AWAYQQLD  290 (449)
T ss_dssp             HHHHHHHHHHST------TTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSTHHHHT
T ss_pred             HHHHHHHHHhcC------CceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCc-ceeecccC
Confidence            345788887642      68999999999999999999999999999999999999999999999999998 88889999


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++|+||+
T Consensus       291 --~~~di~t~sK~  301 (449)
T 2cjg_A          291 --VAPDIVAFGKK  301 (449)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCceEEEecCc
Confidence              99999999995

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.76  E-value=1.4e-18  Score=137.44  Aligned_cols=82  Identities=23%  Similarity=0.251  Sum_probs=75.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      ++++++++||.++++|.+.++++|+++|+++|++||+++|+|||++|| |+|. ++++++++ 
T Consensus       190 ~~le~~l~~~~------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~-~~~~~~~~-  260 (434)
T 3l44_A          190 ETLKEALDKWG------HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMY-GGAQDLLG-  260 (434)
T ss_dssp             HHHHHHHHHHG------GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSS-SCHHHHHT-
T ss_pred             HHHHHHHHhCC------CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccc-cHHHHHcC-
Confidence            46777887752      689999999999999999999999999999999999999999999999 9998 88899999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++|+||+
T Consensus       261 -~~~di~t~sK~  271 (434)
T 3l44_A          261 -VTPDLTALGKV  271 (434)
T ss_dssp             -CCCSEEEEEGG
T ss_pred             -CCCCeeehhhh
Confidence             99999999995

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.76  E-value=2.3e-18  Score=136.34  Aligned_cols=82  Identities=21%  Similarity=0.210  Sum_probs=75.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      ++++++++||+++++|.+.++++|+++++++|++||+++|+||+++|| |+|. ++++++++ 
T Consensus       188 ~~le~~l~~~~------~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~-r~g~-~~~~~~~~-  258 (429)
T 4e77_A          188 ASVRQAFEQYP------QEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGF-RVAL-AGAQDYYH-  258 (429)
T ss_dssp             HHHHHHHHHST------TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBT-TTBT-TCHHHHTT-
T ss_pred             HHHHHHHHhcC------CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCc-ccCc-chHHHhcC-
Confidence            46788887752      689999999999999999999999999999999999999999999999 9998 88899999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++|+||+
T Consensus       259 -~~pdi~t~sK~  269 (429)
T 4e77_A          259 -VIPDLTCLGKI  269 (429)
T ss_dssp             -CCCSEEEEEGG
T ss_pred             -CCCCeeeeccc
Confidence             99999999995

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.75  E-value=2.5e-18  Score=137.69  Aligned_cols=72  Identities=35%  Similarity=0.578  Sum_probs=68.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++++|.+.++++++++++++|++||+++|+||+++||||+|. +|++++++  +.||++|+||+
T Consensus       211 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~-~~~~~~~~--~~~di~t~sK~  282 (433)
T 1z7d_A          211 PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYN--VKPDVILLGKA  282 (433)
T ss_dssp             TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGG
T ss_pred             CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCc-chhhHhcC--CCCCEEEECcc
Confidence            57999999999999999999999999999999999999999999999999998 88889999  99999999995

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.75  E-value=3e-18  Score=137.67  Aligned_cols=72  Identities=31%  Similarity=0.512  Sum_probs=68.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||+++.+|...++++++++++++|++||+++|+||+++||||+|. +|++++++  +.||++++||+
T Consensus       222 ~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~-~~~~~~~~--~~~Di~t~sK~  293 (439)
T 2oat_A          222 PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYEN--VRPDIVLLGKA  293 (439)
T ss_dssp             TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGG
T ss_pred             CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCc-chhHHHhC--CCCcEEEeccc
Confidence            57999999999999999999999999999999999999999999999999998 88889999  99999999995

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.75  E-value=4e-18  Score=135.18  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=75.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+|+.++++.      ++++++++||.++++|.+.++++|+++++++|++||+++|+||+++|| |+|. ++++++++ 
T Consensus       188 ~~le~~l~~~~------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~-  258 (429)
T 3k28_A          188 ESVKYAFEQFG------DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAY-NCGQGYYG-  258 (429)
T ss_dssp             HHHHHHHHHHG------GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSST-THHHHHHT-
T ss_pred             HHHHHHHHhCC------CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chHHHHhC-
Confidence            46777787652      689999999999999999999999999999999999999999999999 9998 88899999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++|+||+
T Consensus       259 -~~~di~t~sK~  269 (429)
T 3k28_A          259 -VTPDLTCLGKV  269 (429)
T ss_dssp             -CCCSEEEECGG
T ss_pred             -CCCceehhhhh
Confidence             99999999995

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.74  E-value=3.7e-18  Score=134.86  Aligned_cols=84  Identities=27%  Similarity=0.379  Sum_probs=76.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCC-CCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc-
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQS-CGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ-  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g-~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~-  100 (114)
                      +.+|+.++++  ++   ++++++++||.++ ++|...++++|+++++++|++||+++|+|||++||+|+|. +++++++ 
T Consensus       177 ~~le~~l~~~--~~---~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~-~~~~~~~~  250 (430)
T 3i4j_A          177 EGLRALLERE--GP---ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGS-PLALSRWS  250 (430)
T ss_dssp             THHHHHHHHH--CG---GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT
T ss_pred             HHHHHHHHhc--CC---CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccc-hhhhhhhc
Confidence            5677777764  23   6899999999999 9999999999999999999999999999999999999998 8899999 


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      +  +.||++|+||+
T Consensus       251 ~--~~~di~t~sK~  262 (430)
T 3i4j_A          251 G--VTPDIAVLGKG  262 (430)
T ss_dssp             T--CCCSEEEECGG
T ss_pred             C--CCCcEEEEccc
Confidence            8  99999999995

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.73  E-value=9.7e-18  Score=132.89  Aligned_cols=82  Identities=26%  Similarity=0.305  Sum_probs=74.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      ++++++++||+++++|...++++|+++++++|++||+++|+||+++|| |+|. ++++++++ 
T Consensus       191 ~~le~~l~~~~------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~-  261 (434)
T 2epj_A          191 EALERVFAEYG------DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGF-RLGL-EGAQGYFN-  261 (434)
T ss_dssp             HHHHHHHHHHG------GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTT-TSST-THHHHHHT-
T ss_pred             HHHHHHHHhCC------CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhce-eCCc-chhhHHhC-
Confidence            45777777642      589999999999989999999999999999999999999999999999 8997 88888999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++++||+
T Consensus       262 -~~~di~s~sK~  272 (434)
T 2epj_A          262 -IEGDIIVLGKI  272 (434)
T ss_dssp             -CCCSEEEEEGG
T ss_pred             -CCCCeeeecch
Confidence             99999999995

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.72  E-value=1.6e-17  Score=131.19  Aligned_cols=82  Identities=22%  Similarity=0.257  Sum_probs=75.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      ++++++++||.++++|...++++|+++++++|++||+++|+||+++|| |+|. +++.++++ 
T Consensus       187 ~~le~~l~~~~------~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~-~~~~~~~~-  257 (427)
T 3fq8_A          187 EAVKALFAENP------GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGF-RIAY-GGVQEKFG-  257 (427)
T ss_dssp             HHHHHHHHHST------TTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT-THHHHHTT-
T ss_pred             HHHHHHHHhCC------CCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCc-chhhHhcC-
Confidence            46778887752      689999999999999999999999999999999999999999999999 9998 88889999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++++||+
T Consensus       258 -~~~di~t~sK~  268 (427)
T 3fq8_A          258 -VTPDLTTLGKI  268 (427)
T ss_dssp             -CCCSEEEECGG
T ss_pred             -CCCChhhhhhh
Confidence             99999999995

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.71  E-value=3.1e-17  Score=130.46  Aligned_cols=85  Identities=25%  Similarity=0.394  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      -+.+|+.++++  ++   ++++++++||++++.|...++++|+++++++|++||+++|+||+++||||+|. +++++.++
T Consensus       205 ~~~le~~l~~~--~~---~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~  278 (449)
T 3a8u_X          205 ADELLKLIELH--DA---SNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGS-MFGADSFG  278 (449)
T ss_dssp             HHHHHHHHHHH--CG---GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHT
T ss_pred             HHHHHHHHHhc--CC---CCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCc-chhhhhcC
Confidence            45677777654  22   58999999999988999999999999999999999999999999999999997 78889998


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++++||+
T Consensus       279 --~~~di~s~sK~  289 (449)
T 3a8u_X          279 --VTPDLMCIAKQ  289 (449)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCCCEEEEccc
Confidence              99999999995

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.71  E-value=3.8e-17  Score=129.39  Aligned_cols=85  Identities=33%  Similarity=0.506  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      .+.+|+.+++.  .+   ++++++++||.++++|.+.++++|+++|+++|++||+++|+||+++||||+|. ++++++++
T Consensus       187 ~~~le~~l~~~--~~---~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~-~~~~~~~~  260 (439)
T 3dxv_A          187 LTLLTEKLAAV--PA---GSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGR-LHCFEHEG  260 (439)
T ss_dssp             HHHHHHHHHTS--CT---TCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSS-SSGGGGTT
T ss_pred             HHHHHHHHHhc--CC---CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCch-hhHHHhcC
Confidence            35667777422  23   68999999999999999999999999999999999999999999999999998 88889998


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++++||+
T Consensus       261 --~~~di~s~sK~  271 (439)
T 3dxv_A          261 --FVPDILVLGKG  271 (439)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCCCEEEEcch
Confidence              99999999995

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.69  E-value=4.7e-17  Score=128.39  Aligned_cols=84  Identities=32%  Similarity=0.457  Sum_probs=74.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++  ++   ++++++++||.++..|...++++|+++++++|++||+++|+|||++||||+|. +++++.++ 
T Consensus       190 ~~le~~l~~~--~~---~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~-~~~~~~~~-  262 (433)
T 1zod_A          190 DYAFDLIDRQ--SS---GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDG-  262 (433)
T ss_dssp             HHHHHHHHHH--CC---SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT-
T ss_pred             HHHHHHHHhc--CC---CCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCch-HhHHhhcC-
Confidence            4567777654  22   58999999999888899999999999999999999999999999999999998 78888888 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++++||+
T Consensus       263 -~~~di~s~sK~  273 (433)
T 1zod_A          263 -VTPDILTLSKT  273 (433)
T ss_dssp             -CCCSEEEECHH
T ss_pred             -CCCCEEEeccc
Confidence             99999999994

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.68  E-value=4.3e-17  Score=130.06  Aligned_cols=82  Identities=28%  Similarity=0.329  Sum_probs=73.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+|+.++++.      ++++++++||+++++|...++++|+++|+++|++||+++|+||+++|| |+|. ++++++++ 
T Consensus       189 ~~le~~l~~~~------~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~-  259 (453)
T 2cy8_A          189 EGMREVFANHG------SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGN-HGMQALLD-  259 (453)
T ss_dssp             HHHHHHHHHHG------GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTT-TTCT-THHHHHHT-
T ss_pred             HHHHHHHHhcC------CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcccc-ccCc-hhhhHHhC-
Confidence            45677777642      589999999998888999999999999999999999999999999999 9997 88888899 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++++||+
T Consensus       260 -~~~di~s~sK~  270 (453)
T 2cy8_A          260 -VQPDLTCLAKA  270 (453)
T ss_dssp             -CCCSEEEEEGG
T ss_pred             -CCCcEEEEChh
Confidence             99999999995

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.68  E-value=8.9e-17  Score=126.99  Aligned_cols=81  Identities=26%  Similarity=0.355  Sum_probs=73.0

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++.      ++++++++||+++++|...++++|+++++++ ++||+++|+||+++|| |+|. ++++++++ 
T Consensus       187 ~~le~~l~~~~------~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~-~~g~-~~~~~~~~-  256 (424)
T 2e7u_A          187 EGLREVLKRRG------EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGF-RLAF-GGATELLG-  256 (424)
T ss_dssp             HHHHHHHHHHG------GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTT-TSST-THHHHHHT-
T ss_pred             HHHHHHHHhCC------CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcccc-ccch-hHHHHHhC-
Confidence            45777776642      5899999999999899999999999999999 9999999999999999 8997 78888999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++++||+
T Consensus       257 -~~~di~s~sK~  267 (424)
T 2e7u_A          257 -LKPDLVTLGKI  267 (424)
T ss_dssp             -CCCSEEEECGG
T ss_pred             -CCcchhhhhhh
Confidence             99999999995

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.67  E-value=1.2e-16  Score=124.53  Aligned_cols=72  Identities=31%  Similarity=0.508  Sum_probs=69.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||.++++|...++++|+++++++|++||+++|+||+++||||+|. ++++++++  +.||++|+||+
T Consensus       178 ~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~-~~~~~~~~--~~~d~~t~sK~  249 (395)
T 3nx3_A          178 EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGK-FFAYEHAQ--ILPDIMTSAKA  249 (395)
T ss_dssp             TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGG
T ss_pred             CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCc-chhHHhcC--CCCCEEEeccc
Confidence            58999999999999999999999999999999999999999999999999998 88899999  99999999995

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.66  E-value=1.8e-16  Score=126.06  Aligned_cols=72  Identities=31%  Similarity=0.493  Sum_probs=68.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++||.++.+|+++++++++++++++|++||+++|+||+++||+|+|. +++++.++  +.||+++++|+
T Consensus       200 ~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~-~~~~~~~~--~~~diit~sK~  271 (420)
T 2pb2_A          200 DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGD-LFAYMHYG--VTPDILTSAKA  271 (420)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHT--CCCSEEEECGG
T ss_pred             cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCc-HHHHHhcC--CCCCeEEeccc
Confidence            58999999999999999999999999999999999999999999999999998 88888888  99999999995

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.65  E-value=4.6e-16  Score=122.85  Aligned_cols=83  Identities=28%  Similarity=0.440  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      +.+++.++++.      ++++++++||. ++..|...++++|+++++++|++||+++|+||+++||||+|. +++++.++
T Consensus       192 ~~l~~~l~~~~------~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~-~~~~~~~~  264 (429)
T 1s0a_A          192 VGFARLMAAHR------HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE  264 (429)
T ss_dssp             HHHHHHHHHHT------TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             HHHHHHHHhCC------CCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccch-HHHhhhcC
Confidence            45666676542      58999999999 988999999999999999999999999999999999999997 77888888


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++++||+
T Consensus       265 --~~~d~~t~sK~  275 (429)
T 1s0a_A          265 --IAPDILCLGKA  275 (429)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCCCEEEeccc
Confidence              99999999995

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.65  E-value=5.2e-16  Score=122.90  Aligned_cols=85  Identities=35%  Similarity=0.591  Sum_probs=74.2

Q ss_pred             HHHH-HHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC
Q psy1628          23 LFFE-RIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e-~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g  101 (114)
                      +.++ +.++++. ++   ++++++++||.++..|...++++|+++++++|++||+++|+||+++||||+|. +++.+.++
T Consensus       197 ~~l~~~~i~~~~-~~---~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~-~~~~~~~~  271 (419)
T 2eo5_A          197 EFIEDYIFVNLV-PP---EEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGK-LFAIENFN  271 (419)
T ss_dssp             HHHHHTHHHHTC-CG---GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT
T ss_pred             HHHHHHHHhhcc-CC---CCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcc-hhhHHhcC
Confidence            4666 6666531 22   47899999999888899999999999999999999999999999999999997 77888888


Q ss_pred             CCCCcCEEEeecC
Q psy1628         102 DDIIPDIVTVVWN  114 (114)
Q Consensus       102 ~~v~PDivt~gK~  114 (114)
                        +.||++++||+
T Consensus       272 --~~~d~~t~sK~  282 (419)
T 2eo5_A          272 --TVPDVITLAKA  282 (419)
T ss_dssp             --CCCSEEEECGG
T ss_pred             --CCCCEEEeccc
Confidence              99999999995

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.45  E-value=1.2e-17  Score=137.82  Aligned_cols=99  Identities=16%  Similarity=0.123  Sum_probs=82.3

Q ss_pred             cccccchhHHHHHHH----------------HHHHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHH
Q psy1628           5 VLTECIIGRYIILLA----------------VVHLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVY   68 (114)
Q Consensus         5 ~~~~~~~~~~~~~~~----------------~~~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr   68 (114)
                      .+..|++|++...++                .-.+.+++.++++   +   ++++++++||+++++|+.+++++|+++|+
T Consensus       187 ~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~d~~~l~~~l~~~---~---~~~aavi~epv~~~~G~~~~~~~~l~~l~  260 (465)
T 2yky_A          187 AFDGGYHGGLLNFASGHAPTNAPYHVVLGVYNDVEGTADLLKRH---G---HDCAAILVEPMLGAGGCVPAERAFLDLLR  260 (465)
Confidence            456778887765441                0123455666543   2   68999999999999999999999999999


Q ss_pred             HHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          69 KHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        69 ~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++|++||+++|+|||++ | |+|. +|+++++|  +.||++|+||+
T Consensus       261 ~l~~~~g~llI~DEv~~-~-r~g~-~~a~~~~g--v~pDi~t~sK~  301 (465)
T 2yky_A          261 AEASRCGALLIFDEVMT-S-RLSG-GGAQEMLG--ISADLTTLGKY  301 (465)
Confidence            99999999999999999 7 9998 88999999  99999999995

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.57  E-value=1.4e-14  Score=113.30  Aligned_cols=85  Identities=29%  Similarity=0.437  Sum_probs=73.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+++.. .+   .++++++++|.+++.|...++++++++++++|++||+++|+||+++||+++|. +++++.++ 
T Consensus       185 ~~l~~~l~~~~-~~---~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~-  258 (426)
T 1sff_A          185 ASIHRIFKNDA-AP---EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMG-  258 (426)
T ss_dssp             HHHHHHHHHTC-CG---GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT-
T ss_pred             HHHHHHHHhcc-CC---CceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccc-hhhhhhcC-
Confidence            45666665421 12   58899999999988898999999999999999999999999999999999997 77778888 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       +.||++++||+
T Consensus       259 -~~~di~s~sK~  269 (426)
T 1sff_A          259 -VAPDLTTFAKS  269 (426)
T ss_dssp             -SCCSEEEECGG
T ss_pred             -CCCCEEEEccc
Confidence             89999999994

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.52  E-value=2.9e-14  Score=110.62  Aligned_cols=72  Identities=32%  Similarity=0.526  Sum_probs=68.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++++++++|.++..|...++++|+++++++|++||+++|+||+++||+++|. +++.+.++  +.||++++||+
T Consensus       181 ~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~--~~~d~~~~SK~  252 (392)
T 3ruy_A          181 PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGK-VFACDWDN--VTPDMYILGKA  252 (392)
T ss_dssp             TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGG
T ss_pred             cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcccc-chhhhccC--CCCCEEEEchh
Confidence            58999999999999999999999999999999999999999999999999998 88888888  99999999995

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.51  E-value=3.6e-14  Score=110.08  Aligned_cols=72  Identities=28%  Similarity=0.503  Sum_probs=68.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++++++++|..+.||+.+++.++++++.++|++||+++|+||+++||+++|. .++.+.++  +.||+++++|+
T Consensus       182 ~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~--~~~d~~t~sK~  253 (406)
T 4adb_A          182 DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGE-LYAYMHYG--VTPDLLTTAKA  253 (406)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSHHHHHT--CCCSEEEECGG
T ss_pred             CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch-hHHHHhcC--CCCCEEEechh
Confidence            58999999999999999999999999999999999999999999999999998 78888888  99999999995

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.39  E-value=9.8e-13  Score=102.34  Aligned_cols=72  Identities=33%  Similarity=0.544  Sum_probs=66.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++++++++|.++..|.+.++.++++++.++|++||+++|+||+++||+++|. .++.+.++  +.||+++++|+
T Consensus       182 ~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~-~~~~~~~~--~~~d~~s~sK~  253 (397)
T 2ord_A          182 EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGK-LFAYQKYG--VVPDVLTTAKG  253 (397)
T ss_dssp             TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSHHHHHT--CCCSEEEECGG
T ss_pred             cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCcc-chhhhhhC--CCCCeeeeccc
Confidence            57999999998888898789999999999999999999999999999999997 67777888  88999999995

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.38  E-value=1.2e-12  Score=101.57  Aligned_cols=72  Identities=32%  Similarity=0.530  Sum_probs=65.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++++++++|.++..|...+++++++++.++|++||+++|+||+++||+++|. .+..+.++  +.||+++++|+
T Consensus       184 ~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~-~~~~~~~~--~~~d~~s~sK~  255 (395)
T 1vef_A          184 EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFG--IVPDILTLAKA  255 (395)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT--CCCSEEEECGG
T ss_pred             cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCc-hhHhhhcC--CCCCEEEEccc
Confidence            47899999999888898999999999999999999999999999999999997 66777788  88999999994

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.33  E-value=4.1e-12  Score=97.47  Aligned_cols=72  Identities=24%  Similarity=0.439  Sum_probs=65.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++++++++|.++..|...+++++++++.++|++||+++|.||+++||++++. .+..+.++  ..||++++||.
T Consensus       171 ~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~--~~~d~~s~SK~  242 (375)
T 2eh6_A          171 EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE-FYAYQHFN--LKPDVIALAKG  242 (375)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGG
T ss_pred             CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCc-chhhhhcC--CCCCEEEEccc
Confidence            57899999998888899999999999999999999999999999999999986 56677777  88999999994

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=99.17  E-value=6.7e-11  Score=93.15  Aligned_cols=81  Identities=12%  Similarity=0.133  Sum_probs=62.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhh---
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQL---   99 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~---   99 (114)
                      +.+++.+.+        .+++++++++.++..| ..++++++++++++|++||+++|+||++++|+++|.....+..   
T Consensus       184 ~~le~~i~~--------~~~~~vil~~p~nptG-~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  254 (421)
T 3l8a_A          184 EQLEKDIID--------NNVKIYLLCSPHNPGG-RVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDA  254 (421)
T ss_dssp             HHHHHHHHH--------TTEEEEEEESSBTTTT-BCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCT
T ss_pred             HHHHHHhhc--------cCCeEEEECCCCCCCC-CcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCc
Confidence            456666654        4789999999998888 6677788999999999999999999999999998852222222   


Q ss_pred             --cCCCCCcCEEEeecC
Q psy1628         100 --QGDDIIPDIVTVVWN  114 (114)
Q Consensus       100 --~g~~v~PDivt~gK~  114 (114)
                        .+  ..+++.+++|+
T Consensus       255 ~~~~--~~i~~~s~sK~  269 (421)
T 3l8a_A          255 SYKD--FTIILSSATKT  269 (421)
T ss_dssp             TGGG--TEEEEECSHHH
T ss_pred             hhcC--cEEEEEeChhh
Confidence              23  55778888883

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=98.98  E-value=1.2e-09  Score=85.24  Aligned_cols=76  Identities=18%  Similarity=0.183  Sum_probs=60.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc--ccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG--FGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG--fgRtG~~~~~~~~~  100 (114)
                      +.+++.++++        +.+++++++.++..|...+    +++++++|++||+++|.||++++  +|++|. .+. +.+
T Consensus       176 ~~le~~l~~~--------~~~~vi~~~~~nptG~~~~----l~~l~~la~~~~~~li~De~~~~g~~g~~g~-~~~-~~~  241 (409)
T 3kki_A          176 DHLRMLIQRH--------GPGIIVVDSIYSTLGTIAP----LAELVNISKEFGCALLVDESHSLGTHGPNGA-GLL-AEL  241 (409)
T ss_dssp             HHHHHHHHHH--------CSCEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CHH-HHH
T ss_pred             HHHHHHHHhc--------CCeEEEECCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-cch-hhc
Confidence            4567777663        3589999999988887666    99999999999999999999999  899987 444 556


Q ss_pred             CCCC--CcCE--EEeecC
Q psy1628         101 GDDI--IPDI--VTVVWN  114 (114)
Q Consensus       101 g~~v--~PDi--vt~gK~  114 (114)
                      +  +  .||+  .+++|+
T Consensus       242 ~--~~~~~di~~~s~sK~  257 (409)
T 3kki_A          242 G--LTREVHFMTASLAKT  257 (409)
T ss_dssp             T--CGGGCSEEEEESSST
T ss_pred             C--CCCCCCEEEeecchh
Confidence            6  5  5788  666774

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=98.94  E-value=2.6e-09  Score=84.56  Aligned_cols=79  Identities=19%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc--cccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF--GRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf--gRtG~~~~~~~~~  100 (114)
                      +.+++.++++.  +   ++++++++||.++..|...+    +++|+++|++||+++|+||+++++  +++|. . ..+.+
T Consensus       181 ~~le~~l~~~~--~---~~~~~v~~~~~~n~tG~~~~----l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~-~-~~~~~  249 (427)
T 2w8t_A          181 EDLDKRLGRLP--K---EPAKLVVLEGVYSMLGDIAP----LKEMVAVAKKHGAMVLVDEAHSMGFFGPNGR-G-VYEAQ  249 (427)
T ss_dssp             HHHHHHHHTSC--S---SSCEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC-C-HHHHT
T ss_pred             HHHHHHHHhcc--C---CCCeEEEEcCCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccccCCCCC-c-hHhhc
Confidence            45777777642  1   38999999999987887765    899999999999999999999985  55665 3 45667


Q ss_pred             CCCCCcC----EEEeecC
Q psy1628         101 GDDIIPD----IVTVVWN  114 (114)
Q Consensus       101 g~~v~PD----ivt~gK~  114 (114)
                      +  +.||    +.+++|.
T Consensus       250 ~--~~~~~di~~~s~sK~  265 (427)
T 2w8t_A          250 G--LEGQIDFVVGTFSKS  265 (427)
T ss_dssp             T--CTTCCSEEEEESSST
T ss_pred             C--CCcCCcEEEecchhh
Confidence            7  7888    7888884

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=98.75  E-value=1.8e-08  Score=77.35  Aligned_cols=80  Identities=20%  Similarity=0.190  Sum_probs=61.7

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc-ccc-cccCccchhhhhcC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ-VGF-GRVGTHWWAFQLQG  101 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGf-gRtG~~~~~~~~~g  101 (114)
                      .+++.++++...+   .+++++++++.++..|...+    ++++.++|++||+++|.||++ .|+ +++|.  +..+.++
T Consensus       161 ~l~~~l~~~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~--~~~~~~~  231 (399)
T 3tqx_A          161 DLEAKLKEADEKG---ARFKLIATDGVFSMDGIIAD----LKSICDLADKYNALVMVDDSHAVGFIGENGR--GTPEYCG  231 (399)
T ss_dssp             HHHHHHHHHHTTT---CSSEEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSSTTSC--CHHHHHT
T ss_pred             HHHHHHHhhhccC---CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCccccccCCCCC--chHHhhC
Confidence            5666666542011   38999999999888887766    899999999999999999999 676 66765  3456666


Q ss_pred             CCC--CcCEE--EeecC
Q psy1628         102 DDI--IPDIV--TVVWN  114 (114)
Q Consensus       102 ~~v--~PDiv--t~gK~  114 (114)
                        +  .||++  +++|+
T Consensus       232 --~~~~~di~~~s~sK~  246 (399)
T 3tqx_A          232 --VADRVDILTGTLGKA  246 (399)
T ss_dssp             --CTTCCSEEEEESSSS
T ss_pred             --CCCCCcEEEecchHh
Confidence              6  88999  77774

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=98.67  E-value=4e-08  Score=75.33  Aligned_cols=71  Identities=13%  Similarity=0.105  Sum_probs=57.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++.++++++.++..|. ..++++++++.++|++||+++|.||++++|++.+. ....+.++  ..+++.+++|+
T Consensus       153 ~~~~~v~~~~~~nptG~-~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~-~~~~~~~~--~~i~~~s~sK~  223 (375)
T 3op7_A          153 PTTKMICINNANNPTGA-VMDRTYLEELVEIASEVGAYILSDEVYRSFSELDV-PSIIEVYD--KGIAVNSLSKT  223 (375)
T ss_dssp             TTCCEEEEESSCTTTCC-CCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCC-CCHHHHCT--TEEEEEESSSS
T ss_pred             cCCeEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccccccccCC-CchhhhcC--CEEEEeEChhh
Confidence            46788999987776675 45788899999999999999999999999987743 33445566  77888899985

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=98.66  E-value=1.1e-07  Score=73.06  Aligned_cols=78  Identities=22%  Similarity=0.279  Sum_probs=59.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cc-cccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GF-GRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-Gf-gRtG~~~~~~~~~  100 (114)
                      +.+++.+++..      .+.+++++++.++..|...+    ++++.++|++||+++|.||++. |+ +++|. .+. +.+
T Consensus       156 ~~l~~~l~~~~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~~~~~-~~~-~~~  223 (384)
T 1bs0_A          156 THLARLLASPC------PGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR-GSC-WLQ  223 (384)
T ss_dssp             HHHHHHHHSCC------SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC-CHH-HHT
T ss_pred             HHHHHHHHhcC------CCCeEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCcccceecCCCC-chH-Hhc
Confidence            45677776531      34789999988887787765    7899999999999999999984 64 66776 333 556


Q ss_pred             CCCCCcCEE--EeecC
Q psy1628         101 GDDIIPDIV--TVVWN  114 (114)
Q Consensus       101 g~~v~PDiv--t~gK~  114 (114)
                      +  ..||++  +++|.
T Consensus       224 ~--~~~di~~~s~sK~  237 (384)
T 1bs0_A          224 K--VKPELLVVTFGKG  237 (384)
T ss_dssp             T--CCCSEEEEESSST
T ss_pred             C--CCCcEEEeeccch
Confidence            6  779999  77774

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=98.65  E-value=6e-08  Score=74.23  Aligned_cols=72  Identities=4%  Similarity=-0.143  Sum_probs=51.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcC----EEEeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD----IVTVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PD----ivt~gK  113 (114)
                      .++.+++++..++..|.. .+++.++++.++|++||+++|+||++++|.+.|........++ .-.||    +.+++|
T Consensus       159 ~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~-~~~~d~~i~~~s~sK  234 (391)
T 3dzz_A          159 PSVRMMVFCNPHNPIGYA-WSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVD-WDAKNWVVSLISPSK  234 (391)
T ss_dssp             TTEEEEEEESSBTTTTBC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSC-TTTGGGEEEEECSHH
T ss_pred             cCceEEEEECCCCCCCcc-cCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcC-ccccCcEEEEEeChh
Confidence            367777777666666754 4667799999999999999999999999988885233444433 01278    445566

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=98.64  E-value=6.6e-08  Score=76.12  Aligned_cols=52  Identities=17%  Similarity=0.089  Sum_probs=44.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++++.+...|. ..+.+.++++.++|++||+++|+||++++++++|.
T Consensus       190 ~~~~~v~i~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~  241 (435)
T 3piu_A          190 LRVKGVLVTNPSNPLGT-TMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSP  241 (435)
T ss_dssp             CCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSS
T ss_pred             CCeEEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEeccccccccCCC
Confidence            47888888877666675 55677899999999999999999999999877776

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=98.60  E-value=2.4e-07  Score=71.74  Aligned_cols=79  Identities=25%  Similarity=0.376  Sum_probs=58.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~  100 (114)
                      ..+++.+++..  +   ++++++++++.++..|...+    ++++.++|++||+++|+||+++ | ||++|. .+. ..+
T Consensus       165 ~~le~~l~~~~--~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~-~~~-~~~  233 (401)
T 2bwn_A          165 AHLRELIAADD--P---AAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHAVGMYGPRGA-GVA-ERD  233 (401)
T ss_dssp             HHHHHHHHHSC--T---TSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSTTSC-CHH-HHH
T ss_pred             HHHHHHHHhhc--c---CCceEEEEecCcCCCCCcCC----HHHHHHHHHHcCCEEEEeccccccccCCCCc-eee-ecc
Confidence            45677776541  1   47889999999888787765    7999999999999999999999 3 577776 343 445


Q ss_pred             CCCC--CcCEE--EeecC
Q psy1628         101 GDDI--IPDIV--TVVWN  114 (114)
Q Consensus       101 g~~v--~PDiv--t~gK~  114 (114)
                      +  +  .+|++  +++|+
T Consensus       234 ~--~~~~~~i~~~s~sK~  249 (401)
T 2bwn_A          234 G--LMHRIDIFNGTLAKA  249 (401)
T ss_dssp             T--CGGGCSEEEEESSST
T ss_pred             C--ccccCcEEEeechhh
Confidence            5  4  34554  67774

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=98.59  E-value=8.9e-08  Score=73.99  Aligned_cols=81  Identities=20%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc-ccc-cccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ-VGF-GRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGf-gRtG~~~~~~~~~  100 (114)
                      +.+++.+++.....   .+++++++++.++..|...+    ++++.++|++||+++|+||++ +|+ +++|. .+ .+.+
T Consensus       162 ~~l~~~l~~~~~~~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~~~~g~-~~-~~~~  232 (401)
T 1fc4_A          162 QELEARLKEAREAG---ARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFVGENGR-GS-HEYC  232 (401)
T ss_dssp             HHHHHHHHHHHHTT---CSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTSSTTSC-CH-HHHT
T ss_pred             HHHHHHHHHhhccC---CCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cc-HHHc
Confidence            45666665431000   27899999998887787765    899999999999999999999 598 46786 43 3445


Q ss_pred             CCCCCc--CEE--EeecC
Q psy1628         101 GDDIIP--DIV--TVVWN  114 (114)
Q Consensus       101 g~~v~P--Div--t~gK~  114 (114)
                      +  +.|  |++  +++|.
T Consensus       233 ~--~~~~~di~~~s~sK~  248 (401)
T 1fc4_A          233 D--VMGRVDIITGTLGKA  248 (401)
T ss_dssp             T--CTTCCSEEEEESSST
T ss_pred             C--CCcCCcEEEecchhh
Confidence            6  554  888  67774

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=98.58  E-value=2e-07  Score=73.69  Aligned_cols=71  Identities=8%  Similarity=0.005  Sum_probs=54.0

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEE---EeecC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV---TVVWN  114 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDiv---t~gK~  114 (114)
                      +..++++...+...|. .++++.++++.++|+++|+++|+||++++|+++|..+.....++  ..++++   +++|.
T Consensus       191 ~~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~--~~~~vi~~~S~sK~  264 (427)
T 3dyd_A          191 KTACLIVNNPSNPCGS-VFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLS--TDVPILSCGGLAKR  264 (427)
T ss_dssp             TEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGC--SSCCEEEEEESTTT
T ss_pred             CCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhC--CCCcEEEEeecccc
Confidence            4555555544555665 56788899999999999999999999999998886333555666  667777   67774

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=98.57  E-value=4e-07  Score=70.43  Aligned_cols=74  Identities=5%  Similarity=-0.123  Sum_probs=51.5

Q ss_pred             CceEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC-CCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQ-SCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD-DIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~-g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~-~v~PDivt~gK~  114 (114)
                      .++.++++.|.. ...|. ..+.++++++.++|++||+++|+||+++++.++|........++. +...++.+++|.
T Consensus       173 ~~~~~v~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  248 (407)
T 2zc0_A          173 QKVKLIYTIPTGQNPMGV-TMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKV  248 (407)
T ss_dssp             CCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTT
T ss_pred             CCceEEEECCCCCCCCCc-CCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccc
Confidence            377887666654 44565 467899999999999999999999999999777652223333330 022356667774

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=98.57  E-value=1e-07  Score=74.60  Aligned_cols=71  Identities=13%  Similarity=-0.027  Sum_probs=54.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCcc---chhhh-hcCCCCCcCEEEeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTH---WWAFQ-LQGDDIIPDIVTVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~---~~~~~-~~g~~v~PDivt~gK  113 (114)
                      .++++++++..++..|.. .++++++++.++|++||+++|+||++++|.++|..   +.... .++  ..+++.+++|
T Consensus       181 ~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~~~~~s~sK  255 (429)
T 1yiz_A          181 EKTKMIIINTPHNPLGKV-MDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWE--RTITIGSAGK  255 (429)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGG--GEEEEEEHHH
T ss_pred             cCceEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcC--ceEEEecchh
Confidence            478899998877767755 56889999999999999999999999999877641   11221 234  5666777777

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=98.56  E-value=7.7e-08  Score=73.43  Aligned_cols=80  Identities=11%  Similarity=0.017  Sum_probs=54.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC-c---cchhhh
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG-T---HWWAFQ   98 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG-~---~~~~~~   98 (114)
                      +.+++.+.+        +..+.++..| +...|. ..+.+.++++.++|++||+++|+||++++|.++| .   .+++.+
T Consensus       141 ~~l~~~l~~--------~~~~v~i~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~  210 (377)
T 3fdb_A          141 HDVEKGFQA--------GARSILLCNP-YNPLGM-VFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDT  210 (377)
T ss_dssp             HHHHHHHHT--------TCCEEEEESS-BTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHH
T ss_pred             HHHHHHhcc--------CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHcc
Confidence            455666654        2335556666 555565 4566779999999999999999999999998888 2   133333


Q ss_pred             hcCCCCCcCEEEeecC
Q psy1628          99 LQGDDIIPDIVTVVWN  114 (114)
Q Consensus        99 ~~g~~v~PDivt~gK~  114 (114)
                      ..+  ..+++.+++|+
T Consensus       211 ~~~--~~i~~~s~sK~  224 (377)
T 3fdb_A          211 AAS--VCITITAPSKA  224 (377)
T ss_dssp             HHH--HEEEEECSTTT
T ss_pred             CCC--cEEEEEeChHh
Confidence            333  44566677774

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=98.52  E-value=4.4e-07  Score=70.18  Aligned_cols=79  Identities=15%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-c-ccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-G-FGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~~~~~~~~  100 (114)
                      +.+++.++++.  +   ++++++++++.++..|...+    ++++.++|++||+++|.||++. | +++++. .+ .+.+
T Consensus       160 ~~l~~~l~~~~--~---~~~~~v~~~~~~nptG~~~~----~~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~-~~~~  228 (398)
T 3a2b_A          160 EDLRAKLSRLP--E---DSAKLICTDGIFSMEGDIVN----LPELTSIANEFDAAVMVDDAHSLGVIGHKGA-GT-ASHF  228 (398)
T ss_dssp             HHHHHHHHTSC--S---SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTTTTTSSGGGC-CH-HHHH
T ss_pred             HHHHHHHHhhc--c---CCceEEEEeCCCCCCCCccC----HHHHHHHHHHcCcEEEEECCCcccccCCCCC-ch-Hhhc
Confidence            45677776541  1   27899999999887776654    8999999999999999999996 4 456665 33 4445


Q ss_pred             CCCCC--cCEE--EeecC
Q psy1628         101 GDDII--PDIV--TVVWN  114 (114)
Q Consensus       101 g~~v~--PDiv--t~gK~  114 (114)
                      +  +.  ||++  +++|.
T Consensus       229 ~--~~~~~di~~~s~sK~  244 (398)
T 3a2b_A          229 G--LNDDVDLIMGTFSKS  244 (398)
T ss_dssp             T--CGGGCSEEEEESSST
T ss_pred             C--CCcCCeEEEeccccc
Confidence            5  54  7899  77774

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=98.51  E-value=3.5e-07  Score=71.04  Aligned_cols=81  Identities=12%  Similarity=0.028  Sum_probs=54.3

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC---ccchhhhhc
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG---THWWAFQLQ  100 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG---~~~~~~~~~  100 (114)
                      .+++.+.++.      .+..++++...+...| ...+.++++++.++|++||+++|+||++++|+++|   . .++...+
T Consensus       172 ~l~~~l~~~~------~~~~~v~~~~p~nptG-~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~-~~~~~~~  243 (412)
T 1ajs_A          172 GFLSDLENAP------EFSIFVLHACAHNPTG-TDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKD-AWAIRYF  243 (412)
T ss_dssp             HHHHHHHHSC------TTCEEEEESSSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHH-THHHHHH
T ss_pred             HHHHHHHhCC------CCcEEEEECCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCccccc-chHHHHH
Confidence            4566665541      3444554333333334 36788999999999999999999999999998886   4 4455544


Q ss_pred             CCCCCcC----EEEeecC
Q psy1628         101 GDDIIPD----IVTVVWN  114 (114)
Q Consensus       101 g~~v~PD----ivt~gK~  114 (114)
                      .  ..+|    +.+++|+
T Consensus       244 ~--~~~~~~i~~~s~sK~  259 (412)
T 1ajs_A          244 V--SEGFELFCAQSFSKN  259 (412)
T ss_dssp             H--HTTCCEEEEEECTTT
T ss_pred             h--ccCCcEEEEEecccc
Confidence            3  3455    5566773

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=98.49  E-value=4.3e-07  Score=71.69  Aligned_cols=81  Identities=14%  Similarity=0.010  Sum_probs=57.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc----------ccccC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG----------FGRVG   91 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG----------fgRtG   91 (114)
                      +.+++.+.+..  +   .++++++++ |..+..| ...+.++++++.++|++||+++|.||+++.          +.+.|
T Consensus       161 ~~l~~~i~~~t--~---~~~~~v~l~~p~n~ptG-~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g  234 (456)
T 2ez2_A          161 KKLQKLIDEKG--A---ENIAYICLAVTVNLAGG-QPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFEN  234 (456)
T ss_dssp             HHHHHHHHHHC--G---GGEEEEEEESSBTTTTS-BCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTT
T ss_pred             HHHHHHHHhcc--c---cceeEEEEeccCCCCCC-ccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCC
Confidence            45666665531  1   468999999 5554567 577899999999999999999999999985          44566


Q ss_pred             ccchh-h-hhcCCCCCcCEEEee
Q psy1628          92 THWWA-F-QLQGDDIIPDIVTVV  112 (114)
Q Consensus        92 ~~~~~-~-~~~g~~v~PDivt~g  112 (114)
                      . .+. . +..+  ..+|+++++
T Consensus       235 ~-~~~~~~~~~~--~~~d~~~~S  254 (456)
T 2ez2_A          235 K-SIAEIVHEMF--SYADGCTMS  254 (456)
T ss_dssp             S-CHHHHHHHHH--TTCSEEEEE
T ss_pred             c-chhhhhhhhc--ccCCEEEEe
Confidence            5 221 1 1234  457999885

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=98.49  E-value=6.7e-07  Score=70.66  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=48.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.+.++.  +   .++++++++|.++..|..+++.+++++++++|++||+++|.||++.
T Consensus       170 ~~le~~i~~~~--~---~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~  227 (467)
T 1ax4_A          170 KKLKENIAQHG--A---DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF  227 (467)
T ss_dssp             HHHHHHHHHHC--G---GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             HHHHHHHHhcC--C---CCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhh
Confidence            45677776541  1   4799999999988775678889999999999999999999999876

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=98.46  E-value=4.4e-07  Score=71.09  Aligned_cols=52  Identities=12%  Similarity=-0.017  Sum_probs=42.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++...+...|.. .+.++++++.++|++||+++|+||++++|.+.|.
T Consensus       187 ~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~  238 (428)
T 1iay_A          187 IKVKGLILTNPSNPLGTT-LDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTP  238 (428)
T ss_dssp             CCEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSS
T ss_pred             CceEEEEEcCCCCCCCCc-CCHHHHHHHHHHHHHCCeEEEEeccccccccCCC
Confidence            478887776544445654 5889999999999999999999999999876654

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=98.45  E-value=8.7e-07  Score=71.00  Aligned_cols=72  Identities=10%  Similarity=-0.045  Sum_probs=54.2

Q ss_pred             CceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCcc---chhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTH---WWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~---~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++.++++.|...+ .|. ..+.+.++++.++|++||+++|.||+++++.+.|..   +++.+..+  ...++.+++|.
T Consensus       215 ~~~k~v~~~~~~~NPtG~-~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~--~vi~~~S~SK~  290 (448)
T 3aow_A          215 KKVKVVYTVPTFQNPAGV-TMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEG--RVIYLGTFSKI  290 (448)
T ss_dssp             CCEEEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTS--CEEEEEESTTT
T ss_pred             CCCeEEEECCCCCCCcCC-CCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCC--CEEEEccchhh
Confidence            37888878887555 454 478899999999999999999999999999776641   22333333  55678888884

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=98.43  E-value=4.1e-07  Score=69.93  Aligned_cols=70  Identities=13%  Similarity=-0.018  Sum_probs=52.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc--cCccchhhhhcCCCCCcCEEEeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR--VGTHWWAFQLQGDDIIPDIVTVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR--tG~~~~~~~~~g~~v~PDivt~gK  113 (114)
                      .++.+++++..+...|.. .+.++++++.++|++||+++|+||++++|..  .+..++.. .++  ..+++.+++|
T Consensus       151 ~~~~~v~~~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~--~~~~~~s~sK  222 (381)
T 1v2d_A          151 PRTRALLLNTPMNPTGLV-FGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APE--RTFTVGSAGK  222 (381)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTT--TEEEEEEHHH
T ss_pred             cCCEEEEECCCCCCCCCc-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCC--CEEEEeechh
Confidence            478889988766666765 5679999999999999999999999999843  33212222 345  7777888887

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=98.43  E-value=5.8e-07  Score=69.44  Aligned_cols=52  Identities=15%  Similarity=0.147  Sum_probs=45.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.+++++..+...|... +++.++++.++|++||+++|+||++++|.++|.
T Consensus       166 ~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~  217 (410)
T 3e2y_A          166 SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDEVYEWLVYTGH  217 (410)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC
T ss_pred             CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCC
Confidence            5788999997776667554 777899999999999999999999999988885

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=98.42  E-value=5.5e-07  Score=69.49  Aligned_cols=52  Identities=15%  Similarity=0.053  Sum_probs=42.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++...+...|. ..|+++++++.++|++||+++|+||++++|.++|.
T Consensus       163 ~~~~~v~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~  214 (399)
T 1c7n_A          163 KNNKALLFCSPHNPVGR-VWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGY  214 (399)
T ss_dssp             TTEEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTC
T ss_pred             CCCcEEEEcCCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            36777777444444565 46788999999999999999999999999987774

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=98.41  E-value=6.7e-07  Score=69.48  Aligned_cols=52  Identities=19%  Similarity=0.146  Sum_probs=44.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.+++++..+...|... +++.++++.++|++||+++|.||++++|.++|.
T Consensus       173 ~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~  224 (422)
T 3fvs_A          173 SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEVYQWMVYDGH  224 (422)
T ss_dssp             TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC
T ss_pred             CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEccchhhccCCC
Confidence            4788888887766667655 888999999999999999999999999988875

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.41  E-value=1e-06  Score=69.23  Aligned_cols=74  Identities=9%  Similarity=-0.088  Sum_probs=50.0

Q ss_pred             CceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC-CCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD-DIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~-~v~PDivt~gK~  114 (114)
                      .+++++++.|.+.+ .|. ..+.++++++.++|++||+++|.||++++|.+.|........++. +....+.+++|.
T Consensus       186 ~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~  261 (425)
T 1vp4_A          186 KQVKFIYVVSNFHNPAGV-TTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKV  261 (425)
T ss_dssp             GGEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTT
T ss_pred             CCceEEEECCCCCCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccc
Confidence            37888766665444 454 467899999999999999999999999999877752223333320 022234566774

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.41  E-value=5.8e-07  Score=69.32  Aligned_cols=51  Identities=14%  Similarity=0.046  Sum_probs=41.1

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      ++.++++...+...|.. .+.++++++.++|++||+++|+||++++|.++|.
T Consensus       162 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~  212 (390)
T 1d2f_A          162 ECKIMLLCSPQNPTGKV-WTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ  212 (390)
T ss_dssp             TEEEEEEESSCTTTCCC-CCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS
T ss_pred             CCeEEEEeCCCCCCCcC-cCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            67777764334445655 5668999999999999999999999999988775

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=98.40  E-value=6.4e-07  Score=67.39  Aligned_cols=82  Identities=9%  Similarity=0.009  Sum_probs=54.2

Q ss_pred             HHHHHHHHhcC-CCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc--cccCccchhhhh
Q psy1628          23 LFFERIFLSAS-LYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF--GRVGTHWWAFQL   99 (114)
Q Consensus        23 ~~~e~~~~~~~-~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf--gRtG~~~~~~~~   99 (114)
                      +.+++.+++.. ..+   .++.++++++. +..|... +.++++++.++|++||+++|+||++++|  ++++. ....-.
T Consensus       129 ~~l~~~l~~~~~~~~---~~~~~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~  202 (359)
T 1svv_A          129 ADIESALHENRSEHM---VIPKLVYISNT-TEVGTQY-TKQELEDISASCKEHGLYLFLDGARLASALSSPVN-DLTLAD  202 (359)
T ss_dssp             HHHHHHHHHSCSTTS---CEEEEEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTC-CCCHHH
T ss_pred             HHHHHHHHHHHhccC---CCceEEEEEcC-CCCceec-CHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCc-chhhhh
Confidence            45666666530 011   36899999886 5556554 4699999999999999999999999776  55553 111111


Q ss_pred             cCCCCCcCEEEee
Q psy1628         100 QGDDIIPDIVTVV  112 (114)
Q Consensus       100 ~g~~v~PDivt~g  112 (114)
                      .+  ..+|+++++
T Consensus       203 ~~--~~~d~~~~s  213 (359)
T 1svv_A          203 IA--RLTDMFYIG  213 (359)
T ss_dssp             HH--HHCSEEEEE
T ss_pred             hh--hcCCEEEEe
Confidence            11  246887764

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=98.40  E-value=6.8e-07  Score=71.11  Aligned_cols=62  Identities=16%  Similarity=0.042  Sum_probs=50.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEE--Eeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV--TVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDiv--t~gK  113 (114)
                      .+++++++|+.++..|.+.+    ++++.++|++||+++|+||++++++..+. .+     +  ..+|++  +++|
T Consensus       143 ~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~~~~g~~~~-~~-----~--~~~Di~~~s~~K  206 (421)
T 2ctz_A          143 EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTFGMGGYLLR-PL-----A--WGAALVTHSLTK  206 (421)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGGGGTSCC-GG-----G--GTCSEEEEETTT
T ss_pred             cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcccccccCC-cc-----c--cCCeEEEECCcc
Confidence            57899999999888787666    89999999999999999999977876665 32     2  447988  5556

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.40  E-value=9.7e-07  Score=68.90  Aligned_cols=70  Identities=14%  Similarity=0.002  Sum_probs=52.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCC-CcCEE--EeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDI-IPDIV--TVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v-~PDiv--t~gK~  114 (114)
                      .++.+++++..+...|.. .++++++++.++|++||+++|.||+++++.++|. .++. ..+  . ..|++  +++|.
T Consensus       173 ~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~-~~~~-~~~--~~~~~i~~~s~sK~  245 (409)
T 2gb3_A          173 ERTKGIVLSNPCNPTGVV-YGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE-FASA-LSI--ESDKVVVIDSVSKK  245 (409)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC-CCCG-GGS--CCTTEEEEEESTTT
T ss_pred             cCCeEEEECCCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEECcccccccCCC-CCCc-ccc--CCCCEEEEecchhc
Confidence            467888888766666765 4679999999999999999999999999987775 4443 222  3 34766  45663

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=98.39  E-value=5.3e-07  Score=69.43  Aligned_cols=70  Identities=11%  Similarity=0.194  Sum_probs=47.0

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC---CCCCcCEEEeecC
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG---DDIIPDIVTVVWN  114 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g---~~v~PDivt~gK~  114 (114)
                      +.++..| +...|. ..+.+.++++.++|++||+++|+||++++|.++|........++   .+...++.+++|+
T Consensus       182 ~v~~~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~  254 (407)
T 3nra_A          182 VFLFSNP-NNPAGV-VYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKT  254 (407)
T ss_dssp             EEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSST
T ss_pred             EEEEcCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccc
Confidence            3344555 544564 55788999999999999999999999999988776222222221   0133445566774

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=98.37  E-value=5.3e-07  Score=69.85  Aligned_cols=61  Identities=16%  Similarity=0.117  Sum_probs=45.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      +.+++.+++        .++.++++-|. +...|. ..+.++++++.++|++||+++|.||++++|.++|.
T Consensus       152 ~~l~~~l~~--------~~~~~v~~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~  213 (397)
T 2zyj_A          152 DALEEVLKR--------ERPRFLYLIPSFQNPTGG-LTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEA  213 (397)
T ss_dssp             HHHHHHHHH--------CCCSCEEECCBSCTTTCC-BCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSC
T ss_pred             HHHHHHHhh--------cCCeEEEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCC
Confidence            345666654        24556655444 333464 46788999999999999999999999999987775

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=98.37  E-value=5.8e-07  Score=68.61  Aligned_cols=80  Identities=13%  Similarity=0.071  Sum_probs=57.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCeEEEccccccccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA--GGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~--gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      +.+++.+.++        ++.+++++..+...|... +.+.++++.++|++|  |+++|+||++++|+..+. ......+
T Consensus       147 ~~l~~~l~~~--------~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~  216 (367)
T 3euc_A          147 GAMLAAMAEH--------QPAIVYLAYPNNPTGNLF-DAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESW-MSRLTDF  216 (367)
T ss_dssp             HHHHHHHHHH--------CCSEEEEESSCTTTCCCC-CHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCS-GGGGGTC
T ss_pred             HHHHHHhhcc--------CCCEEEEcCCCCCCCCCC-CHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccch-HHHHhhC
Confidence            3456666552        556777776565566544 667899999999999  999999999999976554 4444444


Q ss_pred             CCCCCcCEEEeecC
Q psy1628         101 GDDIIPDIVTVVWN  114 (114)
Q Consensus       101 g~~v~PDivt~gK~  114 (114)
                      +  ...++.+++|.
T Consensus       217 ~--~~i~~~s~sK~  228 (367)
T 3euc_A          217 G--NLLVMRTVSKL  228 (367)
T ss_dssp             T--TEEEEEECCCT
T ss_pred             C--CEEEEecchhh
Confidence            4  55677788884

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=98.37  E-value=4.1e-07  Score=71.90  Aligned_cols=58  Identities=16%  Similarity=0.054  Sum_probs=47.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+|+.++++.  +   +++++++++|.++..|..+++.+++++++++|++||+++|.|+.+.
T Consensus       170 ~~Le~~i~~~~--~---~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~  227 (467)
T 2oqx_A          170 EGLERGIEEVG--P---NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             HHHHHHHHHHC--G---GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             HHHHHHHHhcC--C---CceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence            45677776541  1   4799999999988765578899999999999999999999996654

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=98.36  E-value=8.1e-07  Score=68.43  Aligned_cols=62  Identities=13%  Similarity=0.042  Sum_probs=46.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +.+++.++++   +   .+.+++++...+...|. ..+.++++++.++|++||+++|.||++++|+++|
T Consensus       157 ~~l~~~l~~~---~---~~~~~~~~~~~~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~  218 (394)
T 2ay1_A          157 EGMKADLAAA---K---KGDMVLLHGCCHNPTGA-NLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL  218 (394)
T ss_dssp             HHHHHHHHTC---C---TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCH
T ss_pred             HHHHHHHHhC---C---CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecCccccccCc
Confidence            3456666543   1   34556665655555564 5788999999999999999999999999998764

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=98.35  E-value=8.6e-07  Score=70.50  Aligned_cols=72  Identities=10%  Similarity=-0.021  Sum_probs=55.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc--cchhh--hhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT--HWWAF--QLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~--~~~~~--~~~g~~v~PDivt~gK~  114 (114)
                      .++.+++++..+...|.. .+++.++++.++|++||+++|.||++++|.++|.  .+...  ..++  ..+++.+++|+
T Consensus       200 ~~~~~v~l~~p~nptG~~-~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~i~i~S~sK~  275 (447)
T 3b46_A          200 SKTKAVIINTPHNPIGKV-FTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQ--LTLTVGSAGKS  275 (447)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHT--TEEEEEEHHHH
T ss_pred             cCCeEEEEeCCCCCCCcc-cCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCC--cEEEEecCchh
Confidence            478888888766666765 5689999999999999999999999999987763  12222  2345  66777788873

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=98.35  E-value=8.4e-07  Score=69.16  Aligned_cols=52  Identities=21%  Similarity=0.084  Sum_probs=44.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.+++++..++..|.. .+.++++++.++|++||+++|+||+++++.++|.
T Consensus       159 ~~~~~v~l~~~~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~  210 (411)
T 2o0r_A          159 PRTRALIINSPHNPTGAV-LSATELAAIAEIAVAANLVVITDEVYEHLVFDHA  210 (411)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred             cCceEEEEeCCCCCCCCC-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            467888888766666755 5688999999999999999999999999987764

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=98.33  E-value=7.1e-07  Score=68.63  Aligned_cols=81  Identities=12%  Similarity=0.007  Sum_probs=51.5

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC--ccchhhhhcC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG--THWWAFQLQG  101 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG--~~~~~~~~~g  101 (114)
                      .+++.+.++.      .+..++++...+...|. ..+.++++++.++|++||+++|.||++++|++.|  . .+....+.
T Consensus       161 ~l~~~l~~~~------~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~-~~~~~~~~  232 (396)
T 2q7w_A          161 ALINSLNEAQ------AGDVVLFHGCCHNPTGI-DPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEED-AEGLRAFA  232 (396)
T ss_dssp             HHHHHHTTCC------TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHH-THHHHHHH
T ss_pred             HHHHHHHhCC------CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCccch-hHHHHHHH
Confidence            4555555431      23444444333333454 6778999999999999999999999999998764  3 34444333


Q ss_pred             CCCCcC----EEEeecC
Q psy1628         102 DDIIPD----IVTVVWN  114 (114)
Q Consensus       102 ~~v~PD----ivt~gK~  114 (114)
                        ..+|    +.+++|+
T Consensus       233 --~~~~~~i~~~s~sK~  247 (396)
T 2q7w_A          233 --AMHKELIVASSYSXN  247 (396)
T ss_dssp             --HHCSCEEEEEECTTT
T ss_pred             --hcCCcEEEEEecccc
Confidence              2334    4455663

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=97.67  E-value=6.6e-08  Score=75.01  Aligned_cols=71  Identities=10%  Similarity=0.102  Sum_probs=52.3

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCcc---chhhhh--cCCCCCcCEEEeecC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTH---WWAFQL--QGDDIIPDIVTVVWN  114 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~---~~~~~~--~g~~v~PDivt~gK~  114 (114)
                      ++.++++...+...|. ..++++++++.++|++||+++|+||++++|.++|..   +++...  .+  ..+++.+++|+
T Consensus       164 ~~~~v~~~~~~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~--~~i~~~s~sK~  239 (392)
T 3b1d_A          164 DVKLYLLCNPHNPGGR-VWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKD--FALVLSSATKT  239 (392)
Confidence            5667777554544565 466779999999999999999999999999887731   333322  34  56778888884

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=98.32  E-value=1.2e-06  Score=67.43  Aligned_cols=72  Identities=10%  Similarity=-0.088  Sum_probs=53.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCcc---chhhh--hcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTH---WWAFQ--LQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~---~~~~~--~~g~~v~PDivt~gK~  114 (114)
                      .++.++++++.+...|.. .|++.++++.++|++||+++|.||++++|.+.|..   ++...  .++  ..+++.+++|.
T Consensus       162 ~~~~~v~~~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~sK~  238 (388)
T 1j32_A          162 PKTKLLVFNTPSNPTGMV-YTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYE--RSVVCSGFAKT  238 (388)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHH--TEEEEEESTTT
T ss_pred             cCceEEEEeCCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccC--CEEEEeechhc
Confidence            467888888766656765 46789999999999999999999999999776631   22222  134  56677778884

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=98.30  E-value=1.1e-06  Score=67.55  Aligned_cols=71  Identities=13%  Similarity=0.023  Sum_probs=51.3

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhh--------cCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQL--------QGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~--------~g~~v~PDivt~g  112 (114)
                      ++.+++++..+...|.. .+.+.++++.++|++||+++|.||++++|.++|...++...        ++  ..+++.+++
T Consensus       168 ~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~s~s  244 (396)
T 3jtx_A          168 RTKLVFVCSPNNPSGSV-LDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQ--KLLMFTSLS  244 (396)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCT--TEEEEEEST
T ss_pred             CcEEEEEECCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccC--cEEEEeccc
Confidence            56677775445555654 45666999999999999999999999999888721333221        34  667788888


Q ss_pred             cC
Q psy1628         113 WN  114 (114)
Q Consensus       113 K~  114 (114)
                      |+
T Consensus       245 K~  246 (396)
T 3jtx_A          245 KR  246 (396)
T ss_dssp             TT
T ss_pred             cc
Confidence            83

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=98.29  E-value=1.1e-06  Score=67.68  Aligned_cols=71  Identities=7%  Similarity=-0.027  Sum_probs=52.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc---cchhhh-hcCCCCCcCEEEeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT---HWWAFQ-LQGDDIIPDIVTVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~---~~~~~~-~~g~~v~PDivt~gK  113 (114)
                      .++.+++++..+...|.. .|.+.++++.++|++||+++|.||++++|.+.|.   .++..+ .++  ....+.+++|
T Consensus       162 ~~~~~v~l~~p~nptG~~-~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~i~~~s~sK  236 (386)
T 1u08_A          162 ERTRLVILNTPHNPSATV-WQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRE--RAVAVSSFGK  236 (386)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHT--TEEEEEEHHH
T ss_pred             ccCEEEEEeCCCCCCCcc-CCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccC--cEEEEecchh
Confidence            477888887666556754 5788999999999999999999999999877663   122332 344  5556667777

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=98.28  E-value=1.3e-06  Score=66.76  Aligned_cols=69  Identities=10%  Similarity=-0.134  Sum_probs=49.5

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhh---------hcCCCCCcCEEEee
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ---------LQGDDIIPDIVTVV  112 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~---------~~g~~v~PDivt~g  112 (114)
                      +.++++...+...|. ..+.+.++++.++|++||+++|.||++++|.++|. .++..         .++  ...++.+++
T Consensus       155 ~~~v~~~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~i~~~s~s  230 (376)
T 3ezs_A          155 VDLVILNSPNNPTGR-TLSLEELISWVKLALKHDFILINDECYSEIYENTP-PPSLLEACMLAGNEAFK--NVLVIHSLS  230 (376)
T ss_dssp             CSEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSC-CCCHHHHHHHTTCTTCT--TEEEEEEST
T ss_pred             CCEEEEcCCCCCcCC-CCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCC-CCCHHHccccccccccC--cEEEEecch
Confidence            445555433444565 44777899999999999999999999999988875 33332         233  556677788


Q ss_pred             cC
Q psy1628         113 WN  114 (114)
Q Consensus       113 K~  114 (114)
                      |+
T Consensus       231 K~  232 (376)
T 3ezs_A          231 KR  232 (376)
T ss_dssp             TT
T ss_pred             hc
Confidence            84

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=98.27  E-value=2e-06  Score=67.70  Aligned_cols=73  Identities=14%  Similarity=0.023  Sum_probs=51.7

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcC--CCCCcCEEEeecC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG--DDIIPDIVTVVWN  114 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g--~~v~PDivt~gK~  114 (114)
                      ++.+++++..+...|. .++.+.++++.++|++||+++|+||++++|.+.|........+.  .+...++.+++|+
T Consensus       209 ~~~~v~l~~p~NPtG~-~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  283 (449)
T 3qgu_A          209 RTDIIFFCSPNNPTGA-AATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKY  283 (449)
T ss_dssp             CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGG
T ss_pred             CCCEEEEeCCCCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhh
Confidence            5678888755544564 55778899999999999999999999999988764122222221  0144567788884

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=98.25  E-value=2.9e-06  Score=66.76  Aligned_cols=72  Identities=10%  Similarity=0.055  Sum_probs=51.3

Q ss_pred             CceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCcc---chhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTH---WWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~---~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++.++++.|.+.+ .|. ..+.+.++++.++|++||+++|.||+++++...|..   +.+....+  ....+.+++|+
T Consensus       189 ~~~~~v~~~~~~~NPtG~-~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~--~~i~~~s~SK~  264 (425)
T 2r2n_A          189 NTPKFLYTVPNGNNPTGN-SLTSERKKEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDG--RVIRADSFSKI  264 (425)
T ss_dssp             CCCSEEEECCSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTS--CEEEEEESTTT
T ss_pred             CCceEEEECCCCcCCCCC-cCCHHHHHHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCC--CEEEEccchhh
Confidence            35778888886554 454 468899999999999999999999999988666641   22222222  33455677774

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=98.25  E-value=2.5e-06  Score=65.23  Aligned_cols=70  Identities=13%  Similarity=0.068  Sum_probs=47.1

Q ss_pred             ceEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhh-hhcCCCCCcCEEEeecC
Q psy1628          41 YPCAFF-AESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAF-QLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        41 ~iAAvi-iEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~-~~~g~~v~PDivt~gK~  114 (114)
                      ++.+++ .+| +...|. ..+.++++++.++|++||+++|+||++++|++.+...+.. +.++  ....+.+++|.
T Consensus       146 ~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~i~~~s~sK~  217 (364)
T 1lc5_A          146 DLDCLFLCTP-NNPTGL-LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNP--HIWVLRSLTKF  217 (364)
T ss_dssp             TCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCT--TEEEEEESTTT
T ss_pred             CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCC--CEEEEEECchh
Confidence            444444 566 444454 4678999999999999999999999999997655412221 2233  33445567774

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=98.25  E-value=1.7e-06  Score=66.70  Aligned_cols=51  Identities=14%  Similarity=0.177  Sum_probs=41.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      ++.+++++..+...|.. .+.+.++++.++|++||+++|.||++++|.++|.
T Consensus       161 ~~~~v~i~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~  211 (391)
T 3h14_A          161 DLAGLMVASPANPTGTM-LDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK  211 (391)
T ss_dssp             CCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC
T ss_pred             CCeEEEECCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC
Confidence            45677777666656654 4667799999999999999999999999988775

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=98.24  E-value=1.5e-06  Score=66.26  Aligned_cols=65  Identities=8%  Similarity=-0.114  Sum_probs=48.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      .++.++++.+.++..|...+    +++++++|++||+++|.||+++++++.-    ..+.++  +...+.+++|+
T Consensus       143 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~----~~~~~~--~d~~~~s~~K~  207 (376)
T 3f0h_A          143 QNFTGLLVNVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCVSAFLADPF----NMNECG--ADVMITGSQKV  207 (376)
T ss_dssp             SCCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTTTTSCC----CHHHHT--CSEEEEETTTT
T ss_pred             cCceEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEEcCccccCccc----cccccC--ccEEEecCccc
Confidence            57889999988887887766    9999999999999999999999775542    345555  43333333463

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=98.24  E-value=2.8e-06  Score=65.28  Aligned_cols=52  Identities=19%  Similarity=0.095  Sum_probs=42.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.+++++..+...|.. .+.+.++++.++|++||+++|.||+++++.+.|.
T Consensus       159 ~~~~~v~~~~~~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~  210 (389)
T 1gd9_A          159 DKTRALIINSPCNPTGAV-LTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDA  210 (389)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred             cCceEEEEECCCCCCCcC-CCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCC
Confidence            367788887665556754 6788999999999999999999999999977664

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=98.22  E-value=1.3e-06  Score=66.82  Aligned_cols=50  Identities=10%  Similarity=0.001  Sum_probs=41.0

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      +.+++++..+...|. ..+++.++++.++|++||+++|+||++++|.++|.
T Consensus       165 ~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~  214 (391)
T 4dq6_A          165 VKLFILCNPHNPVGR-VWTKDELKKLGDICLKHNVKIISDEIHSDIILKKH  214 (391)
T ss_dssp             EEEEEEESSBTTTTB-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTC
T ss_pred             CCEEEEECCCCCCCc-CcCHHHHHHHHHHHHHcCCEEEeeccccccccCCC
Confidence            666766665555665 45667799999999999999999999999988875

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=98.22  E-value=3.9e-06  Score=65.25  Aligned_cols=59  Identities=12%  Similarity=-0.058  Sum_probs=45.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~  100 (114)
                      .++.+++++..+...|.. .+++.++++.++|++||+++|.||++++|.+.+. ......+
T Consensus       173 ~~~~~v~i~~p~nptG~~-~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~-~~~~~~~  231 (406)
T 1xi9_A          173 DRTKAIAVINPNNPTGAL-YDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGE-HISPGSL  231 (406)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSC-CCCHHHH
T ss_pred             cCceEEEEECCCCCCCCC-cCHHHHHHHHHHHHHcCCEEEEEcCccccccCCC-CCCHHHc
Confidence            467888888766666754 5778999999999999999999999999977443 3444444

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=98.21  E-value=3.7e-06  Score=65.24  Aligned_cols=47  Identities=17%  Similarity=0.162  Sum_probs=40.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV   90 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt   90 (114)
                      .+++++++++.++..|...+    +++++++|++||+++|+||+++++...
T Consensus       136 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~~~~  182 (386)
T 1cs1_A          136 EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFLSPALQ  182 (386)
T ss_dssp             TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCTTTC
T ss_pred             cCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCcccccC
Confidence            36789999999888787763    899999999999999999999988543

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=98.20  E-value=3.9e-06  Score=65.04  Aligned_cols=52  Identities=13%  Similarity=0.071  Sum_probs=43.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.+++++..+...|. ..|++.++++.++|++||+++|.||+++++...|.
T Consensus       173 ~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~  224 (389)
T 1o4s_A          173 GKTKAVLINSPNNPTGV-VYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE  224 (389)
T ss_dssp             TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSC
T ss_pred             cCceEEEEcCCCCCCCC-CCCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            46778888766655675 45788999999999999999999999999877664

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=98.20  E-value=1.5e-06  Score=66.12  Aligned_cols=71  Identities=20%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+++        +++.++++++.++..|...+    +++++++|++||+++|+||+++ +|  +. .+..+.+  
T Consensus       138 ~~l~~~i~~--------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g--~~-~~~~~~~--  199 (393)
T 3kgw_A          138 QEVEEGLAQ--------HKPVLLFLVHGESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LG--GV-PIYMDQQ--  199 (393)
T ss_dssp             HHHHHHHHH--------HCCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TT--TS-CCCTTTT--
T ss_pred             HHHHHHHhh--------CCCcEEEEeccCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-cc--Cc-ccchhhc--
Confidence            345666654        26788999998887787665    7799999999999999999987 22  21 2333333  


Q ss_pred             CCCcCEEEee--c
Q psy1628         103 DIIPDIVTVV--W  113 (114)
Q Consensus       103 ~v~PDivt~g--K  113 (114)
                        .+|+++++  |
T Consensus       200 --~~d~~~~s~sK  210 (393)
T 3kgw_A          200 --GIDIMYSSSQK  210 (393)
T ss_dssp             --TCCEEEEESSS
T ss_pred             --CCCEEEecCcc
Confidence              36888877  7

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=98.19  E-value=2.2e-06  Score=66.63  Aligned_cols=75  Identities=20%  Similarity=0.285  Sum_probs=48.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++        ++.++++.......| ...+.+++++++++|++||+++|+||+++  |  +. .+..+.++ 
T Consensus       125 ~~l~~~i~~~--------~~~~v~~~~~~~~~G-~~~~~~~l~~i~~~~~~~~~~li~D~~~~--g--~~-~~~~~~~~-  189 (379)
T 3ke3_A          125 ETAVAKIKED--------KSAIVYAPHVETSSG-IILSEEYIKALSEAVHSVGGLLVIDCIAS--G--CV-WLDMKELG-  189 (379)
T ss_dssp             HHHHHHHHHH--------TCSEEEEESEETTTT-EECCHHHHHHHHHHHHHTTCEEEEECTTC--T--TC-CCCHHHHT-
T ss_pred             HHHHHHHhhc--------CCcEEEEEeecCCCc-eeCCHHHHHHHHHHHHHcCCEEEEEeccc--C--Cc-cccccccC-
Confidence            3456666542        233455544444445 45568899999999999999999999997  3  33 45566666 


Q ss_pred             CCCcCEEEeec
Q psy1628         103 DIIPDIVTVVW  113 (114)
Q Consensus       103 ~v~PDivt~gK  113 (114)
                       +.+.+.+..|
T Consensus       190 -~d~~~~s~~K  199 (379)
T 3ke3_A          190 -IDVLISAPQK  199 (379)
T ss_dssp             -CSEEEECTTT
T ss_pred             -CCEEEecchh
Confidence             5333333336

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=98.18  E-value=4e-06  Score=65.20  Aligned_cols=52  Identities=12%  Similarity=-0.049  Sum_probs=42.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++...+...|.. .+.+.++++.++|+++|+++|.||++++|+..|.
T Consensus       162 ~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~  213 (400)
T 3asa_A          162 THIDILCLCSPNNPTGTV-LNKDQLRAIVHYAIEHEILILFDAAYSTFISDPS  213 (400)
T ss_dssp             CCCSEEEEESSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTT
T ss_pred             cCccEEEEeCCCCCCCCc-CCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCC
Confidence            357788887555555654 6789999999999999999999999999977664

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=98.16  E-value=3.8e-06  Score=66.18  Aligned_cols=61  Identities=10%  Similarity=-0.062  Sum_probs=47.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEE--eec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVT--VVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt--~gK  113 (114)
                      .+++++++|+.++..|.+.+    +++++++|++||+++|+||+++.+       +..+..+  ..+|+++  ++|
T Consensus       150 ~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~~~-------~~~~~~~--~~~di~~~S~sK  212 (392)
T 3qhx_A          150 PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFASP-------ALQQPLS--LGADVVLHSTTK  212 (392)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCT-------TTCCGGG--GTCSEEEEETTT
T ss_pred             CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCccc-------ccCChHH--hCCcEEEEcCcc
Confidence            58899999999887787654    999999999999999999999732       1223333  5679988  566

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=98.16  E-value=5.4e-06  Score=64.22  Aligned_cols=61  Identities=15%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+++++++++.++..|...+    +++|+++|++||+++|+||++++ +..     ......  ..+|+++++
T Consensus       162 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~-----~~~~~~--~~~di~~~s  222 (423)
T 3lvm_A          162 DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV-GKL-----PIDLSQ--LKVDLMSFS  222 (423)
T ss_dssp             TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT-TTS-----CCCTTT--SCCSEEEEE
T ss_pred             CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc-CCC-----CcChhh--cCCCEEEec
Confidence            57899999999887787766    88999999999999999999874 222     122223  568999988

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=98.15  E-value=3.9e-06  Score=65.35  Aligned_cols=70  Identities=11%  Similarity=0.017  Sum_probs=47.3

Q ss_pred             ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhh----cCCCCCcCEEEeecC
Q psy1628          41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQL----QGDDIIPDIVTVVWN  114 (114)
Q Consensus        41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~----~g~~v~PDivt~gK~  114 (114)
                      ++.++++ .| +...|. ..+.++++++.++|++||+++|+||++++|.++|....+...    .+  ....+.+++|.
T Consensus       172 ~~~~v~l~~p-~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~--~~i~~~s~sK~  246 (412)
T 2x5d_A          172 KPRMMILGFP-SNPTAQ-CVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKD--IAVEFFTLSKS  246 (412)
T ss_dssp             CCSEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGG--TEEEEEECC-C
T ss_pred             CceEEEECCC-CCCCCC-cCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccC--cEEEEecCccc
Confidence            5566666 44 443564 457899999999999999999999999999776641122222    22  44456677774

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=98.14  E-value=5e-06  Score=62.97  Aligned_cols=54  Identities=13%  Similarity=-0.008  Sum_probs=41.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +.+++.+++        .++.++++++..+..|...+    ++++.++|++||+++|+||+++++.
T Consensus       161 ~~l~~~i~~--------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~~  214 (397)
T 3f9t_A          161 KFVKDAVED--------YDVDGIIGIAGTTELGTIDN----IEELSKIAKENNIYIHVDAAFGGLV  214 (397)
T ss_dssp             HHHHHHHHH--------SCCCEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTGGGT
T ss_pred             HHHHHHHhh--------cCCeEEEEECCCCCCCCCCC----HHHHHHHHHHhCCeEEEEccccchh
Confidence            355666654        25667887877666676644    8899999999999999999999863

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=98.13  E-value=7.1e-06  Score=63.68  Aligned_cols=49  Identities=10%  Similarity=0.072  Sum_probs=38.7

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .+.++.+| ....|. ..++++++++.++|++||+++|.||++++|.++|.
T Consensus       179 ~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~  227 (416)
T 1bw0_A          179 KLLIVTNP-SNPCGS-NFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGK  227 (416)
T ss_dssp             EEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSS
T ss_pred             eEEEEeCC-CCCCCc-ccCHHHHHHHHHHHHHcCCEEEEEccccccccCCC
Confidence            34556666 333464 46789999999999999999999999999876663

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=98.13  E-value=4e-06  Score=64.24  Aligned_cols=51  Identities=16%  Similarity=0.101  Sum_probs=41.2

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      ++.++++...+...|.. .+.++++++.++|++||+++|.||++++|.+.|.
T Consensus       158 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~  208 (376)
T 2dou_A          158 EAKVLLLNYPNNPTGAV-ADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGE  208 (376)
T ss_dssp             HEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSC
T ss_pred             CceEEEECCCCCCcCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCC
Confidence            56778876434445654 5789999999999999999999999999977664

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=98.11  E-value=3.9e-06  Score=66.95  Aligned_cols=42  Identities=12%  Similarity=0.064  Sum_probs=38.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+++++++|+.++..|...+    +++++++|++||+++|+||+++
T Consensus       151 ~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~~  192 (400)
T 3nmy_A          151 ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTFA  192 (400)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCc
Confidence            57899999999888887764    9999999999999999999996

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=98.10  E-value=5.3e-06  Score=63.44  Aligned_cols=48  Identities=19%  Similarity=0.173  Sum_probs=38.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.+++++..++..|...+.+     +.++|++||+++|.||+++++.+.|.
T Consensus       153 ~~~~~v~~~~p~nptG~~~~~~-----l~~~~~~~~~~li~De~~~~~~~~g~  200 (370)
T 2z61_A          153 DKTKAIIINSPSNPLGEVIDRE-----IYEFAYENIPYIISDEIYNGLVYEGK  200 (370)
T ss_dssp             SSEEEEEEESSCTTTCCCCCHH-----HHHHHHHHCSEEEEECTTTTCBSSSC
T ss_pred             cCceEEEEcCCCCCcCcccCHH-----HHHHHHHcCCEEEEEcchhhcccCCC
Confidence            4677888876666567665544     99999999999999999999977765

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=98.09  E-value=3.6e-06  Score=65.63  Aligned_cols=57  Identities=14%  Similarity=-0.104  Sum_probs=44.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCeEEEcccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHV-RAAGGVCVADEVQVG   86 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc-~~~gillI~DEV~tG   86 (114)
                      +.+++.+++.       .++.++++.|.+++-.-...+.+.++++.++| ++||+++|.||+++.
T Consensus       161 ~~l~~~l~~~-------~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~  218 (423)
T 3ez1_A          161 DAVERLAGTD-------PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRV  218 (423)
T ss_dssp             HHHHHHHHSC-------TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSS
T ss_pred             HHHHHHHhhC-------CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcch
Confidence            3455566432       57889999997766433556667799999999 999999999999994

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=98.06  E-value=3.8e-06  Score=65.66  Aligned_cols=71  Identities=11%  Similarity=0.051  Sum_probs=49.8

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc--cchhhh-hcCCCCCcCEEEeecC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT--HWWAFQ-LQGDDIIPDIVTVVWN  114 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~--~~~~~~-~~g~~v~PDivt~gK~  114 (114)
                      ++.++++...+...|.. .+.++++++.++|++||+++|.||++++|.++|.  .++... .++  ....+.+++|.
T Consensus       181 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~--~~i~~~s~sK~  254 (404)
T 2o1b_A          181 KTKLIYLTYPNNPTGST-ATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKD--VAIEIYSLSKG  254 (404)
T ss_dssp             HEEEEEECSSCTTTCCC-CCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHH--HEEEEEESTTT
T ss_pred             CceEEEEcCCCCCCCcc-CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCC--CEEEEEecchh
Confidence            56788886434445654 6789999999999999999999999999976663  122221 122  34456677774

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=98.03  E-value=1.2e-05  Score=60.83  Aligned_cols=48  Identities=13%  Similarity=0.074  Sum_probs=36.2

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV   90 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt   90 (114)
                      ..++++...+...|. ..+.+.++++.++|++||+++|.||++++|.+.
T Consensus       145 ~~~v~i~~p~nptG~-~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~  192 (361)
T 3ftb_A          145 VDSVIIGNPNNPNGG-LINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD  192 (361)
T ss_dssp             CSEEEEETTBTTTTB-CCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC
T ss_pred             CCEEEEeCCCCCCCC-CCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC
Confidence            334444333444454 557778999999999999999999999999775

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=98.01  E-value=8.3e-06  Score=62.81  Aligned_cols=71  Identities=13%  Similarity=0.064  Sum_probs=47.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc-ccccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ-VGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGfgRtG~~~~~~~~~  100 (114)
                      +.+++.++++        ++++++++ |..+   . ..+   +++++++|++||+++|+||++ +|+.++|. +...  .
T Consensus       159 ~~l~~~i~~~--------~~~~v~~~~~~~~---~-~~~---l~~l~~l~~~~~~~li~De~~~~~~~~~~~-~~~~--~  220 (420)
T 3gbx_A          159 DEMAKLAKEH--------KPKMIIGGFSAYS---G-VVD---WAKMREIADSIGAYLFVDMAHVAGLIAAGV-YPNP--V  220 (420)
T ss_dssp             HHHHHHHHHH--------CCSEEEECCTTCC---S-CCC---HHHHHHHHHHTTCEEEEECTTTHHHHHTTS-SCCS--T
T ss_pred             HHHHHHHHhc--------CCeEEEEecCccC---C-ccC---HHHHHHHHHHcCCEEEEECCcchhceeccc-CCcc--c
Confidence            4566666653        46778885 4432   2 222   889999999999999999996 56666664 2221  2


Q ss_pred             CCCCCcCEEEee--cC
Q psy1628         101 GDDIIPDIVTVV--WN  114 (114)
Q Consensus       101 g~~v~PDivt~g--K~  114 (114)
                      .   .+|+++.+  |+
T Consensus       221 ~---~~di~~~s~sK~  233 (420)
T 3gbx_A          221 P---HAHVVTTTTHKT  233 (420)
T ss_dssp             T---TSSEEEEESSGG
T ss_pred             c---cCCEEEeecccC
Confidence            2   38999954  74

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=98.00  E-value=1.2e-05  Score=61.99  Aligned_cols=72  Identities=8%  Similarity=-0.073  Sum_probs=50.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH------hCCeEEEccccccccccCccch-hhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA------AGGVCVADEVQVGFGRVGTHWW-AFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~------~gillI~DEV~tGfgRtG~~~~-~~~~~g~~v~PDivt~g  112 (114)
                      .++.++++...+...|.. .+.+.++++.++|++      ||+++|.||++++|.+.|.... ..+.++  ....+.+++
T Consensus       171 ~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~--~~i~~~s~s  247 (398)
T 3ele_A          171 AHTRGVIINSPNNPSGTV-YSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYD--NTLVCYSYS  247 (398)
T ss_dssp             TTEEEEEECSSCTTTCCC-CCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCS--SEEEEEEST
T ss_pred             cCCCEEEEcCCCCCCCCC-CCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcC--CeEEEEehh
Confidence            467788886545555654 466679999999999      9999999999999988774111 122333  445555677


Q ss_pred             cC
Q psy1628         113 WN  114 (114)
Q Consensus       113 K~  114 (114)
                      |+
T Consensus       248 K~  249 (398)
T 3ele_A          248 KS  249 (398)
T ss_dssp             TT
T ss_pred             hc
Confidence            74

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=98.00  E-value=1.7e-05  Score=60.08  Aligned_cols=70  Identities=13%  Similarity=-0.040  Sum_probs=50.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+.+        +++.++++++.+...|...+    ++++.++|++||+++|.||+++.. ...   +....   
T Consensus       117 ~~l~~~i~~--------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~---~~~~~---  177 (384)
T 3zrp_A          117 GEVEEEVRK--------SEYKLVALTHVETSTGVREP----VKDVINKIRKYVELIVVDGVSSVG-AEE---VKAEE---  177 (384)
T ss_dssp             HHHHHHHHH--------SCEEEEEEESEETTTTEECC----HHHHHHHHGGGEEEEEEECTTTTT-TSC---CCTTT---
T ss_pred             HHHHHHHHh--------CCCcEEEEeCCCCCCceECc----HHHHHHHHHhcCCEEEEECccccc-Ccc---ccccc---
Confidence            355666654        36889999998887787665    889999999999999999998732 111   11222   


Q ss_pred             CCCcCEEEee
Q psy1628         103 DIIPDIVTVV  112 (114)
Q Consensus       103 ~v~PDivt~g  112 (114)
                       ..+|+++.+
T Consensus       178 -~~~d~~~~s  186 (384)
T 3zrp_A          178 -WNVDVYLTA  186 (384)
T ss_dssp             -TTCSEEEEE
T ss_pred             -cCCCEEEec
Confidence             347888877

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=97.99  E-value=1.4e-05  Score=62.95  Aligned_cols=62  Identities=16%  Similarity=0.071  Sum_probs=47.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEE--eec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVT--VVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt--~gK  113 (114)
                      .++.++++|+..+..|.+.+    ++++.++|++||+++|+||++++++....      ...  ..+|+++  ++|
T Consensus       139 ~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~~~~~~~~~------~~~--~~~di~~~S~~K  202 (412)
T 2cb1_A          139 AKTRAVFVETVANPALLVPD----LEALATLAEEAGVALVVDNTFGAAGALCR------PLA--WGAHVVVESLTK  202 (412)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGGGTTTTSCC------GGG--GTCSEEEEETTT
T ss_pred             cCCeEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccccccCC------ccc--cCCeEEEECCcc
Confidence            47899999998887777664    89999999999999999999997632222      122  4578888  555

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=97.99  E-value=7.4e-06  Score=62.84  Aligned_cols=61  Identities=20%  Similarity=0.193  Sum_probs=47.0

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee--c
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV--W  113 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g--K  113 (114)
                      ++.++++++.+...|...+    ++++.++|+++|+++|+||+++ +|....   ..  ..  ..+|+++.+  |
T Consensus       159 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~--~~--~~~di~~~s~sK  221 (393)
T 1vjo_A          159 RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LGGVPI---FL--DA--WGVDLAYSCSQK  221 (393)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TTTSCC---CT--TT--TTCSEEECCSSS
T ss_pred             CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-ccCcCC---cc--cc--cCccEEEEcCcc
Confidence            4568889888777777654    6899999999999999999999 765432   22  23  568999877  7

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=97.99  E-value=2.4e-05  Score=60.45  Aligned_cols=61  Identities=10%  Similarity=0.076  Sum_probs=47.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.++++++.++..|...+    ++++.++|++||+++|+||+++ +|....   ..+.+    .+|+++++
T Consensus       164 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~~---~~~~~----~~d~~~~s  224 (416)
T 1qz9_A          164 QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AGAVPV---DLHQA----GADYAIGC  224 (416)
T ss_dssp             TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSCC---CHHHH----TCSEEEEC
T ss_pred             CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-ccCcCC---Chhhc----CCCEEEec
Confidence            47889999999888787665    7999999999999999999997 444332   23333    37888875

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=97.98  E-value=2.4e-05  Score=60.78  Aligned_cols=82  Identities=12%  Similarity=0.127  Sum_probs=52.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc--cchhhhh
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT--HWWAFQL   99 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~--~~~~~~~   99 (114)
                      +.+++.++++.      .+...+++ .| +...| ...+.+.++++.++|++||+++|.||+..+|+..+.  ..++...
T Consensus       171 ~~l~~~l~~~~------~~~~~i~~~~p-~NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~  242 (409)
T 4eu1_A          171 AGMLECLDKAP------EGSVILVHACA-HNPTG-VDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRH  242 (409)
T ss_dssp             HHHHHHHHHSC------TTCEEEEESSS-CTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred             HHHHHHHHhCC------CCcEEEEECCC-CCCCC-CCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHH
Confidence            35566666531      34444443 44 33334 556778899999999999999999999999976651  0123332


Q ss_pred             -cCCCCCcCEE---EeecC
Q psy1628         100 -QGDDIIPDIV---TVVWN  114 (114)
Q Consensus       100 -~g~~v~PDiv---t~gK~  114 (114)
                       .+  ..++++   +++|+
T Consensus       243 ~~~--~~~~~i~~~S~SK~  259 (409)
T 4eu1_A          243 LVD--MVPNLIVAQSFSKN  259 (409)
T ss_dssp             HHT--TSSCCEEEEECTTT
T ss_pred             HHh--hCCcEEEEecCccc
Confidence             24  566765   55663

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=97.98  E-value=2.1e-05  Score=59.69  Aligned_cols=73  Identities=15%  Similarity=0.016  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+++.       .+++++++++.++..|...+    ++++.++|++||+++|+||+++.+ ...   +....   
T Consensus       135 ~~l~~~l~~~-------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~-~~~---~~~~~---  196 (386)
T 2dr1_A          135 EDLDDALRKN-------PDVEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG-GAD---IKFDK---  196 (386)
T ss_dssp             HHHHHHHHHC-------TTCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT-TBC---CCTTT---
T ss_pred             HHHHHHHhcC-------CCCcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc-Ccc---ccccc---
Confidence            3456666543       47889999988877777654    799999999999999999998733 221   22222   


Q ss_pred             CCCcCEEEee--cC
Q psy1628         103 DIIPDIVTVV--WN  114 (114)
Q Consensus       103 ~v~PDivt~g--K~  114 (114)
                       ..+|+++.+  |.
T Consensus       197 -~~~di~~~s~sK~  209 (386)
T 2dr1_A          197 -WGLDVVFSSSQKA  209 (386)
T ss_dssp             -TTCSEEEEETTST
T ss_pred             -cCCcEEEEecccc
Confidence             346999888  73

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=97.96  E-value=2.8e-05  Score=60.81  Aligned_cols=62  Identities=11%  Similarity=0.082  Sum_probs=46.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHH-----hCCeEEEccccccccccCc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCA-FFAESLQSCGGQIIPPANYLREVYKHVRA-----AGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~-----~gillI~DEV~tGfgRtG~   92 (114)
                      +.+++.++++.      .+..+ ++..| +...|. ..+.++++++.++|++     ||+++|.||++++|.+.|.
T Consensus       177 ~~l~~~l~~~~------~~~~~v~i~~p-~nptG~-~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~  244 (430)
T 2x5f_A          177 DSLVEALQSYN------KDKVIMILNYP-NNPTGY-TPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDV  244 (430)
T ss_dssp             HHHHHHHHHCC------SSEEEEEECSS-CTTTCC-CCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSS
T ss_pred             HHHHHHHHhcC------CCCEEEEEcCC-CCCCCC-cCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcc
Confidence            34566666541      35544 55666 554564 5688999999999999     9999999999999977764

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=97.96  E-value=2.2e-05  Score=59.84  Aligned_cols=62  Identities=15%  Similarity=-0.008  Sum_probs=47.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEE--eec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVT--VVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt--~gK  113 (114)
                      .+++++++++.++..|...+    ++++.++|++||+++|+||+++. |+..   +....    ..+|+++  ++|
T Consensus       163 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~-g~~~---~~~~~----~~~d~~~~s~~K  226 (406)
T 1kmj_A          163 EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAV-MHHP---VDVQA----LDCDFYVFSGHK  226 (406)
T ss_dssp             TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC---CCHHH----HTCSEEEEEGGG
T ss_pred             cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhc-CCCC---Ccccc----cCCCEEEEEchh
Confidence            47899999999888887766    89999999999999999999974 3332   22222    3478876  556

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=97.96  E-value=8.8e-06  Score=62.76  Aligned_cols=71  Identities=14%  Similarity=0.023  Sum_probs=47.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccc-ccccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAE-SLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQ-VGFGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~-tGfgRtG~~~~~~~~~  100 (114)
                      +.+++.+.+.        ++++++++ |..+       ....+++++++|++||+++|+||+| +|+.+.|. .+..  .
T Consensus       162 ~~l~~~i~~~--------~~~~v~~~~~~~~-------~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~-~~~~--~  223 (425)
T 3ecd_A          162 DQVEALAQQH--------KPSLIIAGFSAYP-------RKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGR-HANP--V  223 (425)
T ss_dssp             HHHHHHHHHH--------CCSEEEEECSCCC-------SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTS-SCCG--G
T ss_pred             HHHHHHHhhc--------CCcEEEEccccCC-------CcCCHHHHHHHHHHcCCEEEEECcChHhhhhccc-ccCc--h
Confidence            3566666543        45788887 4332       3456799999999999999999995 66655554 3221  1


Q ss_pred             CCCCCcCEEEee--cC
Q psy1628         101 GDDIIPDIVTVV--WN  114 (114)
Q Consensus       101 g~~v~PDivt~g--K~  114 (114)
                      .   .+|+++.+  |+
T Consensus       224 ~---~~di~~~s~sK~  236 (425)
T 3ecd_A          224 E---HAHVVTSTTHKT  236 (425)
T ss_dssp             G---TCSEEEEESSGG
T ss_pred             h---cCcEEEecCCcc
Confidence            1   25887665  73

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=97.94  E-value=9.6e-06  Score=61.71  Aligned_cols=69  Identities=9%  Similarity=-0.094  Sum_probs=48.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcC----EEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPD----IVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PD----ivt~gK~  114 (114)
                      .++.+++++..+...|.. .+.+.++++.++|++ |+++|+||++++|.+ |. .++.....  ..+|    +.+++|.
T Consensus       154 ~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~~~-~~~li~De~~~~~~~-~~-~~~~~~~~--~~~~~~i~~~s~sK~  226 (363)
T 3ffh_A          154 EKTTIVWICNPNNPTGNY-IELADIQAFLDRVPS-DVLVVLDEAYIEYVT-PQ-PEKHEKLV--RTYKNLIITRTFSKI  226 (363)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHTTSCT-TSEEEEECTTGGGCS-SC-CCCCGGGG--GTCTTEEEEEESSST
T ss_pred             cCCCEEEEeCCCCCcCCC-cCHHHHHHHHHhCCC-CcEEEEeCchHhhcC-cc-ccCHHHHh--hcCCCEEEEeechhh
Confidence            468888887666666754 466677777777777 999999999999987 65 44433332  3345    5566774

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=97.92  E-value=2.3e-05  Score=61.00  Aligned_cols=49  Identities=12%  Similarity=0.052  Sum_probs=37.2

Q ss_pred             ceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ++.++++ .| +...|. ..+.+.++++.++|++||+++|.||+++++...+
T Consensus       182 ~~~~v~l~~p-~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~  231 (437)
T 3g0t_A          182 QFCSIIYSNP-NNPTWQ-CMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK  231 (437)
T ss_dssp             CCCEEEEESS-CTTTCC-CCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS
T ss_pred             CceEEEEeCC-CCCCCC-cCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC
Confidence            4555544 66 444564 4567779999999999999999999999875544

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=97.92  E-value=1.2e-05  Score=63.08  Aligned_cols=73  Identities=7%  Similarity=-0.175  Sum_probs=52.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HhCCeEEEccccc--cccccCccchhh-------hhcCCCCCcCEE
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVR-AAGGVCVADEVQV--GFGRVGTHWWAF-------QLQGDDIIPDIV  109 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~-~~gillI~DEV~t--GfgRtG~~~~~~-------~~~g~~v~PDiv  109 (114)
                      .++.++++.|.+.+-.-...+.+.++++.++|+ +||+++|.||++.  +|...|......       +..+  ...++.
T Consensus       177 ~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~  254 (422)
T 3d6k_A          177 PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPN--RFWFMS  254 (422)
T ss_dssp             TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT--CEEEEE
T ss_pred             CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCC--cEEEEc
Confidence            367888878887764335778999999999999 9999999999997  576555311122       1223  556677


Q ss_pred             EeecC
Q psy1628         110 TVVWN  114 (114)
Q Consensus       110 t~gK~  114 (114)
                      +++|.
T Consensus       255 S~SK~  259 (422)
T 3d6k_A          255 STSKI  259 (422)
T ss_dssp             ESTTT
T ss_pred             Chhhh
Confidence            78884

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=97.91  E-value=4e-05  Score=58.80  Aligned_cols=61  Identities=16%  Similarity=0.088  Sum_probs=47.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+++++++++.++..|...+    ++++.++|++||+++|+||+++. |...   +....+    .+|+++.+
T Consensus       168 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~-~~~~---~~~~~~----~~di~~~s  228 (420)
T 1t3i_A          168 EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSA-PHYP---LDVQLI----DCDWLVAS  228 (420)
T ss_dssp             TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT-TTSC---CCHHHH----TCSEEEEE
T ss_pred             CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhcc-CCcc---Cchhhc----CCCEEEEe
Confidence            47899999998887787766    89999999999999999999973 3332   123333    37999887

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=97.91  E-value=2.2e-05  Score=60.95  Aligned_cols=60  Identities=15%  Similarity=0.161  Sum_probs=42.6

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .+++.+.++       ....++++-|.+.+ .| ...+.+.++++.++|++||+++|.||++.+|+..|
T Consensus       165 ~l~~~l~~~-------~~~~~~~~~~~p~nPtG-~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~  225 (412)
T 1yaa_A          165 GFLNAIQKA-------PEGSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGD  225 (412)
T ss_dssp             HHHHHHHHS-------CTTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSC
T ss_pred             HHHHHHHhC-------CCCCEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCCEEEEecccccccCCc
Confidence            455666553       12234444344333 45 46778899999999999999999999999997665

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=97.91  E-value=1.1e-05  Score=63.12  Aligned_cols=73  Identities=5%  Similarity=-0.180  Sum_probs=51.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHH-HHhCCeEEEccccccc--cccCc---cchhhh----hcCCCCCcCEE
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHV-RAAGGVCVADEVQVGF--GRVGT---HWWAFQ----LQGDDIIPDIV  109 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc-~~~gillI~DEV~tGf--gRtG~---~~~~~~----~~g~~v~PDiv  109 (114)
                      .++.++++.|...+-.-...+.+.++++.++| ++||+++|.||+++++  +..+.   .++...    ..+  ...++.
T Consensus       179 ~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~  256 (427)
T 3ppl_A          179 PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPN--RFWAFT  256 (427)
T ss_dssp             TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTT--SEEEEE
T ss_pred             CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCccchhhhhhccCCCC--cEEEEe
Confidence            57889999997665433455666799999999 9999999999999984  43331   122221    223  556677


Q ss_pred             EeecC
Q psy1628         110 TVVWN  114 (114)
Q Consensus       110 t~gK~  114 (114)
                      +++|.
T Consensus       257 S~SK~  261 (427)
T 3ppl_A          257 STSKI  261 (427)
T ss_dssp             ESTTT
T ss_pred             chhhc
Confidence            88884

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=97.89  E-value=3.9e-05  Score=57.24  Aligned_cols=60  Identities=15%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      ++.+++++..+...|...+    ++++.++|++||+++|+||++ ++++...   ..+.++    +|+++++
T Consensus       124 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~D~a~-~~~~~~~---~~~~~~----~d~~~~s  183 (353)
T 2yrr_A          124 RYRMVALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAVT-TLGMLPF---SMRAMG----VDYAFTG  183 (353)
T ss_dssp             CCSEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTT-TTTTSCC---CHHHHT----CSEEECC
T ss_pred             CCCEEEEEccCCCcceecC----HHHHHHHHHHcCCeEEEEcCc-ccccccc---cccccC----ceEEEec
Confidence            5667888888777776655    779999999999999999999 5765432   233333    5888763

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=97.89  E-value=1.8e-05  Score=60.85  Aligned_cols=70  Identities=16%  Similarity=0.057  Sum_probs=46.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc-ccccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG-FGRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG-fgRtG~~~~~~~~~  100 (114)
                      +.+++.+++.        +++++++ +|..+    ...+   ++++.++|++||+++|+||++++ +...|. ...  ..
T Consensus       153 ~~l~~~l~~~--------~~~~v~~~~p~~~----~~~~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~  214 (407)
T 2dkj_A          153 EEVRRLALEH--------RPKVIVAGASAYP----RFWD---FKAFREIADEVGAYLVVDMAHFAGLVAAGL-HPN--PL  214 (407)
T ss_dssp             HHHHHHHHHH--------CCSEEEECCSSCC----SCCC---HHHHHHHHHHHTCEEEEECTTTHHHHHTTC-SCC--CT
T ss_pred             HHHHHHHhhc--------CCeEEEEeccccC----CCCC---HHHHHHHHHHcCCEEEEEccccccccccCc-cCC--cc
Confidence            3556666542        4567777 67654    2222   89999999999999999999986 544554 221  11


Q ss_pred             CCCCCcCEE--Eeec
Q psy1628         101 GDDIIPDIV--TVVW  113 (114)
Q Consensus       101 g~~v~PDiv--t~gK  113 (114)
                      .   .+|++  +++|
T Consensus       215 ~---~~di~~~s~sK  226 (407)
T 2dkj_A          215 P---YAHVVTSTTHK  226 (407)
T ss_dssp             T---TCSEEEEESSG
T ss_pred             c---cccEEEEeccc
Confidence            2   26888  5677

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=97.88  E-value=1.1e-05  Score=61.03  Aligned_cols=46  Identities=15%  Similarity=0.069  Sum_probs=39.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++++++++++.++..|....+.+.++++.++|++||+++|+||.+.
T Consensus       136 ~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~  181 (359)
T 3pj0_A          136 EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL  181 (359)
T ss_dssp             SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred             CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence            5789999998876554467788999999999999999999999875

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=97.86  E-value=3.7e-05  Score=58.41  Aligned_cols=62  Identities=19%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHH----HhCCeEEEccccccccccCccchhhhhcCCCCCcCEEE--eec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVR----AAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVT--VVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~----~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt--~gK  113 (114)
                      .+++++++++.+...|...+    ++++.++|+    ++|+++|+||+++ +|....   ..  ..  ..+|+++  ++|
T Consensus       153 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~li~Dea~~-~g~~~~---~~--~~--~~~d~~~~s~~K  220 (390)
T 1elu_A          153 PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS-AGSLPL---DF--SR--LEVDYYAFTGHK  220 (390)
T ss_dssp             TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT-BTTBCC---CT--TT--SCCSEEEEESSS
T ss_pred             CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcEEEEEcccc-cCCcCC---Ch--hh--cCCCEEEccccc
Confidence            57899999998887787766    899999999    9999999999997 554432   12  12  4679888  666

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=97.85  E-value=2.2e-05  Score=63.57  Aligned_cols=44  Identities=18%  Similarity=0.176  Sum_probs=38.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .++++++++..+...|...+    +++|+++|++||+++|+||+++||
T Consensus       238 ~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~~~  281 (514)
T 3mad_A          238 PNTVVVAGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLGGF  281 (514)
T ss_dssp             TTEEEEEEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             cCCEEEEEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccccc
Confidence            47889999998877787654    799999999999999999999987

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=97.85  E-value=6.4e-05  Score=56.82  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=47.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC--CeEEEccccccccccCccchhhhhcCCCCCcCEEEee--c
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG--GVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV--W  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g--illI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g--K  113 (114)
                      .++.++++++.+...|...+    ++++.++|++||  +++|.||+++ |+...   +..+  .  ..+|+++.+  |
T Consensus       138 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~~~~~---~~~~--~--~~~di~~~s~sK  203 (384)
T 1eg5_A          138 EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IGKIP---FSLE--K--LEVDYASFSAHK  203 (384)
T ss_dssp             TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TTTSC---CCCT--T--TCCSEEEEEGGG
T ss_pred             CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-cCCcc---cCch--h--cCCCEEEecHHH
Confidence            47889999988777776665    699999999999  9999999997 65432   1222  2  357999988  7

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=97.85  E-value=2.8e-05  Score=59.87  Aligned_cols=72  Identities=14%  Similarity=0.103  Sum_probs=43.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~~~~~~~~~g  101 (114)
                      +.+++.+.+.        ++.++++.+  ++.|...+    +++++++|++||+++|.||+++ |+...|.      ...
T Consensus       154 ~~l~~~i~~~--------~~~~v~~~~--~~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~------~~~  213 (417)
T 3n0l_A          154 EKVREIAKKE--------KPKLIVCGA--SAYARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGE------HPS  213 (417)
T ss_dssp             HHHHHHHHHH--------CCSEEEECC--SSCCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTS------SCC
T ss_pred             HHHHHHHHhc--------CCeEEEECC--cccCccCC----HHHHHHHHHHcCCEEEEECccchhhhhccc------CCC
Confidence            3566666542        445666433  33465444    8999999999999999999974 3322221      111


Q ss_pred             CCCCcCEEEee--cC
Q psy1628         102 DDIIPDIVTVV--WN  114 (114)
Q Consensus       102 ~~v~PDivt~g--K~  114 (114)
                      .--..|+++.+  |+
T Consensus       214 ~~~~~di~~~s~sK~  228 (417)
T 3n0l_A          214 PFPYAHVVSSTTHKT  228 (417)
T ss_dssp             CTTTCSEEEEESSTT
T ss_pred             ccccceEEEeeCccc
Confidence            00024899888  74

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=97.84  E-value=3.8e-05  Score=60.10  Aligned_cols=51  Identities=14%  Similarity=0.116  Sum_probs=39.5

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      ++.++++...+...|. ..+.+.++++.++|++||+++|+||++++|...+.
T Consensus       198 ~~~~v~l~~p~NPtG~-~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~  248 (432)
T 3ei9_A          198 RTDIIFFCSPNNPTGA-AATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDN  248 (432)
T ss_dssp             CCSEEEEESSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSC
T ss_pred             CCCEEEEeCCCCCCCC-CCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCC
Confidence            5667777644444454 55777899999999999999999999999865544

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=97.84  E-value=1.5e-05  Score=63.75  Aligned_cols=42  Identities=24%  Similarity=0.223  Sum_probs=36.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+++++++|+.++..|...+    +++++++|+++|+++|+||+++
T Consensus       165 ~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~~  206 (414)
T 3ndn_A          165 VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVFA  206 (414)
T ss_dssp             SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCCc
Confidence            46789999999888786643    8899999999999999999987

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=97.84  E-value=3.9e-05  Score=60.04  Aligned_cols=61  Identities=13%  Similarity=-0.004  Sum_probs=46.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEE--eec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVT--VVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt--~gK  113 (114)
                      .+++++++|+..+..|...+    ++++.++|+++|+++|+||+++++. .+.      ..+  ..+|+++  ++|
T Consensus       143 ~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~~~~-~~~------~~~--~~~di~~~S~sK  205 (389)
T 3acz_A          143 PNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFTSPC-FLK------PLE--LGADIALHSVSK  205 (389)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTTCTT-TCC------GGG--TTCSEEEEETTT
T ss_pred             CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcccc-ccC------ccc--cCCeEEEECChh
Confidence            57899999998887777664    8999999999999999999998652 122      122  4578884  556

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=97.83  E-value=4e-05  Score=58.87  Aligned_cols=69  Identities=16%  Similarity=0.116  Sum_probs=48.5

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhh-hhcCCCCCcCEEEeecC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAF-QLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~-~~~g~~v~PDivt~gK~  114 (114)
                      ++.++++...+...|.. .+.+.++++.++|+ +|+++|+||++++|++... ++.. +.++  ....+.+++|.
T Consensus       146 ~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~-~~~~~~~~~--~~i~~~s~sK~  215 (356)
T 1fg7_A          146 GVKVVYVCSPNNPTGQL-INPQDFRTLLELTR-GKAIVVADEAYIEFCPQAS-LAGWLAEYP--HLAILRTLSKA  215 (356)
T ss_dssp             TEEEEEEESSCTTTCCC-CCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGC-SGGGTTTCT--TEEEEEESSST
T ss_pred             CCCEEEEeCCCCCCCCC-CCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCc-HHHHHhhCC--CEEEEecchHh
Confidence            56777776555555654 57899999999999 9999999999999974333 3333 2233  33446677774

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=97.82  E-value=3.9e-05  Score=59.66  Aligned_cols=71  Identities=6%  Similarity=0.005  Sum_probs=48.4

Q ss_pred             ceEEEEEc-ccCCCCCcccCCHHHHHHHHHHHH------HhCCeEEEccccccccccCcc--chhhhhcCCCCCcCE---
Q psy1628          41 YPCAFFAE-SLQSCGGQIIPPANYLREVYKHVR------AAGGVCVADEVQVGFGRVGTH--WWAFQLQGDDIIPDI---  108 (114)
Q Consensus        41 ~iAAviiE-Pv~g~gG~~~~~~~fl~~lr~lc~------~~gillI~DEV~tGfgRtG~~--~~~~~~~g~~v~PDi---  108 (114)
                      ..++++++ |.+...|. ..+.+.++++.++|+      +||+++|.||+.++|++.|..  .+.....+  +.+|+   
T Consensus       179 ~~~~vi~~~p~~NPtG~-~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~~~~~i  255 (418)
T 3rq1_A          179 TNVVVIFNTPGNNPTGY-SIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSH--LPKEILTC  255 (418)
T ss_dssp             SEEEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTT--CCTTEEEE
T ss_pred             CCEEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHh--cCCCceEE
Confidence            34566666 53555564 456666999999999      899999999999999877641  12223334  66773   


Q ss_pred             E--EeecC
Q psy1628         109 V--TVVWN  114 (114)
Q Consensus       109 v--t~gK~  114 (114)
                      +  +++|+
T Consensus       256 ~~~S~sK~  263 (418)
T 3rq1_A          256 VCYSLSKG  263 (418)
T ss_dssp             EEEESTTT
T ss_pred             EEEeCCCC
Confidence            2  56773

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=97.82  E-value=2.6e-05  Score=58.94  Aligned_cols=61  Identities=15%  Similarity=0.115  Sum_probs=44.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      +.+++.+.++       .++.+++++..+...|.. .+.+.++++.++| ++|+++|+||++++|.+.+.
T Consensus       130 ~~l~~~l~~~-------~~~~~v~l~~p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~~~~~~~  190 (354)
T 3ly1_A          130 EGLKAAVAAY-------SGPSIVYLVNPNNPTGTI-TPADVIEPWIASK-PANTMFIVDEAYAEFVNDPR  190 (354)
T ss_dssp             HHHHHHHHTC-------SSCEEEEEESSCTTTCCC-CCHHHHHHHHHTC-CTTEEEEEECTTGGGCCCTT
T ss_pred             HHHHHHhccC-------CCCCEEEEeCCCCCcCCC-cCHHHHHHHHHhC-CCCeEEEEeccHHHhccccc
Confidence            4556666543       367777776555555654 4666788888888 89999999999999987764

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=97.81  E-value=9.1e-05  Score=57.94  Aligned_cols=62  Identities=15%  Similarity=-0.057  Sum_probs=47.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +.+++.++++   +   .+..++++...+...|. ..+.+.++++.++|++||+++|.||+..+|...+
T Consensus       183 ~~l~~~l~~~---~---~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~  244 (420)
T 4f4e_A          183 DGMLAALNGY---E---PGTIVVLHACCHNPTGV-DLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESI  244 (420)
T ss_dssp             HHHHHHHTTC---C---TTCEEEEECSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCT
T ss_pred             HHHHHHHHhC---C---CCCEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHHCCcEEEEccccccccCCc
Confidence            3456666543   1   46777777777666665 4577889999999999999999999999997654

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=97.81  E-value=2.9e-05  Score=59.63  Aligned_cols=72  Identities=11%  Similarity=0.007  Sum_probs=45.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++        +++++++.|.  +.|    ....+++++++|++||+++|+||+++ +|+++.   .....+ 
T Consensus       153 ~~l~~~i~~~--------~~~~v~~~~~--~~~----~~~~l~~i~~l~~~~~~~li~Dea~~-~g~~~~---~~~~~~-  213 (405)
T 2vi8_A          153 DDVREKARLH--------RPKLIVAAAA--AYP----RIIDFAKFREIADEVGAYLMVDMAHI-AGLVAA---GLHPNP-  213 (405)
T ss_dssp             HHHHHHHHHH--------CCSEEEECCS--SCC----SCCCHHHHHHHHHHHTCEEEEECTTT-HHHHHT---TSSCCS-
T ss_pred             HHHHHHHHhc--------CCeEEEEeCC--CCC----ccCCHHHHHHHHHHcCCEEEEEcccc-cccccc---CcCCCc-
Confidence            3456666542        3466777542  222    22248999999999999999999999 555543   111122 


Q ss_pred             CC-CcCEE--EeecC
Q psy1628         103 DI-IPDIV--TVVWN  114 (114)
Q Consensus       103 ~v-~PDiv--t~gK~  114 (114)
                       + .+|++  +++|.
T Consensus       214 -~~~~di~~~s~sK~  227 (405)
T 2vi8_A          214 -VPYAHFVTTTTHKT  227 (405)
T ss_dssp             -TTTCSEEEEESSST
T ss_pred             -cccCCEEEEecccc
Confidence             2 57887  56773

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=97.81  E-value=7.7e-05  Score=60.63  Aligned_cols=65  Identities=22%  Similarity=0.102  Sum_probs=50.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCC-CcCEEEe
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDI-IPDIVTV  111 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v-~PDivt~  111 (114)
                      .+++++++.......|.+.+    ++++.++|++||+++++|++++|+..... .+.+...+  + .+|++++
T Consensus       258 ~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~vD~a~~~~~~~~~-~~~~~~~g--~~~aD~v~~  323 (515)
T 2jis_A          258 AVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHVDAAWGGSVLLSQ-THRHLLDG--IQRADSVAW  323 (515)
T ss_dssp             CEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTT--GGGCSEEEE
T ss_pred             CCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEEehhhhhHHHhCh-hhHhhcCC--CccCCEEEE
Confidence            36889999877666676654    88999999999999999999999876554 34444445  5 7899988

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=97.79  E-value=1.1e-05  Score=61.88  Aligned_cols=70  Identities=14%  Similarity=0.029  Sum_probs=49.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+++        .++.++++++.++..|...+    ++++.++|++||+++|+||+++. +..   .+..+.+  
T Consensus       128 ~~l~~~i~~--------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~-~~~---~~~~~~~--  189 (411)
T 3nnk_A          128 DQVEDAVKR--------IRPRLLLTVQGDTSTTMLQP----LAELGEICRRYDALFYTDATASL-GGN---PLETDVW--  189 (411)
T ss_dssp             HHHHHHHHH--------HCCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTTB-TTB---CCCTTTT--
T ss_pred             HHHHHHHhh--------CCCeEEEEeCCCCCcceecc----HHHHHHHHHHcCCEEEEECCccc-CCc---ccchhcc--
Confidence            345556654        26788999998887787755    77999999999999999999763 221   1223333  


Q ss_pred             CCCcCEEEee
Q psy1628         103 DIIPDIVTVV  112 (114)
Q Consensus       103 ~v~PDivt~g  112 (114)
                        .+|+++.+
T Consensus       190 --~~d~~~~s  197 (411)
T 3nnk_A          190 --GLDAVSAG  197 (411)
T ss_dssp             --TCSEEECC
T ss_pred             --CCcEEEec
Confidence              35777765

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=97.78  E-value=7.1e-05  Score=57.15  Aligned_cols=71  Identities=17%  Similarity=0.102  Sum_probs=49.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+++.       .++.++++++.+...|...+    ++++.++|++||+++|.||+++ +|...   +..+.   
T Consensus       123 ~~l~~~l~~~-------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~---  184 (392)
T 2z9v_A          123 QAVADMLKAH-------PEITVVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS-FGGMK---THPED---  184 (392)
T ss_dssp             HHHHHHHHHC-------TTCCEEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT-BTTBS---CCGGG---
T ss_pred             HHHHHHHhcC-------CCCcEEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc-cCCcc---ccccc---
Confidence            3455566542       36778999888776676654    7899999999999999999997 43222   12222   


Q ss_pred             CCCcCEEEee
Q psy1628         103 DIIPDIVTVV  112 (114)
Q Consensus       103 ~v~PDivt~g  112 (114)
                       ..+|+++.+
T Consensus       185 -~~~d~~~~s  193 (392)
T 2z9v_A          185 -CKADIYVTG  193 (392)
T ss_dssp             -GTCSEEEEC
T ss_pred             -ccceEEEec
Confidence             346888764

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=97.77  E-value=5.9e-05  Score=58.75  Aligned_cols=44  Identities=11%  Similarity=0.082  Sum_probs=38.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .+++++++++..+..|.+.+    ++++.++|++||+++|+||+++.+
T Consensus       148 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~~~  191 (398)
T 2rfv_A          148 PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFMSP  191 (398)
T ss_dssp             TTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTTCT
T ss_pred             CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc
Confidence            47899999998887787764    899999999999999999999843

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=97.74  E-value=9.3e-05  Score=56.72  Aligned_cols=61  Identities=11%  Similarity=0.007  Sum_probs=44.5

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV   90 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt   90 (114)
                      +.+++.++++.      .+..++++...+...|. ..+.+.++++.++|++||+++|.||+.++|...
T Consensus       161 ~~l~~~l~~~~------~~~~~v~~~~p~nptG~-~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~  221 (397)
T 3fsl_A          161 NDLLATLKTLQ------AGSIVLLHPCCHNPTGA-DLTNDQWDAVIEILKARELIPFLDIAYQGFGAG  221 (397)
T ss_dssp             HHHHHHHTTCC------TTCEEEECSSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSC
T ss_pred             HHHHHHHHhCC------CCCEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHhCCEEEEEecCchhhccC
Confidence            34556665531      35566665555554564 567778999999999999999999999999765

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=97.73  E-value=3.9e-05  Score=59.99  Aligned_cols=44  Identities=18%  Similarity=0.110  Sum_probs=38.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .+++++++|+..+..|...+    ++++.++|++||+++|+||+++.+
T Consensus       149 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~~  192 (398)
T 1gc0_A          149 PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYCTP  192 (398)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTTHH
T ss_pred             CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCccc
Confidence            57899999998877776653    899999999999999999999854

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=97.72  E-value=0.00017  Score=54.56  Aligned_cols=75  Identities=8%  Similarity=-0.053  Sum_probs=52.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++. ..   ++++++++++.+...|...+    ++++.++|++||+++|.||+++.+ ..+.   ....++ 
T Consensus       133 ~~l~~~l~~~~-~~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li~D~a~~~~-~~~~---~~~~~~-  199 (371)
T 2e7j_A          133 ENFAQTIEETK-KR---GEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYAIG-RMPV---SLKEIG-  199 (371)
T ss_dssp             HHHHHHHHHHT-TT---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTTBT-TBCC---CHHHHT-
T ss_pred             HHHHHHHHhhc-cc---CCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEEEECccccC-CCCC---ChhhcC-
Confidence            35566666542 11   37888999999887787665    499999999999999999999864 3332   233333 


Q ss_pred             CCCcCEEEe--ec
Q psy1628         103 DIIPDIVTV--VW  113 (114)
Q Consensus       103 ~v~PDivt~--gK  113 (114)
                         +|+++.  +|
T Consensus       200 ---~di~~~s~sK  209 (371)
T 2e7j_A          200 ---ADFIVGSGHK  209 (371)
T ss_dssp             ---CSEEEEEHHH
T ss_pred             ---CCEEEecCCc
Confidence               677765  55

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=97.72  E-value=0.00013  Score=58.89  Aligned_cols=65  Identities=15%  Similarity=0.070  Sum_probs=48.7

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCC-CcCEEEe--ec
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDI-IPDIVTV--VW  113 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v-~PDivt~--gK  113 (114)
                      .+.++++.......|..    +.+++|.++|++||+++++||++.|+.....  +.+...+  + .+|++++  .|
T Consensus       258 ~~~~vv~~~~~~~tG~~----~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~--~~~~~~g--i~~~D~i~~s~hK  325 (497)
T 2qma_A          258 IPFAIVGTAGTTDHGAI----DDLDFIADMAVKHDMWMHVDGAYGGALILSS--HKSRLKG--VERAHSISVDFHK  325 (497)
T ss_dssp             EEEEEEEEBSCTTTCCB----CCHHHHHHHHHHHTCEEEEEETTGGGGGGST--TGGGGTT--GGGCSEEEEETTT
T ss_pred             cceEEEEcCCCCCCCCC----CCHHHHHHHHHHcCCEEEEehhhhHHHHhCc--chHhhcC--cccCCEEEEcchh
Confidence            35677776665555653    4489999999999999999999999876553  3334445  6 7899988  56

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=97.70  E-value=4.5e-05  Score=57.24  Aligned_cols=45  Identities=9%  Similarity=0.000  Sum_probs=39.1

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ++++++++|. .+.|. .++.++++++.++|++||+++|+||++..+
T Consensus       141 ~~~~v~~~~~-~~tG~-~~~~~~l~~i~~~~~~~~~~li~D~a~~~~  185 (356)
T 1v72_A          141 QPACVSITQA-TEVGS-IYTLDEIEAIGDVCKSSSLGLHMDGSRFAN  185 (356)
T ss_dssp             EEEEEEEESS-CTTSC-CCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred             CceEEEEEcC-CCCCc-cCCHHHHHHHHHHHHHcCCeEEEEchhhHh
Confidence            7899999995 45675 568899999999999999999999998754

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=97.68  E-value=0.00016  Score=54.13  Aligned_cols=72  Identities=14%  Similarity=0.133  Sum_probs=46.0

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.++++       .++.++++.......|...+    ++++.++|++||+++|+||+++ ++....   ..+.   
T Consensus       120 ~~l~~~l~~~-------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~~~~~~---~~~~---  181 (366)
T 1m32_A          120 QAIDAILNAD-------PTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIPM---DIAA---  181 (366)
T ss_dssp             HHHHHHHHHC-------TTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSCC---CTTT---
T ss_pred             HHHHHHHhcC-------CCeEEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcc-ccCcCc---cccc---
Confidence            3456666653       24455555444444465555    7899999999999999999997 444331   2221   


Q ss_pred             CCCcCEEEe--ec
Q psy1628         103 DIIPDIVTV--VW  113 (114)
Q Consensus       103 ~v~PDivt~--gK  113 (114)
                       ..+|+++.  +|
T Consensus       182 -~~~di~~~s~~K  193 (366)
T 1m32_A          182 -LHIDYLISSANK  193 (366)
T ss_dssp             -TTCSEEEEESSS
T ss_pred             -cCccEEEecCcc
Confidence             34788865  46

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=97.67  E-value=5.7e-05  Score=58.74  Aligned_cols=72  Identities=13%  Similarity=0.027  Sum_probs=50.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCccchhhhhcC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGTHWWAFQLQG  101 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~~~~~~~~~g  101 (114)
                      +.+++.+++..      +++.++++++..|       +...++++.++|+++|+++|.||+++ |+...|. ..+  .++
T Consensus       110 ~~l~~~i~~~~------~~~~~v~~~~~~G-------~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~-~~~--~~~  173 (394)
T 1o69_A          110 DLLKLAIKECE------KKPKALILTHLYG-------NAAKMDEIVEICKENDIVLIEDAAEALGSFYKNK-ALG--TFG  173 (394)
T ss_dssp             HHHHHHHHHCS------SCCCEEEEECGGG-------CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-ETT--SSS
T ss_pred             HHHHHHHhccc------CCceEEEEECCCC-------ChhhHHHHHHHHHHcCCEEEEECcCcccceeCCc-ccc--ccc
Confidence            34566665531      3678899988544       34678999999999999999999999 8765554 211  111


Q ss_pred             CCCCcCEEEeec
Q psy1628         102 DDIIPDIVTVVW  113 (114)
Q Consensus       102 ~~v~PDivt~gK  113 (114)
                         .+|+.+++|
T Consensus       174 ---~~~~~s~s~  182 (394)
T 1o69_A          174 ---EFGVYSYNG  182 (394)
T ss_dssp             ---SEEEEECCT
T ss_pred             ---CcEEEEEeC
Confidence               367887754

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=97.64  E-value=9.9e-05  Score=56.94  Aligned_cols=47  Identities=9%  Similarity=-0.111  Sum_probs=36.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .++.++++...+...|. ..+.+.++++.++|++||+++|.||++..+
T Consensus       179 ~~~~~v~~~~p~NptG~-~~~~~~~~~l~~~a~~~~~~li~De~~~~~  225 (417)
T 3g7q_A          179 EETGMICVSRPTNPTGN-VITDEELMKLDRLANQHNIPLVIDNAYGVP  225 (417)
T ss_dssp             TTEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCTT
T ss_pred             cCceEEEECCCCCCCCC-ccCHHHHHHHHHHHHHcCCEEEEeCCCccc
Confidence            45677777655555665 456666999999999999999999999643

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=97.62  E-value=0.00012  Score=57.35  Aligned_cols=46  Identities=7%  Similarity=-0.100  Sum_probs=36.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++.++++...+...|. ..+.+.++++.++|++||+++|.||++..
T Consensus       205 ~~~~~v~i~~p~nptG~-~~~~~~l~~i~~~a~~~~~~li~De~~~~  250 (444)
T 3if2_A          205 GRIGAICCSRPTNPTGN-VLTDEEMAHLAEIAKRYDIPLIIDNAYGM  250 (444)
T ss_dssp             TCEEEEEEESSCTTTCC-CCCHHHHHHHHHHHHHTTCCEEEECTTCT
T ss_pred             CCceEEEeCCCCCCCCC-cCCHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            46777777544555565 45677799999999999999999999964

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=97.61  E-value=8.9e-05  Score=56.91  Aligned_cols=51  Identities=18%  Similarity=0.199  Sum_probs=40.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.+.+        +++.+++++..++..|...+    ++++.++|++||+++|+||+++
T Consensus       126 ~~l~~~i~~--------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~  176 (416)
T 3isl_A          126 EDIIREIKK--------VKPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAVAT  176 (416)
T ss_dssp             HHHHHHHHH--------HCCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHhh--------CCCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECCcc
Confidence            345666654        25688899988887787665    7899999999999999999987

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=97.61  E-value=3.8e-05  Score=58.25  Aligned_cols=44  Identities=18%  Similarity=0.153  Sum_probs=37.2

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++++++++.++..|....+.+.++++.++|++||+++|+||.+.
T Consensus       136 ~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~  179 (357)
T 3lws_A          136 IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARL  179 (357)
T ss_dssp             CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred             cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence            78899998776543367789999999999999999999999764

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=97.60  E-value=6.7e-05  Score=57.37  Aligned_cols=60  Identities=20%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      ++.+++++......|...+    ++++.++|+++|+++|+||+++ +|...   +..+.    ..+|+++.+
T Consensus       143 ~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g~~~---~~~~~----~~~d~~~~s  202 (396)
T 2ch1_A          143 QPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LCGVP---FYMDK----WEIDAVYTG  202 (396)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT----TTCCEEECC
T ss_pred             CCCEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-ccCCc---cchhh----cCcCEEEEc
Confidence            4667888777666676665    7899999999999999999987 55332   12222    346887765

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=97.60  E-value=0.00017  Score=55.18  Aligned_cols=60  Identities=20%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+..++++++.++..|...+    ++++.++|++||+++|.||+++ ++..     ......  . +|+++.+
T Consensus       158 ~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~~-~~~~-----~~~~~~--~-~d~~~~s  217 (400)
T 3vax_A          158 PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQG-YGKV-----PGDLTT--P-IDMISIS  217 (400)
T ss_dssp             TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTTT-TTTS-----GGGGGS--C-CSEEEEE
T ss_pred             CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhhh-cCCC-----CcChhh--c-CcEEEEe
Confidence            57889999998887786655    6899999999999999999997 2221     122223  4 8998887

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=97.58  E-value=0.00019  Score=54.98  Aligned_cols=68  Identities=15%  Similarity=0.151  Sum_probs=44.1

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhh-hhcCCCCCcCEEEeecC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAF-QLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~-~~~g~~v~PDivt~gK~  114 (114)
                      ++++++++..+...|... +.   ++++++|+.+++++|.||++++|++... .+.. +.++ +..+++.+++|.
T Consensus       164 ~~~~v~~~~~~nptG~~~-~~---~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~-~~~i~~~s~sK~  232 (369)
T 3cq5_A          164 QPDIVFVTTPNNPTGDVT-SL---DDVERIINVAPGIVIVDEAYAEFSPSPS-ATTLLEKYP-TKLVVSRTMSKA  232 (369)
T ss_dssp             CCSEEEEESSCTTTCCCC-CH---HHHHHHHHHCSSEEEEECTTGGGCCSCC-GGGGTTTCT-TTEEEEEESSST
T ss_pred             CCCEEEEeCCCCCCCCCC-CH---HHHHHHHHhCCCEEEEECCchhhcCCcc-hHHHHhhCC-CCEEEEEechHh
Confidence            567888877777677655 44   4556666677799999999999976433 3332 2111 023556677774

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=97.57  E-value=0.00023  Score=56.61  Aligned_cols=61  Identities=13%  Similarity=0.074  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .+++.+.+..      .+...+++...+...|. ..+.+.++++.++|++||+++|.||+..+|+..+
T Consensus       191 ~l~~~l~~~~------~~~~~v~~~~p~NPtG~-~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~  251 (448)
T 3meb_A          191 NTKKDIQSAP------EKSIFLFHACAHNPSGI-DFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGS  251 (448)
T ss_dssp             HHHHHHHHSC------TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSC
T ss_pred             HHHHHHHhCC------CCcEEEEeCCCCCCCCc-CCCHHHHHHHHHHHHHCCCEEEEecccccccCCC
Confidence            4555555531      23344343333333454 5677889999999999999999999999997665

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=97.57  E-value=0.00026  Score=57.57  Aligned_cols=67  Identities=16%  Similarity=0.030  Sum_probs=47.9

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .+++.+.+        +.+.++++|+..+..|.+.+    ++++.++|++||+++|+||+++..    . .  .....  
T Consensus       191 ~l~~ai~~--------~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a~~~~----~-~--~~~~~--  249 (445)
T 1qgn_A          191 ALELALNQ--------KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTFATP----L-N--QKALA--  249 (445)
T ss_dssp             HHHHHHHH--------SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTTCT----T-T--CCTTT--
T ss_pred             HHHHHhcc--------CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCccc----c-c--CCccc--
Confidence            45555553        34589999998877776654    789999999999999999999732    1 1  12233  


Q ss_pred             CCcCEEEe
Q psy1628         104 IIPDIVTV  111 (114)
Q Consensus       104 v~PDivt~  111 (114)
                      ..+|+++.
T Consensus       250 ~g~Div~~  257 (445)
T 1qgn_A          250 LGADLVLH  257 (445)
T ss_dssp             TTCSEEEE
T ss_pred             cCCEEEEE
Confidence            56798873

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=97.56  E-value=8.3e-05  Score=56.78  Aligned_cols=60  Identities=17%  Similarity=0.119  Sum_probs=43.7

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      ++.+++++......|...+    ++++.++|++||+++|+||+++ ++...   +..+.    ..+|+++.+
T Consensus       144 ~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~~~~---~~~~~----~~~d~~~~s  203 (393)
T 2huf_A          144 KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LGGAP---MFMDR----WEIDAMYTG  203 (393)
T ss_dssp             CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BTTBC---CCTTT----TTCSEEECC
T ss_pred             CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---cchhh----cCccEEEEC
Confidence            4567888887776777665    7899999999999999999975 54332   12222    347888875

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=97.56  E-value=0.00019  Score=55.17  Aligned_cols=61  Identities=21%  Similarity=0.152  Sum_probs=45.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.++++++.++..|...+    ++++.++|+++|+++|+||+++ +|...   +..+.++    +|+++.+
T Consensus       164 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g~~~---~~~~~~~----~d~~~~s  224 (406)
T 3cai_A          164 KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSAA-APYRL---LDIRETD----ADVVTVN  224 (406)
T ss_dssp             TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTTT-TTTCC---CCHHHHC----CSEEEEE
T ss_pred             CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cCCCC---CCchhcC----CCEEEee
Confidence            47889999998887787665    6899999999999999999997 33221   2333333    6887764

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=97.56  E-value=8.6e-05  Score=55.81  Aligned_cols=43  Identities=12%  Similarity=0.130  Sum_probs=37.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA-AGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~-~gillI~DEV~tG   86 (114)
                      +++.++++++.++..|...+    ++++.++|++ +|+++|+||+++.
T Consensus        82 ~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~  125 (331)
T 1pff_A           82 PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFAS  125 (331)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTH
T ss_pred             CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCcc
Confidence            57899999998887787664    8999999999 9999999999973

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=97.55  E-value=0.00025  Score=53.71  Aligned_cols=60  Identities=13%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA--GGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~--gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      ++.++++++.+...|...+    ++++.++|++|  |+++|.||+++ ++...   +..+.    ..+|+++.+
T Consensus       137 ~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~~~li~D~a~~-~~~~~---~~~~~----~~~d~~~~s  198 (385)
T 2bkw_A          137 SYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS-IGCEE---FEFDE----WGVDFALTA  198 (385)
T ss_dssp             CCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT-TTTSC---CCTTT----TTCSEEEEE
T ss_pred             CCCEEEEEccCCCcCeEcC----HHHHHHHHHhhCCCCEEEEECccc-cCCcc---ccccc----cCceEEEec
Confidence            5678899988877787665    78999999999  99999999997 33221   12222    346887764

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=97.55  E-value=0.00024  Score=57.38  Aligned_cols=53  Identities=9%  Similarity=-0.022  Sum_probs=43.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++|+.+++......+...++++.++|++  +|+++|+||++..+.....
T Consensus       164 ~~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~  218 (431)
T 3ht4_A          164 SNTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE  218 (431)
T ss_dssp             TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC
T ss_pred             CCCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC
Confidence            5789999997555444457788899999999999  9999999999998865443

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=97.54  E-value=7.4e-05  Score=57.32  Aligned_cols=58  Identities=14%  Similarity=0.072  Sum_probs=41.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      +++++++.+...|       ....+++++++|++||+++|.||+++ |....|+      ..+  ..+|++++|
T Consensus       122 ~~~~~v~~~~~~G-------~~~~~~~i~~la~~~~~~li~D~a~~~g~~~~~~------~~~--~~~di~~~S  180 (367)
T 3nyt_A          122 PRTKAIIPVSLYG-------QCADFDAINAIASKYGIPVIEDAAQSFGASYKGK------RSC--NLSTVACTS  180 (367)
T ss_dssp             TTEEEECCBCGGG-------CCCCHHHHHHHHHHTTCCBEEECTTTTTCEETTE------ETT--SSSSEEEEE
T ss_pred             cCCcEEEeeCCcc-------ChhhHHHHHHHHHHcCCEEEEECccccCCeECCe------ecc--CCCCEEEEE
Confidence            5788888655443       23458999999999999999999997 4433343      223  334999987

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=97.50  E-value=0.00014  Score=57.86  Aligned_cols=30  Identities=13%  Similarity=0.165  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhCCeEEEcccc-ccccccCc
Q psy1628          63 YLREVYKHVRAAGGVCVADEVQ-VGFGRVGT   92 (114)
Q Consensus        63 fl~~lr~lc~~~gillI~DEV~-tGfgRtG~   92 (114)
                      ++++++++|++||+++|+||++ +|+...|.
T Consensus       201 ~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~  231 (447)
T 3h7f_A          201 DFAAFRSIADEVGAKLLVDMAHFAGLVAAGL  231 (447)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTHHHHHTTS
T ss_pred             CHHHHHHHHHHcCCEEEEECCchhhhhcCCC
Confidence            8899999999999999999996 66655554

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=97.49  E-value=0.0002  Score=54.76  Aligned_cols=59  Identities=19%  Similarity=0.128  Sum_probs=40.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.++++....   |..    ..++++.++|++||+++|.||+++-    |. .+..+.++  ..+|+++++
T Consensus       123 ~~~~~v~~~n~~---G~~----~~l~~i~~l~~~~~~~li~D~a~~~----g~-~~~~~~~~--~~~d~~~~S  181 (373)
T 3frk_A          123 EKTKAIIAVHLY---GQP----ADMDEIKRIAKKYNLKLIEDAAQAH----GS-LYKGMKVG--SLGDAAGFS  181 (373)
T ss_dssp             TTEEEEEEECCT---TCC----CCHHHHHHHHHHHTCEEEEECTTCT----TC-EETTEETT--SSSSEEEEE
T ss_pred             CCCeEEEEECCC---cCc----ccHHHHHHHHHHcCCEEEEECCccc----CC-EECCEecc--ccccEEEEe
Confidence            467777744333   322    3478999999999999999999972    22 22233445  557999998

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=97.49  E-value=0.00016  Score=58.11  Aligned_cols=63  Identities=14%  Similarity=-0.073  Sum_probs=43.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc-cCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR-VGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR-tG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.++++.+ +...|...+    ++++.++|++||+++|+||++++..+ .+. .+....    ..+|+++.+
T Consensus       145 ~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~~f~~~-~~~~~~----~g~Di~~~S  208 (446)
T 2x3l_A          145 DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHFGLQGF-PDSTLN----YQADYVVQS  208 (446)
T ss_dssp             --CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTTTSTTS-CCCGGG----GTCSEEEEC
T ss_pred             CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhhccCCC-CCChHH----cCCCEEEEC
Confidence            3567888888 555676654    78999999999999999999987322 221 122222    347898877

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=97.48  E-value=0.00015  Score=55.29  Aligned_cols=64  Identities=17%  Similarity=0.157  Sum_probs=42.4

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++++..+...|...+.    ++++++|+++|+++|.||++++|...+. ....+.++  ....+.+++|.
T Consensus       152 ~v~i~~p~nptG~~~~~----~~l~~l~~~~~~~li~De~~~~~~~~~~-~~~~~~~~--~~i~~~s~sK~  215 (360)
T 3hdo_A          152 VFFLTTPNAPLGPSFPL----EYIDELARRCAGMLVLDETYAEFAESNA-LELVRRHE--NVVVTRTLSKS  215 (360)
T ss_dssp             EEEEESSCTTTCCCCCH----HHHHHHHHHBSSEEEEECTTGGGSSCCC-THHHHHCS--SEEEEEESTTT
T ss_pred             EEEEeCCCCCCCCCcCH----HHHHHHHHHCCCEEEEECChHhhCCcch-hHHhccCC--CEEEEecchHh
Confidence            55555445555665554    4688899999999999999999854433 22333444  44556667774

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=97.48  E-value=0.00019  Score=54.49  Aligned_cols=59  Identities=14%  Similarity=0.027  Sum_probs=40.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.+++  |..- .|...    .++++.++|++||+++|.||+++.+    . .+..+..+  ..+|+++++
T Consensus       124 ~~~~~v~--~~n~-~G~~~----~~~~i~~~~~~~~~~li~D~~~~~g----~-~~~~~~~~--~~~d~~~~s  182 (374)
T 3uwc_A          124 DKTKAIM--PVHY-TGNIA----DMPALAKIAKKHNLHIVEDACQTIL----G-RINDKFVG--SWGQFACFS  182 (374)
T ss_dssp             TTEEEEC--CBCG-GGCCC----CHHHHHHHHHHTTCEEEEECTTCTT----C-EETTEETT--SSSSEEEEE
T ss_pred             CCceEEE--EeCC-cCCcC----CHHHHHHHHHHcCCEEEEeCCCccC----c-eeCCeecc--ccccEEEEe
Confidence            3566666  4332 24332    3889999999999999999999843    2 23334455  567999998

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=97.43  E-value=0.00065  Score=54.82  Aligned_cols=66  Identities=18%  Similarity=0.051  Sum_probs=46.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCC-CcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDI-IPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v-~PDivt~g  112 (114)
                      .++.++++.......|.+.+    +++|.++|++||+++++|+++.|+..... -+.....+  + .+|+++++
T Consensus       244 ~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~lhvD~a~~~~~~~~~-~~~~~~~g--~~~~D~i~~~  310 (504)
T 2okj_A          244 YVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVDAAWGGGLLMSR-KHRHKLNG--IERANSVTWN  310 (504)
T ss_dssp             CEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCEEEEEETTGGGGGGCT-TTGGGGTT--GGGCSEEEEC
T ss_pred             CCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEehhhhhHHHhCH-hhHhhcCC--cccCCEEEEC
Confidence            36888888665555565533    88999999999999999999998854332 22223333  4 67998875

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=97.43  E-value=0.00018  Score=57.82  Aligned_cols=63  Identities=14%  Similarity=0.004  Sum_probs=44.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEe--ec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTV--VW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~--gK  113 (114)
                      +++++++++. +...|..   .+.++++.++|++||+++|+||++..+ ..|. . ....+    .+|++++  +|
T Consensus       202 ~~t~~v~~~~-pn~~G~~---~~~l~~i~~l~~~~g~~li~Dea~~~~-~~g~-~-~~~~~----g~di~~~s~~K  266 (474)
T 1wyu_B          202 PHVAALMLTN-PNTLGLF---ERRILEISRLCKEAGVQLYYDGANLNA-IMGW-A-RPGDM----GFDVVHLNLHK  266 (474)
T ss_dssp             TTEEEEEECS-SCTTSCC---CTTHHHHHHHHHHHTCEEEEEGGGGGG-TTTT-C-CHHHH----TCSEEECCTTT
T ss_pred             CCceEEEEEC-CCCCccc---CCCHHHHHHHHHHcCCEEEEeCchhhh-hccC-C-CcccC----CCcEEEEeCcc
Confidence            5789999987 3445655   246899999999999999999999533 2332 1 11222    3688887  56

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=97.39  E-value=0.00022  Score=55.00  Aligned_cols=59  Identities=15%  Similarity=0.063  Sum_probs=43.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCccchhhhhcCCCCCcCEEEeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGTHWWAFQLQGDDIIPDIVTVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~~~~~~~~~g~~v~PDivt~gK  113 (114)
                      .++.++++....|+       +..++++.++|++||+++|.||+++ |...      ..+.+|  ..+|+.+++|
T Consensus       127 ~~~~~v~~~~~~g~-------~~~~~~i~~l~~~~~~~li~D~a~~~g~~~------~~~~~g--~~~~~~~~s~  186 (390)
T 3b8x_A          127 DSTKAILTVNLLGN-------PNNFDEINKIIGGRDIILLEDNCESMGATF------NNKCAG--TFGLMGTFSS  186 (390)
T ss_dssp             TTEEEEEEECGGGC-------CCCHHHHHHHHTTSCCEEEEECTTCTTCEE------TTEETT--SSSSEEEEEC
T ss_pred             cCCeEEEEECCccC-------hhhHHHHHHHHHHcCCEEEEECcCcccCEE------CCcccc--cccceEEEEc
Confidence            46777877543332       2568999999999999999999998 4322      223456  7789999886

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=97.38  E-value=0.00046  Score=54.75  Aligned_cols=53  Identities=11%  Similarity=-0.002  Sum_probs=44.2

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.++++.      .++++++++..+...|...+    ++++.++|++||+++|+|++++
T Consensus       202 ~~l~~~i~~~~------~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~  254 (465)
T 3e9k_A          202 EDILEVIEKEG------DSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHA  254 (465)
T ss_dssp             HHHHHHHHHHG------GGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHHhcC------CCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhh
Confidence            45666776652      58999999999988887765    6899999999999999999987

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=97.38  E-value=8e-05  Score=59.62  Aligned_cols=47  Identities=9%  Similarity=-0.144  Sum_probs=39.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRV   90 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRt   90 (114)
                      .++++++++......|...+    +++++++|++||+++|+||+++|+.+.
T Consensus       205 ~~~~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~  251 (497)
T 3mc6_A          205 KNTVLLVGSAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVS  251 (497)
T ss_dssp             SSEEEEEEETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHG
T ss_pred             hCCEEEEEECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhh
Confidence            46889999988777776654    668999999999999999999987553

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=97.33  E-value=0.00042  Score=54.53  Aligned_cols=46  Identities=9%  Similarity=0.003  Sum_probs=40.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCeEEEccccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA----GGVCVADEVQVGFGR   89 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~----gillI~DEV~tGfgR   89 (114)
                      .++.+++++...+..|.+.+    ++++.++|+++    |+++|.||+++.+.+
T Consensus       137 ~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD~a~~~~~~  186 (393)
T 1n8p_A          137 ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVDNTFLSPYI  186 (393)
T ss_dssp             SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEECTTTHHHH
T ss_pred             cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEeCCcccccc
Confidence            47889999998887787664    89999999999    999999999997754

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=97.31  E-value=0.00056  Score=51.40  Aligned_cols=45  Identities=13%  Similarity=0.197  Sum_probs=37.7

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++.++++++.+...|-...+.+.++++.++|++||+++|+||.+.
T Consensus       132 ~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~  176 (347)
T 1jg8_A          132 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARI  176 (347)
T ss_dssp             CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTH
T ss_pred             CceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhh
Confidence            688999988876552256778899999999999999999999764

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=97.29  E-value=0.00038  Score=54.08  Aligned_cols=62  Identities=18%  Similarity=0.259  Sum_probs=46.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC----------CeEEEccccccccccCccchhhhhcCCCCCcCEE
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG----------GVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIV  109 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g----------illI~DEV~tGfgRtG~~~~~~~~~g~~v~PDiv  109 (114)
                      .++.++++++.....|...+    ++++.++|+++|          +++|+||++ ++++...   ....    ..+|++
T Consensus       174 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~~~~~~~livDea~-~~~~~~~---~~~~----~~~d~~  241 (432)
T 3a9z_A          174 PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRAASGLPRVLVHTDAAQ-ALGKRRV---DVED----LGVDFL  241 (432)
T ss_dssp             TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHHHHTCCCCEEEEECTT-TTTTSCC---CHHH----HCCSEE
T ss_pred             CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccccccCCceEEEEEchh-hhCCccc---Chhh----cCCCEE
Confidence            46889999998877787766    468999999999          999999999 4555432   2222    347888


Q ss_pred             Ee--ec
Q psy1628         110 TV--VW  113 (114)
Q Consensus       110 t~--gK  113 (114)
                      +.  +|
T Consensus       242 ~~s~~K  247 (432)
T 3a9z_A          242 TIVGHK  247 (432)
T ss_dssp             EEEGGG
T ss_pred             EEehhH
Confidence            76  55

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=97.22  E-value=0.00071  Score=54.60  Aligned_cols=42  Identities=24%  Similarity=0.172  Sum_probs=36.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.++++|...+..|...+    ++++.++|+++|+++|+||+++
T Consensus       166 ~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~~  207 (430)
T 3ri6_A          166 ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTMT  207 (430)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTS
T ss_pred             CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            57899999988776676553    7799999999999999999986

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=97.22  E-value=0.00076  Score=50.39  Aligned_cols=60  Identities=13%  Similarity=0.066  Sum_probs=43.6

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh--CCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA--GGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~--gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      ++.+++++..+...|...+    ++++.++|++|  |+++|.||+++ +|...   +..+.    ..+|+++.+
T Consensus       121 ~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~~~~~---~~~~~----~~~d~~~~s  182 (352)
T 1iug_A          121 GYAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LLVGE---VALEA----MGVDAAASG  182 (352)
T ss_dssp             SCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BTTBC---CCSGG----GTCSEEEEE
T ss_pred             CCcEEEEEEecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-ccCcc---eeccc----cCeeEEEec
Confidence            4678888887777776655    78999999999  99999999986 44332   12222    236888765

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=97.21  E-value=0.0004  Score=53.43  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=39.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.++++....   |..    ..++++.++|+++|+++|.||+++-    |. .+.....+  ..+|+++++
T Consensus       143 ~~~~~v~~~n~t---G~~----~~~~~i~~l~~~~~~~li~D~a~~~----g~-~~~~~~~~--~~~di~~~S  201 (391)
T 3dr4_A          143 PRTKAIMPVHLY---GQI----CDMDPILEVARRHNLLVIEDAAEAV----GA-TYRGKKSG--SLGDCATFS  201 (391)
T ss_dssp             TTEEEECCBCGG---GCC----CCHHHHHHHHHHTTCEEEEECTTCT----TC-EETTEETT--SSSSEEEEE
T ss_pred             CCceEEEEECCC---CCh----hhHHHHHHHHHHcCCEEEEECcccc----cc-eECCeeec--ccCCEEEEE
Confidence            467777754333   322    3488999999999999999999972    21 11122234  456898888

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=97.16  E-value=0.0007  Score=55.63  Aligned_cols=70  Identities=11%  Similarity=-0.147  Sum_probs=47.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHH-HhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVR-AAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~-~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK  113 (114)
                      .++.++++.....-.| ...+.+.++++.++|+ +||+++|.||++.+|...+. .......+  ....+.+++|
T Consensus       243 ~~~k~v~l~~p~NPtG-~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~-~~~~~~~~--~~i~~~S~SK  313 (533)
T 3f6t_A          243 PSIKALIVVNPTNPTS-KEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFK-SIYSVVPY--NTMLVYSYSK  313 (533)
T ss_dssp             TTEEEEEEESSCTTTC-BCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCC-CHHHHSGG--GEEEEEESHH
T ss_pred             CCCeEEEEeCCCCCCc-cccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCcc-CHhhcCCC--CEEEEecCcc
Confidence            4677777653333345 4557788999999999 68999999999999976554 22222222  4456667776

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=97.14  E-value=0.0011  Score=52.20  Aligned_cols=45  Identities=18%  Similarity=0.135  Sum_probs=38.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH-hCCeEEEcccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA-AGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~-~gillI~DEV~tGfg   88 (114)
                      .++.+++++...+..|.+.+    ++++.++|++ +|+++|+||+++.+.
T Consensus       146 ~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~  191 (404)
T 1e5e_A          146 PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPM  191 (404)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTT
T ss_pred             CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhh
Confidence            47889999988777776663    8999999999 999999999999774

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=97.14  E-value=0.0005  Score=52.55  Aligned_cols=57  Identities=14%  Similarity=0.093  Sum_probs=42.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.++++.+..|.   . .   .++++.++|+++|+++|.||+++ |+...|. .     ++  . +|+++++
T Consensus       126 ~~~~~v~~~~~~G~---~-~---~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~-~-----~~--~-~d~~~~S  183 (393)
T 1mdo_A          126 PQTKAIIPVHYAGA---P-A---DLDAIYALGERYGIPVIEDAAHATGTSYKGR-H-----IG--A-RGTAIFS  183 (393)
T ss_dssp             TTEEEECCBCGGGC---C-C---CHHHHHHHHHHHTCCBCEECTTCTTCEETTE-E-----TT--S-SSEEEEE
T ss_pred             CCceEEEEeCCCCC---c-C---CHHHHHHHHHHcCCeEEEECccccCCeECCe-e-----cC--C-CCeEEEe
Confidence            46788888875442   2 2   38999999999999999999998 5534443 1     23  3 7999887

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=97.13  E-value=0.0015  Score=50.21  Aligned_cols=50  Identities=16%  Similarity=0.074  Sum_probs=37.2

Q ss_pred             CceEEEEE-cccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFA-ESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAvii-EPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++ .|. ...| ...+.+.++++.++|++||+++|.||++..+...|
T Consensus       163 ~~~~~v~~~~p~-NPtG-~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~  213 (385)
T 1b5p_A          163 PRTKALVVNSPN-NPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG  213 (385)
T ss_dssp             TTEEEEEEESSC-TTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS
T ss_pred             CCCEEEEEeCCC-CCCC-CCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC
Confidence            35655555 553 2234 34577999999999999999999999999875544

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=97.12  E-value=0.0017  Score=49.95  Aligned_cols=51  Identities=14%  Similarity=0.095  Sum_probs=40.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .+...+++...+...|. ..+.+.++++.++|++||+++|.||+..+|+..+
T Consensus       174 ~~~~~v~i~~p~NPtG~-~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~  224 (401)
T 7aat_A          174 EKSIILLHACAHNPTGV-DPRQEQWKELASVVKKRNLLAYFDMAYQGFASGD  224 (401)
T ss_dssp             TTCEEEEESSSCTTTCC-CCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC
T ss_pred             CCcEEEEeCCCCCCCCC-CCCHHHHHHHHHHHHhCCcEEEEccccccccCCC
Confidence            46667777665554554 5678899999999999999999999999887654

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=97.08  E-value=0.0012  Score=53.64  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=37.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++.+++++...+..|.+.+    ++++.++|++||+++|+||+++.
T Consensus       216 ~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~  258 (464)
T 1ibj_A          216 PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMS  258 (464)
T ss_dssp             SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTC
T ss_pred             cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCcc
Confidence            57899999998877776663    89999999999999999999973

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=97.07  E-value=0.00098  Score=52.10  Aligned_cols=58  Identities=17%  Similarity=0.065  Sum_probs=42.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.++++....   |.    ...++++.++|+++|+++|.||+++ |+...|. .+     +  .-+|+++.+
T Consensus       137 ~~~~~v~~~~~t---G~----~~~l~~i~~la~~~~~~li~Dea~~~g~~~~~~-~~-----~--~~~di~~~S  195 (424)
T 2po3_A          137 PRTSAVVGVHLW---GR----PCAADQLRKVADEHGLRLYFDAAHALGCAVDGR-PA-----G--SLGDAEVFS  195 (424)
T ss_dssp             TTEEEEEEECGG---GC----CCCHHHHHHHHHHTTCEEEEECTTCTTCEETTE-ET-----T--SSSSEEEEE
T ss_pred             cCCcEEEEECCC---CC----cCCHHHHHHHHHHcCCEEEEECccccCCeECCe-ec-----c--cccCEEEEe
Confidence            467777765432   32    2578999999999999999999999 8876554 21     2  235888777

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=97.07  E-value=0.0015  Score=49.33  Aligned_cols=40  Identities=13%  Similarity=0.086  Sum_probs=30.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      .++.++++...   .|...+    ++++.++|++||+++|.||+++.
T Consensus       120 ~~~~~v~~~~~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~~  159 (375)
T 2fnu_A          120 ERTKAIVSVDY---AGKSVE----VESVQKLCKKHSLSFLSDSSHAL  159 (375)
T ss_dssp             TTEEEEEEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTCT
T ss_pred             cCceEEEEeCC---cCCccC----HHHHHHHHHHcCCEEEEECcccc
Confidence            45666555444   344433    68999999999999999999974

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=97.03  E-value=0.001  Score=52.52  Aligned_cols=44  Identities=14%  Similarity=0.080  Sum_probs=38.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhC-CeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAG-GVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~g-illI~DEV~tGf   87 (114)
                      .++.++++|......|.+.+    ++++.++|+++| +++|+||+++.+
T Consensus       150 ~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~~  194 (403)
T 3cog_A          150 PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMSP  194 (403)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTCT
T ss_pred             cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCccc
Confidence            47889999988777776664    899999999999 999999999875

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=97.02  E-value=0.0011  Score=49.77  Aligned_cols=41  Identities=12%  Similarity=0.058  Sum_probs=35.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+..++++++.+...|...+    ++++.++|++||+ +|.||+++
T Consensus       137 ~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~  177 (382)
T 4hvk_A          137 DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS  177 (382)
T ss_dssp             TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT
T ss_pred             cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh
Confidence            46789999998887786655    7899999999999 99999986

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=96.92  E-value=0.0018  Score=48.85  Aligned_cols=60  Identities=13%  Similarity=0.140  Sum_probs=43.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++.+++++..+...|...+    ++++.++|++||++ |.||+++ +|...   +....+    .+|+++.+
T Consensus       137 ~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~~---~~~~~~----~~di~~~s  196 (382)
T 4eb5_A          137 DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQIE---VDVEKI----GADMLTIS  196 (382)
T ss_dssp             TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTBC---CCHHHH----TCSEEEEE
T ss_pred             CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCcc---cCcccc----CCCEEEee
Confidence            46788888888777776654    68999999999999 9999997 54332   122222    36887764

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=96.84  E-value=0.0017  Score=50.29  Aligned_cols=58  Identities=16%  Similarity=0.072  Sum_probs=39.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc-ccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG-RVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg-RtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+++++++++..   |... +   ++++.++|+++|+++|.||+++.+. ..+.      .++  ..+|+++++
T Consensus       150 ~~~~~v~~~n~t---G~~~-~---l~~i~~l~~~~~~~li~Dea~~~g~~~~~~------~~~--~~~di~~~S  208 (399)
T 2oga_A          150 PRTRALLPVHLY---GHPA-D---MDALRELADRHGLHIVEDAAQAHGARYRGR------RIG--AGSSVAAFS  208 (399)
T ss_dssp             TTEEEECCBCGG---GCCC-C---HHHHHHHHHHHTCEECEECTTCTTCEETTE------ETT--CTTCEEEEE
T ss_pred             CCCeEEEEeCCc---CCcc-C---HHHHHHHHHHcCCEEEEECcccccCccCCe------ecc--cccCEEEEe
Confidence            467777765443   3332 2   8999999999999999999997331 2332      123  346999885

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=96.83  E-value=0.00099  Score=50.49  Aligned_cols=47  Identities=19%  Similarity=0.014  Sum_probs=35.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .++.+++++..+...|.. .+.+.++++.++| ++|+++|.||++++|.
T Consensus       152 ~~~~~v~~~~p~nptG~~-~~~~~l~~l~~~~-~~~~~li~De~~~~~~  198 (365)
T 3get_A          152 DEIKLIFLCLPNNPLGEC-LDASEATEFIKGV-NEDCLVVIDAAYNEFA  198 (365)
T ss_dssp             TTEEEEEEESSCTTTCCC-CCHHHHHHHHHTS-CTTSEEEEECTTHHHH
T ss_pred             CCCCEEEEcCCCCCCCCC-cCHHHHHHHHHhC-CCCcEEEEeCccHHHh
Confidence            467888886444445654 4666788888888 6799999999999876

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=96.45  E-value=0.0047  Score=47.99  Aligned_cols=43  Identities=7%  Similarity=0.020  Sum_probs=35.9

Q ss_pred             CceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCA-FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++.+ ++++..++.+|.   +...++++.++|++||+++|.||++.
T Consensus       139 ~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~  182 (374)
T 2aeu_A          139 DKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASG  182 (374)
T ss_dssp             CTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             CCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCcc
Confidence            46788 888877665565   67889999999999999999999654

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=96.45  E-value=0.0023  Score=48.99  Aligned_cols=46  Identities=13%  Similarity=0.141  Sum_probs=32.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc-cccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV-GFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-GfgRtG~   92 (114)
                      .++.+++  |.... |..    ..++++.++|++||+++|.||+++ |....|.
T Consensus       125 ~~~~~v~--~~n~t-G~~----~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~  171 (388)
T 1b9h_A          125 PRTKVIM--PVHMA-GLM----ADMDALAKISADTGVPLLQDAAHAHGARWQGK  171 (388)
T ss_dssp             TTEEEEC--CBCGG-GCC----CCHHHHHHHHHHHTCCBCEECTTCTTCEETTE
T ss_pred             cCceEEE--EeCCc-cCc----CCHHHHHHHHHHcCCEEEEecchhcCCccCCe
Confidence            3566666  65443 433    247999999999999999999998 4434443

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=96.39  E-value=0.0045  Score=48.11  Aligned_cols=42  Identities=12%  Similarity=0.008  Sum_probs=33.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .++.++++....|   ..    ..++++.++|++||+++|.||+++.+.
T Consensus       129 ~~~~~v~~~~~~G---~~----~~~~~i~~~~~~~~~~li~D~a~~~~~  170 (418)
T 2c81_A          129 DKTKAIIPVHLFG---SM----ANMDEINEIAQEHNLFVIEDCAQSHGS  170 (418)
T ss_dssp             TTEEEECCBCCTT---CC----CCHHHHHHHHHHTTCEEEEECTTCTTC
T ss_pred             CCCeEEEEeCCcC---Cc----ccHHHHHHHHHHCCCEEEEECcccccC
Confidence            4678888766443   22    458999999999999999999999775

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=96.28  E-value=0.012  Score=46.93  Aligned_cols=42  Identities=17%  Similarity=0.139  Sum_probs=35.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~t   85 (114)
                      .++.++++|......|.+.+    ++++.++|++  +|+++|+||++.
T Consensus       166 ~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD~a~a  209 (415)
T 2fq6_A          166 PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNTWA  209 (415)
T ss_dssp             TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECTTT
T ss_pred             cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEECCCc
Confidence            46788999887766665553    7899999999  999999999986

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=96.24  E-value=0.013  Score=47.50  Aligned_cols=48  Identities=19%  Similarity=0.068  Sum_probs=36.0

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      ++.++++.-.+.-.| ...+.+-++++.++|++||+++|+||+...+..
T Consensus       237 ~~k~ivl~~p~NPtG-~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~  284 (500)
T 3tcm_A          237 NVRALVVINPGNPTG-QVLAEENQYDIVKFCKNEGLVLLADEVYQENIY  284 (500)
T ss_dssp             EEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             CceEEEEECCCCCCc-ccCCHHHHHHHHHHHHHcCCEEEEecCcccccc
Confidence            666666553233344 456677899999999999999999999998643

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=96.20  E-value=0.0074  Score=49.95  Aligned_cols=50  Identities=16%  Similarity=0.067  Sum_probs=38.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHH--HHhCCeEEEcccccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHV--RAAGGVCVADEVQVGFGRV   90 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc--~~~gillI~DEV~tGfgRt   90 (114)
                      .++.++++..-+.-.| ...+.+.++++.++|  +++|+++|.||+...|...
T Consensus       244 ~~~k~v~l~~p~NPtG-~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~  295 (546)
T 2zy4_A          244 PAIKIFFCVNPSNPPS-VKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD  295 (546)
T ss_dssp             TTEEEEEEESSCSSSC-BCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT
T ss_pred             CCCeEEEEECCCCCCC-ccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc
Confidence            4677777774333345 456677899999999  8899999999999998653

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=96.09  E-value=0.022  Score=46.25  Aligned_cols=61  Identities=15%  Similarity=0.015  Sum_probs=43.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      +.+++.+++.. ..   .++.++++. -+++ .| ...+.+-++++.++|++||+++|.||+...+..
T Consensus       221 ~~le~~l~~~~-~~---~~~k~i~l~-np~NPTG-~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~  282 (498)
T 3ihj_A          221 NELRRAVQEAK-DH---CDPKVLCII-NPGNPTG-QVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVY  282 (498)
T ss_dssp             HHHHHHHHHHT-TT---SEEEEEEEE-SSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC
T ss_pred             HHHHHHHHhhh-cc---CCCeEEEEE-CCCCCCC-CcCCHHHHHHHHHHHHHcCcEEEEEcCcccccc
Confidence            45666666542 00   257777776 3344 34 456777899999999999999999999988743

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=95.95  E-value=0.0057  Score=46.09  Aligned_cols=50  Identities=10%  Similarity=0.058  Sum_probs=33.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.+++++..+...|...+ .+-++++.++|+++  ++|.||+++.|+..+.
T Consensus       128 ~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~~--~li~Dea~~~~~~~~~  177 (350)
T 3fkd_A          128 SNMDFCWLCNPNNPDGRLLQ-RTEILRLLNDHPDT--TFVLDQSYVSFTTEEV  177 (350)
T ss_dssp             TTCSEEEEESSCTTTCCCCC-HHHHHHHHHHCTTS--EEEEECTTTTSCSSCC
T ss_pred             CCCCEEEEeCCCCCcCCCCC-HHHHHHHHHhCCCC--EEEEECchhhhccCcc
Confidence            35666777544544565444 44466666666554  9999999999987775

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=95.86  E-value=0.0097  Score=44.70  Aligned_cols=64  Identities=13%  Similarity=0.080  Sum_probs=38.7

Q ss_pred             ceEEEE-EcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchh-hhhcCCCCCcCEEEeecC
Q psy1628          41 YPCAFF-AESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWA-FQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        41 ~iAAvi-iEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~-~~~~g~~v~PDivt~gK~  114 (114)
                      ++.+++ ..| +...|. ..+.+.++++.++|   | ++|.||++++|+.. . ... .+.++  ....+.+++|.
T Consensus       138 ~~~~v~l~~p-~nptG~-~~~~~~l~~l~~~~---~-~li~De~~~~~~~~-~-~~~~~~~~~--~~i~~~s~sK~  203 (335)
T 1uu1_A          138 EGDVVFIPNP-NNPTGH-VFEREEIERILKTG---A-FVALDEAYYEFHGE-S-YVDFLKKYE--NLAVIRTFSKA  203 (335)
T ss_dssp             TTEEEEEESS-CTTTCC-CCCHHHHHHHHHTT---C-EEEEECTTHHHHCC-C-CGGGGGTCS--SEEEEEESTTT
T ss_pred             CCCEEEEeCC-CCCCCC-CCCHHHHHHHHHhC---C-EEEEECcchhhcch-h-HHHHhhhCC--CEEEEecchhh
Confidence            456666 566 344454 45677777776666   8 99999999988532 2 222 12233  34455667774

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=95.68  E-value=0.05  Score=44.30  Aligned_cols=43  Identities=14%  Similarity=-0.055  Sum_probs=34.5

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .+.++++.-.....|.+.    =+++|.++|++||+.+++|+++.|.
T Consensus       248 ~~~~vv~~~~~~~~G~vd----~l~~I~~ia~~~~~~lhvD~a~~~~  290 (511)
T 3vp6_A          248 VPFYVNATAGTTVYGAFD----PIQEIADICEKYNLWLHVDAAWGGG  290 (511)
T ss_dssp             EEEEEEEEBSCSSSCCBC----CHHHHHHHHHHHTCEEEEEETTGGG
T ss_pred             CcEEEEEecCCCCCcccc----cHHHHHHHHHHcCCEEEEEccchhh
Confidence            477777776666566652    3799999999999999999999875

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=95.66  E-value=0.035  Score=44.11  Aligned_cols=58  Identities=16%  Similarity=0.137  Sum_probs=42.6

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEccc-CCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESL-QSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv-~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      .+++.+.+.       .+..++++-|- +.-.| ...+.+.++++.++|++|++++|.||+..+|..
T Consensus       163 ~l~~~l~~~-------~~~~~i~l~~~~~NPTG-~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~  221 (405)
T 3k7y_A          163 LFLNDLRNI-------PNGSSVILQISCYNPCS-VNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGH  221 (405)
T ss_dssp             HHHHHHHHS-------CSSCEEEECCSSCTTTC-CCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSS
T ss_pred             HHHHHHHhC-------CCCeEEEEeCCCCCCCC-CCCCHHHHHHHHHHHHHCCeEEEEecCcccccC
Confidence            455555543       24456777664 33344 467888999999999999999999999998853

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=95.59  E-value=0.0051  Score=45.90  Aligned_cols=43  Identities=9%  Similarity=0.105  Sum_probs=35.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh-CCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA-GGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~-gillI~DEV~tG   86 (114)
                      .++.++++...+...|...+    ++++.++|++| |+++|.||+++-
T Consensus       129 ~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~p~~~li~D~a~~~  172 (362)
T 3ffr_A          129 ADAEIICLTHNETSSGVSMP----VEDINTFRDKNKDALIFVDAVSSL  172 (362)
T ss_dssp             TTCCEEEEESEETTTTEECC----HHHHTTSGGGSTTSEEEEECTTTT
T ss_pred             CCccEEEEEcCCCCcceeCC----HHHHHHHHHhCCCCEEEEeccccc
Confidence            46788888877666676665    88899999999 999999999863

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=94.97  E-value=0.13  Score=41.42  Aligned_cols=58  Identities=10%  Similarity=0.001  Sum_probs=39.7

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEccccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQVGF   87 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGf   87 (114)
                      +.+++.+.++       .++.++++++..+.......+..-++++.++|++  +|+++|+||.+..+
T Consensus       165 e~l~~~i~~~-------~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~  224 (427)
T 3hvy_A          165 NTVKEELKKD-------DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEF  224 (427)
T ss_dssp             HHHHHHHHHC-------TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTT
T ss_pred             HHHHHHhhCC-------CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCcccc
Confidence            3456666543       4788999999432111112234568999999999  89999999997543

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=94.82  E-value=0.16  Score=40.81  Aligned_cols=43  Identities=16%  Similarity=0.016  Sum_probs=30.6

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      ..++++.-.....|.+    +=+++|.++|++||+.+++|+.+.|+-
T Consensus       242 ~~~vv~~~~~t~~G~i----d~l~~I~~la~~~~~~lhvDaA~g~~~  284 (481)
T 4e1o_A          242 PVFVCATLGTTGVCAF----DCLSELGPICAREGLWLHIDAAYAGTA  284 (481)
T ss_dssp             EEEEEEEBSCTTTCCB----CCHHHHHHHHHHHTCEEEEECTTGGGG
T ss_pred             cEEEEEecCCCCCcCc----CCHHHHHHHHHHcCCeEEeehhhHHHH
Confidence            4444444433444544    238899999999999999999988753

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=94.81  E-value=0.16  Score=41.06  Aligned_cols=58  Identities=10%  Similarity=0.095  Sum_probs=39.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEccccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQVGF   87 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tGf   87 (114)
                      +.+++.+.++       .++.++++++..+.-.....+..-++++.++|++  +|+++|+||++.-+
T Consensus       165 e~l~~~l~~~-------~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~  224 (427)
T 3i16_A          165 EEIEKVLKED-------ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEF  224 (427)
T ss_dssp             HHHHHHHHTC-------TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTT
T ss_pred             HHHHHHhhCC-------CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence            3455566542       4788999998432111112234568999999999  99999999998644

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=94.46  E-value=0.064  Score=43.20  Aligned_cols=49  Identities=18%  Similarity=0.066  Sum_probs=33.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.+.+.        +..++++ .. ++.+ ...+   +++++++|+++|+++|.||++.
T Consensus       183 d~le~~i~~~--------~tklIi~-~~-sn~~-~~~d---l~~i~~ia~~~g~~livD~ah~  231 (483)
T 1rv3_A          183 DRLEENARLF--------HPKLIIA-GT-SCYS-RNLD---YGRLRKIADENGAYLMADMAHI  231 (483)
T ss_dssp             HHHHHHHHHH--------CCSEEEE-CC-SSCC-SCCC---HHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHHHhhc--------CCcEEEE-eC-CcCC-CcCC---HHHHHHHHHHcCCEEEEEccch
Confidence            4566666543        3456676 32 3333 3333   7899999999999999999976

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=94.40  E-value=0.14  Score=40.91  Aligned_cols=47  Identities=6%  Similarity=-0.045  Sum_probs=33.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHH--hCCeEEEcccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRA--AGGVCVADEVQVG   86 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~--~gillI~DEV~tG   86 (114)
                      .+..++++|...|.-.....+..-++++.++|++  +|+++|+||++.-
T Consensus       158 ~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~  206 (409)
T 3jzl_A          158 PKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGE  206 (409)
T ss_dssp             TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCT
T ss_pred             CCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCccc
Confidence            4788999998332111122233568999999999  9999999999753

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=94.13  E-value=0.27  Score=39.54  Aligned_cols=42  Identities=14%  Similarity=-0.008  Sum_probs=29.5

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ..++++.-.....|.+    +=+++|.++|++||+.+++|+.+.|.
T Consensus       235 ~~~v~~~~~~t~~G~~----~~l~~I~~la~~~~~~lhvD~A~~~~  276 (475)
T 3k40_A          235 PFYAVVTLGTTNSCAF----DYLDECGPVGNKHNLWIHVDAAYAGS  276 (475)
T ss_dssp             EEEEEEEBSCTTTCCB----CCHHHHHHHHHHTTCEEEEECTTGGG
T ss_pred             cEEEEEEecCCCCcCc----CCHHHHHHHHHHhCCeEEEeHHhHHH
Confidence            4444444333334544    23789999999999999999998764

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=93.64  E-value=0.27  Score=38.98  Aligned_cols=44  Identities=5%  Similarity=-0.228  Sum_probs=30.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .++.++++.......|.+    .-++++.++|+++|+++++||...++
T Consensus       230 ~~~~~vv~~~~nn~tG~i----~~l~~I~~la~~~g~~v~vD~A~~~~  273 (456)
T 2z67_A          230 GNRPCVLSTLTFFPPRNS----DDIVEIAKICENYDIPHIINGAYAIQ  273 (456)
T ss_dssp             TCCEEEEEESSCCTTBCC----CCHHHHHHHHHHHTCCEEEECTTTTT
T ss_pred             CCeEEEEEeCCCCCCCCc----CCHHHHHHHHHHcCCcEEEECcchHH
Confidence            355555444332234544    23689999999999999999987655

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=93.18  E-value=0.35  Score=38.36  Aligned_cols=27  Identities=19%  Similarity=0.009  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          62 NYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        62 ~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      +=+++|.++|++||+.+++|+++.|+-
T Consensus       252 ~~l~~I~~la~~~~~~lhvD~a~g~~~  278 (486)
T 1js3_A          252 DNLLEVGPICHEEDIWLHVDAAYAGSA  278 (486)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTGGGG
T ss_pred             CCHHHHHHHHHHcCCEEEEehhhHHHH
Confidence            448899999999999999999998753

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=93.09  E-value=0.33  Score=39.01  Aligned_cols=45  Identities=13%  Similarity=0.130  Sum_probs=35.4

Q ss_pred             EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccc
Q psy1628          45 FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGR   89 (114)
Q Consensus        45 viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgR   89 (114)
                      +++-+.+++---..++.+.++++.++|+++++++|.||+..||..
T Consensus       193 vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~  237 (420)
T 4h51_A          193 FILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYAS  237 (420)
T ss_dssp             EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred             EEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhcc
Confidence            344444444333678899999999999999999999999999954

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=92.99  E-value=0.19  Score=42.26  Aligned_cols=56  Identities=7%  Similarity=-0.121  Sum_probs=39.8

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      -+.+|+.++++  ++   +.+++++..|--- ++..   .+=++++.++|++||+.+++||-.=+
T Consensus       202 ~e~le~aI~e~--ga---~~i~~V~~Ttt~y-~p~~---~ddI~eIaeIch~~gIpllVDeAhGa  257 (501)
T 3hl2_A          202 LKAVEAKVQEL--GP---DCILCIHSTTSCF-APRV---PDRLEELAVICANYDIPHIVNNAYGV  257 (501)
T ss_dssp             HHHHHHHHHHH--CG---GGEEEEEEECSCC-TTBC---CCCHHHHHHHHHHHTCCEEEECTTCT
T ss_pred             HHHHHHHHHhc--CC---CcEEEEEecCCCC-CCcc---cccHHHHHHHHHHcCCeEEEeCcchh
Confidence            45677888876  34   7889988876321 1212   23488999999999999999985543

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=92.82  E-value=0.11  Score=38.43  Aligned_cols=46  Identities=17%  Similarity=0.199  Sum_probs=30.5

Q ss_pred             eEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          42 PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        42 iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      ..++++.-.+...|...+.+    +++++|+++++ +|+||++.+|+..+.
T Consensus       136 ~~~v~i~~p~nptG~~~~~~----~l~~l~~~~~~-~ivDea~~~~~~~~~  181 (337)
T 3p1t_A          136 DDCVVLANPSNPTGQALSAG----ELDQLRQRAGK-LLIDETYVDYSSFRA  181 (337)
T ss_dssp             TEEEEEESSCTTTCCCCCHH----HHHHHHHHCSE-EEEECTTGGGSSCSS
T ss_pred             CCEEEEeCCCCCCCCCCCHH----HHHHHHHhCCc-EEEECCChhhccccc
Confidence            34555555455556555543    57778899997 556999998865553

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=92.67  E-value=0.23  Score=40.89  Aligned_cols=57  Identities=9%  Similarity=-0.143  Sum_probs=40.8

Q ss_pred             HHHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          22 HLFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        22 ~~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      -+.+++.++++.  +   +.+++++..|--...|    ..+=++++.++|++||+.+++||-.-++
T Consensus       184 ~~~le~aI~~~~--~---~~~~~Vv~t~t~~g~g----~~ddl~~Ia~ia~~~gi~l~VD~A~G~~  240 (450)
T 3bc8_A          184 LKAVEAKIQELG--P---EHILCLHSTTACFAPR----VPDRLEELAVICANYDIPHVVNNAYGLQ  240 (450)
T ss_dssp             HHHHHHHHHHHC--G---GGEEEEEEESSCCTTB----CCCCHHHHHHHHHHHTCCEEEECTTTTT
T ss_pred             HHHHHHHHHhcC--C---CCEEEEEEECCcCCCc----eecCHHHHHHHHHHCCCeEEEECCCchh
Confidence            456777887762  2   5789999977433211    2244789999999999999999776554

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=89.98  E-value=0.6  Score=37.69  Aligned_cols=43  Identities=12%  Similarity=0.027  Sum_probs=31.1

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh------CCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA------GGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~------gillI~DEV~tGf   87 (114)
                      +..++++.-.....|.+.    -+++|.++|+++      |+++++|+.+.|+
T Consensus       202 ~t~~v~~~~~~n~tG~~~----~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~  250 (502)
T 3hbx_A          202 NTICVAAILGSTLNGEFE----DVKLLNDLLVEKNKETGWDTPIHVDAASGGF  250 (502)
T ss_dssp             TEEEEEEEBSCTTTCCBC----CHHHHHHHHHHHHHHHCCCCCEEEECTTGGG
T ss_pred             CCEEEEEecCCCCCCccc----CHHHHHHHHHHhhhccCCCCeEEEECCccch
Confidence            455565554333345443    378899999999      9999999999876

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=89.84  E-value=0.61  Score=36.57  Aligned_cols=43  Identities=9%  Similarity=0.001  Sum_probs=30.9

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh------CCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA------GGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~------gillI~DEV~tGf   87 (114)
                      +..++++.-.....|.+.    =+++|.++|+++      |+.+++||++.++
T Consensus       187 ~t~~v~~~~~~n~tG~~~----~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~  235 (452)
T 2dgk_A          187 NTIGVVPTFGVTYTGNYE----FPQPLHDALDKFQADTGIDIDMHIDAASGGF  235 (452)
T ss_dssp             TEEEEECBBSCTTTCBBC----CHHHHHHHHHHHHHHHCCCCCEEEECTTGGG
T ss_pred             CCEEEEEEcCCcCCcccC----CHHHHHHHHHHHhhccCCCCcEEEEcccHHH
Confidence            455555543333345553    278999999996      9999999999886

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=89.82  E-value=0.46  Score=41.00  Aligned_cols=38  Identities=13%  Similarity=0.098  Sum_probs=28.7

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      +.++..|.  ..|...+    ++++.++|++||+++++||++.+
T Consensus       315 lvil~~pn--~~G~v~d----l~~I~~ia~~~~~~livDeA~~~  352 (755)
T 2vyc_A          315 YCVVTNCT--YDGVCYN----AKEAQDLLEKTSDRLHFDEAWYG  352 (755)
T ss_dssp             CEEEESSC--TTSEEEC----HHHHHHHHTTTCSEEEEECTTCT
T ss_pred             EEEEECCC--CCceecC----HHHHHHHHHHcCCEEEEECcCch
Confidence            44555652  3465543    78999999999999999999975

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=87.78  E-value=0.38  Score=37.33  Aligned_cols=21  Identities=24%  Similarity=0.164  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhCCeEEEccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++++.++|+ ||+++|.|++|+
T Consensus       145 ~~~i~~la~-~~~~vi~D~a~a  165 (377)
T 3ju7_A          145 LEEYEELEK-KGVPVVVDAAPG  165 (377)
T ss_dssp             CHHHHHHHH-TTCCBEEECTTC
T ss_pred             HHHHHHHHh-cCCEEEEECCCc
Confidence            588999999 999999999997

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=86.56  E-value=1.3  Score=34.52  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEE--Eccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCV--ADEV   83 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI--~DEV   83 (114)
                      .++.++++.-. ...|.+.+    ++++.++|+++|+++|  +|+.
T Consensus       195 ~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~  235 (438)
T 1wyu_A          195 EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPL  235 (438)
T ss_dssp             TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTT
T ss_pred             CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechh
Confidence            46777777763 55566552    8899999999999999  5544

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=84.86  E-value=0.63  Score=38.23  Aligned_cols=22  Identities=9%  Similarity=0.090  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhCCeEEEccccc
Q psy1628          64 LREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        64 l~~lr~lc~~~gillI~DEV~t   85 (114)
                      +++++++|++||+++++|+++.
T Consensus       220 l~~i~~ia~~~g~~livD~Ah~  241 (490)
T 2a7v_A          220 YARMREVCDEVKAHLLADMAHI  241 (490)
T ss_dssp             HHHHHHHHHHTTCEEEEECGGG
T ss_pred             HHHHHHHHHHcCCEEEEccccc
Confidence            8999999999999999999975

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=84.83  E-value=2.1  Score=36.89  Aligned_cols=38  Identities=24%  Similarity=0.177  Sum_probs=28.2

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccc
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVG   86 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tG   86 (114)
                      +.++..|.  ..|.+.+    ++++.++|++||+++++||++.+
T Consensus       284 lviv~~pn--~~G~v~d----l~~I~~la~~~g~~livDeAh~~  321 (730)
T 1c4k_A          284 LAVIQLGT--YDGTIYN----AHEVVKRIGHLCDYIEFDSAWVG  321 (730)
T ss_dssp             EEEEESBC--TTSEEEC----HHHHHHHHGGGBSEEEEECTTCC
T ss_pred             EEEEECCC--CCCeecC----HHHHHHHHHHcCCeEEEEccccc
Confidence            34444563  2465543    78999999999999999999863

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=84.80  E-value=0.24  Score=36.86  Aligned_cols=40  Identities=10%  Similarity=-0.073  Sum_probs=29.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEcccccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFG   88 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfg   88 (114)
                      .++.++++.......|...+         +++++||+++|.||+++.+.
T Consensus       140 ~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~  179 (360)
T 1w23_A          140 ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILS  179 (360)
T ss_dssp             TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTS
T ss_pred             CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCC
Confidence            46788888876666676654         23338999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	7e-15
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-14
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	4e-14
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	2e-08
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	1e-07
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	2e-05
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	2e-05

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 66.7 bits (162), Expect = 7e-15
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A   E +Q  GG       +LR   +  +  G + + DE+Q G GR G  +     +  
Sbjct: 179 AAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAF---EHF 235

Query: 103 DIIPDIVT 110
            I+PDI+T
Sbjct: 236 GIVPDILT 243

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 66.0 bits (160), Expect = 1e-14
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
           CAF  E +Q   G I+P  NYL+ VY   +    + VADEVQ G GR         +   
Sbjct: 188 CAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRT---GKLLCVHHY 244

Query: 103 DIIPDIVTV 111
           ++ PD++ +
Sbjct: 245 NVKPDVILL 253

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (157), Expect = 4e-14
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            AF  E +Q   G ++P   YL  V +       + +ADE+Q G  R G          +
Sbjct: 190 AAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAV---DYE 246

Query: 103 DIIPDIVTV 111
           ++ PDIV +
Sbjct: 247 NVRPDIVLL 255

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
                E +    G I+P A +L  + +       + V DEV  GF     +    +  G
Sbjct: 201 AGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRI--AYGGVQEKFG 257

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 46.0 bits (108), Expect = 1e-07
 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD 102
            A   E +Q  GG       +++ +       G + +ADEVQ G GR     +A +  G 
Sbjct: 200 AAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRT-GTLFAMEQMG- 257

Query: 103 DIIPDIVTV 111
            + PD+ T 
Sbjct: 258 -VAPDLTTF 265

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 43  CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQ 98
                  +Q  GG  +    +L+ + K     G + +ADE+  GFGR G  +    
Sbjct: 207 AVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 39.7 bits (91), Expect = 2e-05
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 42  PCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQG 101
             AF AE + S GG I  P  Y+  + +   A G + + DE Q G GR GT +   +   
Sbjct: 202 LAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR--- 258

Query: 102 DDIIPDI 108
           D + PDI
Sbjct: 259 DGVTPDI 265

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.95
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.95
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.95
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.95
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.94
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.94
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.93
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.93
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.08
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	98.8
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	98.49
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	98.22
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	98.05
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	97.94
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	97.39
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	97.24
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	96.98
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	96.65
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	96.5
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	96.29
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	96.13
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	95.85
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	95.76
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	95.76
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	95.32
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	95.12
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	95.11
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	94.99
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	94.84
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	94.82
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	94.75
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	94.74
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	94.7
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	94.67
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	94.4
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	94.13
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	94.02
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	93.87
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	93.87
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	93.7
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	93.47
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	93.37
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	93.23
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	92.51
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	92.51
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	92.42
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	92.04
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	92.02
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	91.51
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	87.26
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	86.99
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	86.61
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	85.97
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	80.65

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=5e-29  Score=202.71  Aligned_cols=88  Identities=25%  Similarity=0.335  Sum_probs=76.3

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      ..+++++.....++   ++|||+|+||+||++|++++|++|++++|++|++||++||+|||||||||||+ ||++|++|.
T Consensus       233 ~~l~~~~~~~~~~~---~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~-~~~~e~~gi  308 (461)
T d1ohwa_         233 EEVEDLIVKYRKKK---KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGK-FWAHEHWGL  308 (461)
T ss_dssp             HHHHHHHHHHHHTT---CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSS-SSGGGGGCC
T ss_pred             HHHHHHHHHHHhCC---CccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccc-ccccccccc
Confidence            34555554322233   89999999999999999999999999999999999999999999999999998 999999993


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                      +..||++|+||+
T Consensus       309 ~~~PDiv~~gK~  320 (461)
T d1ohwa_         309 DDPADVMTFSKK  320 (461)
T ss_dssp             SSCCSEEEECGG
T ss_pred             ccCchhhhhhhc
Confidence            336999999996

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.3e-28  Score=196.10  Aligned_cols=72  Identities=29%  Similarity=0.432  Sum_probs=70.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++||+|+||+||++|+.+|+++|++++|++|++||++||+|||||||||||. +|+++++|  ++|||+|+||+
T Consensus       197 ~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~-~~a~~~~g--v~PDi~~~gK~  268 (425)
T d1sffa_         197 EDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGT-LFAMEQMG--VAPDLTTFAKS  268 (425)
T ss_dssp             GGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGTT--SCCSEEEECGG
T ss_pred             cceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcch-hhHHHhcC--CCccceecccc
Confidence            79999999999999999999999999999999999999999999999999998 99999999  99999999996

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-28  Score=195.12  Aligned_cols=80  Identities=30%  Similarity=0.494  Sum_probs=75.0

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDD  103 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~  103 (114)
                      .+++.+++        +++||+|+||+||++|+++++++|++++|++|++||++||+|||||||||||+ +|+++++|  
T Consensus       179 ~l~~~l~~--------~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~a~~~~g--  247 (404)
T d2byla1         179 ALERALQD--------PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGR-WLAVDYEN--  247 (404)
T ss_dssp             HHHHHHTS--------TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT--
T ss_pred             HHHHhcCC--------CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccc-cchhhhcC--
Confidence            56666643        69999999999999999999999999999999999999999999999999999 99999999  


Q ss_pred             CCcCEEEeecC
Q psy1628         104 IIPDIVTVVWN  114 (114)
Q Consensus       104 v~PDivt~gK~  114 (114)
                      ++|||+|+||+
T Consensus       248 v~PDi~~~gK~  258 (404)
T d2byla1         248 VRPDIVLLGKA  258 (404)
T ss_dssp             CCCSEEEECGG
T ss_pred             CCCCEEEECch
Confidence            99999999996

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.95  E-value=3.5e-28  Score=195.05  Aligned_cols=72  Identities=38%  Similarity=0.568  Sum_probs=70.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++|||+|+||+||++|+++||++|++++|++|++||++||+|||||||||||+ +|+++++|  ++|||+|+||+
T Consensus       200 ~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~-~~~~~~~g--v~PDi~~~gK~  271 (431)
T d1zoda1         200 GNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT-MFACQRDG--VTPDILTLSKT  271 (431)
T ss_dssp             SCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT--CCCSEEEECHH
T ss_pred             ccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEecccccccccccc-ccccccCC--CCcchhccccc
Confidence            89999999999999999999999999999999999999999999999999998 99999999  99999999995

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.94  E-value=6.2e-28  Score=192.69  Aligned_cols=72  Identities=35%  Similarity=0.578  Sum_probs=70.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      ++|||||+||++|++|+++|+++|+++||++|++||++||+|||||||||||. +|++|++|  ++|||+|+||+
T Consensus       185 ~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~-~~~~e~~g--v~PDivt~gK~  256 (404)
T d1z7da1         185 PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK-LLCVHHYN--VKPDVILLGKA  256 (404)
T ss_dssp             TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS-SSGGGGGT--CCCSEEEECGG
T ss_pred             CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc-cccccccC--CCCCEEEEccc
Confidence            79999999999999999999999999999999999999999999999999998 99999999  99999999996

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=3.2e-27  Score=188.28  Aligned_cols=72  Identities=32%  Similarity=0.530  Sum_probs=70.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK~  114 (114)
                      +++||||+||+||++|+.+++++|++++|++|++||++||+|||+|||||||+ +|++++++  ++||++|+||+
T Consensus       176 ~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~-~~~~~~~~--v~PDi~~~gK~  247 (387)
T d1vefa1         176 EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK-RFAFEHFG--IVPDILTLAKA  247 (387)
T ss_dssp             TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSTHHHHT--CCCSEEEECGG
T ss_pred             CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC-CcccccCC--cCCceeeeccc
Confidence            79999999999999999999999999999999999999999999999999998 99999999  99999999996

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.7e-27  Score=188.42  Aligned_cols=82  Identities=27%  Similarity=0.421  Sum_probs=75.3

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccC-CCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQ-SCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~-g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      .+++.+.++.      ++|||+|+||++ ++||+.+||++|++++|++|++||++||+|||||||||||+ +|++++++ 
T Consensus       193 ~~~~~~~~~~------~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~-~~~~~~~~-  264 (429)
T d1s0aa_         193 GFARLMAAHR------HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK-LFACEHAE-  264 (429)
T ss_dssp             HHHHHHHHHT------TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-SSGGGGGT-
T ss_pred             hhhhhhhhcC------CccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcccccccccc-ccccccce-
Confidence            4556666653      899999999996 67889999999999999999999999999999999999998 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       265 -v~PDi~~~gK~  275 (429)
T d1s0aa_         265 -IAPDILCLGKA  275 (429)
T ss_dssp             -CCCSEEEECGG
T ss_pred             -ecccccccccc
Confidence             99999999995

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.93  E-value=9.8e-27  Score=187.08  Aligned_cols=82  Identities=22%  Similarity=0.260  Sum_probs=76.8

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+|++++++.      +++||+|+||++|++|+++||++|++++|++|++||++||+||||||| |+|+ +|+++++| 
T Consensus       187 ~~le~~~~~~~------~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~-r~g~-~~~~~~~g-  257 (427)
T d2gsaa_         187 EAVKALFAENP------GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF-RIAY-GGVQEKFG-  257 (427)
T ss_dssp             HHHHHHHTTST------TTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT-TTBT-TCHHHHTT-
T ss_pred             HHHHHHHHhCC------CCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc-eecc-cchHHhcC-
Confidence            45788887753      899999999999999999999999999999999999999999999999 7898 99999999 


Q ss_pred             CCCcCEEEeecC
Q psy1628         103 DIIPDIVTVVWN  114 (114)
Q Consensus       103 ~v~PDivt~gK~  114 (114)
                       ++|||+|+||+
T Consensus       258 -i~PDi~~~gK~  268 (427)
T d2gsaa_         258 -VTPDLTTLGKI  268 (427)
T ss_dssp             -CCCSEEEECGG
T ss_pred             -CCHHHHhhhhc
Confidence             99999999995

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.08  E-value=4.5e-11  Score=94.05  Aligned_cols=84  Identities=15%  Similarity=0.116  Sum_probs=67.1

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc------cccccCccchh
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV------GFGRVGTHWWA   96 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t------GfgRtG~~~~~   96 (114)
                      +.+++.++++.  +   +.++++++||.++++|..+++.+++++++++|++||+++|+||+++      +.+|++. +|+
T Consensus       169 ~~l~~~i~~~~--~---~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~~-~~~  242 (465)
T d1ax4a_         169 KKLKENIAQHG--A---DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK-YKN  242 (465)
T ss_dssp             HHHHHHHHHHC--G---GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGG-GTT
T ss_pred             HHHHHHHHhhc--c---ccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhccccccccc-ccc
Confidence            46777777752  3   6899999999999999999999999999999999999999999998      4556665 666


Q ss_pred             hhhcCCCCC------cCEEEeecC
Q psy1628          97 FQLQGDDII------PDIVTVVWN  114 (114)
Q Consensus        97 ~~~~g~~v~------PDivt~gK~  114 (114)
                      .+...  +.      .|+++++|+
T Consensus       243 ~~~~~--i~~~~~~~~d~~s~s~~  264 (465)
T d1ax4a_         243 ATIKE--VIFDMYKYADALTMSAK  264 (465)
T ss_dssp             CCHHH--HHHHHGGGCSEEEEETT
T ss_pred             cchhh--hccccccccceeEeecc
Confidence            55443  33      467777763

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.7e-09  Score=85.25  Aligned_cols=58  Identities=16%  Similarity=0.028  Sum_probs=51.9

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+|+.++++  ++   ..++++++|+.++.+|..+++.+++++++++|++||++||+||++.
T Consensus       170 ~~l~~~i~~~--~~---~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~  227 (467)
T d2v1pa1         170 EGLERGIEEV--GP---NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARF  227 (467)
T ss_dssp             HHHHHHHHHH--CG---GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTH
T ss_pred             HHHHHHHhhc--Cc---cccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence            4677888776  24   6899999999999999999999999999999999999999999986

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=1.5e-07  Score=73.77  Aligned_cols=69  Identities=16%  Similarity=0.072  Sum_probs=50.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc--cccCccchhhhhcCCCCCcCEE--EeecC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF--GRVGTHWWAFQLQGDDIIPDIV--TVVWN  114 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf--gRtG~~~~~~~~~g~~v~PDiv--t~gK~  114 (114)
                      .+...+++|++.+..|...    ++++++++|++||+++|+||+++++  |.+|.  ...++++.--.+|++  |++|+
T Consensus       176 ~~~~liv~egv~s~~G~~~----~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~--G~~~~~~~~~~~dii~~tl~Ka  248 (401)
T d1fc4a_         176 ARHVLIATDGVFSMDGVIA----NLKGVCDLADKYDALVMVDDSHAVGFVGENGR--GSHEYCDVMGRVDIITGTLGKA  248 (401)
T ss_dssp             CSSEEEEEESEETTTTEEC----CHHHHHHHHHHTTEEEEEECTTTTTTSSTTSC--CHHHHTTCTTCCSEEEEESSST
T ss_pred             cCceEEEEcCCCCCCCchh----hhhHHHHHHhhcCcEEEehhhhccccccCCCC--ccchhccCCCCCeEEEeecccc
Confidence            5668899999987655443    4999999999999999999999975  33443  345566621256766  67775

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=3e-06  Score=65.61  Aligned_cols=75  Identities=21%  Similarity=0.278  Sum_probs=57.0

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc--cccCccchhhhhc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF--GRVGTHWWAFQLQ  100 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf--gRtG~~~~~~~~~  100 (114)
                      ..+|+.+.++.      .+-..+++|.+.+..|-+.|    ++++.++|++||+++|+||.++..  |.+|.  ...+++
T Consensus       155 ~~le~~l~~~~------~~~~~vv~e~v~s~~G~i~p----l~~l~~l~~~~~~~livDeah~~gv~G~~g~--G~~~~~  222 (383)
T d1bs0a_         155 THLARLLASPC------PGQQMVVTEGVFSMDGDSAP----LAEIQQVTQQHNGWLMVDDAHGTGVIGEQGR--GSCWLQ  222 (383)
T ss_dssp             HHHHHHHHSCC------SSCEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTTTSSGGGC--CHHHHT
T ss_pred             HHHHHHhcccC------CCceEEEecCCCCCCCcccc----hhHHHHHHHhcCcEEEeecceeeeecCCccc--chHHHc
Confidence            45777777652      45678999999886665554    677889999999999999999865  55654  345788


Q ss_pred             CCCCCcCEEEe
Q psy1628         101 GDDIIPDIVTV  111 (114)
Q Consensus       101 g~~v~PDivt~  111 (114)
                      +  +.+|+++.
T Consensus       223 ~--~~~~~~~~  231 (383)
T d1bs0a_         223 K--VKPELLVV  231 (383)
T ss_dssp             T--CCCSEEEE
T ss_pred             C--Cccccccc
Confidence            8  88888774

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=98.05  E-value=2.7e-06  Score=60.48  Aligned_cols=73  Identities=7%  Similarity=-0.194  Sum_probs=56.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK  113 (114)
                      ....+.++++.+.+.+....+.+.++++.++|++||++++.||+++++.+++. .+..........++.++++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  205 (345)
T d1v72a1         133 HTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSL-GCSPAEMTWKAGVDALSFGA  205 (345)
T ss_dssp             TSCEEEEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHH-TCCTTTTTGGGTCCEEEECC
T ss_pred             ccccceeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceecccc-ccCHHHhhccccccccccCc
Confidence            46778888888888788888999999999999999999999999999877775 44444433113445666654

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=5.1e-06  Score=59.30  Aligned_cols=71  Identities=11%  Similarity=0.061  Sum_probs=54.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEeec
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVVW  113 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~gK  113 (114)
                      .++..+++++.+.+.|....+.+.++.++++|+++|++++.||+++++..+.. .+......  ...+..+++|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~-~~~~~~~~--~~~~~~~~~~  197 (343)
T d1m6sa_         127 PRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIAS-GVPVKEYA--GYADSVMFCL  197 (343)
T ss_dssp             CCEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHH-CCCHHHHH--HTCSEEEEES
T ss_pred             ccccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEecccccccccccc-ccchhhhc--cccccccccc
Confidence            57788888988888888888999999999999999999999999998866554 33333332  3345555544

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.39  E-value=0.00044  Score=50.48  Aligned_cols=74  Identities=9%  Similarity=0.044  Sum_probs=49.4

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCC
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGD  102 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~  102 (114)
                      +.+++.+++.. ..   .++..++++-..+..|...+    ++++.++|++||+++|+||+++ +|..+.   ....++ 
T Consensus       126 ~~l~~~i~~~~-k~---~~~~lv~i~~~~n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~~---~~~~~g-  192 (364)
T d2e7ja1         126 ENFAQTIEETK-KR---GEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMPV---SLKEIG-  192 (364)
T ss_dssp             HHHHHHHHHHT-TT---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBCC---CHHHHT-
T ss_pred             HHHHhhhhhhc-cc---CCceEEEeecCCCCCceeec----chhheeccccccchhhccccch-hhhhhh---cccccc-
Confidence            45666666542 12   46777877766665665544    7899999999999999999995 444332   122233 


Q ss_pred             CCCcCEEEee
Q psy1628         103 DIIPDIVTVV  112 (114)
Q Consensus       103 ~v~PDivt~g  112 (114)
                         .|+++++
T Consensus       193 ---~D~~~~S  199 (364)
T d2e7ja1         193 ---ADFIVGS  199 (364)
T ss_dssp             ---CSEEEEE
T ss_pred             ---cceeeec
Confidence               5777765

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=97.24  E-value=0.00033  Score=55.16  Aligned_cols=58  Identities=9%  Similarity=-0.044  Sum_probs=49.6

Q ss_pred             HHHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          23 LFFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        23 ~~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +.+++.+.++.  +   ..++.+++|-....+|-.+.+.+.+++++++|++||+.++.|+.+.
T Consensus       161 ~~le~~I~~~~--~---~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~  218 (456)
T d1c7ga_         161 NKLATLIKEKG--A---ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRC  218 (456)
T ss_dssp             HHHHHHHHHHC--G---GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             HHHHHHhhhcC--C---ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchh
Confidence            34666776652  3   6889999998888888899999999999999999999999999986

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.98  E-value=0.0019  Score=50.22  Aligned_cols=79  Identities=23%  Similarity=0.273  Sum_probs=53.1

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc---cccCccchhhhhc
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF---GRVGTHWWAFQLQ  100 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf---gRtG~~~~~~~~~  100 (114)
                      .++++++...  +   .+--.+++|-+-+-.|-+.|    ++++.++|++||+.+++||... |   |.+|+ . ..+++
T Consensus       165 ~l~~l~~~~~--~---~~~~~iv~egvySmdGd~ap----l~~l~~L~~~y~~~L~vDeAHs-~Gv~G~~G~-G-~~~~~  232 (396)
T d2bwna1         165 HLRELIAADD--P---AAPKLIAFESVYSMDGDFGP----IKEICDIAEEFGALTYIDEVHA-VGMYGPRGA-G-VAERD  232 (396)
T ss_dssp             HHHHHHHHSC--T---TSCEEEEEESBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-TTTSSTTSC-C-HHHHH
T ss_pred             HhhhHHhhhc--c---cCceeEEEEeeccCcccccc----cHhHHHHhhhhcceeeecccee-eeeeccccc-c-chhhc
Confidence            3556666542  2   34457888998776565555    6788999999999999999986 5   45665 2 34556


Q ss_pred             CCCCCcCEE--EeecC
Q psy1628         101 GDDIIPDIV--TVVWN  114 (114)
Q Consensus       101 g~~v~PDiv--t~gK~  114 (114)
                      +..-..|++  ++||+
T Consensus       233 ~~~~~~di~~gTlsKa  248 (396)
T d2bwna1         233 GLMHRIDIFNGTLAKA  248 (396)
T ss_dssp             TCGGGCSEEEEESSST
T ss_pred             CCceeeeeeeeccccc
Confidence            621244777  66774

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0055  Score=45.03  Aligned_cols=51  Identities=12%  Similarity=0.008  Sum_probs=38.3

Q ss_pred             CceEEEEEcccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++-. +.+ .| ...+.+.++++.++|+++|+++|.||+...|-..+.
T Consensus       132 ~~~~~i~l~~-p~NPTG-~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~  183 (361)
T d1d2fa_         132 PECKIMLLCS-PQNPTG-KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQ  183 (361)
T ss_dssp             TTEEEEEEES-SCTTTC-CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSS
T ss_pred             CCceeEEecc-cccccc-cccchhhhhhhhhhhhhhheeeeecccccccccccc
Confidence            4676666643 444 34 566777899999999999999999999998844443

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.50  E-value=0.003  Score=47.84  Aligned_cols=56  Identities=5%  Similarity=-0.251  Sum_probs=39.5

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .+++.++++. ..   ++++++++.......|...+    ++++.++|++||+.+++|+.+.++
T Consensus       198 ~l~~~i~~~~-~~---~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~  253 (434)
T d2z67a1         198 DIENAIKKEI-EL---GNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQ  253 (434)
T ss_dssp             HHHHHHHHHH-HT---TCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTT
T ss_pred             HHHHHHHhhh-hc---CCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhh
Confidence            4555665542 12   57778887765544554433    889999999999999999998654

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0045  Score=46.81  Aligned_cols=55  Identities=9%  Similarity=-0.170  Sum_probs=41.6

Q ss_pred             HHHHHHHhcCCCCCCCCceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          24 FFERIFLSASLYPFLFLYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        24 ~~e~~~~~~~~~~~~~~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      .+++.+++..  .   .+++++++.......|...+    ++++.++|++||++++.|+.+.++
T Consensus       182 ~l~~~i~~~~--~---~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~  236 (445)
T d3bc8a1         182 AVEAKIQELG--P---EHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQ  236 (445)
T ss_dssp             HHHHHHHHHC--G---GGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTT
T ss_pred             HHHHHHHhcc--c---cCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhh
Confidence            4666666642  2   57888888876655565543    889999999999999999998754

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.014  Score=43.08  Aligned_cols=52  Identities=13%  Similarity=0.016  Sum_probs=39.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++ +-+.+---...+.+.+++|.++|++|++++|.||+...+...+.
T Consensus       158 ~~~~~~~l-~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~  209 (389)
T d2gb3a1         158 ERTKGIVL-SNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGE  209 (389)
T ss_dssp             TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred             cCccEEEe-CCCCccccccchHHHHHHHHhhcccCCEEEEEeccccccccccc
Confidence            45666666 33444222455889999999999999999999999998866665

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.85  E-value=0.03  Score=41.14  Aligned_cols=35  Identities=20%  Similarity=0.147  Sum_probs=30.2

Q ss_pred             ccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ...+++-++++.++|++|++++|.||+...|...+
T Consensus       174 ~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~  208 (388)
T d1gdea_         174 AVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDD  208 (388)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTT
T ss_pred             CcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhcc
Confidence            56778999999999999999999999998774433

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=95.76  E-value=0.023  Score=42.05  Aligned_cols=50  Identities=16%  Similarity=0.101  Sum_probs=38.4

Q ss_pred             CceEEEEE-cccCCC-CCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFA-ESLQSC-GGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAvii-EPv~g~-gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .+..++++ -|  .+ .| ...+.+-++++.++|++|++.+|.||+...+...+.
T Consensus       163 ~~~~~i~~~~P--~NPTG-~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~  214 (382)
T d1b5pa_         163 PRTKALVVNSP--NNPTG-AVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGE  214 (382)
T ss_dssp             TTEEEEEEESS--CTTTC-CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC
T ss_pred             CCCeEEEECCC--CCCcc-hhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCC
Confidence            45555554 44  43 34 567889999999999999999999999998865565

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=95.76  E-value=0.063  Score=39.64  Aligned_cols=52  Identities=8%  Similarity=-0.026  Sum_probs=38.7

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      +...+++-|-+++-.-...+.+-++++.++|++|++++|.||+...|...|.
T Consensus       170 ~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~  221 (403)
T d1wsta1         170 RVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGE  221 (403)
T ss_dssp             CCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSC
T ss_pred             cccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCC
Confidence            4444555555554333577778899999999999999999999988755554

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=95.32  E-value=0.026  Score=42.25  Aligned_cols=51  Identities=8%  Similarity=0.008  Sum_probs=38.8

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .+...+++ +-+++---...+.+-++++.++|++|++++|.||+...+...+
T Consensus       182 ~~~~~il~-~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~  232 (412)
T d1ajsa_         182 EFSIFVLH-ACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGN  232 (412)
T ss_dssp             TTCEEEEE-SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSC
T ss_pred             CCcEEEEe-cCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCC
Confidence            34444555 4444433367888999999999999999999999999986554

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.12  E-value=0.022  Score=42.42  Aligned_cols=43  Identities=7%  Similarity=0.082  Sum_probs=32.4

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      ++..+++++......   ..+..=++++.++|++||+++|.||+..
T Consensus       132 ~~tk~i~~~~p~n~~---~~~~~~l~~i~~ia~~~~~~~i~De~y~  174 (366)
T d2aeua1         132 KDTLVIITGSTMDLK---VIELENFKKVINTAKNKEAIVFVDDASG  174 (366)
T ss_dssp             TTEEEEEECBCTTSC---BCCHHHHHHHHHHHHHHTCCEEEECTTH
T ss_pred             CCceEEEEEecCCCC---cCCHHHHHHHHHHhccCcEEEEEecCcc
Confidence            678888887433221   2344558999999999999999999975

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.11  E-value=0.027  Score=41.68  Aligned_cols=48  Identities=13%  Similarity=0.045  Sum_probs=37.6

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .+++=|-.++-.-...+.+.++++.++|++|++++|.||+..+|...+
T Consensus       171 ~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~  218 (394)
T d2ay1a_         171 MVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGL  218 (394)
T ss_dssp             EEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCH
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccc
Confidence            344445555543367888999999999999999999999999996554

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=94.99  E-value=0.042  Score=40.48  Aligned_cols=42  Identities=14%  Similarity=0.032  Sum_probs=35.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      +++..+++.-.....|...+    ++++.++|+++|+++++|..++
T Consensus       142 ~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~  183 (391)
T d1p3wa_         142 DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS  183 (391)
T ss_dssp             TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT
T ss_pred             CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc
Confidence            68888888877776777666    5689999999999999999986

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=94.84  E-value=0.11  Score=38.52  Aligned_cols=53  Identities=8%  Similarity=-0.074  Sum_probs=41.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++..+++-|-+.+-.-...+.+.++++.++|++|++++|.||+...|...+.
T Consensus       181 ~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~  233 (420)
T d1vp4a_         181 KQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGE  233 (420)
T ss_dssp             GGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSC
T ss_pred             cccceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCc
Confidence            45666666666555444668889999999999999999999999988754443

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=94.82  E-value=0.074  Score=38.62  Aligned_cols=52  Identities=15%  Similarity=0.153  Sum_probs=39.0

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .++.++++..-++-.| ...+.+.++++.++|++|++++|.||+...|...+.
T Consensus       143 ~~~~~v~l~nP~NPtG-~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~  194 (355)
T d1lc5a_         143 PDLDCLFLCTPNNPTG-LLPERPLLQAIADRCKSLNINLILDEAFIDFIPHET  194 (355)
T ss_dssp             TTCCEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCC
T ss_pred             cccceeeeecccCccc-ccchhhhhhhhhhhccccccccccccceeeeeeecc
Confidence            3555555544333344 366889999999999999999999999998865554

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=94.75  E-value=0.053  Score=40.36  Aligned_cols=51  Identities=12%  Similarity=0.062  Sum_probs=38.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .+..++++ +-++|---...+.+-++++.++|++|++++|.||+...+...+
T Consensus       174 ~~~~~iii-~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~  224 (401)
T d7aata_         174 EKSIILLH-ACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGD  224 (401)
T ss_dssp             TTCEEEEE-SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSC
T ss_pred             CceEEEEe-cCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCC
Confidence            34455555 4444432367888999999999999999999999999996544

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.036  Score=41.19  Aligned_cols=50  Identities=14%  Similarity=-0.009  Sum_probs=37.4

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +... ++=+-+++-.-...+.+.++++.++|++|++++|.||+..+|...+
T Consensus       172 ~~~~-i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~  221 (396)
T d2q7wa1         172 GDVV-LFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGL  221 (396)
T ss_dssp             TCEE-EEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCH
T ss_pred             CcEE-EEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCC
Confidence            4443 4444444433367888999999999999999999999999995443

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=94.70  E-value=0.06  Score=39.23  Aligned_cols=35  Identities=17%  Similarity=0.074  Sum_probs=29.4

Q ss_pred             ccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          57 IIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        57 ~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ...+.+-++++.++|++||+.+|.||+...+....
T Consensus       167 ~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~  201 (368)
T d1v2da_         167 LVFGERELEAIARLARAHDLFLISDEVYDELYYGE  201 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS
T ss_pred             ccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccc
Confidence            66777889999999999999999999987654433

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=94.67  E-value=0.086  Score=39.65  Aligned_cols=51  Identities=12%  Similarity=-0.022  Sum_probs=36.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++-.-..-.| ...+.+-++++.++|++||+.+|.||+...+-..+
T Consensus       187 ~~~~~~~l~nP~NPtG-~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~  237 (428)
T d1iaya_         187 IKVKGLILTNPSNPLG-TTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDT  237 (428)
T ss_dssp             CCEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSS
T ss_pred             CCceEEEEccCCCccc-ccccccccchhheeeccCcEEEEecccccccccCc
Confidence            4666655543222233 56777889999999999999999999998774433

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.40  E-value=0.13  Score=38.16  Aligned_cols=49  Identities=12%  Similarity=-0.012  Sum_probs=35.4

Q ss_pred             ceEE-EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          41 YPCA-FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        41 ~iAA-viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +..+ ++.-|  ++---...+.+-++++.++|++|++++|.||+...+-..+
T Consensus       166 ~~~~v~l~~P--~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~  215 (395)
T d1xi9a_         166 RTKAIAVINP--NNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEG  215 (395)
T ss_dssp             TEEEEEEESS--CTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSS
T ss_pred             cccEEEecCC--CCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccc
Confidence            4444 44444  3322256788889999999999999999999998764433

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.083  Score=39.55  Aligned_cols=52  Identities=17%  Similarity=0.033  Sum_probs=38.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .+..++++ |-+.+-.-...+++.++++.++|+++++.+|.||+...|...+.
T Consensus       170 ~~~~~i~~-~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~  221 (418)
T d1w7la_         170 SRTKALVL-NTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGH  221 (418)
T ss_dssp             TTEEEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTC
T ss_pred             ccccceec-cCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCC
Confidence            34444443 55554434677888999999999999999999999998865553

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=94.02  E-value=0.073  Score=39.46  Aligned_cols=51  Identities=12%  Similarity=-0.020  Sum_probs=37.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++ +-+++---...+.+-++++.++|++|++++|.||+...|-..+
T Consensus       163 ~~~~~i~l-~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~  213 (394)
T d1c7na_         163 KNNKALLF-CSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPG  213 (394)
T ss_dssp             TTEEEEEE-ESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTT
T ss_pred             ccceEEEe-cccccccceeccHHHhhhhhccccccceeEeccccccccccCC
Confidence            35655555 3344432357788899999999999999999999998774333

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=93.87  E-value=0.074  Score=39.49  Aligned_cols=47  Identities=15%  Similarity=0.088  Sum_probs=35.4

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      +-++.-|  ++-.-...+.+-++++.++|+++|+.+|.||+...+...+
T Consensus       166 ~~~~~~P--~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~  212 (388)
T d1j32a_         166 LLVFNTP--SNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDD  212 (388)
T ss_dssp             EEEEESS--CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             EEEECCC--CCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccC
Confidence            4455556  3332356788999999999999999999999987664444

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=93.87  E-value=0.091  Score=39.39  Aligned_cols=51  Identities=10%  Similarity=0.135  Sum_probs=37.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ....++++-+-+.-.| ...+++.++++.++|+++++++|.||+..+|...+
T Consensus       175 ~~~~~i~i~~P~NPTG-~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~  225 (412)
T d1yaaa_         175 EGSIFVLHSCAHNPTG-LDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGD  225 (412)
T ss_dssp             TTCEEEEECSSCTTTC-CCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSC
T ss_pred             CceEEEEecCCCCCcc-ccCCHHHHHHHHhhhccCCEEEeecceeeecccCC
Confidence            3444455433333234 67788999999999999999999999999996544

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=93.70  E-value=0.12  Score=38.55  Aligned_cols=51  Identities=16%  Similarity=0.022  Sum_probs=37.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .+..++++-+-+.-.| ...+++-++++.++|++|++++|.||+..-+...+
T Consensus       170 ~~~~~~~i~~p~NPtG-~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~  220 (418)
T d2r5ea1         170 EKTKMIIINTPHNPLG-KVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEP  220 (418)
T ss_dssp             TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT
T ss_pred             ccccceecCCcCcccc-ccccHHHHHHHhhhhhcCCeeeecccchhhhccCC
Confidence            4666666643332234 46688899999999999999999999998774333

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=93.47  E-value=0.2  Score=37.53  Aligned_cols=51  Identities=18%  Similarity=0.086  Sum_probs=36.9

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .++.++++-.-+.-.| ...+.+-++++.++|++||+.+|.||+...+-..+
T Consensus       188 ~~~~~i~~~nP~NPtG-~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~  238 (431)
T d1m7ya_         188 LRVKGVLVTNPSNPLG-TTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSS  238 (431)
T ss_dssp             CCEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS
T ss_pred             CcceEEEecCcccccc-ccccccccccccccccccCcceeecccccccccCC
Confidence            4566655532222223 56788999999999999999999999998774433

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.37  E-value=0.16  Score=37.53  Aligned_cols=52  Identities=10%  Similarity=0.004  Sum_probs=37.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGT   92 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~   92 (114)
                      .+..++++-.-+.-.| ...+.+.++++.++|++|++++|.||+...|...|.
T Consensus       173 ~~~~~~~l~np~NPtG-~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~  224 (412)
T d1bw0a_         173 DKTKLLIVTNPSNPCG-SNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGK  224 (412)
T ss_dssp             TTEEEEEEESSCTTTC-CCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSS
T ss_pred             cccccccccccccccc-ccchhhhccccccccccCCeeeechhhHHHhccCCC
Confidence            3444444432222233 455789999999999999999999999998865554

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=93.23  E-value=0.34  Score=35.08  Aligned_cols=47  Identities=9%  Similarity=0.112  Sum_probs=34.0

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      .-++.-|  .+-.-...+.+.++++.++|++|++.+|.||+..-+...+
T Consensus       164 ~~~l~nP--~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~  210 (375)
T d1o4sa_         164 AVLINSP--NNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD  210 (375)
T ss_dssp             EEEEESS--CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS
T ss_pred             EEEEeCC--CCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccc
Confidence            3444444  4432245678999999999999999999999887664433

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.23  Score=36.92  Aligned_cols=61  Identities=16%  Similarity=0.058  Sum_probs=44.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      +++..+.+.-+...-|.+.|-    +++.++|+++|+++++|=+|+    .|.-....+.    ..+|+++++
T Consensus       162 ~~t~lv~~~~v~~~tG~~~pi----~~i~~~~~~~g~~~~vD~~q~----~g~~~id~~~----~~~D~~~~s  222 (405)
T d1jf9a_         162 EKTRLLAITHVSNVLGTENPL----AEMITLAHQHGAKVLVDGAQA----VMHHPVDVQA----LDCDFYVFS  222 (405)
T ss_dssp             TTEEEEEEESBCTTTCCBCCH----HHHHHHHHHTTCEEEEECTTT----TTTSCCCHHH----HTCSEEEEE
T ss_pred             CCcEEEEEecCCCcccccCch----HHhhhHHHHcCCeeeccccee----ccccccchhh----cCCceeecc
Confidence            688888888888877877764    467889999999999999987    3321122333    347888764

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.066  Score=39.77  Aligned_cols=49  Identities=12%  Similarity=-0.016  Sum_probs=37.7

Q ss_pred             EEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccC
Q psy1628          43 CAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVG   91 (114)
Q Consensus        43 AAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG   91 (114)
                      ..+++=|-+++---...+.+-++++.++|++|++++|.||+..++...+
T Consensus       174 ~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~  222 (397)
T d3tata_         174 SIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGM  222 (397)
T ss_dssp             CCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCH
T ss_pred             cEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCC
Confidence            3345555555533367888999999999999999999999999985433

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=92.42  E-value=0.11  Score=39.28  Aligned_cols=39  Identities=23%  Similarity=0.247  Sum_probs=28.2

Q ss_pred             EEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          45 FFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        45 viiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      +++....+..|...+    ++++.++|++||+.+++||.+..-
T Consensus       177 v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A~~~~  215 (462)
T d1c4ka2         177 LAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFDSAWVGY  215 (462)
T ss_dssp             EEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEECTTCCG
T ss_pred             eEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEechhhcc
Confidence            333344444465444    678999999999999999998754

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=92.04  E-value=0.29  Score=35.39  Aligned_cols=42  Identities=21%  Similarity=0.182  Sum_probs=34.3

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHh----CCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAA----GGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~----gillI~DEV~t   85 (114)
                      .++..+++.......|...+    ++++.++|+++    ++++++|.+++
T Consensus       144 ~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~vD~~~~  189 (381)
T d1elua_         144 PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVLVDGAQS  189 (381)
T ss_dssp             TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEEEECTTT
T ss_pred             ccccccccccccccccccch----hhHHHHHHhhcccccccccccccccc
Confidence            68889999988877777766    46788999984    69999999886

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.02  E-value=0.31  Score=34.72  Aligned_cols=61  Identities=15%  Similarity=0.163  Sum_probs=41.2

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++..+.+--...+.|...+    ++++.++|+++|+++++|=+|+ +|..-   +-.+.    ...|+++++
T Consensus       126 ~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~qs-~G~~~---~d~~~----~~~D~~~~s  186 (361)
T d1m32a_         126 PTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSS-FGGIP---MDIAA----LHIDYLISS  186 (361)
T ss_dssp             TTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTT-TTTSC---CCTTT----TTCSEEEEE
T ss_pred             cCccceEEEeeecccccchh----hhhhhhhhcccceeeEeecccc-cCccc---ccccc----cccceEEee
Confidence            45666666666666676665    5788899999999999999998 32221   12222    346887776

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=91.51  E-value=0.36  Score=35.84  Aligned_cols=61  Identities=16%  Similarity=0.073  Sum_probs=44.7

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .++..+.+--+....|...|    ++++.++|+++|+++++|=+|+ +|..-   .-...+    .+|+++++
T Consensus       162 ~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g~~~---id~~~~----~~D~~~~s  222 (408)
T d1t3ia_         162 EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-APHYP---LDVQLI----DCDWLVAS  222 (408)
T ss_dssp             TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TTTSC---CCHHHH----TCSEEEEE
T ss_pred             CCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-ccccc---cccccc----CCceEEec
Confidence            68888888888888887777    4678899999999999998886 33221   223333    36888765

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=87.26  E-value=0.66  Score=33.48  Aligned_cols=42  Identities=7%  Similarity=0.088  Sum_probs=36.6

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++..+.+--+...-|.+.|    ++++.++|+++|+++++|=+|+
T Consensus       163 ~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~  204 (404)
T d1qz9a_         163 QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS  204 (404)
T ss_dssp             TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT
T ss_pred             CCceEEEEecccccccceec----HHHHhccccccccceeEEeecc
Confidence            68888888888888887775    6788999999999999999987

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.99  E-value=0.39  Score=34.69  Aligned_cols=38  Identities=18%  Similarity=0.184  Sum_probs=27.1

Q ss_pred             EEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          44 AFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        44 AviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .+.+--...+.|.+.|    ++++.++|+++|+++++|.+|+
T Consensus       147 ~v~~~~~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs  184 (388)
T d1h0ca_         147 LLFLTHGESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS  184 (388)
T ss_dssp             EEEEESEETTTTEECC----CTTHHHHHHTTTCEEEEECTTT
T ss_pred             eEEEeeeeeccccccC----HHHHHHHhhcccccceeccccc
Confidence            3333333344566655    4478889999999999999998

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=86.61  E-value=0.71  Score=30.61  Aligned_cols=46  Identities=11%  Similarity=-0.021  Sum_probs=33.3

Q ss_pred             ceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccc
Q psy1628          41 YPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGF   87 (114)
Q Consensus        41 ~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGf   87 (114)
                      ....+++....+++|. ..+.+.+..+.+.|+++|.++++|+.+.+.
T Consensus       130 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~  175 (340)
T d1svva_         130 VIPKLVYISNTTEVGT-QYTKQELEDISASCKEHGLYLFLDGARLAS  175 (340)
T ss_dssp             CEEEEEEEESSCTTSC-CCCHHHHHHHHHHHHHHTCEEEEECTTHHH
T ss_pred             Ccceeeeecccccccc-cccHHHhhhhhcccccccceeeeeccceee
Confidence            3344444445555554 445667888999999999999999999865

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.97  E-value=0.8  Score=34.81  Aligned_cols=60  Identities=18%  Similarity=0.119  Sum_probs=40.5

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccccccccCccchhhhhcCCCCCcCEEEee
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQVGFGRVGTHWWAFQLQGDDIIPDIVTVV  112 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfgRtG~~~~~~~~~g~~v~PDivt~g  112 (114)
                      .+..++.+|....- -+..++   +++++++|+++|+++|+|....+.       +.++-+.  .-.|+++-+
T Consensus       132 ~~t~li~~EtpsNP-~l~v~D---i~~i~~iA~~~g~~~vVDnT~atP-------~~~~Pl~--~GaDiVvhS  191 (380)
T d1ibja_         132 PQTKLVWLESPTNP-RQQISD---IRKISEMAHAQGALVLVDNSIMSP-------VLSRPLE--LGADIVMHS  191 (380)
T ss_dssp             SSEEEEEECSSCTT-TCCCCC---HHHHHHHHHTTTCEEEEECTTTCT-------TTCCGGG--TTCSEEEEE
T ss_pred             cCccEEEecccccc-cccccc---HHHHHHHHHHcCCeEEeecccccc-------ccccccc--cCCCEEEec
Confidence            68899999976442 233444   578899999999999999987532       1222222  336887764

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=80.65  E-value=5  Score=30.37  Aligned_cols=42  Identities=19%  Similarity=0.070  Sum_probs=33.1

Q ss_pred             CceEEEEEcccCCCCCcccCCHHHHHHHHHHHHHhCCeEEEccccc
Q psy1628          40 LYPCAFFAESLQSCGGQIIPPANYLREVYKHVRAAGGVCVADEVQV   85 (114)
Q Consensus        40 ~~iAAviiEPv~g~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t   85 (114)
                      .++..+.+|.... --+..++   ++++.++|+++|+++|+|...+
T Consensus       152 ~~t~~v~~EspsN-P~l~v~D---i~~ia~ia~~~g~~~vVDnT~a  193 (398)
T d1qgna_         152 KKVNLFFTESPTN-PFLRCVD---IELVSKLCHEKGALVCIDGTFA  193 (398)
T ss_dssp             SCEEEEEEESSCT-TTCCCCC---HHHHHHHHHHTTCEEEEECTTT
T ss_pred             ccceEEEccCccc-cccccch---HHHHHHHHhhcCCEEEecceee
Confidence            5888999997643 3344455   7899999999999999998764