Psyllid ID: psy16295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MTQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCKSYKNTASVLKKF
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHEEHHEEccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcc
Coil and Loop (DISEMBL)
MTQFNYSFCLVRSEFCADIRKGILLLEELFKTetedidrkrDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGavlaqgqgtmemsCKSYKNTASVLKKF
Flexible Loop (DISEMBL)
MTQFNYSFCLVRSEFCADIRKGILLLEELFktetedidrkrdYLYYLAIGNARIKEYTKSLKYCRAFLAiesensqvqHLESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCKSYKNTASVLKKF
Low Complexity Region (SEG)
MTQFNYSFCLVRSEFCADIRKGIllleelfkteteDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEglkgmalaggavlaqgqgTMEMSCKSYKNTASVLKKF
Disordered region (IsUnstruct)
***FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE*****HL**IV**********GMALAGGAVL************************
Disordered Region (DISOPRED)
MTQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCKSY******L*KF
Disordered Region (DISEMBL)
MTQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCKSYKNTASVLKKF
Disordered Region (DISPRO)
MTQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCKSYKNTASVLKKF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTMEMSCKSYKNTASVLKKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q9Y3D6	152	Mitochondrial fission 1 p	yes	N/A	0.796	0.671	0.509	1e-25
Q9CQ92	152	Mitochondrial fission 1 p	yes	N/A	0.796	0.671	0.5	2e-25
P84817	152	Mitochondrial fission 1 p	yes	N/A	0.796	0.671	0.5	2e-25
Q3T0I5	152	Mitochondrial fission 1 p	yes	N/A	0.796	0.671	0.5	5e-25
Q7S8M1	153	Mitochondria fission 1 pr	N/A	N/A	0.804	0.673	0.396	2e-16
Q5AZQ5	153	Mitochondria fission 1 pr	yes	N/A	0.804	0.673	0.367	2e-15
Q6CFJ0	154	Mitochondria fission 1 pr	yes	N/A	0.828	0.688	0.363	4e-15
Q4X0I8	151	Mitochondria fission 1 pr	yes	N/A	0.804	0.682	0.377	1e-14
Q2UF96	153	Mitochondria fission 1 pr	yes	N/A	0.804	0.673	0.367	2e-14
Q6FIQ1	154	Mitochondria fission 1 pr	yes	N/A	0.789	0.655	0.346	2e-13

>sp|Q9Y3D6|FIS1_HUMAN Mitochondrial fission 1 protein OS=Homo sapiens GN=FIS1 PE=1 SV=2

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVRS++  DIRKGI+LLEEL    +++   +RDY++YLA+GN R+KEY K+L
Sbjct: 34  TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
           KY R  L  E +N+Q + LE ++ K M+ +GL GMA+ GG  L 
Sbjct: 92  KYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALG 135

Promotes the fragmentation of the mitochondrial network and its perinuclear clustering. Can induce cytochrome c release from the mitochondrion to the cytosol, ultimately leading to apoptosis. Also mediates peroxisomal fission.
Homo sapiens (taxid: 9606)

>sp|Q9CQ92|FIS1_MOUSE Mitochondrial fission 1 protein OS=Mus musculus GN=Fis1 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVRS++  DIR+GI+LLEEL    +++   +RDY++YLA+GN R+KEY K+L
Sbjct: 34  TQFEYAWCLVRSKYNEDIRRGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
           KY R  L  E +N+Q + LE ++ K M+ +GL GMA+ GG  L 
Sbjct: 92  KYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALG 135

Promotes the fragmentation of the mitochondrial network and its perinuclear clustering. Can induce cytochrome c release from the mitochondrion to the cytosol, ultimately leading to apoptosis. Also mediates peroxisomal fission.

Mus musculus (taxid: 10090)

>sp|P84817|FIS1_RAT Mitochondrial fission 1 protein OS=Rattus norvegicus GN=Fis1 PE=1 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 75/104 (72%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVRS++  DIR+GI+LLEEL    +++   +RDY++YLA+GN R+KEY K+L
Sbjct: 34  TQFEYAWCLVRSKYNDDIRRGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
           KY R  L  E +N+Q + LE ++ K M+ +GL GMA+ GG  L 
Sbjct: 92  KYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALG 135

Promotes the fragmentation of the mitochondrial network and its perinuclear clustering. Can induce cytochrome c release from the mitochondrion to the cytosol, ultimately leading to apoptosis. Also mediates peroxisomal fission.

Rattus norvegicus (taxid: 10116)

>sp|Q3T0I5|FIS1_BOVIN Mitochondrial fission 1 protein OS=Bos taurus GN=FIS1 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVRS++  DIRKG+ LLEEL    +++   +RDY++YLA+GN R+KEY K+L
Sbjct: 34  TQFEYAWCLVRSKYNDDIRKGLALLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
           KY R  L  E +N+Q + LE ++ K M+ +GL GMA+ GG  L 
Sbjct: 92  KYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALG 135

Promotes the fragmentation of the mitochondrial network and its perinuclear clustering. Can induce cytochrome c release from the mitochondrion to the cytosol, ultimately leading to apoptosis.

Bos taurus (taxid: 9913)

>sp|Q7S8M1|FIS1_NEUCR Mitochondria fission 1 protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fis-1 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 66/106 (62%), Gaps = 3/106 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           T+FNY++ LV+S   AD   G++LL E+F+T  E   R+R+ LYYLA+GN ++  Y ++ 
Sbjct: 37  TKFNYAWGLVKSNVRADQHLGVMLLSEIFRTSPE---RRRECLYYLALGNYKLGNYAQAR 93

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQG 107
           KY  A L  E  N Q  +L +++  ++  EGL G+A+  G  +A G
Sbjct: 94  KYNDALLENEPANLQAANLRALIDDKVTKEGLMGVAIISGVAVAAG 139

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q5AZQ5|FIS1_EMENI Mitochondria fission 1 protein OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fis1 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 66/106 (62%), Gaps = 3/106 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           T+FNY++ L++S F AD ++G+ LL E+F+   E   R+R+ L+YLA+GN ++  Y ++ 
Sbjct: 39  TKFNYAWGLIKSNFRADQQEGVRLLSEIFRAHPE---RRRECLFYLALGNYKLGNYGEAR 95

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQG 107
           +Y    +  E  N Q   L +++  R+  EG+ G+A+ GG  LA G
Sbjct: 96  RYNDLLIDKEPGNLQAASLRTLIDDRVSREGMVGIAIVGGLALAAG 141

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q6CFJ0|FIS1_YARLI Mitochondria fission 1 protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIS1 PE=3 SV=2

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           T+FNY++ L++S    D + G+ +L +++K       R+R+ LYYLAIG+ ++ EYT + 
Sbjct: 40  TRFNYAWGLIKSRKVEDQQLGVQILAQVYKDTPS---RRRECLYYLAIGSYKLGEYTDAR 96

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQGQGTM 111
           KYC   L IE ++ Q   L  I++ ++  EG+ G+A+ GG V+A G   +
Sbjct: 97  KYCDLLLQIEPDDPQSAKLRQIIEDKLAKEGMIGIAIVGG-VIAVGAAVL 145

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q4X0I8|FIS1_ASPFU Mitochondria fission 1 protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=fis1 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 64/106 (60%), Gaps = 3/106 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           T+FNY++ L++S    D ++G+ LL E+F+   E   R+R+ LYYLA+GN ++  Y ++ 
Sbjct: 35  TKFNYAWGLIKSNARTDQQEGVRLLSEIFRAAPE---RRRECLYYLALGNYKLGNYGEAR 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQG 107
           +Y    L  E  N Q   L S++  ++  EGL G+A+ GG  LA G
Sbjct: 92  RYNDLLLEKEPGNLQAASLGSLIDDKVSKEGLMGIAIVGGLALAAG 137

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q2UF96|FIS1_ASPOR Mitochondria fission 1 protein OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=fis1 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 64/106 (60%), Gaps = 3/106 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           T+FN+++ L++S    D ++G+ LL E+F+   E   R+R+ LYYLA+GN ++  Y ++ 
Sbjct: 38  TKFNFAWGLIKSNARPDQQEGVRLLSEIFRAAPE---RRRECLYYLALGNYKLGNYGEAR 94

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQG 107
           +Y    L  E  N Q   L +++ +R+  EGL G A+ GG  LA G
Sbjct: 95  RYNDLLLEKEPANLQAASLGTLIDERVSKEGLMGFAIVGGLALAAG 140

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q6FIQ1|FIS1_CANGA Mitochondria fission 1 protein OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FIS1 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 66/104 (63%), Gaps = 3/104 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           ++FNY++ L++SE   D R G+ +L +++K   E   R+R+ LYYL +G  ++KEY+ + 
Sbjct: 41  SRFNYAWGLIKSESVDDQRLGVKILTDIYK---ESYQRRRECLYYLTVGCYKLKEYSMAK 97

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
           +Y       E  N QV  L+ +V+ +++TE +KG+A+  GA++ 
Sbjct: 98  RYVDTLHEAEPNNKQVIALKEMVEDKIQTETIKGLAMVTGAIVG 141

Has a role in mitochondrial fission. Has a role in outer membrane fission but not matrix separation.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
332017190	149	Mitochondrial fission 1 protein [Acromyr	0.789	0.677	0.644	5e-31
66505356	150	PREDICTED: mitochondrial fission 1 prote	0.796	0.68	0.615	1e-30
389609357	150	conserved hypothetical protein [Papilio	0.804	0.686	0.650	1e-30
380026816	154	PREDICTED: mitochondrial fission 1 prote	0.796	0.662	0.615	1e-30
383852657	150	PREDICTED: mitochondrial fission 1 prote	0.796	0.68	0.615	1e-30
91083777	151	PREDICTED: similar to tetratricopeptide	0.796	0.675	0.628	1e-30
340710153	150	PREDICTED: mitochondrial fission 1 prote	0.796	0.68	0.615	2e-30
322799076	226	hypothetical protein SINV_04338 [Solenop	0.781	0.442	0.631	2e-30
307207256	150	Mitochondrial fission 1 protein [Harpegn	0.796	0.68	0.625	2e-30
345482408	153	PREDICTED: mitochondrial fission 1 prote	0.796	0.666	0.615	4e-30

>gi|332017190|gb|EGI57983.1| Mitochondrial fission 1 protein [Acromyrmex echinatior]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 83/104 (79%), Gaps = 3/104 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++ ADIRKGILLLE+L+     D +R RD LYYLAIGNARIKEY+K+L
Sbjct: 34  AQFEYAWCLVRSKYSADIRKGILLLEDLYNNH--DTER-RDCLYYLAIGNARIKEYSKAL 90

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
            Y RAFL IE  N QVQHLES+++K+ME EGL GMA+AGG ++ 
Sbjct: 91  SYVRAFLQIEPANLQVQHLESLIRKKMEKEGLMGMAVAGGVIIG 134

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66505356|ref|XP_623649.1| PREDICTED: mitochondrial fission 1 protein-like [Apis mellifera]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 83/104 (79%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++ ADIRKGI+LLE+L+   ++    KRD LYYLAIGNARIKEYTK+L
Sbjct: 34  AQFEYAWCLVRSKYPADIRKGIMLLEDLYCNHSDS--EKRDCLYYLAIGNARIKEYTKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
            Y R+FL +E  N QVQHLE+++KK+ME EGL GMA+AGG ++ 
Sbjct: 92  AYVRSFLQVEPGNQQVQHLETLIKKKMEKEGLYGMAIAGGVIIG 135

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609357|dbj|BAM18290.1| conserved hypothetical protein [Papilio xuthus]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/106 (65%), Positives = 80/106 (75%), Gaps = 3/106 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++  DIRKGILLL+ELF +     D KRDYL+YLAIGNARIKEY K+L
Sbjct: 34  AQFEYAWCLVRSKYPTDIRKGILLLKELFNSHP---DGKRDYLFYLAIGNARIKEYDKAL 90

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQG 107
            Y +AFL IE  N QV  LE  + KRME EGL GMA+AGGAVLA G
Sbjct: 91  HYVKAFLEIEPANQQVLTLERQINKRMEKEGLLGMAVAGGAVLAIG 136

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026816|ref|XP_003697137.1| PREDICTED: mitochondrial fission 1 protein-like [Apis florea]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 83/104 (79%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++ ADIRKGI+LLE+L+   ++    KRD LYYLAIGNARIKEYTK+L
Sbjct: 34  AQFEYAWCLVRSKYPADIRKGIMLLEDLYCNHSDS--EKRDCLYYLAIGNARIKEYTKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
            Y R+FL +E  N QVQHLE+++KK+ME EGL GMA+AGG ++ 
Sbjct: 92  AYVRSFLQVEPGNQQVQHLETLIKKKMEKEGLYGMAIAGGVIIG 135

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852657|ref|XP_003701843.1| PREDICTED: mitochondrial fission 1 protein-like [Megachile rotundata]

 Score =  137 bits (346), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 83/104 (79%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++ ADIRKGI+LLE+L+     D   KRD LYYLAIGNARIKEY+K+L
Sbjct: 34  AQFEYAWCLVRSKYPADIRKGIILLEDLYCNH--DDSNKRDCLYYLAIGNARIKEYSKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
            Y R+FL +E +N QVQHLE+++KK+ME EGL GMA+AGG ++ 
Sbjct: 92  TYVRSFLQVEPQNRQVQHLETLIKKKMEKEGLYGMAIAGGVIIG 135

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083777|ref|XP_972333.1| PREDICTED: similar to tetratricopeptide repeat protein [Tribolium castaneum] gi|270007915|gb|EFA04363.1| hypothetical protein TcasGA2_TC014659 [Tribolium castaneum]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 82/105 (78%), Gaps = 3/105 (2%)

Query: 3   QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLK 62
           QF Y++CLVRS++ ADI+KGI+LLE+L+KT  E    +RDYLYYLAIG AR+KEYTK+L 
Sbjct: 35  QFEYAWCLVRSKYPADIQKGIILLEDLYKTHEEG---QRDYLYYLAIGTARLKEYTKALN 91

Query: 63  YCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQG 107
           Y R+FL IE  N QV  L+  +KK+ME EGL GMA+AGG VLA G
Sbjct: 92  YVRSFLLIEPGNQQVISLQQTIKKKMEKEGLVGMAMAGGVVLAVG 136

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710153|ref|XP_003393660.1| PREDICTED: mitochondrial fission 1 protein-like [Bombus terrestris] gi|350413573|ref|XP_003490037.1| PREDICTED: mitochondrial fission 1 protein-like [Bombus impatiens]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 82/104 (78%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++ ADIRKGI+LLE+L+    +    KRD LYYLAIGNARIKEYTK+L
Sbjct: 34  AQFEYAWCLVRSKYPADIRKGIMLLEDLYCNHNDS--EKRDCLYYLAIGNARIKEYTKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
            Y R+FL +E  N QVQHLE+++KK+ME EGL GMA+AGG ++ 
Sbjct: 92  AYVRSFLQVEPGNQQVQHLETLIKKKMEKEGLYGMAIAGGVIIG 135

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799076|gb|EFZ20529.1| hypothetical protein SINV_04338 [Solenopsis invicta]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 82/103 (79%), Gaps = 3/103 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++ ADIRKGILLLE+L+     +   KRD LYYLAIGNARIKEY+K+L
Sbjct: 111 AQFEYAWCLVRSKYSADIRKGILLLEDLYSNHDTE---KRDCLYYLAIGNARIKEYSKAL 167

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVL 104
            Y RAFL IE  N QVQ+LES+++K+ME EGL GMA+AGG ++
Sbjct: 168 SYVRAFLQIEPANVQVQNLESLIRKKMEKEGLMGMAVAGGVII 210

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207256|gb|EFN85033.1| Mitochondrial fission 1 protein [Harpegnathos saltator]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 82/104 (78%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++ ADIRKGILLLE+L+  +T     +RD LYYLAIGNARIKEYTK+L
Sbjct: 34  AQFEYAWCLVRSKYSADIRKGILLLEDLYSKQTGS--ERRDCLYYLAIGNARIKEYTKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
            Y RAFL +E  N QVQ LE+++KK+ME EGL GMA+AGG ++ 
Sbjct: 92  SYVRAFLQVEPGNIQVQQLETLIKKKMEKEGLLGMAVAGGVIIG 135

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482408|ref|XP_001608281.2| PREDICTED: mitochondrial fission 1 protein-like [Nasonia vitripennis]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 82/104 (78%), Gaps = 2/104 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
            QF Y++CLVRS++ ADIRKGI+LLE+L+    +    KRD LYYLAIGNARIKEY+K+L
Sbjct: 34  VQFQYAWCLVRSKYPADIRKGIMLLEDLYGRNGDS--EKRDCLYYLAIGNARIKEYSKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
            Y RAFL IE  N+QVQ LE ++KK+M+ EGLKGMA+AGG ++ 
Sbjct: 92  HYVRAFLQIEPGNTQVQRLEVLIKKKMDREGLKGMAIAGGVIVG 135

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
FB|FBgn0039969	154	Fis1 [Drosophila melanogaster	0.671	0.558	0.555	1.7e-20
UNIPROTKB|E2QTL3	152	FIS1 "Uncharacterized protein"	0.687	0.578	0.444	1.8e-16
UNIPROTKB|Q9Y3D6	152	FIS1 "Mitochondrial fission 1	0.687	0.578	0.444	2.3e-16
UNIPROTKB|Q3T0I5	152	FIS1 "Mitochondrial fission 1	0.687	0.578	0.433	2.9e-16
UNIPROTKB|I3LD01	166	FIS1 "Uncharacterized protein"	0.671	0.518	0.443	2.9e-16
MGI|MGI:1913687	152	Fis1 "fission 1 (mitochondrial	0.687	0.578	0.433	3.7e-16
UNIPROTKB|A5HUN3	152	FIS1 "Fis1 protein" [Cricetulu	0.687	0.578	0.433	4.7e-16
RGD|1306668	152	Fis1 "fission 1 (mitochondrial	0.687	0.578	0.433	4.7e-16
CGD|CAL0002844	154	orf19.7111 [Candida albicans (	0.679	0.564	0.3	1.1e-07
UNIPROTKB|Q5AFF7	154	FIS1 "Mitochondria fission 1 p	0.679	0.564	0.3	1.1e-07

FB|FBgn0039969 Fis1 [Drosophila melanogaster (taxid:7227)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 50/90 (55%), Positives = 60/90 (66%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             T+F Y+FCLVRS +  D+RKGI              D +RDY+YYLA GNARIKEYT  L
Sbjct:    35 TKFEYAFCLVRSRYTNDVRKGIMILEELARTHP---DGRRDYIYYLAFGNARIKEYTSGL 91

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             KYCRAFL IES N QV+ LE  +KK ++ E
Sbjct:    92 KYCRAFLDIES-NDQVRSLEEYIKKEIDKE 120

GO:0007005 "mitochondrion organization" evidence=IGI

UNIPROTKB|E2QTL3 FIS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 40/90 (44%), Positives = 58/90 (64%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             TQF Y++CLVRS++  DIRKGI            +   +RDY++YLA+GN R+KEY K+L
Sbjct:    34 TQFEYAWCLVRSKYNDDIRKGIALLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             KY R  L  E +N+Q + LE ++ K M+ +
Sbjct:    92 KYVRGLLQTEPQNNQAKELERLIDKAMKKD 121

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0016559 "peroxisome fission" evidence=IEA

GO:0010821 "regulation of mitochondrion organization" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

UNIPROTKB|Q9Y3D6 FIS1 "Mitochondrial fission 1 protein" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 40/90 (44%), Positives = 58/90 (64%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             TQF Y++CLVRS++  DIRKGI            +   +RDY++YLA+GN R+KEY K+L
Sbjct:    34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             KY R  L  E +N+Q + LE ++ K M+ +
Sbjct:    92 KYVRGLLQTEPQNNQAKELERLIDKAMKKD 121

GO:0016559 "peroxisome fission" evidence=IMP;IDA

GO:0000266 "mitochondrial fission" evidence=IMP;IDA

GO:0006915 "apoptotic process" evidence=IDA

GO:0031307 "integral to mitochondrial outer membrane" evidence=NAS;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IMP

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IMP

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IMP

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IMP

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IMP

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IDA;IMP

GO:0000422 "mitochondrion degradation" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0005777 "peroxisome" evidence=ISS;IDA

GO:0051260 "protein homooligomerization" evidence=IMP

GO:0006626 "protein targeting to mitochondrion" evidence=IMP

GO:0070584 "mitochondrion morphogenesis" evidence=IMP

GO:0005102 "receptor binding" evidence=IPI

GO:0010821 "regulation of mitochondrion organization" evidence=IMP

UNIPROTKB|Q3T0I5 FIS1 "Mitochondrial fission 1 protein" [Bos taurus (taxid:9913)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/90 (43%), Positives = 58/90 (64%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             TQF Y++CLVRS++  DIRKG+            +   +RDY++YLA+GN R+KEY K+L
Sbjct:    34 TQFEYAWCLVRSKYNDDIRKGLALLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             KY R  L  E +N+Q + LE ++ K M+ +
Sbjct:    92 KYVRGLLQTEPQNNQAKELERLIDKAMKKD 121

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0016559 "peroxisome fission" evidence=IEA

GO:0010821 "regulation of mitochondrion organization" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

UNIPROTKB|I3LD01 FIS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 39/88 (44%), Positives = 57/88 (64%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             TQF Y++CLVRS++  DIRKG+            +   +RDY++YLA+GN R+KEY K+L
Sbjct:    34 TQFEYAWCLVRSKYNDDIRKGLALLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRME 89
             KY R  L  E +N+Q + LE ++ K M+
Sbjct:    92 KYVRGLLQTEPQNNQAKELEGLIDKAMK 119

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA

GO:0070584 "mitochondrion morphogenesis" evidence=IEA

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IEA

GO:0031307 "integral to mitochondrial outer membrane" evidence=IEA

GO:0016559 "peroxisome fission" evidence=IEA

GO:0010821 "regulation of mitochondrion organization" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0005779 "integral to peroxisomal membrane" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA

GO:0000422 "mitochondrion degradation" evidence=IEA

MGI|MGI:1913687 Fis1 "fission 1 (mitochondrial outer membrane) homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 39/90 (43%), Positives = 58/90 (64%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             TQF Y++CLVRS++  DIR+GI            +   +RDY++YLA+GN R+KEY K+L
Sbjct:    34 TQFEYAWCLVRSKYNEDIRRGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             KY R  L  E +N+Q + LE ++ K M+ +
Sbjct:    92 KYVRGLLQTEPQNNQAKELERLIDKAMKKD 121

GO:0000266 "mitochondrial fission" evidence=ISO

GO:0000422 "mitochondrion degradation" evidence=ISO

GO:0001836 "release of cytochrome c from mitochondria" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=ISO;ISS

GO:0005779 "integral to peroxisomal membrane" evidence=ISO

GO:0006626 "protein targeting to mitochondrion" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0010821 "regulation of mitochondrion organization" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016559 "peroxisome fission" evidence=ISO;ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISO

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=ISO

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=ISO

GO:0051260 "protein homooligomerization" evidence=ISO

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=ISO

GO:0070584 "mitochondrion morphogenesis" evidence=ISO

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=ISO

UNIPROTKB|A5HUN3 FIS1 "Fis1 protein" [Cricetulus griseus (taxid:10029)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 39/90 (43%), Positives = 58/90 (64%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             TQF Y++CLVRS++  DIR+GI            +   +RDY++YLA+GN R+KEY K+L
Sbjct:    34 TQFEYAWCLVRSKYNDDIRRGIMLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             KY R  L  E +N+Q + LE ++ K M+ +
Sbjct:    92 KYVRGLLQTEPQNNQAKELERLIDKAMKKD 121

GO:0016559 "peroxisome fission" evidence=IMP

RGD|1306668 Fis1 "fission 1 (mitochondrial outer membrane) homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 39/90 (43%), Positives = 58/90 (64%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             TQF Y++CLVRS++  DIR+GI            +   +RDY++YLA+GN R+KEY K+L
Sbjct:    34 TQFEYAWCLVRSKYNDDIRRGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             KY R  L  E +N+Q + LE ++ K M+ +
Sbjct:    92 KYVRGLLQTEPQNNQAKELERLIDKAMKKD 121

GO:0000266 "mitochondrial fission" evidence=ISO;ISS

GO:0000422 "mitochondrion degradation" evidence=IEA;ISO

GO:0001836 "release of cytochrome c from mitochondria" evidence=IEA;ISO

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=ISO;ISS

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=ISO;ISS

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=IEA;ISO

GO:0010821 "regulation of mitochondrion organization" evidence=IEA;ISO

GO:0016559 "peroxisome fission" evidence=ISO;ISS

GO:0031307 "integral to mitochondrial outer membrane" evidence=ISO;ISS

GO:0032471 "reduction of endoplasmic reticulum calcium ion concentration" evidence=IEA;ISO

GO:0035584 "calcium-mediated signaling using intracellular calcium source" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IEA;ISO

GO:0043280 "positive regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0043653 "mitochondrial fragmentation involved in apoptotic process" evidence=IEA;ISO

GO:0051260 "protein homooligomerization" evidence=IEA;ISO

GO:0051561 "elevation of mitochondrial calcium ion concentration" evidence=IEA;ISO

GO:0070584 "mitochondrion morphogenesis" evidence=IEA;ISO

GO:2001244 "positive regulation of intrinsic apoptotic signaling pathway" evidence=IEA;ISO

CGD|CAL0002844 orf19.7111 [Candida albicans (taxid:5476)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             T+FNY++ L++S        G+            +   +R+ LYYL++G+ +I +YT + 
Sbjct:    40 TKFNYAWGLIKSNHHKQQEYGVQILTELYKS---EKSMRREVLYYLSLGSLKIGDYTNAK 96

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             +Y  A L IE EN Q + L   +  ++ TE
Sbjct:    97 RYVEALLEIEPENQQARGLLKTIDDKITTE 126

GO:0003674 "molecular_function" evidence=ND

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0001300 "chronological cell aging" evidence=IEA

GO:0000266 "mitochondrial fission" evidence=IEA

GO:0016559 "peroxisome fission" evidence=IEA

UNIPROTKB|Q5AFF7 FIS1 "Mitochondria fission 1 protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query:     2 TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
             T+FNY++ L++S        G+            +   +R+ LYYL++G+ +I +YT + 
Sbjct:    40 TKFNYAWGLIKSNHHKQQEYGVQILTELYKS---EKSMRREVLYYLSLGSLKIGDYTNAK 96

Query:    62 KYCRAFLAIESENSQVQHLESIVKKRMETE 91
             +Y  A L IE EN Q + L   +  ++ TE
Sbjct:    97 RYVEALLEIEPENQQARGLLKTIDDKITTE 126

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y3D6	FIS1_HUMAN	No assigned EC number	0.5096	0.7968	0.6710	yes	N/A
Q4X0I8	FIS1_ASPFU	No assigned EC number	0.3773	0.8046	0.6821	yes	N/A
Q5AZQ5	FIS1_EMENI	No assigned EC number	0.3679	0.8046	0.6732	yes	N/A
P40515	FIS1_YEAST	No assigned EC number	0.375	0.7812	0.6451	yes	N/A
Q4IBU4	FIS1_GIBZE	No assigned EC number	0.3608	0.7343	0.6143	yes	N/A
P84817	FIS1_RAT	No assigned EC number	0.5	0.7968	0.6710	yes	N/A
Q6FIQ1	FIS1_CANGA	No assigned EC number	0.3461	0.7890	0.6558	yes	N/A
Q6CU37	FIS1_KLULA	No assigned EC number	0.375	0.8359	0.6903	yes	N/A
Q2UF96	FIS1_ASPOR	No assigned EC number	0.3679	0.8046	0.6732	yes	N/A
Q6CFJ0	FIS1_YARLI	No assigned EC number	0.3636	0.8281	0.6883	yes	N/A
Q3T0I5	FIS1_BOVIN	No assigned EC number	0.5	0.7968	0.6710	yes	N/A
Q9CQ92	FIS1_MOUSE	No assigned EC number	0.5	0.7968	0.6710	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	128
cd12212	113	cd12212, Fis1, Mitochondria Fission Protein Fis1,	4e-28

>gnl|CDD|213405 cd12212, Fis1, Mitochondria Fission Protein Fis1, cytosolic domain

 Score = 99.1 bits (248), Expect = 4e-28
 Identities = 32/92 (34%), Positives = 58/92 (63%), Gaps = 3/92 (3%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           T+FNY++ L++S    D ++G+ LL E+++   E   R+R+ LYYLA+GN ++  Y+++ 
Sbjct: 25  TKFNYAWGLIKSNSREDQQEGVRLLTEIYRESPE---RRRECLYYLALGNYKLGNYSEAR 81

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGL 93
           +Y    L  E +N Q Q L+ ++  ++  EGL
Sbjct: 82  RYNDLLLEKEPDNLQAQSLKQLIDDKVAKEGL 113

Fis1, along with Dnm1 and Mdv1, is an essential protein in mediating mitochondrial fission. Dnm1 and Fis1 are highly conserved, with a common mechanism in disparate species. In mutants of these proteins, mitochondrial fission is impaired, resulting in networks of undivided mitochondria. The Fis1 N-terminus is cytosolic and tethered to the mitochondrial outer membrane via a C-terminal transmembrane domain. Fis1 appears to act via the recruitment of division complexes to the mitochondrial outer membrane, via interactions with Mdv1 or Caf4. Fis1 has tandem TPR helix-turn-helix motifs which are known to mediate protein-protein interactions. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG3364|consensus	149		100.0
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	99.93
PF14852	35	Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repe	99.57
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.79
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.74
PF13371	73	TPR_9: Tetratricopeptide repeat	98.64
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.55
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.52
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.34
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.28
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.27
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.18
PRK15359	144	type III secretion system chaperone protein SscB;	98.15
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.13
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.08
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.05
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.0
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.91
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.77
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.75
PRK10803	263	tol-pal system protein YbgF; Provisional	97.72
PF13428	44	TPR_14: Tetratricopeptide repeat	97.69
PRK15359	144	type III secretion system chaperone protein SscB;	97.69
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.67
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.65
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.64
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.6
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.58
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.55
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.55
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.5
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.5
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.48
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	97.4
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.38
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	97.25
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.23
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.2
PRK11189	296	lipoprotein NlpI; Provisional	97.14
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.1
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.09
PF12688	120	TPR_5: Tetratrico peptide repeat	97.07
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	97.05
PRK10803	263	tol-pal system protein YbgF; Provisional	97.03
PRK12370	553	invasion protein regulator; Provisional	97.02
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.01
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.99
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.99
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.93
PRK12370	553	invasion protein regulator; Provisional	96.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.86
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	96.83
KOG0543|consensus	397		96.81
PF13512	142	TPR_18: Tetratricopeptide repeat	96.79
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.78
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.63
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.6
PRK11189	296	lipoprotein NlpI; Provisional	96.56
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	96.52
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	96.52
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.5
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.42
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.37
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.34
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.31
PF13371	73	TPR_9: Tetratricopeptide repeat	96.28
KOG1126|consensus	638		96.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.13
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	96.12
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	96.11
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.1
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	96.07
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	96.07
PLN02789	320	farnesyltranstransferase	96.02
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.0
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	95.9
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.89
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.88
PLN02789	320	farnesyltranstransferase	95.81
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	95.75
PRK11788	389	tetratricopeptide repeat protein; Provisional	95.68
KOG2002|consensus	1018		95.61
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	95.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.46
PRK14720	906	transcript cleavage factor/unknown domain fusion p	95.44
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.3
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.18
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	95.15
KOG0553|consensus	304		95.03
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.03
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.0
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	94.96
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	94.91
PRK14574	822	hmsH outer membrane protein; Provisional	94.83
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.8
PF13431	34	TPR_17: Tetratricopeptide repeat	94.75
KOG0543|consensus	397		94.63
KOG1125|consensus	579		94.57
KOG2076|consensus	895		94.4
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.36
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.2
KOG1156|consensus	700		94.16
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	94.12
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.07
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	93.92
KOG4162|consensus	799		93.67
PRK11906	458	transcriptional regulator; Provisional	93.56
KOG0548|consensus	539		92.85
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	92.78
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	92.77
PRK11906	458	transcriptional regulator; Provisional	92.54
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	92.12
KOG0553|consensus	304		92.06
KOG3081|consensus	299		91.94
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	91.87
PF12688	120	TPR_5: Tetratrico peptide repeat	91.76
PF03704	146	BTAD: Bacterial transcriptional activator domain;	91.68
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.55
PF03704	146	BTAD: Bacterial transcriptional activator domain;	91.41
PRK15331	165	chaperone protein SicA; Provisional	91.38
PRK10941	269	hypothetical protein; Provisional	91.32
COG4976	287	Predicted methyltransferase (contains TPR repeat)	91.26
PF13428	44	TPR_14: Tetratricopeptide repeat	91.08
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	91.07
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	90.9
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	90.39
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	89.92
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.66
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	89.14
KOG1840|consensus	508		88.64
KOG1174|consensus	564		88.54
KOG2581|consensus	493		88.43
COG3763	71	Uncharacterized protein conserved in bacteria [Fun	88.27
KOG4162|consensus	799		88.11
KOG3785|consensus	557		88.05
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.51
PRK00523	72	hypothetical protein; Provisional	87.42
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	87.34
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	87.25
KOG0548|consensus	539		87.22
PRK14574	822	hmsH outer membrane protein; Provisional	86.92
KOG1128|consensus	777		86.91
KOG1155|consensus	559		86.91
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	86.46
KOG1173|consensus	611		86.18
KOG4234|consensus	271		86.03
KOG0624|consensus	504		86.02
KOG4340|consensus	459		85.19
KOG1125|consensus	579		85.11
KOG3060|consensus	289		84.82
KOG0624|consensus	504		84.6
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	84.38
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	84.32
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	83.9
KOG2076|consensus	895		83.71
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	83.64
KOG1129|consensus	478		83.51
KOG1174|consensus	564		83.32
PF13512	142	TPR_18: Tetratricopeptide repeat	83.2
KOG3785|consensus	557		83.17
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	82.85
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	82.79
KOG4626|consensus	966		82.62
PRK01844	72	hypothetical protein; Provisional	82.58
KOG0376|consensus	476		82.46
KOG1126|consensus	638		82.3
COG4783	484	Putative Zn-dependent protease, contains TPR repea	82.05
PRK15331	165	chaperone protein SicA; Provisional	81.96
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.76
PF13830	324	DUF4192: Domain of unknown function (DUF4192)	81.37
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	81.13
KOG2002|consensus	1018		80.22
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	80.16

>KOG3364|consensus

Probab=100.00  E-value=5.6e-45  Score=272.85  Aligned_cols=109  Identities=43%  Similarity=0.748  Sum_probs=102.3

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ++||||||||||++.+|+++||.+|+++++++.|  +++|||+||||+||||+|+|++|++|++++|++||+|+||..||
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~--~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHP--ERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCc--ccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            6999999999999999999999999999985436  89999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhhHHH
Q psy16295         82 SIVKKRMETEGLKGMALAGGAVLAQGQGTME  112 (128)
Q Consensus        82 ~~Ie~~i~kdGliG~~i~gga~~~~g~~~~~  112 (128)
                      +.|+++|+|||+|||+|+||+++++|++..+
T Consensus       112 ~~ied~itkegliGm~v~gGa~~~v~gl~g~  142 (149)
T KOG3364|consen  112 ETIEDKITKEGLIGMVVVGGAALAVGGLAGI  142 (149)
T ss_pred             HHHHHHHhhcceeeeeehhhHHHHHHHHHHH
Confidence            9999999999999999999999777755433

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=99.93  E-value=7.4e-26  Score=144.53  Aligned_cols=53  Identities=45%  Similarity=0.913  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhHH
Q psy16295         41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGL   93 (128)
Q Consensus        41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~kdGl   93 (128)
                      |||+||||+||||+|||++|++|++.+|++||+|+||++|+++|+++|++||+
T Consensus         1 Rd~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kdgl   53 (53)
T PF14853_consen    1 RDCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKDGL   53 (53)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred             ChhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999996

>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A

Probab=99.57  E-value=2.3e-15  Score=88.88  Aligned_cols=32  Identities=53%  Similarity=0.832  Sum_probs=31.1

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhcc
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTE   33 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~   33 (128)
                      |+||||||||||++++|+++||.||+++++++
T Consensus         3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~   34 (35)
T PF14852_consen    3 TQFNYAWGLVKSNNREDQQEGIALLEELYRDE   34 (35)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred             chhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence            79999999999999999999999999999987

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.79  E-value=4.2e-08  Score=61.76  Aligned_cols=65  Identities=18%  Similarity=0.316  Sum_probs=56.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      |..|..+..+.   +..++++.++++++.+ |   ...+.+|.+|..++++|+|++|+.+++.+++..|+|+
T Consensus         1 ~~~a~~~~~~g---~~~~A~~~~~~~l~~~-P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQG---DYDEAIAAFEQALKQD-P---DNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCT---HHHHHHHHHHHHHCCS-T---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcC---CHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            45667777766   4568999999999999 7   6999999999999999999999999999999999985

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.74  E-value=3.7e-08  Score=62.14  Aligned_cols=64  Identities=19%  Similarity=0.263  Sum_probs=58.5

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      .+..++++++++++..+ |   ...+.++.+|..+++.|+|++|+..++.++..+|+|+....|+..|
T Consensus         5 ~~~~~A~~~~~~~l~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRN-P---DNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             THHHHHHHHHHHHHHHT-T---TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            56779999999999999 7   6899999999999999999999999999999999999999988654

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.64  E-value=1.3e-07  Score=60.42  Aligned_cols=66  Identities=12%  Similarity=0.222  Sum_probs=60.1

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      .++..++++.++..++-+ |   .....++..|..++++|+|++|++.++..|+..|+++++..++..++
T Consensus         8 ~~~~~~A~~~~~~~l~~~-p---~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l~   73 (73)
T PF13371_consen    8 QEDYEEALEVLERALELD-P---DDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAMLN   73 (73)
T ss_pred             CCCHHHHHHHHHHHHHhC-c---ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhcC
Confidence            346678999999999998 7   68999999999999999999999999999999999999999988763

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.55  E-value=4.4e-07  Score=70.12  Aligned_cols=79  Identities=10%  Similarity=0.084  Sum_probs=67.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .++||-+|..+.+..+..+++++|++.++.+ |   ...+.++.+|+.++++|||++|..+|+.+|+.+|.+.+...+-+
T Consensus       110 ~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P---~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~  185 (198)
T PRK10370        110 YAALATVLYYQAGQHMTPQTREMIDKALALD-A---NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVE  185 (198)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-C---CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            4678888866665555678999999999999 6   67899999999999999999999999999999999988776555


Q ss_pred             HHH
Q psy16295         83 IVK   85 (128)
Q Consensus        83 ~Ie   85 (128)
                      -|+
T Consensus       186 ~i~  188 (198)
T PRK10370        186 SIN  188 (198)
T ss_pred             HHH
Confidence            444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=3.5e-07  Score=75.81  Aligned_cols=77  Identities=13%  Similarity=0.073  Sum_probs=71.4

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      -.||.+|++|.++.+..++..+|++.++.+ |   .....+||||++++..|||.+|..+|+.+|+..|.|.-.+++-+.
T Consensus       194 ~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~---~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~  269 (287)
T COG4235         194 LGLAEALYYQAGQQMTAKARALLRQALALD-P---ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER  269 (287)
T ss_pred             HHHHHHHHHhcCCcccHHHHHHHHHHHhcC-C---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            469999999999999999999999999999 6   689999999999999999999999999999999999988877554


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus       270 ~  270 (287)
T COG4235         270 S  270 (287)
T ss_pred             H
Confidence            4

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.34  E-value=1e-06  Score=48.73  Aligned_cols=33  Identities=21%  Similarity=0.529  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      +.+|.+|..++++|+|++|+++++..++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999997

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.28  E-value=5.4e-06  Score=52.35  Aligned_cols=62  Identities=13%  Similarity=0.319  Sum_probs=53.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcCC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIES   72 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~eP   72 (128)
                      ++.|..+.+   ..+..+++..++..++-+ |   ...+.+|.+|++|.++| +|++|+++++..|+++|
T Consensus         7 ~~~g~~~~~---~~~~~~A~~~~~~ai~~~-p---~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    7 YNLGQIYFQ---QGDYEEAIEYFEKAIELD-P---NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHH---TTHHHHHHHHHHHHHHHS-T---THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHH---cCCHHHHHHHHHHHHHcC-C---CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            455666665   446778999999999998 6   68999999999999999 89999999999999999

...

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.27  E-value=1.1e-05  Score=56.38  Aligned_cols=76  Identities=13%  Similarity=0.169  Sum_probs=42.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+.+|+++....+   ..+++++++.+...+ |   ...+.++.+|..++++|+|++|..+++.+++.+|+|.+..-...
T Consensus        20 ~~~~a~~~~~~~~---~~~A~~~~~~~~~~~-p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la   92 (135)
T TIGR02552        20 IYALAYNLYQQGR---YDEALKLFQLLAAYD-P---YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA   92 (135)
T ss_pred             HHHHHHHHHHccc---HHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            3455555555443   334556666655555 3   34566666666666666666666666666666666655554444


Q ss_pred             HHH
Q psy16295         83 IVK   85 (128)
Q Consensus        83 ~Ie   85 (128)
                      .+.
T Consensus        93 ~~~   95 (135)
T TIGR02552        93 ECL   95 (135)
T ss_pred             HHH
Confidence            443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.18  E-value=1.7e-05  Score=66.25  Aligned_cols=82  Identities=6%  Similarity=0.067  Sum_probs=71.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|.++.+..   +..+++..++..++-+ |   ...+.++.+|.+++++|+|++|+.+++.+++++|+|.++..+..
T Consensus        39 ~~~~a~~~~~~g---~~~eAl~~~~~Al~l~-P---~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~  111 (356)
T PLN03088         39 YADRAQANIKLG---NFTEAVADANKAIELD-P---SLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIK  111 (356)
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            356677777654   5568999999999988 6   57889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy16295         83 IVKKRMETE   91 (128)
Q Consensus        83 ~Ie~~i~kd   91 (128)
                      .++.++..+
T Consensus       112 ~~~~kl~~~  120 (356)
T PLN03088        112 ECDEKIAEE  120 (356)
T ss_pred             HHHHHHHhh
Confidence            999888654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.15  E-value=2.3e-05  Score=57.34  Aligned_cols=66  Identities=5%  Similarity=0.036  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~   87 (128)
                      +..++++.++..+.-+ |   ...+.++.+++.+.++|++++|+.+++..++..|+|.+...++..+...
T Consensus        73 ~~~~A~~~y~~Al~l~-p---~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         73 EYTTAINFYGHALMLD-A---SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             hHHHHHHHHHHHHhcC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            3445666666666666 4   4667777777777777777777777777777777777777776666544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.13  E-value=3.9e-06  Score=46.86  Aligned_cols=33  Identities=21%  Similarity=0.494  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      +.+|.+|..++.+|+|++|..++++.|+++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.08  E-value=5e-05  Score=53.00  Aligned_cols=79  Identities=14%  Similarity=0.078  Sum_probs=66.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.|+++.+.   .+..+++..++..++.+ |   ...+.+|++|..++..|+|++|.++++..++.+|++.....+++.
T Consensus        55 ~~la~~~~~~---~~~~~A~~~~~~~~~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  127 (135)
T TIGR02552        55 LGLAACCQML---KEYEEAIDAYALAAALD-P---DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKER  127 (135)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHhcC-C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            4556666655   34568999999988888 6   579999999999999999999999999999999999998888887


Q ss_pred             HHHHHh
Q psy16295         84 VKKRME   89 (128)
Q Consensus        84 Ie~~i~   89 (128)
                      +.+.+.
T Consensus       128 ~~~~~~  133 (135)
T TIGR02552       128 AEAMLE  133 (135)
T ss_pred             HHHHHh
Confidence            776553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.05  E-value=1e-05  Score=53.48  Aligned_cols=65  Identities=18%  Similarity=0.334  Sum_probs=53.6

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ..+..++|.+++.++..+ |. ....+++|.+|..+|++|+|++|..+++. ++.+|.|.+..-+...
T Consensus         2 ~~~y~~Ai~~~~k~~~~~-~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~   66 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELD-PT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLAR   66 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHH-CG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHC-CC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHH
Confidence            457789999999999998 51 12567888899999999999999999999 9999988777666543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.00  E-value=5.2e-05  Score=50.91  Aligned_cols=69  Identities=12%  Similarity=0.174  Sum_probs=44.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .|+.+-.+....   +..++++.++.+.... |+.....+..|.++..+++.|+|++|..+++.+++..|+++
T Consensus         5 ~~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (119)
T TIGR02795         5 YYDAALLVLKAG---DYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP   73 (119)
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence            455555555543   4456777777776665 32123356777777777777777777777777777777763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.91  E-value=0.00039  Score=42.03  Aligned_cols=69  Identities=16%  Similarity=0.271  Sum_probs=57.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      .++.|..+....   +..+++..++..++.. |   ...+.++.+|..++..++|++|.++++..++..|.+.++.
T Consensus         3 ~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~   71 (100)
T cd00189           3 LLNLGNLYYKLG---DYDEALEYYEKALELD-P---DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY   71 (100)
T ss_pred             HHHHHHHHHHHh---cHHHHHHHHHHHHhcC-C---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHH
Confidence            466777777644   5567999999999887 5   3458999999999999999999999999999999998444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.77  E-value=0.00031  Score=47.08  Aligned_cols=75  Identities=8%  Similarity=0.008  Sum_probs=60.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      .|.++.++.+..+   ..+++.+++.++... |+.....+.++.++..+.+++++++|.++++.+++..|++.+++.-.
T Consensus        42 ~~~l~~~~~~~~~---~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        42 HYWLGEAYYAQGK---YADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             HHHHHHHHHhhcc---HHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            4566666666554   457999999999876 52123478999999999999999999999999999999999887653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.75  E-value=6.2e-05  Score=41.03  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      |.+|.+|..++++|++++|+++++.+++.-|+.
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            679999999999999999999999999999974

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.72  E-value=0.00021  Score=58.08  Aligned_cols=75  Identities=13%  Similarity=0.196  Sum_probs=62.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      .|++|.+|+...  .+..++|..|+.+++.. |+.....+.+|++|..+|..|+|++|+.+++.+++..|+++-+-.-
T Consensus       145 ~Y~~A~~l~~~~--~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        145 DYNAAIALVQDK--SRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHhc--CCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            578899986543  45568999999999988 7434457999999999999999999999999999999997655433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.69  E-value=0.00013  Score=43.46  Aligned_cols=40  Identities=15%  Similarity=0.151  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      +-++.+|-.+.++|++++|++.++.+|+.+|+|..+....
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            5688999999999999999999999999999999887543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.69  E-value=0.0003  Score=51.46  Aligned_cols=77  Identities=13%  Similarity=0.154  Sum_probs=63.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.++++....   +..++++.++.++..+ |   ...+.++.+|..+.++|+|++|..+++..++.+|+|..+..-.-.
T Consensus        28 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-P---~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~  100 (144)
T PRK15359         28 YASGYASWQEG---DYSRAVIDFSWLVMAQ-P---WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGV  100 (144)
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHcC-C---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            45566665544   4557999999999998 6   689999999999999999999999999999999999888766555


Q ss_pred             HHHH
Q psy16295         84 VKKR   87 (128)
Q Consensus        84 Ie~~   87 (128)
                      +-.+
T Consensus       101 ~l~~  104 (144)
T PRK15359        101 CLKM  104 (144)
T ss_pred             HHHH
Confidence            4433

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.67  E-value=0.00017  Score=57.54  Aligned_cols=61  Identities=10%  Similarity=0.061  Sum_probs=52.8

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      .+..++++.++++.... |.+.....-.|.+|.+||+++||++|+.+.+.+++..|+|+.+-
T Consensus        46 g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         46 GNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            45568999999998876 65456667789999999999999999999999999999998764

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.65  E-value=0.00048  Score=41.63  Aligned_cols=63  Identities=11%  Similarity=0.262  Sum_probs=52.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~   73 (128)
                      +.+|.++...   .+..++++.++..++.. |   ...+.++.++..+..+|++++|..+++.+++..|+
T Consensus        38 ~~~~~~~~~~---~~~~~a~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          38 YNLAAAYYKL---GKYEEALEDYEKALELD-P---DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHhCC-C---cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            4556666554   55678999999999887 5   45689999999999999999999999999999884

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.64  E-value=0.00069  Score=48.84  Aligned_cols=70  Identities=13%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      .++.|+.+....+   ..++++.+++.++.+ |   ...+.++.++..+.++|+|++|+++++..++..|++..+..
T Consensus        34 ~~~la~~~~~~~~---~~~A~~~~~~~l~~~-p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  103 (234)
T TIGR02521        34 RVQLALGYLEQGD---LEVAKENLDKALEHD-P---DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN  103 (234)
T ss_pred             HHHHHHHHHHCCC---HHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            4567788877654   558999999998887 6   56789999999999999999999999999999999976543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.60  E-value=0.00078  Score=49.97  Aligned_cols=80  Identities=19%  Similarity=0.242  Sum_probs=61.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|+.+..+...   .+..+++..+++.++.. |+.......++.+|..++++|+|++|+.+++..++..|++.++.....
T Consensus        38 ~~~lg~~~~~~---g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         38 YYRDGMSAQAD---GEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHc---CCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            35555555544   45568999999998765 311234579999999999999999999999999999999998876555


Q ss_pred             HHHH
Q psy16295         83 IVKK   86 (128)
Q Consensus        83 ~Ie~   86 (128)
                      .+-.
T Consensus       114 ~~~~  117 (172)
T PRK02603        114 VIYH  117 (172)
T ss_pred             HHHH
Confidence            5443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.59  E-value=0.00028  Score=46.50  Aligned_cols=56  Identities=21%  Similarity=0.358  Sum_probs=45.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRA   66 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~   66 (128)
                      .|++|.++.++.+   ..+++++++. .+.+ |   ...++.|++|-+++++|+|++|++..+.
T Consensus        28 ~~~la~~~~~~~~---y~~A~~~~~~-~~~~-~---~~~~~~~l~a~~~~~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   28 LYNLAQCYFQQGK---YEEAIELLQK-LKLD-P---SNPDIHYLLARCLLKLGKYEEAIKALEK   83 (84)
T ss_dssp             HHHHHHHHHHTTH---HHHHHHHHHC-HTHH-H---CHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCC---HHHHHHHHHH-hCCC-C---CCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3566888888874   4689999999 5555 3   5689999999999999999999998875

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.58  E-value=0.00016  Score=57.04  Aligned_cols=71  Identities=15%  Similarity=0.194  Sum_probs=54.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      ...++|.|+...+..+   ..++|+.+.+.. |   ...+.+..+|.++.++|+|++|+.+++.+++..|+|+.....
T Consensus       183 ~~~l~~~li~~~~~~~---~~~~l~~~~~~~-~---~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~  253 (280)
T PF13429_consen  183 RNALAWLLIDMGDYDE---AREALKRLLKAA-P---DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLA  253 (280)
T ss_dssp             HHHHHHHHCTTCHHHH---HHHHHHHHHHH--H---TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred             HHHHHHHHHHCCChHH---HHHHHHHHHHHC-c---CHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence            4678999998876665   445555555554 3   356688899999999999999999999999999999987654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.55  E-value=0.00013  Score=40.35  Aligned_cols=33  Identities=21%  Similarity=0.443  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      +.++.+|..+..+|+|++|.++++..++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            468899999999999999999999999999965

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.55  E-value=0.00039  Score=53.49  Aligned_cols=72  Identities=13%  Similarity=0.220  Sum_probs=56.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      .|+-|..+....   +..++|+.|+++...- |.+....+..+.+|.++|+.|||++|+..++.+++.-|+++.+-
T Consensus         8 lY~~a~~~~~~g---~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~   79 (203)
T PF13525_consen    8 LYQKALEALQQG---DYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD   79 (203)
T ss_dssp             HHHHHHHHHHCT----HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            355666666655   4568999999999885 55568899999999999999999999999999999999988643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.50  E-value=0.0005  Score=57.47  Aligned_cols=68  Identities=7%  Similarity=0.131  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      .+..++++++++.++.+ |   ...++++.+|.++.++|+|++|+.+++.+++++|++.++.-.+-.+--.+
T Consensus        16 ~~~~~Ai~~~~~Al~~~-P---~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088         16 DDFALAVDLYTQAIDLD-P---NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            35668999999999998 6   57899999999999999999999999999999999999887776654433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.50  E-value=0.00082  Score=51.25  Aligned_cols=72  Identities=11%  Similarity=0.078  Sum_probs=59.8

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      ..|+.+.++....+.   ..++..+++++... |+.....+.+|.+|..+++.|+|++|+..++.+++..|++..+
T Consensus        35 ~~~~~g~~~~~~~~~---~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        35 ELYEEAKEALDSGDY---TEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             HHHHHHHHHHHcCCH---HHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            357788888876654   47899999998887 5322456889999999999999999999999999999998874

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.50  E-value=0.00031  Score=43.86  Aligned_cols=45  Identities=16%  Similarity=0.149  Sum_probs=40.1

Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         45 YYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        45 YyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      |-+|..+++.|+|++|++.++.+++.+|+|.++..+.-.+.-...
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g   45 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG   45 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            567999999999999999999999999999999998888765443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.48  E-value=0.00074  Score=52.14  Aligned_cols=64  Identities=13%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      .++..+.+..|+..++.+ |   ...+.|+.|+..+..+|+|++|..+++..++++|+|.++..-...
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P---~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-P---QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            567788999999999999 7   689999999999999999999999999999999999998766554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=97.40  E-value=0.0029  Score=45.57  Aligned_cols=77  Identities=13%  Similarity=0.141  Sum_probs=49.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++++.+....   +..++++.++..+.....  ....+.++.++..+++.|+|++|..+++..++.+|++..+.....
T Consensus       102 ~~~~~~~~~~~g---~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la  176 (234)
T TIGR02521       102 LNNYGTFLCQQG---KYEQAMQQFEQAIEDPLY--PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELA  176 (234)
T ss_pred             HHHHHHHHHHcc---cHHHHHHHHHHHHhcccc--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHH
Confidence            356666666544   445677777776654211  234566777777777777777777777777777777766554433


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus       177 ~~  178 (234)
T TIGR02521       177 EL  178 (234)
T ss_pred             HH
Confidence            33

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.38  E-value=0.0007  Score=42.50  Aligned_cols=50  Identities=10%  Similarity=0.214  Sum_probs=43.9

Q ss_pred             hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      +-+.++.+|..+++.|+|++|+.+++..++++|+|..+.--...+..+..
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            35789999999999999999999999999999999998777777766554

...

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=97.25  E-value=0.0025  Score=56.08  Aligned_cols=69  Identities=12%  Similarity=0.019  Sum_probs=56.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      +++|+++....   +..+++..++..+..+ |   ...+++|.++..++.+|+|++|+.+++..|+++|+|..+..
T Consensus       369 ~~la~~~~~~g---~~~eA~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~  437 (615)
T TIGR00990       369 IKRASMNLELG---DPDKAEEDFDKALKLN-S---EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHI  437 (615)
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHH
Confidence            45666666544   4567888899888887 6   56899999999999999999999999999999999876654

>smart00028 TPR Tetratricopeptide repeats

Probab=97.23  E-value=0.00089  Score=33.67  Aligned_cols=33  Identities=24%  Similarity=0.531  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      +.++.+|..+..+++|++|..+++..++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            568899999999999999999999999999974

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.20  E-value=0.0021  Score=60.82  Aligned_cols=73  Identities=19%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .++++++|....+   ..+++++++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++.+|++-+.....-
T Consensus       646 ~~nLG~aL~~~G~---~eeAi~~l~~AL~l~-P---~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g  718 (987)
T PRK09782        646 QAALGYALWDSGD---IAQSREMLERAHKGL-P---DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP  718 (987)
T ss_pred             HHHHHHHHHHCCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence            5678888888654   468999999999998 7   67899999999999999999999999999999999977764433

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.14  E-value=0.0043  Score=50.22  Aligned_cols=60  Identities=8%  Similarity=0.030  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ..+++..+++.++.+ |   ...+.++.++..+.++|+|++|...++..|+++|++..+...+-
T Consensus        80 ~~~A~~~~~~Al~l~-P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         80 RALARNDFSQALALR-P---DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             HHHHHHHHHHHHHcC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345666677777666 5   45677777777777777777777777777777777776644433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.10  E-value=0.0066  Score=46.24  Aligned_cols=74  Identities=7%  Similarity=0.143  Sum_probs=57.9

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh--------hchHHHHHHHHHHHhcCCCCH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI--------KEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl--------gdY~~A~~~~~~lL~~eP~N~   75 (128)
                      |..|-++....   +..++++.+++.++.. |+.....+.+|.++..+++.        |++++|++.++.+++..|++.
T Consensus        74 ~~la~~~~~~~---~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302        74 LDLAYAYYKSG---DYAEAIAAADRFIRLH-PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHHHC-cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            45555555544   5668999999999887 53234456899999999987        999999999999999999998


Q ss_pred             HHHHHH
Q psy16295         76 QVQHLE   81 (128)
Q Consensus        76 QA~~Lk   81 (128)
                      .+....
T Consensus       150 ~~~~a~  155 (235)
T TIGR03302       150 YAPDAK  155 (235)
T ss_pred             hHHHHH
Confidence            765443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.09  E-value=0.0036  Score=56.97  Aligned_cols=63  Identities=17%  Similarity=0.068  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      ..++++.|+..+..+ |   +..+.+|.+|..+.++++|++|....+.+++.+|+|.+++.|...-+
T Consensus       409 ~~~A~~~l~~al~l~-P---d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~~  471 (765)
T PRK10049        409 PRAAENELKKAEVLE-P---RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARARD  471 (765)
T ss_pred             HHHHHHHHHHHHhhC-C---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            346666666666666 5   45557777777777777777777777777777777777777766654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.07  E-value=0.0082  Score=43.64  Aligned_cols=79  Identities=13%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC---CHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE---NSQVQ   78 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~---N~QA~   78 (128)
                      ..|+.||++=--..   -.++|.+.+.-+..+ .+...+++++-.+|-.+-.+|+|++|...++..++-.|+   +...+
T Consensus         3 ~~~~~A~a~d~~G~---~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    3 ALYELAWAHDSLGR---EEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             hHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            46999999866554   458999999998875 222577889999999999999999999999999999899   77777


Q ss_pred             HHHHHH
Q psy16295         79 HLESIV   84 (128)
Q Consensus        79 ~Lk~~I   84 (128)
                      ....+.
T Consensus        79 ~f~Al~   84 (120)
T PF12688_consen   79 VFLALA   84 (120)
T ss_pred             HHHHHH
Confidence            665554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=97.05  E-value=0.0023  Score=50.45  Aligned_cols=69  Identities=17%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          6 YSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      +++.+.+..   +..+..++|+.+......  ....++++.+|..+.+.|++++|+++++..|+.+|+|+++..
T Consensus       116 ~l~~~~~~~---~~~~~~~~l~~~~~~~~~--~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~  184 (280)
T PF13429_consen  116 ALQLYYRLG---DYDEAEELLEKLEELPAA--PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN  184 (280)
T ss_dssp             --H-HHHTT----HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             HHHHHHHHh---HHHHHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            344445544   445566666665544311  356788889999999999999999999999999999999875

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.03  E-value=0.0065  Score=49.37  Aligned_cols=78  Identities=4%  Similarity=0.015  Sum_probs=63.8

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|-+|.++....   +...++..++.+++.. |+.....|.+|.++..+.++|++++|+++++.+++..|+...+..=++
T Consensus       183 ~y~LG~~y~~~g---~~~~A~~~f~~vv~~y-P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~  258 (263)
T PRK10803        183 NYWLGQLNYNKG---KKDDAAYYFASVVKNY-PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQK  258 (263)
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHHC-CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence            466677776654   5558999999998775 544578999999999999999999999999999999999998776554


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus       259 rL  260 (263)
T PRK10803        259 RL  260 (263)
T ss_pred             HH
Confidence            43

>PRK12370 invasion protein regulator; Provisional

Probab=97.02  E-value=0.0048  Score=54.10  Aligned_cols=57  Identities=14%  Similarity=0.166  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      +..+++..+++.++.+ |   ...+.+|++|..+...|+|++|+..++..++.+|++..+.
T Consensus       353 ~~~~A~~~~~~Al~l~-P---~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~  409 (553)
T PRK12370        353 EYIVGSLLFKQANLLS-P---ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAG  409 (553)
T ss_pred             CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhH
Confidence            4567899999988888 6   5778899999999999999999999999999999987653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.01  E-value=0.0045  Score=47.42  Aligned_cols=68  Identities=15%  Similarity=0.201  Sum_probs=57.4

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      +.||.-|-...   +...+..+++-++.-+ |   ...+++|-|+..+-.+|+|++|+.++...+.++|+|+.+-
T Consensus        39 Y~~A~~ly~~G---~l~~A~~~f~~L~~~D-p---~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         39 YRYAMQLMEVK---EFAGAARLFQLLTIYD-A---WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            45666666655   4557888999999888 6   7899999999999999999999999999999999998753

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.99  E-value=0.012  Score=43.18  Aligned_cols=79  Identities=15%  Similarity=0.119  Sum_probs=57.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.+.++....   +..+++..++..+... |+.......++-+|+.+.+.|+|++|+.+++..|+++|++..+......
T Consensus        39 ~~~g~~~~~~g---~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         39 YRDGMSAQSEG---EYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            34444444333   3558888888887665 3212345689999999999999999999999999999999876555444


Q ss_pred             HHH
Q psy16295         84 VKK   86 (128)
Q Consensus        84 Ie~   86 (128)
                      |..
T Consensus       115 i~~  117 (168)
T CHL00033        115 ICH  117 (168)
T ss_pred             HHH
Confidence            444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.99  E-value=0.0055  Score=52.72  Aligned_cols=69  Identities=14%  Similarity=0.083  Sum_probs=47.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      .+++|.+.+..+    .+++++++..+... |   ...+.++.++..++++|++++|..+++.+++..|+|+++...
T Consensus       808 ~~l~~~~~~~~~----~~A~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  876 (899)
T TIGR02917       808 NNLAWLYLELKD----PRALEYAEKALKLA-P---NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYH  876 (899)
T ss_pred             HHHHHHHHhcCc----HHHHHHHHHHHhhC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHH
Confidence            456666666554    23777777777765 4   456677777777777777777777777777777777665443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.93  E-value=0.0071  Score=52.04  Aligned_cols=70  Identities=13%  Similarity=0.134  Sum_probs=49.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      .+..|+.+....   +..++++++++.+..+ |   ...+.+++++..+++.|+|++|..+++.+++.+|+|.++..
T Consensus       162 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~  231 (899)
T TIGR02917       162 KLGLAQLALAEN---RFDEARALIDEVLTAD-P---GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLL  231 (899)
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            345566665544   4456777777777766 5   45677788888888888888888888888888887776543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK12370 invasion protein regulator; Provisional

Probab=96.89  E-value=0.0086  Score=52.51  Aligned_cols=65  Identities=9%  Similarity=-0.040  Sum_probs=57.5

Q ss_pred             ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295         15 FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus        15 ~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ...+..+++..++..++-+ |   ...+.+..+|..+...|+|++|..+++..|+.+|+|.++....-.
T Consensus       316 ~~~~~~~A~~~~~~Al~ld-P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  380 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELD-H---NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW  380 (553)
T ss_pred             cchHHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            4567889999999999998 7   578899999999999999999999999999999999998655433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.86  E-value=0.0017  Score=37.19  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHH--hcCCCC
Q psy16295         43 YLYYLAIGNARIKEYTKSLKYCRAFL--AIESEN   74 (128)
Q Consensus        43 ~LYyLAvg~yklgdY~~A~~~~~~lL--~~eP~N   74 (128)
                      ++..||-.|.++|+|++|..++++.|  ..+|++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            47789999999999999999999955  555554

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=96.83  E-value=0.0053  Score=51.64  Aligned_cols=66  Identities=12%  Similarity=0.025  Sum_probs=57.9

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKK   86 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~   86 (128)
                      ++..+.++.+++.++.+ |   +..+.++.+|-.+++.++|++|+++.+.+++.+|++.....|-.+-+.
T Consensus       308 ~~~~~al~~~e~~lk~~-P---~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~  373 (398)
T PRK10747        308 NNPEQLEKVLRQQIKQH-G---DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDR  373 (398)
T ss_pred             CChHHHHHHHHHHHhhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            45667899999999998 6   688999999999999999999999999999999999987777666653

>KOG0543|consensus

Probab=96.81  E-value=0.01  Score=51.38  Aligned_cols=81  Identities=15%  Similarity=0.229  Sum_probs=66.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH----
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ----   78 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~----   78 (128)
                      -.|.|.|.++...+.   .+|......+.-+ |   .+.-.||=-+-++.-+++|+.|+..++.+++++|+|.-++    
T Consensus       260 ~lNlA~c~lKl~~~~---~Ai~~c~kvLe~~-~---~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~  332 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYK---EAIESCNKVLELD-P---NNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI  332 (397)
T ss_pred             hhHHHHHHHhhhhHH---HHHHHHHHHHhcC-C---CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            358888999887555   8899999999888 5   6899999999999999999999999999999999997665    


Q ss_pred             HHHHHHHHHHhh
Q psy16295         79 HLESIVKKRMET   90 (128)
Q Consensus        79 ~Lk~~Ie~~i~k   90 (128)
                      .|++.|.+.-.+
T Consensus       333 ~l~~k~~~~~~k  344 (397)
T KOG0543|consen  333 KLKQKIREYEEK  344 (397)
T ss_pred             HHHHHHHHHHHH
Confidence            455555444444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.79  E-value=0.0031  Score=47.63  Aligned_cols=71  Identities=13%  Similarity=0.129  Sum_probs=56.4

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      |+=|....++.   +..++|+.|+.|-..- |-..-....-.-|+-+||+.++|++|+..+++++++.|.++++-
T Consensus        14 y~~a~~~l~~~---~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd   84 (142)
T PF13512_consen   14 YQEAQEALQKG---NYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD   84 (142)
T ss_pred             HHHHHHHHHhC---CHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence            34455555554   4567899999988875 43346677888999999999999999999999999999998753

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.78  E-value=0.011  Score=53.12  Aligned_cols=78  Identities=9%  Similarity=0.019  Sum_probs=57.6

Q ss_pred             HHHHHHHHhccCChhh-HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCAD-IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d-~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      .+++|..+....+.++ ..+++..++..+..+ |   ...+.+..+|..+.++|+|++|+.+++.+++.+|+|.++....
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P---~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~L  324 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S---DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMY  324 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3556666666655443 235788888888877 6   4677888888888888888888888888888888888776654


Q ss_pred             HHH
Q psy16295         82 SIV   84 (128)
Q Consensus        82 ~~I   84 (128)
                      ..+
T Consensus       325 a~~  327 (656)
T PRK15174        325 ARA  327 (656)
T ss_pred             HHH
Confidence            443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.63  E-value=0.0088  Score=47.10  Aligned_cols=81  Identities=21%  Similarity=0.240  Sum_probs=59.3

Q ss_pred             HHHHHHHhcc-------CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc-----------hHHHHHHHH
Q psy16295          4 FNYSFCLVRS-------EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE-----------YTKSLKYCR   65 (128)
Q Consensus         4 F~YAwaLv~S-------~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd-----------Y~~A~~~~~   65 (128)
                      .+.+.+|...       ..+.-++++|+=|++-++-+ |   ...|.+|.++.+|+-++.           |++|..|.+
T Consensus        29 ~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P---~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fq  104 (186)
T PF06552_consen   29 TNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-P---NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQ  104 (186)
T ss_dssp             HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-C---chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence            3445555544       23466788999999999999 7   789999999999998876           899999999


Q ss_pred             HHHhcCCCCHH----------HHHHHHHHHHHH
Q psy16295         66 AFLAIESENSQ----------VQHLESIVKKRM   88 (128)
Q Consensus        66 ~lL~~eP~N~Q----------A~~Lk~~Ie~~i   88 (128)
                      ...+.||+|.-          |-.|+..|.+.+
T Consensus       105 kAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~  137 (186)
T PF06552_consen  105 KAVDEDPNNELYRKSLEMAAKAPELHMEIHKQG  137 (186)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred             HHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999964          455666665553

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.60  E-value=0.0049  Score=50.59  Aligned_cols=63  Identities=16%  Similarity=0.140  Sum_probs=55.3

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      ..+..++++-++.+.+.. |-+.-.+..+.-++.+|||.++|+.|+.++|+.++.-|.++.+-=
T Consensus        47 ~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          47 KGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             cCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            346678999999999886 655678999999999999999999999999999999999987643

>PRK11189 lipoprotein NlpI; Provisional

Probab=96.56  E-value=0.026  Score=45.70  Aligned_cols=56  Identities=7%  Similarity=0.010  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      .+..++++.++..++-+ |   ...+.++.+++.++..|+|++|.+.++..++.+|+|+.
T Consensus       112 g~~~~A~~~~~~Al~l~-P---~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        112 GNFDAAYEAFDSVLELD-P---TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            35568899999999888 6   56889999999999999999999999999999999974

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=96.52  E-value=0.02  Score=52.25  Aligned_cols=71  Identities=11%  Similarity=-0.091  Sum_probs=59.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      +.+|..+..+   .+..+++++|++++... |   ...+.++.+|..+.+.|++++|++.++.+|+.+|+|.++.--.
T Consensus       363 ~~~a~~l~~~---g~~~eA~~~l~~al~~~-P---~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~  433 (765)
T PRK10049        363 SLLSQVAKYS---NDLPQAEMRARELAYNA-P---GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ  433 (765)
T ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence            4456666655   35568999999999998 7   4589999999999999999999999999999999996654433

>TIGR00540 hemY_coli hemY protein

Probab=96.52  E-value=0.012  Score=49.59  Aligned_cols=66  Identities=14%  Similarity=-0.005  Sum_probs=55.2

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchH--HHHHHHHHHHhhhhchHHHHHHHH--HHHhcCCCCHHHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKR--DYLYYLAIGNARIKEYTKSLKYCR--AFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~r--d~LYyLAvg~yklgdY~~A~~~~~--~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      +++....++.++.-++.+ |   +..  ..+..++--+++.|+|++|++|.+  ..++.+|++.....|-++.+
T Consensus       312 ~~~~~~~~~~~e~~lk~~-p---~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~  381 (409)
T TIGR00540       312 PEDNEKLEKLIEKQAKNV-D---DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD  381 (409)
T ss_pred             CCChHHHHHHHHHHHHhC-C---CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence            466677888999888888 6   456  566688888999999999999999  79999999998888877665

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.50  E-value=0.0062  Score=35.73  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHH--HHHHHhcCCCC
Q psy16295         41 RDYLYYLAIGNARIKEYTKSLKY--CRAFLAIESEN   74 (128)
Q Consensus        41 rd~LYyLAvg~yklgdY~~A~~~--~~~lL~~eP~N   74 (128)
                      .|++|-+|...+..|+|++|+++  ..-+...+|.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            37899999999999999999999  55888888876

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.45  E-value=0.034  Score=44.92  Aligned_cols=52  Identities=10%  Similarity=0.052  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      ..+++..+++.++.+ |   ...+.++.++..+.+.|++++|.++++.+++.+|++
T Consensus       196 ~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        196 LDAARALLKKALAAD-P---QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HHHHHHHHHHHHhHC-c---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            344555555555444 3   234455555555555555555555555555555544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.42  E-value=0.021  Score=42.28  Aligned_cols=66  Identities=12%  Similarity=0.236  Sum_probs=54.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc--------------hHHHHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE--------------YTKSLKYCRAFL   68 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd--------------Y~~A~~~~~~lL   68 (128)
                      .+++|.++.+..   +..+++..+++.++.. |   ...+.++.++..+..+|+              |++|+++++..+
T Consensus        75 ~~~la~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~  147 (172)
T PRK02603         75 LYNMGIIYASNG---EHDKALEYYHQALELN-P---KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI  147 (172)
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence            355666666654   4567899999999887 6   568889999999999988              789999999999


Q ss_pred             hcCCCCH
Q psy16295         69 AIESENS   75 (128)
Q Consensus        69 ~~eP~N~   75 (128)
                      +.+|+|-
T Consensus       148 ~~~p~~~  154 (172)
T PRK02603        148 RLAPNNY  154 (172)
T ss_pred             hhCchhH
Confidence            9999994

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.42  E-value=0.025  Score=49.79  Aligned_cols=59  Identities=8%  Similarity=-0.059  Sum_probs=41.1

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      +..+++..++..+..+ |   ...+.++.+|..++++|+|++|+.+++..++..|++..+...
T Consensus       414 ~~~~A~~~~~kal~l~-P---~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~  472 (615)
T TIGR00990       414 EFAQAGKDYQKSIDLD-P---DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNY  472 (615)
T ss_pred             CHHHHHHHHHHHHHcC-c---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            4456777777777776 5   456667777777777777777777777777777777655433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.37  E-value=0.031  Score=50.33  Aligned_cols=70  Identities=17%  Similarity=0.107  Sum_probs=58.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      .+++|+.+.+..   +..+++..+++.+..+ |   ...+.++.++..+.++|+|++|+..++.+++.+|++..+..
T Consensus       287 ~~~lg~~l~~~g---~~~eA~~~l~~al~l~-P---~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~  356 (656)
T PRK15174        287 VTLYADALIRTG---QNEKAIPLLQQSLATH-P---DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR  356 (656)
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence            467788887765   4457899999999887 6   56788999999999999999999999999999999865443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.34  E-value=0.025  Score=50.11  Aligned_cols=82  Identities=13%  Similarity=0.082  Sum_probs=74.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      +.+||.+|++-.+++   ++|.+|....+++ |   ...+-|+|||-+|-++|+-.+|....-..+...-...||+....
T Consensus       377 ~~~~a~all~~g~~~---eai~~L~~~~~~~-p---~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~  449 (484)
T COG4783         377 QLNLAQALLKGGKPQ---EAIRILNRYLFND-P---EDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLM  449 (484)
T ss_pred             HHHHHHHHHhcCChH---HHHHHHHHHhhcC-C---CCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            579999999999998   8999999999999 6   68999999999999999999999999999999999999998888


Q ss_pred             HHHHHHhhh
Q psy16295         83 IVKKRMETE   91 (128)
Q Consensus        83 ~Ie~~i~kd   91 (128)
                      .-.++++.+
T Consensus       450 ~A~~~~~~~  458 (484)
T COG4783         450 RASQQVKLG  458 (484)
T ss_pred             HHHHhccCC
Confidence            877777553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.31  E-value=0.012  Score=37.66  Aligned_cols=65  Identities=17%  Similarity=0.155  Sum_probs=44.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhc---cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKT---ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~---~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      -+++|.++.+..+   ..++++.+++.+.-   ..++....-.+++-+|..++++|+|++|+++.+..+++
T Consensus         8 ~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    8 YNNLARVYRELGR---YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHTT----HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4677777776543   34555555554422   10100245789999999999999999999999998875

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.28  E-value=0.008  Score=37.88  Aligned_cols=43  Identities=7%  Similarity=0.108  Sum_probs=37.4

Q ss_pred             HHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295         48 AIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET   90 (128)
Q Consensus        48 Avg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k   90 (128)
                      +-.|.+.++|++|+++++.+++++|++......+-.+.-+..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~   44 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR   44 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc
Confidence            4568899999999999999999999999999888887766543

>KOG1126|consensus

Probab=96.15  E-value=0.012  Score=53.51  Aligned_cols=78  Identities=14%  Similarity=0.180  Sum_probs=66.0

Q ss_pred             HHHHHHHHhccC--ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          3 QFNYSFCLVRSE--FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         3 ~F~YAwaLv~S~--~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      .|.||++|....  -.++..++..-++.-++-+ |   +.-..||-|++.|.|++.|+.|.-+.+..+++.|.|.+-.-=
T Consensus       453 ~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~---rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~  528 (638)
T KOG1126|consen  453 RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P---RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCH  528 (638)
T ss_pred             ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c---hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhh
Confidence            489999999864  3566778888888888888 6   789999999999999999999999999999999999986543


Q ss_pred             HHHH
Q psy16295         81 ESIV   84 (128)
Q Consensus        81 k~~I   84 (128)
                      --.+
T Consensus       529 ~g~~  532 (638)
T KOG1126|consen  529 IGRI  532 (638)
T ss_pred             hhHH
Confidence            3333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.13  E-value=0.027  Score=51.74  Aligned_cols=58  Identities=10%  Similarity=0.126  Sum_probs=29.9

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ++..+|+.++.-. |   +.-..+..+|....+++.+++|+..++++|+.+|+|..++.++.
T Consensus       104 ea~~~l~~~~~~~-P---d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a  161 (694)
T PRK15179        104 EGLAVWRGIHQRF-P---DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA  161 (694)
T ss_pred             HHHHHHHHHHhhC-C---CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            3445555555554 4   34455555555555555555555555555555555555544443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=96.12  E-value=0.016  Score=35.51  Aligned_cols=40  Identities=13%  Similarity=0.160  Sum_probs=33.2

Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         45 YYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        45 YyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      |-||-+|.++||++.||..++.++ -+++.+|-..=+++++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl-~~~~~~q~~eA~~LL~   42 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI-EEGDEAQRQEARALLA   42 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH-HcCCHHHHHHHHHHHh
Confidence            568999999999999999999999 4777777666555544

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=96.11  E-value=0.018  Score=54.76  Aligned_cols=57  Identities=14%  Similarity=0.163  Sum_probs=51.5

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      .+..+++..+++.++.+ |   ...+.++.|+..++++|+|++|+.+++.+++.+|++...
T Consensus       283 g~~~~A~~~l~~aL~~~-P---~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~  339 (1157)
T PRK11447        283 GQGGKAIPELQQAVRAN-P---KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR  339 (1157)
T ss_pred             CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence            45668999999999988 6   568999999999999999999999999999999998754

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.10  E-value=0.06  Score=41.28  Aligned_cols=81  Identities=12%  Similarity=0.030  Sum_probs=69.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|=|..++++.. ..+..++|+.....+.-+ |   +..+..+++|+++.++|+-++|++..+..+..--+++|=..|++
T Consensus        70 ~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~-~---ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~  144 (157)
T PRK15363         70 DYWFRLGECCQA-QKHWGEAIYAYGRAAQIK-I---DAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQ  144 (157)
T ss_pred             HHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC-C---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHH
Confidence            455777788776 778899999999988888 6   67899999999999999999999999999998888888888888


Q ss_pred             HHHHHH
Q psy16295         83 IVKKRM   88 (128)
Q Consensus        83 ~Ie~~i   88 (128)
                      ..+.-.
T Consensus       145 ~A~~~L  150 (157)
T PRK15363        145 RAEKML  150 (157)
T ss_pred             HHHHHH
Confidence            776543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=96.07  E-value=0.032  Score=53.04  Aligned_cols=76  Identities=11%  Similarity=0.043  Sum_probs=62.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      |.|..+..... +.|..++++.|+..++.+ |   ...+..+.||-.|.++|++++|+.+++..++.+|+|.....+...
T Consensus        46 ~~f~~a~~~~~-~Gd~~~A~~~l~~Al~~d-P---~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~  120 (987)
T PRK09782         46 PRLDKALKAQK-NNDEATAIREFEYIHQQV-P---DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAA  120 (987)
T ss_pred             HHHHHHHHHHh-CCCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            45566665554 455569999999999999 7   348888999999999999999999999999999999888776555


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      |
T Consensus       121 i  121 (987)
T PRK09782        121 I  121 (987)
T ss_pred             h
Confidence            5

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=96.07  E-value=0.044  Score=43.84  Aligned_cols=74  Identities=8%  Similarity=-0.027  Sum_probs=57.2

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      .-+..|..+.--.++.+-.++.....+....+ .   ..+++.+..|+.++..||+++|..+++.+|+..|+|..+..
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAAR-A---TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccC-C---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            34556666655566666556666655555555 2   57999999999999999999999999999999999997755

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=96.02  E-value=0.031  Score=46.61  Aligned_cols=62  Identities=11%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      .+.+++++..+..+ |   ..-..+++.+....++|+|++|+.+++.+|+.+|.|..|-.-+..+-
T Consensus       125 ~~el~~~~kal~~d-p---kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl  186 (320)
T PLN02789        125 NKELEFTRKILSLD-A---KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVI  186 (320)
T ss_pred             HHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHH
Confidence            45688888888888 5   78999999999999999999999999999999999988776665553

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.035  Score=46.33  Aligned_cols=67  Identities=12%  Similarity=0.050  Sum_probs=59.8

Q ss_pred             cCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295         13 SEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus        13 S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      -.++++..+-|.-|+.-+..+ |   .+.+-|..|+=.|.++++++.|...+...++++|+|++....--.
T Consensus       132 ~~~~~~~~~l~a~Le~~L~~n-P---~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~ae  198 (287)
T COG4235         132 PPAEQEMEALIARLETHLQQN-P---GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAE  198 (287)
T ss_pred             CCCcccHHHHHHHHHHHHHhC-C---CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            356677888999999999999 7   789999999999999999999999999999999999998765433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=95.90  E-value=0.059  Score=49.50  Aligned_cols=69  Identities=12%  Similarity=-0.029  Sum_probs=56.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ..+||-.|.+-   +...++....+.++..+ |   .+.+.++.+|...-++|+|++|..+++.+|.-.|++.++.
T Consensus       123 ~~~~a~~L~~~---~~~eeA~~~~~~~l~~~-p---~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~  191 (694)
T PRK15179        123 FILMLRGVKRQ---QGIEAGRAEIELYFSGG-S---SSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGY  191 (694)
T ss_pred             HHHHHHHHHHh---ccHHHHHHHHHHHhhcC-C---CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHH
Confidence            45677777664   45667888888888888 6   6899999999999999999999999999999888777664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.89  E-value=0.016  Score=32.55  Aligned_cols=29  Identities=24%  Similarity=0.211  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      +++.-||..+..+|+|++|+.+++..+++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            57889999999999999999999988875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.88  E-value=0.082  Score=38.75  Aligned_cols=68  Identities=10%  Similarity=0.064  Sum_probs=51.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHh-------hhhchH-------HHHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNA-------RIKEYT-------KSLKYCRAFL   68 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~y-------klgdY~-------~A~~~~~~lL   68 (128)
                      -+++|.++.+..+.   .+++..++..++.+ |   ...+.++.++..+.       ++|+|+       +|+.+++..+
T Consensus        75 ~~~lg~~~~~~g~~---~eA~~~~~~Al~~~-~---~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~  147 (168)
T CHL00033         75 LYNIGLIHTSNGEH---TKALEYYFQALERN-P---FLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI  147 (168)
T ss_pred             HHHHHHHHHHcCCH---HHHHHHHHHHHHhC-c---CcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence            45666666665544   57999999988887 5   45788999999999       777766       6666677899


Q ss_pred             hcCCCCHHH
Q psy16295         69 AIESENSQV   77 (128)
Q Consensus        69 ~~eP~N~QA   77 (128)
                      ..+|++.+.
T Consensus       148 ~~~p~~~~~  156 (168)
T CHL00033        148 ALAPGNYIE  156 (168)
T ss_pred             HhCcccHHH
Confidence            999988754

>PLN02789 farnesyltranstransferase

Probab=95.81  E-value=0.077  Score=44.24  Aligned_cols=80  Identities=9%  Similarity=0.159  Sum_probs=62.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ++|-.++..+...  -.+++.+.++.+.-+ |   ..-..++|.+....+++ +|++++.+++.+++.+|.|.|+=.=+.
T Consensus        40 ~~~~ra~l~~~e~--serAL~lt~~aI~ln-P---~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~  113 (320)
T PLN02789         40 MDYFRAVYASDER--SPRALDLTADVIRLN-P---GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR  113 (320)
T ss_pred             HHHHHHHHHcCCC--CHHHHHHHHHHHHHC-c---hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence            4455556555443  348999999999888 6   56788899999989998 689999999999999999999877666


Q ss_pred             HHHHHHh
Q psy16295         83 IVKKRME   89 (128)
Q Consensus        83 ~Ie~~i~   89 (128)
                      .+-.++.
T Consensus       114 ~~l~~l~  120 (320)
T PLN02789        114 WLAEKLG  120 (320)
T ss_pred             HHHHHcC
Confidence            5555554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=95.75  E-value=0.038  Score=52.54  Aligned_cols=61  Identities=8%  Similarity=-0.006  Sum_probs=54.2

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      ..+..++++.+++.++.+ |   ...+.+|.+|..++++|+|++|+..++.+++.+|+|.++.-.
T Consensus       474 ~g~~~eA~~~~~~Al~~~-P---~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a  534 (1157)
T PRK11447        474 QGKWAQAAELQRQRLALD-P---GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYA  534 (1157)
T ss_pred             CCCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            356678999999999998 7   567899999999999999999999999999999999876543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=95.68  E-value=0.036  Score=44.79  Aligned_cols=32  Identities=13%  Similarity=0.071  Sum_probs=15.4

Q ss_pred             HHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295         47 LAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus        47 LAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ++..+++.|++++|.++++.+++.+|++.++.
T Consensus       186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  217 (389)
T PRK11788        186 LAQQALARGDLDAARALLKKALAADPQCVRAS  217 (389)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHH
Confidence            34444445555555555555555555444433

>KOG2002|consensus

Probab=95.61  E-value=0.059  Score=51.29  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=67.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ..|.|+|++-..   ..+.+|++.+..++.-++  .++++.+-|||=++|+-+.|.+|..+....++.-|.|.+++-=..
T Consensus       683 ~lNlah~~~e~~---qy~~AIqmYe~~lkkf~~--~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  683 WLNLAHCYVEQG---QYRLAIQMYENCLKKFYK--KNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             eeeHHHHHHHHH---HHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence            357888888654   677999999999999776  689999999999999999999999999999999999999664433


Q ss_pred             HHHHH
Q psy16295         83 IVKKR   87 (128)
Q Consensus        83 ~Ie~~   87 (128)
                      ++-.+
T Consensus       758 ~v~kk  762 (1018)
T KOG2002|consen  758 LVLKK  762 (1018)
T ss_pred             HHHHH
Confidence            33333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.52  E-value=0.032  Score=45.77  Aligned_cols=70  Identities=13%  Similarity=0.174  Sum_probs=53.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      +.--||--+.... +.++.+..+++++...- +   ....-+.-+|+++..+|+|++|...++..|+.+|.|+.+
T Consensus       168 qLa~awv~l~~g~-e~~~~A~y~f~El~~~~-~---~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~  237 (290)
T PF04733_consen  168 QLAEAWVNLATGG-EKYQDAFYIFEELSDKF-G---STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT  237 (290)
T ss_dssp             HHHHHHHHHHHTT-TCCCHHHHHHHHHHCCS------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred             HHHHHHHHHHhCc-hhHHHHHHHHHHHHhcc-C---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence            3444665555543 66788999999977664 3   467889999999999999999999999999999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.46  E-value=0.21  Score=38.29  Aligned_cols=81  Identities=11%  Similarity=0.168  Sum_probs=61.8

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc-----------hHHHHHHHHHHHhc
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE-----------YTKSLKYCRAFLAI   70 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd-----------Y~~A~~~~~~lL~~   70 (128)
                      ++|..|++.-+..   +...++..++..++.. |+.....+.+|.++++++++.+           ..+|...++.+++.
T Consensus        44 A~l~la~a~y~~~---~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~  119 (203)
T PF13525_consen   44 AQLMLAYAYYKQG---DYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR  119 (203)
T ss_dssp             HHHHHHHHHHHTT----HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence            4678888888776   4557888888888776 6545778999999999998754           34899999999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy16295         71 ESENSQVQHLESIVKK   86 (128)
Q Consensus        71 eP~N~QA~~Lk~~Ie~   86 (128)
                      -|+.+-+..-++.|..
T Consensus       120 yP~S~y~~~A~~~l~~  135 (203)
T PF13525_consen  120 YPNSEYAEEAKKRLAE  135 (203)
T ss_dssp             -TTSTTHHHHHHHHHH
T ss_pred             CcCchHHHHHHHHHHH
Confidence            9999988777665543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=95.44  E-value=0.038  Score=52.28  Aligned_cols=56  Identities=13%  Similarity=0.057  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      ..|+-+...+.+. +   .+++.||.||.+|-++|++++|...|+.+|+.+|+|..+..=
T Consensus       100 ~~ve~~~~~i~~~-~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn  155 (906)
T PRK14720        100 AIVEHICDKILLY-G---ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKK  155 (906)
T ss_pred             hHHHHHHHHHHhh-h---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHH
Confidence            5666666656555 3   577899999999999999999999999999999999998653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.30  E-value=0.053  Score=47.82  Aligned_cols=39  Identities=8%  Similarity=0.076  Sum_probs=32.9

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      +..+.++-++++++++|+|++|+..++..|+++|++.++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA  111 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA  111 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH
Confidence            567788888888888888888888888888888888766

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.18  E-value=0.048  Score=33.76  Aligned_cols=32  Identities=13%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             hhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295         52 ARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus        52 yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      .+.|+|++|++.++.+++.+|+|..+.-..-.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~   33 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQ   33 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            57899999999999999999999998875433

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=95.15  E-value=0.17  Score=36.42  Aligned_cols=54  Identities=17%  Similarity=0.001  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      ....+.++.+.++. |++.-...-.+.+|-.++..|+|++|...++.++...|++
T Consensus        28 ~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~   81 (145)
T PF09976_consen   28 AKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP   81 (145)
T ss_pred             HHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH
Confidence            33444566666665 4323456777778888888888888888888888877655

>KOG0553|consensus

Probab=95.03  E-value=0.14  Score=43.21  Aligned_cols=67  Identities=9%  Similarity=0.184  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      ...+|+=.+.-+.-+ |   .--..+-=|.++++-+|+|++|.+++...|++||+|.-.++=++..+.+..
T Consensus       131 ~~~AVkDce~Al~iD-p---~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  131 YEDAVKDCESALSID-P---HYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             hHHHHHHHHHHHhcC-h---HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            345666666666666 5   556667778999999999999999999999999999976666666666554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.03  E-value=0.095  Score=46.25  Aligned_cols=62  Identities=16%  Similarity=0.173  Sum_probs=52.5

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHH---HHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRD---YLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd---~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      ..+|++.+|.+-   .+..++|..++.-+..+ |   +..+   .+|.+|.+|.++|++++|+.+++..++.
T Consensus        77 a~~NLG~AL~~l---GryeEAIa~f~rALeL~-P---d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         77 DAVNLGLSLFSK---GRVKDALAQFETALELN-P---NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHc---CCHHHHHHHHHHHHhhC-C---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            457888888775   46668999999999998 7   3444   4999999999999999999999998876

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.00  E-value=0.12  Score=42.62  Aligned_cols=71  Identities=10%  Similarity=0.086  Sum_probs=60.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      -|+-|..+++|.+   ...+..-|.+-++.- |+.....+..|+|+-.+|.+|||+.|-.....+.+--|+++-|
T Consensus       144 ~Y~~A~~~~ksgd---y~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA  214 (262)
T COG1729         144 LYNAALDLYKSGD---YAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA  214 (262)
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence            3788999999987   556888888877775 6556789999999999999999999999999999999988876

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=94.96  E-value=0.12  Score=38.78  Aligned_cols=51  Identities=10%  Similarity=0.124  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295         40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET   90 (128)
Q Consensus        40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k   90 (128)
                      -.|-+.-.|-.++..|||.-|...++.++..||+|.+|+.|+.-.-+++..
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            467778889999999999999999999999999999999999877666543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=94.91  E-value=0.12  Score=41.29  Aligned_cols=51  Identities=2%  Similarity=-0.090  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~   73 (128)
                      ..+++..+++.+... |   .....++.+|..++..|++++|+.+++..++..|.
T Consensus       130 ~~~A~~~~~~al~~~-p---~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~  180 (355)
T cd05804         130 YDRAEEAARRALELN-P---DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC  180 (355)
T ss_pred             HHHHHHHHHHHHhhC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence            445666666666665 4   34555666666666666666666666666666654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=94.83  E-value=0.08  Score=49.51  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=49.5

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      ..+..++|++++++++.+ |   ...+.++.++..+...+++++|+..++.+...+|+|...+.+
T Consensus       115 ~gdyd~Aiely~kaL~~d-P---~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~l  175 (822)
T PRK14574        115 EKRWDQALALWQSSLKKD-P---TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTL  175 (822)
T ss_pred             cCCHHHHHHHHHHHHhhC-C---CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHH
Confidence            345558888999888888 6   457888888888888899999999988888888888777444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=94.80  E-value=0.05  Score=34.76  Aligned_cols=32  Identities=22%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      ..-.+++.+|..+.++|+|++|+.+++..|++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~   34 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDI   34 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45689999999999999999999999998865

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.75  E-value=0.027  Score=32.09  Aligned_cols=32  Identities=9%  Similarity=0.103  Sum_probs=26.4

Q ss_pred             HHHhhccCccccchHHHHHHHHHHHhhhhchHHHHH
Q psy16295         27 EELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLK   62 (128)
Q Consensus        27 ~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~   62 (128)
                      +..++.+ |   ...+.++.||..+++.|++++|++
T Consensus         3 ~kAie~~-P---~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    3 KKAIELN-P---NNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             HHHHHHC-C---CCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3444557 7   789999999999999999999973

>KOG0543|consensus

Probab=94.63  E-value=0.047  Score=47.42  Aligned_cols=39  Identities=23%  Similarity=0.408  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295         40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus        40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      +-=|+--||+++.|+++|.+|+..|+..|.++|+|.-|.
T Consensus       256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL  294 (397)
T KOG0543|consen  256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL  294 (397)
T ss_pred             HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence            455777899999999999999999999999999997653

>KOG1125|consensus

Probab=94.57  E-value=0.16  Score=45.97  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=58.7

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      .=++-|++-.   ++.+++-.||.-++.+ |   ..-|.|-+|++.|....+=..|..+...+|+++|+|.+|..
T Consensus       290 ~eG~~lm~nG---~L~~A~LafEAAVkqd-P---~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLm  357 (579)
T KOG1125|consen  290 KEGCNLMKNG---DLSEAALAFEAAVKQD-P---QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALM  357 (579)
T ss_pred             HHHHHHHhcC---CchHHHHHHHHHHhhC-h---HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHH
Confidence            3344455443   3889999999999999 7   78999999999999999999999999999999999998753

>KOG2076|consensus

Probab=94.40  E-value=0.17  Score=47.75  Aligned_cols=70  Identities=16%  Similarity=0.264  Sum_probs=57.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      ++.|-+|..   ......++.+|..+.... +  .+....||-+|..+--+|+|++|..+++.+|..+|+|--++-
T Consensus       418 ~d~a~al~~---~~~~~~Al~~l~~i~~~~-~--~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri  487 (895)
T KOG2076|consen  418 LDLADALTN---IGKYKEALRLLSPITNRE-G--YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI  487 (895)
T ss_pred             HHHHHHHHh---cccHHHHHHHHHHHhcCc-c--ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence            344555544   445568999999999987 4  466889999999999999999999999999999999987753

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.36  E-value=0.44  Score=32.80  Aligned_cols=59  Identities=15%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             HHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC--HHHHHHHHHH
Q psy16295         22 GILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN--SQVQHLESIV   84 (128)
Q Consensus        22 GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N--~QA~~Lk~~I   84 (128)
                      .|+-|+.-+..+ |   ..-|..|-+|..+...|+|+.|+.-+-.+++.+|++  .+++...-.|
T Consensus         7 ~~~al~~~~a~~-P---~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~   67 (90)
T PF14561_consen    7 DIAALEAALAAN-P---DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDI   67 (90)
T ss_dssp             HHHHHHHHHHHS-T---T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHH
T ss_pred             cHHHHHHHHHcC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHH
Confidence            466677778888 6   577999999999999999999999999999999988  5554443333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.20  E-value=0.17  Score=36.42  Aligned_cols=65  Identities=17%  Similarity=0.056  Sum_probs=47.8

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ..+..++++.|+.++.+. |+...+.-..+.||-.++..|+|++|+..++.. .-+|-.+.+..|+-
T Consensus        61 ~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~G  125 (145)
T PF09976_consen   61 QGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLG  125 (145)
T ss_pred             CCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHH
Confidence            467789999999999987 432455678888999999999999999999772 33333344444433

>KOG1156|consensus

Probab=94.16  E-value=0.24  Score=45.64  Aligned_cols=65  Identities=20%  Similarity=0.233  Sum_probs=49.5

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      +|-+..+--++++ +   .+.=||.-+++-+-.-++|++|.+++...|.+||+|.|-..=..+.+-.|.
T Consensus        59 ea~~~vr~glr~d-~---~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR  123 (700)
T KOG1156|consen   59 EAYELVRLGLRND-L---KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR  123 (700)
T ss_pred             HHHHHHHHHhccC-c---ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            3444444444444 3   677899999999999999999999999999999999997655555554443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=94.12  E-value=0.13  Score=45.86  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=40.0

Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295         43 YLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        43 ~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~   87 (128)
                      ++||||..|-++|+|++|+.|++..+++.|....---+|..|-+.
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh  240 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            679999999999999999999999999999998877777666544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.07  E-value=0.28  Score=38.80  Aligned_cols=72  Identities=14%  Similarity=0.193  Sum_probs=51.3

Q ss_pred             HHHHHHHhccCC----hhhHHHHHHHHHHHhhccCcc--ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          4 FNYSFCLVRSEF----CADIRKGILLLEELFKTETED--IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         4 F~YAwaLv~S~~----~~d~~~GI~LL~~l~~~~~~~--~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+.||..=-..+    ..-.+++.+.+++.+..+..+  ....--.+|++|--++|+|+|++|++++..++..--.+.
T Consensus       122 LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  122 LRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            345665443333    234568889999888775221  123456889999999999999999999999998764444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=93.92  E-value=0.41  Score=40.29  Aligned_cols=65  Identities=11%  Similarity=-0.004  Sum_probs=44.8

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHH-HHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLY-YLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LY-yLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      ..+..++.+.|++..+.+ |   +.+-... ..+--+...|+|+.|+.+.+.+++.+|+|+.+..+...+
T Consensus       131 ~g~~~~A~~~l~~A~~~~-~---~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~  196 (398)
T PRK10747        131 RGDEARANQHLERAAELA-D---NDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQA  196 (398)
T ss_pred             CCCHHHHHHHHHHHHhcC-C---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            344556777777777766 4   2222222 336677888999999999999999999998776665433

>KOG4162|consensus

Probab=93.67  E-value=0.2  Score=46.74  Aligned_cols=65  Identities=15%  Similarity=0.198  Sum_probs=54.2

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          6 YSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .|.+|....++. +...-.+|.+-++-+ |   ..+|.||||+-.+-++||.+.|-.+.+..++.||.||
T Consensus       724 la~~lle~G~~~-la~~~~~L~dalr~d-p---~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  724 LAELLLELGSPR-LAEKRSLLSDALRLD-P---LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHhCCcc-hHHHHHHHHHHHhhC-C---CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            566677766444 233334888999999 7   7899999999999999999999999999999999986

>PRK11906 transcriptional regulator; Provisional

Probab=93.56  E-value=0.55  Score=41.61  Aligned_cols=74  Identities=12%  Similarity=0.063  Sum_probs=53.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      |..+.++.....   ...|+.+|+.-..-+ |   +.-+-+||.|+.++-.|+.++|++.++..|+.+|.-.-+--+|.-
T Consensus       342 ~~~g~~~~~~~~---~~~a~~~f~rA~~L~-P---n~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~  414 (458)
T PRK11906        342 AIMGLITGLSGQ---AKVSHILFEQAKIHS-T---DIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC  414 (458)
T ss_pred             HHHHHHHHhhcc---hhhHHHHHHHHhhcC-C---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence            344444444443   556777777777666 6   577888888888888888888888888888888877777777766


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      |
T Consensus       415 ~  415 (458)
T PRK11906        415 V  415 (458)
T ss_pred             H
Confidence            6

>KOG0548|consensus

Probab=92.85  E-value=0.65  Score=41.86  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=56.4

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET   90 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k   90 (128)
                      ..|.+.+|..+.+-++.+ |   ......--.|.+|.++++|.+|++-|+..++.+|+|.-+-.=|-.+...|++
T Consensus       371 ~gdy~~Av~~YteAIkr~-P---~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~  441 (539)
T KOG0548|consen  371 KGDYPEAVKHYTEAIKRD-P---EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE  441 (539)
T ss_pred             ccCHHHHHHHHHHHHhcC-C---chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            356678999999988888 7   4555666789999999999999999999999999998776555555444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=92.78  E-value=1.8  Score=34.55  Aligned_cols=79  Identities=5%  Similarity=0.079  Sum_probs=61.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh---------------ch---HHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK---------------EY---TKSLKYC   64 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg---------------dY---~~A~~~~   64 (128)
                      .+.+|.+..+..+   ...++..++..++.. |+.....+.+|.++++++.++               |-   .+|.+.+
T Consensus        72 ~l~la~ayy~~~~---y~~A~~~~e~fi~~~-P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~  147 (243)
T PRK10866         72 QLDLIYAYYKNAD---LPLAQAAIDRFIRLN-PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF  147 (243)
T ss_pred             HHHHHHHHHhcCC---HHHHHHHHHHHHHhC-cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence            5778888888765   558999999998887 654567888999999987775               11   4677899


Q ss_pred             HHHHhcCCCCHHHHHHHHHHH
Q psy16295         65 RAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        65 ~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      +.+++.-|+-+=+..-+..+.
T Consensus       148 ~~li~~yP~S~ya~~A~~rl~  168 (243)
T PRK10866        148 SKLVRGYPNSQYTTDATKRLV  168 (243)
T ss_pred             HHHHHHCcCChhHHHHHHHHH
Confidence            999999999887777666443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=92.77  E-value=0.34  Score=40.01  Aligned_cols=56  Identities=7%  Similarity=0.175  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ..+++..++...+-. |   ..-+.+.-+++++-++|+.++|+..+.+.|++.|+++.+.
T Consensus       116 ~~~A~~~~rkA~~l~-p---~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~  171 (257)
T COG5010         116 FGEAVSVLRKAARLA-P---TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIA  171 (257)
T ss_pred             hHHHHHHHHHHhccC-C---CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhh
Confidence            345666666666666 4   3566666677777777777777777777777777666654

>PRK11906 transcriptional regulator; Provisional

Probab=92.54  E-value=1.1  Score=39.68  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=61.1

Q ss_pred             HHHHhccCChhhHHHHHHHHHHHh---hccCccccchHHHHHHHHHHHhhh---------hchHHHHHHHHHHHhcCCCC
Q psy16295          7 SFCLVRSEFCADIRKGILLLEELF---KTETEDIDRKRDYLYYLAIGNARI---------KEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus         7 AwaLv~S~~~~d~~~GI~LL~~l~---~~~~~~~~~~rd~LYyLAvg~ykl---------gdY~~A~~~~~~lL~~eP~N   74 (128)
                      |...++...++++.++..+|+..+   .-+ |   .--.++-.+|.+|.-.         .+-.+|++..+..++++|+|
T Consensus       262 g~~~~~~~t~~~~~~Al~lf~ra~~~~~ld-p---~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D  337 (458)
T PRK11906        262 GKKELYDFTPESIYRAMTIFDRLQNKSDIQ-T---LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD  337 (458)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHHhhcccCC-c---ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            566778889999999999999999   555 5   4566777777777654         46678999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy16295         75 SQVQHLESIVK   85 (128)
Q Consensus        75 ~QA~~Lk~~Ie   85 (128)
                      +||..+.-.+-
T Consensus       338 a~a~~~~g~~~  348 (458)
T PRK11906        338 GKILAIMGLIT  348 (458)
T ss_pred             HHHHHHHHHHH
Confidence            99998877753

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=92.12  E-value=0.25  Score=42.65  Aligned_cols=44  Identities=9%  Similarity=0.126  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295         20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAF   67 (128)
Q Consensus        20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~l   67 (128)
                      ..++++.++...-. |   ..-++||+||..|.++|||++|+-.++.+
T Consensus       251 ~lAL~iAk~av~ls-P---~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  251 ELALEIAKKAVELS-P---SEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHhC-c---hhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            34555555555555 4   46677777777777777777777665543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0553|consensus

Probab=92.06  E-value=0.39  Score=40.51  Aligned_cols=56  Identities=20%  Similarity=0.340  Sum_probs=42.8

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      .+.+++|..-.+-+.-+ |   ..-=|+---|-+|.+||+|+.|.+-|+..|++||.-.-
T Consensus        95 ~~Y~eAv~kY~~AI~l~-P---~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk  150 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELD-P---TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK  150 (304)
T ss_pred             hhHHHHHHHHHHHHhcC-C---CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH
Confidence            45667777777777776 5   33444444799999999999999999999999997543

>KOG3081|consensus

Probab=91.94  E-value=0.77  Score=38.57  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=55.7

Q ss_pred             HHHHHhcc-CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          6 YSFCLVRS-EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         6 YAwaLv~S-~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      +|-+.|+. .....++.+-.+++++.... |   ....-+--.|+.|.-+++|++|...++..|..+|.++.+
T Consensus       175 LA~awv~la~ggek~qdAfyifeE~s~k~-~---~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  175 LAQAWVKLATGGEKIQDAFYIFEELSEKT-P---PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             HHHHHHHHhccchhhhhHHHHHHHHhccc-C---CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            45555554 33455889999999998876 3   478899999999999999999999999999999999543

>TIGR00540 hemY_coli hemY protein

Probab=91.87  E-value=2.5  Score=35.60  Aligned_cols=50  Identities=8%  Similarity=-0.000  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295         20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus        20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~   73 (128)
                      ..+.+.++.+.+.+ |   +..+.++.++..+.+.||+++|++..+.+++..+.
T Consensus       170 ~~Al~~l~~l~~~~-P---~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~  219 (409)
T TIGR00540       170 HAARHGVDKLLEMA-P---RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF  219 (409)
T ss_pred             HHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            35677777777777 6   56678888888888888888888888888876433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=91.76  E-value=1.2  Score=32.16  Aligned_cols=63  Identities=17%  Similarity=0.166  Sum_probs=47.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHh
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA   69 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~   69 (128)
                      .+++|.+|-.-.   ...+++.+|++.+.+. |+.+....-.+++|++.+.+|++++|++-+-..|.
T Consensus        41 ~i~lastlr~LG---~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   41 LIQLASTLRNLG---RYDEALALLEEALEEF-PDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            345666665443   4558999999999885 52234677778999999999999999998877665

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=91.68  E-value=1.7  Score=30.86  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295         41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus        41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      .+++--++-.+...|+|++|.+.++.++..+|-|.++-.
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~  100 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYR  100 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            455555566666666666666666666666666665543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.55  E-value=0.87  Score=37.62  Aligned_cols=79  Identities=10%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      |=+..++-.   ..+...+...+....++- |++..-.|-|+=|++.-.++|+-++|++.++.+.+--|+.+.|+.=+..
T Consensus       182 yWLGe~~y~---qg~y~~Aa~~f~~~~k~~-P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         182 YWLGESLYA---QGDYEDAAYIFARVVKDY-PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             HHHHHHHHh---cccchHHHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            334444443   345567888898888875 6545778999999999999999999999999999999999999887766


Q ss_pred             HHH
Q psy16295         84 VKK   86 (128)
Q Consensus        84 Ie~   86 (128)
                      ++.
T Consensus       258 ~~~  260 (262)
T COG1729         258 LKA  260 (262)
T ss_pred             Hhc
Confidence            643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=91.41  E-value=0.61  Score=33.15  Aligned_cols=50  Identities=12%  Similarity=0.132  Sum_probs=40.7

Q ss_pred             ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q psy16295         15 FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFL   68 (128)
Q Consensus        15 ~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL   68 (128)
                      ...+..+++.+++.++..+ |   ..-+.+..+--++++.|++.+|++.++.+-
T Consensus        74 ~~~~~~~a~~~~~~~l~~d-P---~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   74 EAGDYEEALRLLQRALALD-P---YDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HTT-HHHHHHHHHHHHHHS-T---T-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4567889999999999999 7   678888888999999999999999976653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=91.38  E-value=1.3  Score=34.30  Aligned_cols=64  Identities=11%  Similarity=0.079  Sum_probs=35.0

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .||..+-.+.   +..++..+++-|+.-+ |   ..+||++-||..+=.+++|++|...+....-++|+|+
T Consensus        42 ~~Ay~~y~~G---k~~eA~~~F~~L~~~d-~---~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         42 AHAYEFYNQG---RLDEAETFFRFLCIYD-F---YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHHhC-c---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            4444444443   2334555555555555 3   4466666666666666666666666655555555543

>PRK10941 hypothetical protein; Provisional

Probab=91.32  E-value=1.7  Score=35.73  Aligned_cols=74  Identities=11%  Similarity=0.022  Sum_probs=54.6

Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16295          7 SFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKK   86 (128)
Q Consensus         7 AwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~   86 (128)
                      =+++++..+-..--+.++++-.+.-++ |  ...||    -++.+++++.+..|+.=.+..++.-|+++.+..+|..|+.
T Consensus       188 K~~~~~~~~~~~AL~~~e~ll~l~P~d-p--~e~RD----RGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~  260 (269)
T PRK10941        188 KAALMEEKQMELALRASEALLQFDPED-P--YEIRD----RGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS  260 (269)
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHhCCCC-H--HHHHH----HHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            345555555554444445544444444 4  46677    4788999999999999999999999999999999998875


Q ss_pred             H
Q psy16295         87 R   87 (128)
Q Consensus        87 ~   87 (128)
                      -
T Consensus       261 l  261 (269)
T PRK10941        261 I  261 (269)
T ss_pred             H
Confidence            3

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=91.26  E-value=0.45  Score=39.52  Aligned_cols=72  Identities=14%  Similarity=0.159  Sum_probs=53.2

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295          6 YSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus         6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      ||..+..|.|.   .-..+++.+.+.-- |   +--+-|+=++.-+-|-|+.+.|-+.++..|+++|++++..+||-.+
T Consensus         1 ~a~~~~~~~D~---~aaaely~qal~la-p---~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~kLa~   72 (287)
T COG4976           1 YAYMLAESGDA---EAAAELYNQALELA-P---EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALKLAV   72 (287)
T ss_pred             CcchhcccCCh---HHHHHHHHHHhhcC-c---hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhhHHh
Confidence            34555555544   35667777777666 5   4556666666666777777789999999999999999999998654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.08  E-value=0.7  Score=26.97  Aligned_cols=41  Identities=12%  Similarity=-0.011  Sum_probs=34.1

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAI   49 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAv   49 (128)
                      +.+.+|.++.++.+.+   +++.+++..++.+ |   +..+.++.||.
T Consensus         3 ~~~~la~~~~~~G~~~---~A~~~~~~~l~~~-P---~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRLGQPD---EAERLLRRALALD-P---DDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHcCCHH---HHHHHHHHHHHHC-c---CCHHHHHHhhh
Confidence            3578899999988766   8999999999999 7   57888887763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.07  E-value=1.7  Score=35.66  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhch-HHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEY-TKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY-~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ...|+|.++-.   +..++.++|++-+..+ |   ...|.+.-+++...-+|+- +.+.+|..++-+..|+++-...+.+
T Consensus       205 ng~A~~~l~~~---~~~eAe~~L~~al~~~-~---~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~  277 (290)
T PF04733_consen  205 NGLAVCHLQLG---HYEEAEELLEEALEKD-P---NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAE  277 (290)
T ss_dssp             HHHHHHHHHCT----HHHHHHHHHHHCCC--C---CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHH
T ss_pred             HHHHHHHHHhC---CHHHHHHHHHHHHHhc-c---CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHH
Confidence            45677777765   4557888999988887 5   6899999999999999988 7899999999999999999998875


Q ss_pred             H
Q psy16295         83 I   83 (128)
Q Consensus        83 ~   83 (128)
                      .
T Consensus       278 ~  278 (290)
T PF04733_consen  278 K  278 (290)
T ss_dssp             H
T ss_pred             H
Confidence            4

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=90.90  E-value=0.95  Score=37.23  Aligned_cols=68  Identities=13%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhc-cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKT-ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~-~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ||.|=|..-..++   ++...|+.-+.+ .++   .+.|-+=-+.++.+|.|+.+.|+.+.++.|+++|+|+-+.
T Consensus       108 NYG~FLC~qg~~~---eA~q~F~~Al~~P~Y~---~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~  176 (250)
T COG3063         108 NYGAFLCAQGRPE---EAMQQFERALADPAYG---EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL  176 (250)
T ss_pred             hhhHHHHhCCChH---HHHHHHHHHHhCCCCC---CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH
Confidence            6778777666443   677778776666 444   6788888899999999999999999999999999988653

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=90.39  E-value=0.79  Score=40.91  Aligned_cols=57  Identities=18%  Similarity=0.060  Sum_probs=48.8

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      ..+.+++++.|++.-+.- .   ++.-.+=..|--+.++|++++|...|..||+..|+|..
T Consensus        17 ~g~~~~AL~~L~~~~~~I-~---Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~   73 (517)
T PF12569_consen   17 AGDYEEALEHLEKNEKQI-L---DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD   73 (517)
T ss_pred             CCCHHHHHHHHHhhhhhC-C---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Confidence            356779999998866555 3   57788888899999999999999999999999999984

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.92  E-value=0.99  Score=37.14  Aligned_cols=47  Identities=13%  Similarity=0.092  Sum_probs=33.4

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      ...+..-.||++|...||+..|+.-++..|++||++.=+...+..+-
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Y   79 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYY   79 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            45666667777777777777777777777777777777766666654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.66  E-value=0.43  Score=25.31  Aligned_cols=23  Identities=13%  Similarity=-0.068  Sum_probs=20.9

Q ss_pred             HHHHHHHHHhhhhchHHHHHHHH
Q psy16295         43 YLYYLAIGNARIKEYTKSLKYCR   65 (128)
Q Consensus        43 ~LYyLAvg~yklgdY~~A~~~~~   65 (128)
                      ..+.||..+..+||+++|++.++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            57899999999999999998876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=89.14  E-value=3.5  Score=36.67  Aligned_cols=29  Identities=28%  Similarity=0.305  Sum_probs=22.2

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhccCc
Q psy16295          6 YSFCLVRSEFCADIRKGILLLEELFKTETE   35 (128)
Q Consensus         6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~   35 (128)
                      -|+.+++..++++..+++++|++.++.+ |
T Consensus       345 rg~~~~~~~~~~~~~~A~~lle~Ai~ld-P  373 (517)
T PRK10153        345 QAHHYLNSGDAKSLNKASDLLEEILKSE-P  373 (517)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHhC-C
Confidence            4566677777888888888888888877 6

>KOG1840|consensus

Probab=88.64  E-value=0.92  Score=40.58  Aligned_cols=49  Identities=20%  Similarity=0.327  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295         20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE   71 (128)
Q Consensus        20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e   71 (128)
                      .++..++++.+..+.|   ..---+.=||+.|++.|+|.+|..||+..+++-
T Consensus       265 ~~AL~i~e~~~G~~h~---~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  265 EEALTIREEVFGEDHP---AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHHHHhcCCCCH---HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            4566666666666633   677888889999999999999999999998764

>KOG1174|consensus

Probab=88.54  E-value=1.8  Score=38.82  Aligned_cols=65  Identities=17%  Similarity=0.092  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      ..||.|||.-+.+- ||    -...-.|+--..-..+|.+|..++...|+++|+|.-+..=.+..|+.+.
T Consensus       455 ~D~i~LLe~~L~~~-~D----~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  455 KDIIKLLEKHLIIF-PD----VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             chHHHHHHHHHhhc-cc----cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            45888888888776 32    2334455656666788999999999999999999988877777776654

>KOG2581|consensus

Probab=88.43  E-value=1.6  Score=38.80  Aligned_cols=48  Identities=25%  Similarity=0.310  Sum_probs=41.3

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~   87 (128)
                      ..-.|+||++.-..=+.||+.|++|.-+.++.-|+ .-|.--++.+.+-
T Consensus       245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~k~  292 (493)
T KOG2581|consen  245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVNKL  292 (493)
T ss_pred             HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHHHH
Confidence            55789999999999999999999999999999998 6677666666543

>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.27  E-value=0.64  Score=31.49  Aligned_cols=26  Identities=23%  Similarity=0.193  Sum_probs=17.7

Q ss_pred             HHHHHHHHH-HHHH-hhHHHhhhhhhcc
Q psy16295         95 GMALAGGAV-LAQG-QGTMEMSCKSYKN  120 (128)
Q Consensus        95 G~~i~gga~-~~~g-~~~~~~~~~~~~~  120 (128)
                      +++|++.++ +++| ++|+++|||-++.
T Consensus         4 ~lail~ivl~ll~G~~~G~fiark~~~k   31 (71)
T COG3763           4 WLAILLIVLALLAGLIGGFFIARKQMKK   31 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555444 6666 5699999998864

>KOG4162|consensus

Probab=88.11  E-value=2  Score=40.42  Aligned_cols=66  Identities=27%  Similarity=0.383  Sum_probs=54.1

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN-SQVQHLESIVK   85 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N-~QA~~Lk~~Ie   85 (128)
                      ..-.++++..|++-+.-+ |   ...+.+||+|+=|..+++-+.|+.++...|.+.|.. .-+..|..++-
T Consensus       457 ~~~h~kslqale~av~~d-~---~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvl  523 (799)
T KOG4162|consen  457 DALHKKSLQALEEAVQFD-P---TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVL  523 (799)
T ss_pred             HHHHHHHHHHHHHHHhcC-C---CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            345678999999999998 5   567999999999999999999999999999996554 44555555554

>KOG3785|consensus

Probab=88.05  E-value=1.2  Score=39.33  Aligned_cols=54  Identities=15%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP   72 (128)
                      .+|..-+|.+|+--...+.   +.-.+.=-++|..+|.+|||++|+.-++.+.+.+-
T Consensus        35 ~rDytGAislLefk~~~~~---EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~   88 (557)
T KOG3785|consen   35 NRDYTGAISLLEFKLNLDR---EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD   88 (557)
T ss_pred             cccchhHHHHHHHhhccch---hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC
Confidence            4677789999987665552   33345567899999999999999999888877553

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.51  E-value=3.8  Score=33.92  Aligned_cols=80  Identities=9%  Similarity=0.070  Sum_probs=59.6

Q ss_pred             HHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH-HHHHHHH
Q psy16295          8 FCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH-LESIVKK   86 (128)
Q Consensus         8 waLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~-Lk~~Ie~   86 (128)
                      -.|+++.   .++++|.+.++-+|.. |   ...+|..+|=--++-.|+|++|..-++.+=+++|+..|..+ -+.+|..
T Consensus         9 seLL~~~---sL~dai~~a~~qVkak-P---tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           9 SELLDDN---SLQDAIGLARDQVKAK-P---TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHhc---cHHHHHHHHHHHHhcC-C---ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3566655   3568999999999998 6   34444444444467789999999999999999999876554 5778887


Q ss_pred             HHhhhHHH
Q psy16295         87 RMETEGLK   94 (128)
Q Consensus        87 ~i~kdGli   94 (128)
                      .+.|+-+.
T Consensus        82 ea~R~evf   89 (273)
T COG4455          82 EAARNEVF   89 (273)
T ss_pred             HHHHHHHh
Confidence            77776544

>PRK00523 hypothetical protein; Provisional

Probab=87.42  E-value=0.78  Score=31.14  Aligned_cols=28  Identities=32%  Similarity=0.268  Sum_probs=17.7

Q ss_pred             HHHHHHHHHH-HHHH-hhHHHhhhhhhcch
Q psy16295         94 KGMALAGGAV-LAQG-QGTMEMSCKSYKNT  121 (128)
Q Consensus        94 iG~~i~gga~-~~~g-~~~~~~~~~~~~~~  121 (128)
                      +|++|.-+++ +++| ++|++++||.|++-
T Consensus         4 ~~l~I~l~i~~li~G~~~Gffiark~~~k~   33 (72)
T PRK00523          4 IGLALGLGIPLLIVGGIIGYFVSKKMFKKQ   33 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443333 4444 67999999999864

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=87.34  E-value=4.8  Score=34.82  Aligned_cols=80  Identities=19%  Similarity=0.272  Sum_probs=54.4

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh---------hhchHHHHHHHHHHHhcCC
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR---------IKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk---------lgdY~~A~~~~~~lL~~eP   72 (128)
                      .+|.||.||.|-+.+.|..+++.++.+++....+   ...|-+-.++=.|..         ....++|...+....+++|
T Consensus       181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~---~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  181 IKFQYAFALNRRNKPGDREKALQILLPVLESDEN---PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC---CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            5899999999988889999999999995555422   455644444433322         2335677777777777777


Q ss_pred             CCHHHHHHHHHH
Q psy16295         73 ENSQVQHLESIV   84 (128)
Q Consensus        73 ~N~QA~~Lk~~I   84 (128)
                      +--.+..+-.+.
T Consensus       258 ~~Y~GIN~AtLL  269 (374)
T PF13281_consen  258 DYYSGINAATLL  269 (374)
T ss_pred             cccchHHHHHHH
Confidence            665555554443

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=87.25  E-value=7.3  Score=29.35  Aligned_cols=64  Identities=8%  Similarity=-0.026  Sum_probs=55.0

Q ss_pred             ccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295         12 RSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus        12 ~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      ...|++....-++..++.++.. |    ..+.+.-++.....+||-++|++..++....-|.+.-.+.+
T Consensus       120 ~~~~~~~l~~~~~~a~~~l~~~-P----~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~  183 (193)
T PF11846_consen  120 LPPDPEMLEAYIEWAERLLRRR-P----DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ  183 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            6788888999999999999988 6    45666667999999999999999999999999976666555

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0548|consensus

Probab=87.22  E-value=2.1  Score=38.69  Aligned_cols=45  Identities=9%  Similarity=-0.039  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      =.+-+.=++.++.-+|+|++|+..+..-|++||+|.|..+=+.-.
T Consensus        69 w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a  113 (539)
T KOG0548|consen   69 WAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQA  113 (539)
T ss_pred             hhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence            456677889999999999999999999999999999976544333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=86.92  E-value=2.5  Score=39.78  Aligned_cols=60  Identities=15%  Similarity=0.046  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      -+++.++++.....+ |   +..+..+-.+..+-.++|+.+|....+.+++..|+|..++.|+.
T Consensus       466 p~~A~~~~k~a~~l~-P---~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r  525 (822)
T PRK14574        466 PRKAEQELKAVESLA-P---RSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR  525 (822)
T ss_pred             HHHHHHHHHHHhhhC-C---ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence            345555555544444 4   56788888889999999999999999999999999999999886

>KOG1128|consensus

Probab=86.91  E-value=1.8  Score=40.62  Aligned_cols=58  Identities=12%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      ..|..+....|+.-++-+ |   .+-+-||.+.-+..+++++..|.++....+..||+|..+
T Consensus       498 ~~~fs~~~~hle~sl~~n-p---lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~ea  555 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEIN-P---LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEA  555 (777)
T ss_pred             chhHHHHHHHHHHHhhcC-c---cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhh
Confidence            467889999999999999 6   899999999999999999999999999999999999876

>KOG1155|consensus

Probab=86.91  E-value=3.3  Score=37.35  Aligned_cols=71  Identities=17%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             hhHHHHHHHHHHHhhcc-----CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         17 ADIRKGILLLEELFKTE-----TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~-----~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      +|..++....+..+...     ..  +..+...-+||.-..|.+||++|--|+..+|.-+|+...|++|.+-|.+.++
T Consensus       480 ~d~~eAa~~yek~v~~~~~eg~~~--~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~~~  555 (559)
T KOG1155|consen  480 KDLNEAAQYYEKYVEVSELEGEID--DETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKIQA  555 (559)
T ss_pred             HhHHHHHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            45566766666655521     11  2467777779999999999999999999999999999999999999987654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=86.46  E-value=5.1  Score=33.14  Aligned_cols=65  Identities=9%  Similarity=0.111  Sum_probs=52.1

Q ss_pred             HHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295         22 GILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET   90 (128)
Q Consensus        22 GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k   90 (128)
                      +...+..+.... |   ..++.+--++..+++.|+|.+|...+..+.+..|+|.-+..++-.+=++.-+
T Consensus        85 ~l~~~~~~~~~~-~---~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          85 SLAVLQKSAIAY-P---KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             hHHHHhhhhccC-c---ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            334444444444 3   4677777789999999999999999999999999999999999999777644

>KOG1173|consensus

Probab=86.18  E-value=4.6  Score=37.00  Aligned_cols=71  Identities=10%  Similarity=0.079  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHhhhH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ-VQHLESIVKKRMETEG   92 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q-A~~Lk~~Ie~~i~kdG   92 (128)
                      ...++|.-++.-+.-. |   ...+..--+|+.|..+|+.+.|..+....|-+.|+|.- ..-|+..|++-..+.|
T Consensus       470 ~~~eAI~~~q~aL~l~-~---k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~~~~~~~  541 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLLS-P---KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIEDSECKSG  541 (611)
T ss_pred             hHHHHHHHHHHHHHcC-C---CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHhhhhhcc
Confidence            4557888888877777 5   67888888999999999999999999999999999954 4556777777555544

>KOG4234|consensus

Probab=86.03  E-value=5  Score=33.03  Aligned_cols=37  Identities=11%  Similarity=0.185  Sum_probs=32.7

Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295         45 YYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus        45 YyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      -=-|.+|-++-.|++|+.=+..+|+++|.++||+.=-
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i  208 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAI  208 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            3448899999999999999999999999999997533

>KOG0624|consensus

Probab=86.02  E-value=5.9  Score=34.94  Aligned_cols=66  Identities=12%  Similarity=0.083  Sum_probs=56.0

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      -.+.-++|.-..+.+..+ |   ...+.|---|-+|.--.+|+.|+.-++..++.+|+|+|+++=++-.+
T Consensus       320 d~~~~eAiqqC~evL~~d-~---~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak  385 (504)
T KOG0624|consen  320 DEQFGEAIQQCKEVLDID-P---DDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAK  385 (504)
T ss_pred             cCCHHHHHHHHHHHHhcC-c---hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            345668999999999888 6   57888999999999999999999999999999999999876554443

>KOG4340|consensus

Probab=85.19  E-value=2.1  Score=37.08  Aligned_cols=61  Identities=21%  Similarity=0.236  Sum_probs=50.5

Q ss_pred             HHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          9 CLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         9 aLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      .|||..-   ...+|++|..-.+.+ |   +.|--|..|+-+||+..+|.+|-.+++++=+..|+-.|
T Consensus        19 ~lI~d~r---y~DaI~~l~s~~Er~-p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q   79 (459)
T KOG4340|consen   19 RLIRDAR---YADAIQLLGSELERS-P---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ   79 (459)
T ss_pred             HHHHHhh---HHHHHHHHHHHHhcC-c---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence            3555432   335788888877777 5   78999999999999999999999999999999998776

>KOG1125|consensus

Probab=85.11  E-value=2.5  Score=38.57  Aligned_cols=58  Identities=12%  Similarity=0.070  Sum_probs=46.2

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      ..+..+--+++-+..+.. |. ....|.---|+|-||-.|+|++|..+.+.+|+.+|+|-
T Consensus       407 ~~~l~~i~~~fLeaa~~~-~~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~  464 (579)
T KOG1125|consen  407 SSHLAHIQELFLEAARQL-PT-KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY  464 (579)
T ss_pred             HHHHHHHHHHHHHHHHhC-CC-CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH
Confidence            344455556677777776 41 46788888889999999999999999999999999974

>KOG3060|consensus

Probab=84.82  E-value=3.6  Score=34.47  Aligned_cols=51  Identities=18%  Similarity=0.080  Sum_probs=42.1

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+|+-|.+.++.=    ....|.|-+||=-|.-.|+|++|--+.+.++=+.|.|+
T Consensus       138 ~aIk~ln~YL~~F----~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~  188 (289)
T KOG3060|consen  138 EAIKELNEYLDKF----MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP  188 (289)
T ss_pred             HHHHHHHHHHHHh----cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence            3555555555554    25689999999999999999999999999999999997

>KOG0624|consensus

Probab=84.60  E-value=3.7  Score=36.16  Aligned_cols=63  Identities=17%  Similarity=0.220  Sum_probs=49.3

Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          7 SFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         7 AwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      |-|++.-.   +.+++|.=|+..-+-.    .++.|-+|-++--+|..||-+++++-+..+|+.+|+..-
T Consensus       196 akc~i~~~---e~k~AI~Dlk~askLs----~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~  258 (504)
T KOG0624|consen  196 AKCYIAEG---EPKKAIHDLKQASKLS----QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL  258 (504)
T ss_pred             HHHHHhcC---cHHHHHHHHHHHHhcc----ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence            34444433   3446777776666555    368999999999999999999999999999999999753

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=84.38  E-value=6.3  Score=34.50  Aligned_cols=72  Identities=18%  Similarity=0.071  Sum_probs=58.5

Q ss_pred             HhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         10 LVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        10 Lv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      ++-+=.+.|..+=|..+|.-++.+ |   .+.+.++.|+.-++|.+.|.+|..+.+..|...|+..--..|-...+
T Consensus       301 ~~~~l~~~d~~~l~k~~e~~l~~h-~---~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~  372 (400)
T COG3071         301 LIPRLRPGDPEPLIKAAEKWLKQH-P---EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALD  372 (400)
T ss_pred             HHhhcCCCCchHHHHHHHHHHHhC-C---CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence            333444566666778888888888 5   45699999999999999999999999999999999888777766665

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=84.32  E-value=3.7  Score=36.54  Aligned_cols=39  Identities=10%  Similarity=-0.058  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      +.+.-+|+.+...|++++|..++++.++.+|+ -.+-.+.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~l  459 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLL  459 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHH
Confidence            44444555555566666666666666666663 3343333

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=83.90  E-value=9.3  Score=33.06  Aligned_cols=78  Identities=19%  Similarity=0.126  Sum_probs=60.9

Q ss_pred             CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh---hhchHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         14 EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR---IKEYTKSLKYCRA-FLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        14 ~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk---lgdY~~A~~~~~~-lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      ++-+|...=|.|.+.+=.-...+-..+...-+++|++..|   -||.++|++.+.. +...++.++....|.-.|-+.+-
T Consensus       152 RdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~  231 (374)
T PF13281_consen  152 RDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLF  231 (374)
T ss_pred             hhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence            5667777778887776555111113567788899999999   9999999999988 77888899999999988887775


Q ss_pred             hh
Q psy16295         90 TE   91 (128)
Q Consensus        90 kd   91 (128)
                      .+
T Consensus       232 ~~  233 (374)
T PF13281_consen  232 LE  233 (374)
T ss_pred             HH
Confidence            54

>KOG2076|consensus

Probab=83.71  E-value=8.2  Score=36.95  Aligned_cols=55  Identities=16%  Similarity=0.199  Sum_probs=41.6

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+..++.++|.++++.+ |   ....-+|+||..|=.+||-++|+.+|-..=...|.|.
T Consensus       153 g~~eeA~~i~~EvIkqd-p---~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~  207 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQD-P---RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY  207 (895)
T ss_pred             CCHHHHHHHHHHHHHhC-c---cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence            67788999999999998 6   6677777777777777777777766666666666665

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=83.64  E-value=11  Score=32.68  Aligned_cols=57  Identities=19%  Similarity=0.231  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ...+++++|++|.+.+ |      +..+.||-.+...++..+|.+..+..|+..|.+.....+.
T Consensus       184 ~~~~ai~lle~L~~~~-p------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Q  240 (395)
T PF09295_consen  184 RYDEAIELLEKLRERD-P------EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQ  240 (395)
T ss_pred             cHHHHHHHHHHHHhcC-C------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3667888888877776 5      2456677777777888888888888888888775444333

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1129|consensus

Probab=83.51  E-value=2  Score=37.56  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295         43 YLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus        43 ~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      -=|++|+.+||.+.|+..-..|.++|+.-|+++-+-.||-
T Consensus         6 ~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKm   45 (478)
T KOG1129|consen    6 LDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKM   45 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            3489999999999999999999999999999887777764

>KOG1174|consensus

Probab=83.32  E-value=12  Score=33.71  Aligned_cols=80  Identities=14%  Similarity=0.157  Sum_probs=56.2

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHH-------HHHhh
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET--EGLKGMALAGGAVL-------AQGQG  109 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k--dGliG~~i~gga~~-------~~g~~  109 (128)
                      ..+.-|+--+--.|-.++|++|+.|.+...+.||.|.|+.-||-..=..+.|  +..|..  =...-+       =-|++
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF--R~Aq~Lap~rL~~Y~GL~  375 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF--RTAQMLAPYRLEIYRGLF  375 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH--HHHHhcchhhHHHHHHHH
Confidence            4556666666667888999999999999999999999999998766555544  333321  110112       23667


Q ss_pred             HHHhhhhhhcc
Q psy16295        110 TMEMSCKSYKN  120 (128)
Q Consensus       110 ~~~~~~~~~~~  120 (128)
                      --+|++++||.
T Consensus       376 hsYLA~~~~kE  386 (564)
T KOG1174|consen  376 HSYLAQKRFKE  386 (564)
T ss_pred             HHHHhhchHHH
Confidence            77888888875

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=83.20  E-value=11  Score=28.33  Aligned_cols=74  Identities=5%  Similarity=0.092  Sum_probs=56.1

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc---------------hHHHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE---------------YTKSLKYCRA   66 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd---------------Y~~A~~~~~~   66 (128)
                      ++...+.+.-++.+-.   .++.-++..++-+ |....-.-.+|..+++++++.+               ..+|++..+.
T Consensus        49 AqL~l~yayy~~~~y~---~A~a~~~rFirLh-P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~  124 (142)
T PF13512_consen   49 AQLDLAYAYYKQGDYE---EAIAAYDRFIRLH-PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQ  124 (142)
T ss_pred             HHHHHHHHHHHccCHH---HHHHHHHHHHHhC-CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHH
Confidence            3556677777776554   6777777777776 5323555667888999999998               8999999999


Q ss_pred             HHhcCCCCHHHHH
Q psy16295         67 FLAIESENSQVQH   79 (128)
Q Consensus        67 lL~~eP~N~QA~~   79 (128)
                      +++.-|+..=|..
T Consensus       125 lv~~yP~S~ya~d  137 (142)
T PF13512_consen  125 LVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHCcCChhHHH
Confidence            9999999876654

>KOG3785|consensus

Probab=83.17  E-value=5.8  Score=35.20  Aligned_cols=76  Identities=12%  Similarity=0.218  Sum_probs=60.0

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH-----HHHHHHhh
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES-----IVKKRMET   90 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~-----~Ie~~i~k   90 (128)
                      +.|.+++|++....+-++ |   .---.=-|+|+.+||+-=|+-+-..++--|+--|+..=|+.|+.     +|..+.+.
T Consensus       164 R~HYQeAIdvYkrvL~dn-~---ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae  239 (557)
T KOG3785|consen  164 RMHYQEAIDVYKRVLQDN-P---EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAE  239 (557)
T ss_pred             HHHHHHHHHHHHHHHhcC-h---hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhH
Confidence            567889999999998887 4   22333458999999999999999999999999999999999885     44445544


Q ss_pred             hHHHH
Q psy16295         91 EGLKG   95 (128)
Q Consensus        91 dGliG   95 (128)
                      |-..-
T Consensus       240 ~E~k~  244 (557)
T KOG3785|consen  240 DEKKE  244 (557)
T ss_pred             HHHHH
Confidence            44443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=82.85  E-value=21  Score=28.52  Aligned_cols=79  Identities=13%  Similarity=0.196  Sum_probs=56.5

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccC--ccc-cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC---CCHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTET--EDI-DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES---ENSQVQ   78 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~-~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP---~N~QA~   78 (128)
                      +.|..+++..   +..++|++++++.+..-  +-+ ..-++++.-..+.|.-.||+..|++.++...+.+|   +-+..+
T Consensus       160 ~~A~l~~~l~---~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~  236 (282)
T PF14938_consen  160 KAADLYARLG---RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK  236 (282)
T ss_dssp             HHHHHHHHTT----HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred             HHHHHHHHhC---CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence            3444455544   77899999999887531  100 13456667778899999999999999999999999   567777


Q ss_pred             HHHHHHHH
Q psy16295         79 HLESIVKK   86 (128)
Q Consensus        79 ~Lk~~Ie~   86 (128)
                      -|..+|+.
T Consensus       237 ~~~~l~~A  244 (282)
T PF14938_consen  237 FLEDLLEA  244 (282)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777763

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=82.79  E-value=3.6  Score=33.21  Aligned_cols=68  Identities=9%  Similarity=0.079  Sum_probs=46.2

Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          7 SFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         7 AwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ++|++=-....|...|..++|..++.- |   ...++|....-=..+++|.++||...++.+..-|...+..
T Consensus        40 ~~A~~E~~~~~d~~~A~~Ife~glk~f-~---~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~  107 (280)
T PF05843_consen   40 AYALMEYYCNKDPKRARKIFERGLKKF-P---SDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSK  107 (280)
T ss_dssp             HHHHHHHHTCS-HHHHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHH
Confidence            455552222344557899999988886 4   4566666555555688999999999999999988888633

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4626|consensus

Probab=82.62  E-value=4.1  Score=38.34  Aligned_cols=66  Identities=9%  Similarity=0.020  Sum_probs=49.8

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      |+|.||   ++..++.+|+.....-++-. |   ...|.+|-|+..+-.+|..++|.+.+...|++-|+...+
T Consensus       325 NlanAL---kd~G~V~ea~~cYnkaL~l~-p---~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa  390 (966)
T KOG4626|consen  325 NLANAL---KDKGSVTEAVDCYNKALRLC-P---NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA  390 (966)
T ss_pred             HHHHHH---HhccchHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh
Confidence            455555   35577788888888877777 5   578888888888888888888888888888888876544

>PRK01844 hypothetical protein; Provisional

Probab=82.58  E-value=1.8  Score=29.41  Aligned_cols=18  Identities=17%  Similarity=-0.092  Sum_probs=13.4

Q ss_pred             HHHHhhHHHhhhhhhcch
Q psy16295        104 LAQGQGTMEMSCKSYKNT  121 (128)
Q Consensus       104 ~~~g~~~~~~~~~~~~~~  121 (128)
                      ++.+++|++++||.|++-
T Consensus        15 i~G~~~Gff~ark~~~k~   32 (72)
T PRK01844         15 VAGVALGFFIARKYMMNY   32 (72)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333467999999999863

>KOG0376|consensus

Probab=82.46  E-value=3.7  Score=36.70  Aligned_cols=71  Identities=7%  Similarity=0.002  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMETEGL   93 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~kdGl   93 (128)
                      ...++.=+...++.+ |   ..-.|.|.-|.++.++++|.+|+.-.+....+.|+.++++..-...+..+++++.
T Consensus        54 ~~~Al~Da~kaie~d-P---~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f  124 (476)
T KOG0376|consen   54 FGGALHDALKAIELD-P---TYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKF  124 (476)
T ss_pred             hhhHHHHHHhhhhcC-c---hhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence            334444444455556 6   5677888889999999999999999999999999999999999988888877543

>KOG1126|consensus

Probab=82.30  E-value=6.3  Score=36.39  Aligned_cols=64  Identities=19%  Similarity=0.191  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      +++.+++.-+.-+ |   ...=|.|+-|.-.+-+++|.+|+.-.|.|=++-|++.-+-.|.-.|-+++
T Consensus       541 ~AL~~~~~A~~ld-~---kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  541 KALQLYEKAIHLD-P---KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             HHHHHHHHHHhcC-C---CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            4444444444444 2   33444444444444444444444444444444444444444444444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=82.05  E-value=7.8  Score=34.75  Aligned_cols=65  Identities=11%  Similarity=0.058  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~   87 (128)
                      ..++++.++..+.-. |   .++=..+-+|-++.+.|++.+|.+.++..+.-+|+|+-.-.+..-..+.
T Consensus       356 ~~~A~e~~~kal~l~-P---~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         356 AKEAIERLKKALALD-P---NSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             hHHHHHHHHHHHhcC-C---CccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            346777777777776 5   4577888899999999999999999999999999999887776655443

>PRK15331 chaperone protein SicA; Provisional

Probab=81.96  E-value=9.9  Score=29.42  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=45.1

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          6 YSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      ++++.++-- .++.+++|.+..--.--+ +   ....-.||.|..+..+|+-++|+.+.+...+ .|++.+
T Consensus        75 ~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~-~---~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331         75 MGLAAVCQL-KKQFQKACDLYAVAFTLL-K---NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHcc-c---CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence            344444433 455667777766544333 2   2344589999999999999999999999998 466554

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.76  E-value=4.2  Score=24.70  Aligned_cols=30  Identities=17%  Similarity=0.162  Sum_probs=25.4

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccC
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTET   34 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~   34 (128)
                      ++|++|.+++...+.+   .+.++|++++.++.
T Consensus         1 ~kLdLA~ayie~Gd~e---~Ar~lL~evl~~~~   30 (44)
T TIGR03504         1 TKLDLARAYIEMGDLE---GARELLEEVIEEGD   30 (44)
T ss_pred             CchHHHHHHHHcCChH---HHHHHHHHHHHcCC
Confidence            5899999999998665   78899999997763

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13830 DUF4192: Domain of unknown function (DUF4192)

Probab=81.37  E-value=11  Score=30.97  Aligned_cols=66  Identities=14%  Similarity=0.006  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295         20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~   87 (128)
                      ..+.+|+.++.+.-.+  ..+-+-+-.+|+.+|..|+=..|.-+.+..|+.+|+++=+.-|.+.++.-
T Consensus       255 ~~a~~lw~~~~r~~~~--~~ra~~l~l~a~~a~~~g~g~~A~~al~~a~~~~p~~~la~ll~~~l~~g  320 (324)
T PF13830_consen  255 QAAERLWRALARRLPG--PWRAAALALLAWAAWLRGDGALAGVALDRALEADPDHSLAQLLDQALQAG  320 (324)
T ss_pred             hHHHHHHHHHHHhcCC--ccchHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCcHHHHHHHHHHcC
Confidence            3578899999998633  57899999999999999999999999999999999999999888887653

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=81.13  E-value=7.7  Score=26.78  Aligned_cols=53  Identities=13%  Similarity=0.186  Sum_probs=39.8

Q ss_pred             ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q psy16295         15 FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFL   68 (128)
Q Consensus        15 ~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL   68 (128)
                      +..+.+++|...+..++.. ++...+=..|=||+-+|...|+|.+.++|...=+
T Consensus        18 ~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             ccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778999999988886 3213444556788999999999999999965433

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2002|consensus

Probab=80.22  E-value=3.8  Score=39.51  Aligned_cols=68  Identities=12%  Similarity=0.001  Sum_probs=45.2

Q ss_pred             ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         15 FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        15 ~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      ++.|.+.++.+....++.+ |  .-..|-.--++....++++-+.|+..|++.|+++|.|--+.-....++
T Consensus       176 nkkdY~~al~yyk~al~in-p--~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~  243 (1018)
T KOG2002|consen  176 NKKDYRGALKYYKKALRIN-P--ACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVD  243 (1018)
T ss_pred             ccccHHHHHHHHHHHHhcC-c--ccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence            3556666777777777766 5  355565555566666777888888888888888886665555555444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=80.16  E-value=3.2  Score=35.94  Aligned_cols=54  Identities=15%  Similarity=0.187  Sum_probs=37.5

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      ++..+++++|..-+..+ |   .....--.++=-+...|+|..|.+.|+.+++.+|+-
T Consensus       194 ~~~d~A~~~l~kAlqa~-~---~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y  247 (389)
T COG2956         194 SDVDRARELLKKALQAD-K---KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY  247 (389)
T ss_pred             hhHHHHHHHHHHHHhhC-c---cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence            34556777777777777 4   344455566666777788888888888888877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
1pc2_A	152	Solution Structure Of Human Mitochondria Fission Pr		6e-18
1iyg_A	133	Solution Structure Of Rsgi Ruh-001, A Fis1p-Like An		1e-17
1nzn_A	126	Cytosolic Domain Of The Human Mitchondrial Fission		7e-17
2pqn_A	129	Crystal Structure Of Yeast Fis1 Complexed With A Fr		6e-06
1y8m_A	144	Solution Structure Of Yeast Mitochondria Fission Pr		6e-06
3o48_A	134	Crystal Structure Of Fission Protein Fis1 From Sacc		6e-06

>pdb|1PC2|A Chain A, Solution Structure Of Human Mitochondria Fission Protein Fis1 Length = 152

Iteration: 1
 Score = 85.9 bits (211), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 2   TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVRS++  DIRKGI            +   +RDY++YLA+GN R+KEY K+L
Sbjct: 34  TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91
Query: 62  KYCRAFLAIESENSQVQHLESIVKKRM 88
           KY R  L  E +N+Q + LE ++ K M
Sbjct: 92  KYVRGLLQTEPQNNQAKELERLIDKAM 118

>pdb|1IYG|A Chain A, Solution Structure Of Rsgi Ruh-001, A Fis1p-Like And Cgi- 135 Homologous Domain From A Mouse Cdna Length = 133

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 2   TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVRS++  DIR+GI            +   +RDY++YLA+GN R+KEY K+L
Sbjct: 41  TQFEYAWCLVRSKYNEDIRRGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 98
Query: 62  KYCRAFLAIESENSQVQHLESIVKKRM 88
           KY R  L  E +N+Q + LE ++ K M
Sbjct: 99  KYVRGLLQTEPQNNQAKELERLIDKAM 125

>pdb|1NZN|A Chain A, Cytosolic Domain Of The Human Mitchondrial Fission Protein Fis1 Adopts A Tpr Fold Length = 126

Iteration: 1
 Score = 82.0 bits (201), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 2   TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVR+ +  DIRKGI            +   +RDY++YLA+GN R+KEY K+L
Sbjct: 37  TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 94
Query: 62  KYCRAFLAIESENSQVQHLESIVKK 86
           KY R  L  E +N+Q + LE ++ K
Sbjct: 95  KYVRGLLQTEPQNNQAKELERLIDK 119

>pdb|2PQN|A Chain A, Crystal Structure Of Yeast Fis1 Complexed With A Fragment Of Yeast Mdv1 Length = 129

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 2   TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
           ++FNY++ L++S    D R G+               R+R+ LYYL IG  ++ EY+ + 
Sbjct: 41  SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 97
Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETE 91
           +Y       E  N QV  L+S+V+ +++ E
Sbjct: 98  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 127

>pdb|1Y8M|A Chain A, Solution Structure Of Yeast Mitochondria Fission Protein Fis1 Length = 144

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 2   TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
           ++FNY++ L++S    D R G+               R+R+ LYYL IG  ++ EY+ + 
Sbjct: 41  SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 97
Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETE 91
           +Y       E  N QV  L+S+V+ +++ E
Sbjct: 98  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 127

>pdb|3O48|A Chain A, Crystal Structure Of Fission Protein Fis1 From Saccharomyces Cerevisiae Length = 134

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 2   TQFNYSFCLVRSEFCADIRKGIXXXXXXXXXXXXDIDRKRDYLYYLAIGNARIKEYTKSL 61
           ++FNY++ L++S    D R G+               R+R+ LYYL IG  ++ EY+ + 
Sbjct: 42  SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 98
Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETE 91
           +Y       E  N QV  L+S+V+ +++ E
Sbjct: 99  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	1e-38
1pc2_A	152	Mitochondria fission protein; unknown function; NM	6e-38
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	4e-31
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	5e-30

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 144

 Score =  126 bits (317), Expect = 1e-38
 Identities = 35/104 (33%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           ++FNY++ L++S    D R G+ +L +++K       R+R+ LYYL IG  ++ EY+ + 
Sbjct: 41  SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 97

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLA 105
           +Y       E  N QV  L+S+V+ +++ E LKG+ +AGG    
Sbjct: 98  RYVDTLFEHERNNKQVGALKSMVEDKIQKETLKGVVVAGGVHHH 141

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Length = 152

 Score =  124 bits (313), Expect = 6e-38
 Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 2/106 (1%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVRS++  DIRKGI+LLEEL    +++   +RDY++YLA+GN R+KEY K+L
Sbjct: 34  TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 91

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGLKGMALAGGAVLAQG 107
           KY R  L  E +N+Q + LE ++ K M+ +GL GMA+ GG  L   
Sbjct: 92  KYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVA 137

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Length = 126

 Score =  106 bits (266), Expect = 4e-31
 Identities = 46/92 (50%), Positives = 67/92 (72%), Gaps = 2/92 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVR+ +  DIRKGI+LLEEL    +++   +RDY++YLA+GN R+KEY K+L
Sbjct: 37  TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 94

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETEGL 93
           KY R  L  E +N+Q + LE ++ K M+ +GL
Sbjct: 95  KYVRGLLQTEPQNNQAKELERLIDKAMKKDGL 126

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A Length = 134

 Score =  103 bits (259), Expect = 5e-30
 Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 3/90 (3%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           ++FNY++ L++S    D R G+ +L +++K       R+R+ LYYL IG  ++ EY+ + 
Sbjct: 42  SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES---RRRECLYYLTIGCYKLGEYSMAK 98

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETE 91
           +Y       E  N QV  L+S+V+ +++ E
Sbjct: 99  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	100.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	100.0
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	100.0
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	100.0
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.68
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.61
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.6
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.59
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.53
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.53
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.5
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.5
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.44
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.43
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.41
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.41
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.38
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.38
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.37
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.37
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.36
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.35
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.33
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.31
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.3
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.29
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.29
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.29
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.27
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.25
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.24
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.24
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.23
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.22
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.21
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.21
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.21
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.2
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.19
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.19
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.18
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.17
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.17
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.14
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.1
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.09
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.09
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.05
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.03
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.03
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.0
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.98
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.96
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.96
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.94
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.94
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.93
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.92
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.91
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.91
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.91
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.89
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.85
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.84
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.83
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.83
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.8
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.8
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.78
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.77
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.77
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.76
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.75
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.72
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.72
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.72
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.7
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.7
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.69
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.68
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.66
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.66
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.66
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.64
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	97.64
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.63
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.62
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	97.6
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.59
3u4t_A	272	TPR repeat-containing protein; structural genomics	97.58
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	97.57
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.56
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.56
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.54
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.52
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.51
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.51
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.51
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.51
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.48
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.47
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.42
2gw1_A	514	Mitochondrial precursor proteins import receptor;	97.42
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.41
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.4
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.39
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.33
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.25
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.15
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.14
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.06
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	96.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.86
4g1t_A	472	Interferon-induced protein with tetratricopeptide	96.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	96.73
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.71
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	96.64
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.63
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.5
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.43
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	96.42
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.38
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	96.27
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	96.22
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.1
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.03
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	95.88
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	95.87
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	95.74
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.71
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.66
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	95.64
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.44
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	95.42
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	95.37
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	95.32
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.31
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	95.28
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.11
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.02
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	94.94
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	94.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	94.82
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	94.81
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	94.73
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	94.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	94.64
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	94.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.57
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	94.51
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	94.51
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	94.49
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.42
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	94.37
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	94.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.2
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	93.85
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	93.69
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	93.68
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	93.17
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	92.81
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	92.53
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	92.39
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	92.24
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	92.1
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.09
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.65
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	90.62
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	88.59
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.97
1klx_A	138	Cysteine rich protein B; structural genomics, heli	87.94
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	87.77
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	87.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	87.76
2cfu_A	658	SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1	87.62
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	86.4
1pc2_A	152	Mitochondria fission protein; unknown function; NM	85.18
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	84.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	84.15
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	80.28

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=100.00  E-value=1.7e-44  Score=270.03  Aligned_cols=98  Identities=37%  Similarity=0.717  Sum_probs=95.5

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ++||||||||||++++|+++||.||+++++++ |  +++|||+||||+||||+|||++|++||+.+|++||+|+||++|+
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~--~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-E--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-C--STHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-c--cchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            79999999999999999999999999999988 6  69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHH
Q psy16295         82 SIVKKRMETEGLKGMALAGGA  102 (128)
Q Consensus        82 ~~Ie~~i~kdGliG~~i~gga  102 (128)
                      ++|+++|+|||+|||||+||+
T Consensus       118 ~~Ie~~i~kdGliG~ai~gg~  138 (144)
T 1y8m_A          118 SMVEDKIQKETLKGVVVAGGV  138 (144)
T ss_dssp             HHHHHHHHHTTTTTCCCCCSC
T ss_pred             HHHHHHHHHhchhhhhhhhcc
Confidence            999999999999999999984

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.2e-41  Score=255.95  Aligned_cols=104  Identities=51%  Similarity=0.942  Sum_probs=99.1

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ++|+|||+|+||+++.|+++||.+|+++++.+.|  +++|||+||||+||||+|||++|++|++++|++||+|+||+.|+
T Consensus        34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--cchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            6899999999999999999999999999999855  58999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy16295         82 SIVKKRMETEGLKGMALAGGAVLAQG  107 (128)
Q Consensus        82 ~~Ie~~i~kdGliG~~i~gga~~~~g  107 (128)
                      ++|++++++||+|||||+||+++++|
T Consensus       112 ~~ie~~~~kdgl~G~~i~gg~~~~~~  137 (152)
T 1pc2_A          112 RLIDKAMKKDGLVGMAIVGGMALGVA  137 (152)
T ss_dssp             HHHHHHHHHTTCCCSSCSSSSSCCSS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999875554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=100.00  E-value=1.6e-38  Score=235.31  Aligned_cols=90  Identities=33%  Similarity=0.641  Sum_probs=87.3

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      |+|+||||||||+++.|+++||.||+++++++ |  +++||||||||+||||+|||++|++|++.+|++||+|+||++|+
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~--~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-E--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-G--GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-c--chhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            79999999999999999999999999999998 6  69999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHHH
Q psy16295         82 SIVKKRMETEGLK   94 (128)
Q Consensus        82 ~~Ie~~i~kdGli   94 (128)
                      ++|+++|+|||-+
T Consensus       119 ~~Ie~ki~kd~~~  131 (134)
T 3o48_A          119 SMVEDKIQKEENL  131 (134)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccc
Confidence            9999999999953

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=100.00  E-value=1.8e-38  Score=232.62  Aligned_cols=90  Identities=51%  Similarity=0.970  Sum_probs=86.0

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ++|+|||+||||+++.|+++||.||+++++++.|  +++|||+||||+||||+|||++|++|++.+|++||+|+||++|+
T Consensus        37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p--~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk  114 (126)
T 1nzn_A           37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK--EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  114 (126)
T ss_dssp             HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            6899999999999999999999999999999856  68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhHH
Q psy16295         82 SIVKKRMETEGL   93 (128)
Q Consensus        82 ~~Ie~~i~kdGl   93 (128)
                      ++|+++|+|||+
T Consensus       115 ~~i~~~i~kdGl  126 (126)
T 1nzn_A          115 RLIDKAMKKDGL  126 (126)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHhccC
Confidence            999999999996

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.97  E-value=2.9e-09  Score=71.85  Aligned_cols=81  Identities=15%  Similarity=0.037  Sum_probs=75.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+.||.+|+.+.+.....++..+|++.++.+ |   .....+++++..+++.|+|.+|+.+|+.+|+.+|+++....+.+
T Consensus         9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p---~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~~i~~   84 (93)
T 3bee_A            9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLE-P---YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRVTIIE   84 (93)
T ss_dssp             HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence            5789999999999888899999999999999 7   68999999999999999999999999999999999888888888


Q ss_pred             HHHHH
Q psy16295         83 IVKKR   87 (128)
Q Consensus        83 ~Ie~~   87 (128)
                      .|++.
T Consensus        85 ~I~~A   89 (93)
T 3bee_A           85 SINKA   89 (93)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.68  E-value=1.8e-07  Score=59.68  Aligned_cols=71  Identities=20%  Similarity=0.344  Sum_probs=63.6

Q ss_pred             ChHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHH-HHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          1 MTQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRD-YLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         1 ~~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd-~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      |..|+.|..+.+..+   ..++++.++..++.+ |   ...+ .++.+|..++++|+|++|+.+++.+++.+|+|.++.
T Consensus         1 ~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~-p---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            1 MDQLKTIKELINQGD---IENALQALEEFLQTE-P---VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             CCTHHHHHHHHHHTC---HHHHHHHHHHHHHHC-S---STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             CcHHHHHHHHHHcCC---HHHHHHHHHHHHHHC-C---CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            678889999888764   568999999999998 6   4567 999999999999999999999999999999999886

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.61  E-value=2.5e-07  Score=61.50  Aligned_cols=77  Identities=12%  Similarity=0.096  Sum_probs=64.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|.++....+   ..++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++..|+..|+|++......
T Consensus        30 ~~~lg~~~~~~~~---~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           30 YLGLGSTFRTLGE---YRKAEAVLANGVKQF-P---NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            4677777776654   458999999999888 6   56899999999999999999999999999999999998887777


Q ss_pred             HHHH
Q psy16295         83 IVKK   86 (128)
Q Consensus        83 ~Ie~   86 (128)
                      .|..
T Consensus       103 ai~~  106 (117)
T 3k9i_A          103 AILF  106 (117)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.60  E-value=3.7e-07  Score=62.67  Aligned_cols=70  Identities=11%  Similarity=0.143  Sum_probs=52.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      -++.|.++.+..+   ..++++.++..++-+ |   ...+.++.+|..+.++|+|++|+.+++..|+++|+|.+++.
T Consensus        50 ~~~~~~~~~~~~~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~  119 (126)
T 4gco_A           50 YSNRAACLTKLME---FQRALDDCDTCIRLD-S---KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE  119 (126)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhhHHHhhcc---HHHHHHHHHHHHHhh-h---hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            3566777766553   446788888877777 5   56778888888888888888888888888888888887754

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.59  E-value=5.8e-07  Score=59.01  Aligned_cols=64  Identities=8%  Similarity=0.011  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      +++..++..++.. |+.....+.+|.+|..++++|+|++|+.+++.+++..|++..+...+..+.
T Consensus        57 ~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           57 LAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            4555555555444 310111445555555555555555555555555555555555544444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.59  E-value=3.7e-07  Score=63.43  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH-HHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS-QVQHLE   81 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~-QA~~Lk   81 (128)
                      -++.|.++.+..   +..+++..++..++.+ |   ...+.+|.+|.+++++|+|++|+.+++..|+++|+|. .+....
T Consensus        66 ~~nla~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           66 YANMSQCYLNIG---DLHEAEETSSEVLKRE-E---TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHhcC---cHHHHHHHHHHHHhcC-C---cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            356777777655   4568999999999988 6   6789999999999999999999999999999999999 556566


Q ss_pred             HHHHHHHh
Q psy16295         82 SIVKKRME   89 (128)
Q Consensus        82 ~~Ie~~i~   89 (128)
                      ..+..++.
T Consensus       139 ~~~~~~~~  146 (162)
T 3rkv_A          139 KIVTERRA  146 (162)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655554

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.53  E-value=3.8e-07  Score=62.60  Aligned_cols=75  Identities=8%  Similarity=0.110  Sum_probs=52.8

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|++|..+.+..   +..+++..++..+..+ |   ...+.++.+|..++++|+|++|+.+++..++++|+|..+....-
T Consensus        21 ~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   93 (142)
T 2xcb_A           21 LYALGFNQYQAG---KWDDAQKIFQALCMLD-H---YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHc---cHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            456666666654   3446777777777777 5   56777777788888888888888888888888887777655444


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus        94 ~~   95 (142)
T 2xcb_A           94 EC   95 (142)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.53  E-value=5.1e-07  Score=59.91  Aligned_cols=73  Identities=8%  Similarity=0.057  Sum_probs=41.4

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      +.|..+.+..   +..++++.+++.++.+ |   ...+.++.+|..++++|+|++|+.+++.+++++|+|..+.-..-.+
T Consensus         9 ~~g~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            9 LEGKEYFTKS---DWPNAVKAYTEMIKRA-P---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4444444433   3345666666666655 4   3456666666666666666666666666666666666554444333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.50  E-value=2.1e-06  Score=52.96  Aligned_cols=75  Identities=12%  Similarity=0.257  Sum_probs=62.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .++.|..+.+..   +..+++..++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++.+|++.++.....
T Consensus        12 ~~~la~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A           12 WYNLGNAYYKQG---DYDEAIEYYQKALELD-P---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcc---CHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            356677776654   5568999999999888 6   56889999999999999999999999999999999988876544


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus        85 ~~   86 (91)
T 1na3_A           85 NA   86 (91)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.50  E-value=1.6e-06  Score=58.90  Aligned_cols=76  Identities=8%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|+.|..+.+..+   ..+++..++..++.+ |   ...+.++.+|..+.++|+|++|+.+++..++++|++.++....-
T Consensus        20 ~~~~g~~~~~~g~---~~~A~~~~~~al~~~-P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           20 PMEEGLSMLKLAN---LAEAALAFEAVCQKE-P---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4778888887664   558999999999998 7   67999999999999999999999999999999999998876554


Q ss_pred             HHH
Q psy16295         83 IVK   85 (128)
Q Consensus        83 ~Ie   85 (128)
                      .+-
T Consensus        93 ~~~   95 (121)
T 1hxi_A           93 VSH   95 (121)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.48  E-value=7.2e-07  Score=62.62  Aligned_cols=71  Identities=7%  Similarity=0.138  Sum_probs=42.5

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      +++|..+.+..+   ..+++..++..+..+ |   ...+.++.+|..+.++|+|++|+.+++.+++++|+|..+.--.
T Consensus        25 ~~~g~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l   95 (148)
T 2vgx_A           25 YSLAFNQYQSGX---YEDAHXVFQALCVLD-H---YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA   95 (148)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred             HHHHHHHHHcCC---hHHHHHHHHHHHHcC-c---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence            455555555443   335666666666665 4   4566666666666666666666666666666666666554433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.48  E-value=1.5e-06  Score=54.92  Aligned_cols=74  Identities=8%  Similarity=0.026  Sum_probs=43.4

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      |+.|..+....   +..+++..++..+..+ |   ...+.++.+|..++++|+|++|..+++..++.+|++.++....-.
T Consensus         8 ~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            8 KEKGNKALSVG---NIDDALQCYSEAIKLD-P---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcc---cHHHHHHHHHHHHHHC-C---CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            44555555443   3345666666666655 4   345666666666666666666666666666666666655444433


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus        81 ~   81 (118)
T 1elw_A           81 A   81 (118)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=1.7e-06  Score=57.34  Aligned_cols=60  Identities=10%  Similarity=0.072  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295         20 RKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus        20 ~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      .++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++++|+|..+......
T Consensus        82 ~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (148)
T 2dba_A           82 DKAETEASKAIEKD-G---GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN  141 (148)
T ss_dssp             HHHHHHHHHHHHHT-S---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC-c---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence            34555555555544 3   235555555555555555555555555555555555555444433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.44  E-value=3.2e-06  Score=54.15  Aligned_cols=54  Identities=11%  Similarity=0.263  Sum_probs=25.8

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ++++.++..+..+ |   ...+.++.+|..++++|+|++|+.+++..++.+|++..+.
T Consensus        30 ~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A           30 AAVHFYGKAIELN-P---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHcC-C---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence            4444454444444 3   2344444555555555555555555555555555544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.43  E-value=4.5e-06  Score=53.13  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      -++.|.++.+..   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++..++++|+|
T Consensus         7 ~~~~g~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A            7 QKEQGNSLFKQG---LYREAVHCYDQLITAQ-P---QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHTTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            356666666554   5568999999999988 6   568999999999999999999999999999999998

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.41  E-value=2.1e-06  Score=58.75  Aligned_cols=79  Identities=6%  Similarity=-0.006  Sum_probs=68.1

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++++.++.+..   +..+++..++..+..+ |   ...+.+|.+|..+.++|+|++|+.+++..+++.|+|++...++..
T Consensus        56 ~~lg~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A           56 LGLGACRQSLG---LYEQALQSYSYGALMD-I---NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred             HHHHHHHHHHh---hHHHHHHHHHHHHhcC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            56677776655   4568999999999998 6   578899999999999999999999999999999999999988888


Q ss_pred             HHHHHh
Q psy16295         84 VKKRME   89 (128)
Q Consensus        84 Ie~~i~   89 (128)
                      +...+.
T Consensus       129 ~~~~l~  134 (142)
T 2xcb_A          129 AGAMLE  134 (142)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            876654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.41  E-value=3.1e-06  Score=60.50  Aligned_cols=80  Identities=14%  Similarity=0.246  Sum_probs=68.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|.++.+..   +..+++..++..++.+ |   ...+.+|.+|..++++|+|++|+.+++.+++++|+|..+.....
T Consensus        91 ~~~la~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  163 (198)
T 2fbn_A           91 NLNLATCYNKNK---DYPKAIDHASKVLKID-K---NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE  163 (198)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            356777777654   4568999999999888 6   57899999999999999999999999999999999999998888


Q ss_pred             HHHHHHh
Q psy16295         83 IVKKRME   89 (128)
Q Consensus        83 ~Ie~~i~   89 (128)
                      .+..++.
T Consensus       164 ~~~~~~~  170 (198)
T 2fbn_A          164 LCVNKLK  170 (198)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.40  E-value=1.7e-06  Score=60.17  Aligned_cols=66  Identities=11%  Similarity=0.012  Sum_probs=38.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      +++|+++.+..   +..++++.++..++.+ |   ...+.+|.+|..++++|+|++|+.+++..|+++|+|..
T Consensus        49 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           49 SNRAAAYSASG---QHEKAAEDAELATVVD-P---KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            44555555543   2345666666666655 4   34566666666666666666666666666666666655

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.38  E-value=3.2e-06  Score=54.79  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=45.5

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.|..+.+..+   ..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++.+|++.++....-.
T Consensus        20 ~~~~~~~~~~~~---~~~A~~~~~~al~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           20 KNKGNECFQKGD---YPQAMKHYTEAIKRN-P---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHTTC---SHHHHHHHHHHHTTC-T---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHcC-C---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            455555554443   345666666666665 4   346666777777777777777777777777777766665544444


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus        93 ~   93 (133)
T 2lni_A           93 A   93 (133)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.38  E-value=2.3e-06  Score=59.66  Aligned_cols=83  Identities=7%  Similarity=0.061  Sum_probs=65.0

Q ss_pred             HHHHHHH-HhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          3 QFNYSFC-LVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         3 ~F~YAwa-Lv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      .+++|.+ .....+. ...+++..++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++.+|+|.....+.
T Consensus        81 ~~~la~~l~~~~~~~-~~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  155 (177)
T 2e2e_A           81 YAALATVLYYQASQH-MTAQTRAMIDKALALD-S---NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV  155 (177)
T ss_dssp             HHHHHHHHHHHTTTC-CCHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred             HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            3566666 3343321 1257899999999888 6   5688999999999999999999999999999999998888888


Q ss_pred             HHHHHHHhh
Q psy16295         82 SIVKKRMET   90 (128)
Q Consensus        82 ~~Ie~~i~k   90 (128)
                      ..|+.....
T Consensus       156 ~~i~~~~~~  164 (177)
T 2e2e_A          156 ESINMAKLL  164 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888765544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.37  E-value=2.4e-06  Score=61.39  Aligned_cols=75  Identities=11%  Similarity=0.132  Sum_probs=62.8

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|++|+++.+..   +..+++..++..+..+ |   ...++++.+|..+.++|+|++|+.+++..++++|+|..+.--.-
T Consensus        39 ~~~lg~~~~~~g---~~~eA~~~~~~al~~~-P---~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg  111 (151)
T 3gyz_A           39 IYSYAYDFYNKG---RIEEAEVFFRFLCIYD-F---YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG  111 (151)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            477788887765   4558999999999998 7   67899999999999999999999999999999999987765444


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus       112 ~~  113 (151)
T 3gyz_A          112 QC  113 (151)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.37  E-value=1.1e-06  Score=61.50  Aligned_cols=71  Identities=15%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         14 EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        14 ~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      ....++.++|+.++..+..+ |   .....+|.||..|+++|+|++|+++++.+|+++|+|..+....-.+-.+.
T Consensus         8 ~~~~~~e~ai~~~~~a~~~~-p---~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   78 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPSP-R---QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE   78 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCSH-H---HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHcChHHHHHHHHHHhcccC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34678889999999988887 5   56777888999999999999999999999999999998887776665444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.37  E-value=2.6e-06  Score=56.98  Aligned_cols=85  Identities=19%  Similarity=0.201  Sum_probs=65.4

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED---IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~---~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      |..+..+..-   .+..+++.-++..++...++   ...+.+++++||.+++++|+|++|+.+.+.+|+.+|+|..+..-
T Consensus         9 ~~lG~~~~~~---~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            9 FELGKVAYTE---ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHc---cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            4555555543   45668888888877642110   13578999999999999999999999999999999999999777


Q ss_pred             HHHHHHHHhhh
Q psy16295         81 ESIVKKRMETE   91 (128)
Q Consensus        81 k~~Ie~~i~kd   91 (128)
                      +..+++.+.++
T Consensus        86 ~~~~~~~~~~~   96 (104)
T 2v5f_A           86 LKYFEYIMAKE   96 (104)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            77777766554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.36  E-value=5.5e-06  Score=54.22  Aligned_cols=76  Identities=11%  Similarity=0.079  Sum_probs=61.1

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC---HHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN---SQVQ   78 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N---~QA~   78 (128)
                      +.|+.|..+....+   ..++++.++..++.. |+.....+.+|.+|..++++|+|++|+.+++.+++..|++   ..+.
T Consensus         4 ~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (129)
T 2xev_A            4 TAYNVAFDALKNGK---YDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGL   79 (129)
T ss_dssp             CHHHHHHHHHHTTC---HHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             HHHHHHHHHHHhCC---HHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence            35788888887664   568999999999887 5212334899999999999999999999999999999999   4444


Q ss_pred             HHH
Q psy16295         79 HLE   81 (128)
Q Consensus        79 ~Lk   81 (128)
                      -..
T Consensus        80 ~~l   82 (129)
T 2xev_A           80 LKL   82 (129)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.35  E-value=7.6e-06  Score=51.90  Aligned_cols=68  Identities=13%  Similarity=0.309  Sum_probs=39.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ++.|.++.+..   +..++++++++.++.. |   ...+.++.+|..+++.|+|++|+.+++.+++..|++.++.
T Consensus        13 ~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A           13 YNLGNAYYKQG---DYDEAIEYYQKALELD-P---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHHC-c---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence            34444444433   3345666666666555 3   3455666666666666666666666666666666665544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=5.2e-06  Score=54.92  Aligned_cols=77  Identities=14%  Similarity=0.116  Sum_probs=67.3

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC------CCCHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE------SENSQVQ   78 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e------P~N~QA~   78 (128)
                      ++|.++.+..   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++++      |+|..+.
T Consensus        43 ~~a~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~  115 (126)
T 3upv_A           43 NRAAALAKLM---SFPEAIADCNKAIEKD-P---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID  115 (126)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred             HHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHH
Confidence            5566666654   5668999999999998 6   578999999999999999999999999999999      9999999


Q ss_pred             HHHHHHHHHH
Q psy16295         79 HLESIVKKRM   88 (128)
Q Consensus        79 ~Lk~~Ie~~i   88 (128)
                      .....+..++
T Consensus       116 ~~l~~~~~~l  125 (126)
T 3upv_A          116 QLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9888887765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.31  E-value=6.3e-06  Score=57.58  Aligned_cols=76  Identities=8%  Similarity=0.090  Sum_probs=58.3

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      +.|++|....+..   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++..++++|+|..+..-.
T Consensus        33 ~~~~la~~y~~~~---~~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  105 (150)
T 4ga2_A           33 KGFYFAKLYYEAK---EYDLAKKYICTYINVQ-E---RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKI  105 (150)
T ss_dssp             THHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3566777766654   4557888888888888 6   5788888888888888888888888888888888887765444


Q ss_pred             HHH
Q psy16295         82 SIV   84 (128)
Q Consensus        82 ~~I   84 (128)
                      -.+
T Consensus       106 a~~  108 (150)
T 4ga2_A          106 AEL  108 (150)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.30  E-value=5.1e-06  Score=58.22  Aligned_cols=79  Identities=9%  Similarity=-0.018  Sum_probs=67.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|.++....   +..++++.++..+.-+ |   ...+.+|.+|..+..+|+|++|+.+++..+++.|+|++...+++.
T Consensus        59 ~~lg~~~~~~g---~~~~A~~~~~~al~l~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A           59 LGLGACRQAMG---QYDLAIHSYSYGAVMD-I---XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHHHh---hHHHHHHHHHHHHhcC-C---CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence            56677776655   4558999999999988 6   578999999999999999999999999999999999999888887


Q ss_pred             HHHHHh
Q psy16295         84 VKKRME   89 (128)
Q Consensus        84 Ie~~i~   89 (128)
                      ++..+.
T Consensus       132 ~~~~l~  137 (148)
T 2vgx_A          132 VSSMLE  137 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.29  E-value=9.8e-06  Score=51.06  Aligned_cols=76  Identities=12%  Similarity=-0.024  Sum_probs=64.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|.++.+.   .+..+++..++..++.+ |   ...+.++.+|..+.++|+|++|+.+++..++.+|++..+......
T Consensus        42 ~~~a~~~~~~---~~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  114 (118)
T 1elw_A           42 SNRSAAYAKK---GDYQKAYEDGCKTVDLK-P---DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  114 (118)
T ss_dssp             HHHHHHHHHH---TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhh---ccHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            4566666654   45678999999999988 6   568999999999999999999999999999999999988877666


Q ss_pred             HHH
Q psy16295         84 VKK   86 (128)
Q Consensus        84 Ie~   86 (128)
                      +.+
T Consensus       115 ~~~  117 (118)
T 1elw_A          115 MEA  117 (118)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.29  E-value=5.7e-06  Score=66.94  Aligned_cols=80  Identities=20%  Similarity=0.232  Sum_probs=69.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      -+++|+++.+..+   ..++++.++..++.+ |   ...+.+|.+|.+++++|+|++|+.+++..|+++|+|..+.....
T Consensus       276 ~~nla~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~  348 (370)
T 1ihg_A          276 VLNIGACKLKMSD---WQGAVDSCLEALEID-P---SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  348 (370)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHTTC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccC---HHHHHHHHHHHHHhC-c---hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4688888887664   558999999999988 6   57899999999999999999999999999999999999988877


Q ss_pred             HHHHHHh
Q psy16295         83 IVKKRME   89 (128)
Q Consensus        83 ~Ie~~i~   89 (128)
                      .+..++.
T Consensus       349 ~~~~~~~  355 (370)
T 1ihg_A          349 KVKQKIK  355 (370)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.29  E-value=1.8e-06  Score=60.32  Aligned_cols=55  Identities=15%  Similarity=0.127  Sum_probs=26.3

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      .+++.++...+.+ |   ...+.++.+|..+.++|+|++|+.+++..++++|+|.++..
T Consensus        91 ~a~~~~~~a~~~~-~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~  145 (184)
T 3vtx_A           91 AAIDALQRAIALN-T---VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQ  145 (184)
T ss_dssp             HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHhC-c---cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHH
Confidence            3444444444444 3   33444555555555555555555555555555555544433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.28  E-value=1.4e-06  Score=57.09  Aligned_cols=71  Identities=14%  Similarity=0.230  Sum_probs=59.3

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      +.|++|.++....   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++..+++.|++.....
T Consensus         9 ~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            9 TRYALAQEHLKHD---NASRALALFEELVETD-P---DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            3577888888765   4568999999999998 6   57889999999999999999999999999999876544443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.27  E-value=7.4e-06  Score=56.86  Aligned_cols=78  Identities=10%  Similarity=0.021  Sum_probs=65.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      -++.|..+.+..   +..++++.++..++.+ |   ...++++.+|..++++|+|++|+.+++..++++|+|..+....-
T Consensus        14 ~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A           14 LKSEGNAAMARK---EYSKAIDLYTQALSIA-P---ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            356677777654   5568999999999998 6   57899999999999999999999999999999999988876665


Q ss_pred             HHHHH
Q psy16295         83 IVKKR   87 (128)
Q Consensus        83 ~Ie~~   87 (128)
                      .+-.+
T Consensus        87 ~~~~~   91 (164)
T 3sz7_A           87 LARFD   91 (164)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55433

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.26  E-value=4.5e-06  Score=62.33  Aligned_cols=81  Identities=10%  Similarity=0.161  Sum_probs=67.8

Q ss_pred             HHHHHHHhccCCh-------hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-----------chHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFC-------ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-----------EYTKSLKYCR   65 (128)
Q Consensus         4 F~YAwaLv~S~~~-------~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-----------dY~~A~~~~~   65 (128)
                      ++++-+|......       +.+.++|..|++-++-+ |   ...|.+|.++.+++.+|           +|++|+.+++
T Consensus        40 ~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P---~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           40 TRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-P---KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-c---CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence            4566666655432       35779999999999999 7   68999999999999985           9999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         66 AFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        66 ~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      ..|+++|+|...+.-.+++++.-
T Consensus       116 kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A          116 QAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHhCH
Confidence            99999999998888888777654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.25  E-value=6.2e-06  Score=54.52  Aligned_cols=76  Identities=9%  Similarity=0.071  Sum_probs=56.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.|..+.+..+   ..+++..++..+..+ |   ...+.++.+|..++++|+|++|+.+++.+++.+|++.++....-.
T Consensus        13 ~~~g~~~~~~~~---~~~A~~~~~~al~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B           13 KEQGNRLFVGRK---YPEAAACYGRAITRN-P---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCc---HHHHHHHHHHHHhhC-c---CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            556666665543   457888888888777 5   467788888888888888888888888888888888877666555


Q ss_pred             HHH
Q psy16295         84 VKK   86 (128)
Q Consensus        84 Ie~   86 (128)
                      +-.
T Consensus        86 ~~~   88 (137)
T 3q49_B           86 CQL   88 (137)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.25  E-value=1.1e-05  Score=60.06  Aligned_cols=80  Identities=13%  Similarity=0.132  Sum_probs=66.5

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|+++.+..   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++++|+|.++......
T Consensus       276 ~~la~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~  348 (359)
T 3ieg_A          276 ERICHCFSKDE---KPVEAIRICSEVLQME-P---DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK  348 (359)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            34666776655   4568999999999887 6   568899999999999999999999999999999999999888777


Q ss_pred             HHHHHhh
Q psy16295         84 VKKRMET   90 (128)
Q Consensus        84 Ie~~i~k   90 (128)
                      +...+.+
T Consensus       349 ~~~~~~~  355 (359)
T 3ieg_A          349 AQRLLKQ  355 (359)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.24  E-value=8.7e-06  Score=64.28  Aligned_cols=80  Identities=9%  Similarity=0.191  Sum_probs=69.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|.++.+..+   ..++++.++..++.+ |   ...+.+|.+|.+++++|+|++|+.+++.+|+++|+|..+.....
T Consensus       199 ~~nla~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  271 (336)
T 1p5q_A          199 HLNLAMCHLKLQA---FSAAIESCNKALELD-S---NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA  271 (336)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            4678888888764   558999999999998 6   57899999999999999999999999999999999999888777


Q ss_pred             HHHHHHh
Q psy16295         83 IVKKRME   89 (128)
Q Consensus        83 ~Ie~~i~   89 (128)
                      .+..++.
T Consensus       272 ~~~~~~~  278 (336)
T 1p5q_A          272 VCQQRIR  278 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7765543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.24  E-value=1.2e-05  Score=51.46  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccc----hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDR----KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~----~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      .+++|.++.+..   +..+++..++..+... |+...    ..++++.+|..++++|+|++|+.+++..++..| +....
T Consensus        41 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  115 (131)
T 1elr_A           41 ITNQAAVYFEKG---DYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVL  115 (131)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHH
T ss_pred             HHHHHHHHHHhc---cHHHHHHHHHHHHhhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHH
Confidence            456677776654   4567888888888776 41001    178999999999999999999999999999999 57666


Q ss_pred             HHHHHHHHHHh
Q psy16295         79 HLESIVKKRME   89 (128)
Q Consensus        79 ~Lk~~Ie~~i~   89 (128)
                      .....+...+.
T Consensus       116 ~~l~~~~~~~~  126 (131)
T 1elr_A          116 KKCQQAEKILK  126 (131)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66555555544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.23  E-value=1.2e-05  Score=53.17  Aligned_cols=77  Identities=10%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC-----CHHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE-----NSQVQH   79 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~-----N~QA~~   79 (128)
                      ++|.++.+..   +..+++..++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++++|+     +.....
T Consensus        48 ~l~~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  120 (137)
T 3q49_B           48 NRALCYLKMQ---QPEQALADCRRALELD-G---QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPS  120 (137)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHH
T ss_pred             HHHHHHHHhc---CHHHHHHHHHHHHHhC-c---hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHH
Confidence            4566666654   4558999999999988 6   57889999999999999999999999999999999     777776


Q ss_pred             HHHHHHHHH
Q psy16295         80 LESIVKKRM   88 (128)
Q Consensus        80 Lk~~Ie~~i   88 (128)
                      ....++.+.
T Consensus       121 ~l~~~~~~~  129 (137)
T 3q49_B          121 ALRIAKKKR  129 (137)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.22  E-value=6.3e-06  Score=56.37  Aligned_cols=74  Identities=12%  Similarity=0.112  Sum_probs=61.2

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      +.+..+.+..   +..++|+.+++.++.+ |   ...+.++.+|..++++|+|++|+.+++..++++|+|..+...+-.+
T Consensus        18 ~~G~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~   90 (126)
T 4gco_A           18 NKGNEYFKKG---DYPTAMRHYNEAVKRD-P---ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence            4444555543   5678999999999998 6   6789999999999999999999999999999999998876555444


Q ss_pred             H
Q psy16295         85 K   85 (128)
Q Consensus        85 e   85 (128)
                      -
T Consensus        91 ~   91 (126)
T 4gco_A           91 L   91 (126)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.21  E-value=1.9e-05  Score=49.38  Aligned_cols=75  Identities=9%  Similarity=0.146  Sum_probs=61.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC--CHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE--NSQVQHL   80 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~--N~QA~~L   80 (128)
                      .++.|..+.+..   +..+++..++..++.+ |   ...+.++.+|..++++|+|++|+.+++..++..|+  +.++...
T Consensus         9 ~~~~~~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            9 YYLEGVLQYDAG---NYTESIDLFEKAIQLD-P---EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             GGGHHHHHHSSC---CHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             HHHHHHHHHHhh---hHHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            356677776654   4568999999999888 5   56889999999999999999999999999999999  8776554


Q ss_pred             HHHH
Q psy16295         81 ESIV   84 (128)
Q Consensus        81 k~~I   84 (128)
                      ...+
T Consensus        82 l~~~   85 (112)
T 2kck_A           82 KADA   85 (112)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.21  E-value=3.3e-06  Score=55.39  Aligned_cols=68  Identities=9%  Similarity=0.002  Sum_probs=46.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      .+++|.++.+..+   ..+++..++..++.+ |   ...+.++.+|..+.++|+|++|+.+++..+++.|++...
T Consensus        22 ~~~lg~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~   89 (115)
T 2kat_A           22 RFTLGKTYAEHEQ---FDAALPHLRAALDFD-P---TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ   89 (115)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHccC---HHHHHHHHHHHHHHC-C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccH
Confidence            3566666665543   446777777777776 5   456777777777888888888888888777777755433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.21  E-value=2.3e-05  Score=52.72  Aligned_cols=69  Identities=12%  Similarity=0.160  Sum_probs=38.4

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      ++|.++.+..   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++..|++..+...
T Consensus        52 ~~a~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  120 (166)
T 1a17_A           52 NRSLAYLRTE---CYGYALGDATRAIELD-K---KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK  120 (166)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3444444433   3345566666655555 3   345566666666666666666666666666666666555433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.20  E-value=6.7e-06  Score=67.78  Aligned_cols=81  Identities=12%  Similarity=0.208  Sum_probs=66.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+|+|+++.+..+   ..+++..++..++.+ |   ...+.+|.+|.+++++|+|++|+.+++.+|+++|+|.++.....
T Consensus       320 ~~nla~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~  392 (457)
T 1kt0_A          320 FLNLAMCYLKLRE---YTKAVECCDKALGLD-S---ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS  392 (457)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred             HHHHHHHHHHhcC---HHHHHHHHHHHHhcC-C---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4688899888764   558999999999998 6   57899999999999999999999999999999999999988887


Q ss_pred             HHHHHHhh
Q psy16295         83 IVKKRMET   90 (128)
Q Consensus        83 ~Ie~~i~k   90 (128)
                      .+..++.+
T Consensus       393 ~~~~~~~~  400 (457)
T 1kt0_A          393 MCQKKAKE  400 (457)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77766543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.19  E-value=1.7e-05  Score=51.29  Aligned_cols=75  Identities=16%  Similarity=0.109  Sum_probs=62.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|.++....   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+++++..++.+|++.++......
T Consensus        54 ~~la~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  126 (133)
T 2lni_A           54 SNRAACYTKLL---EFQLALKDCEECIQLE-P---TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR  126 (133)
T ss_dssp             HHHHHHHTTTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred             HHHHHHHHHhc---cHHHHHHHHHHHHHhC-C---CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            56666665544   5668999999999987 5   578899999999999999999999999999999999887766555


Q ss_pred             HH
Q psy16295         84 VK   85 (128)
Q Consensus        84 Ie   85 (128)
                      +.
T Consensus       127 ~~  128 (133)
T 2lni_A          127 CM  128 (133)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.19  E-value=8.4e-06  Score=58.46  Aligned_cols=74  Identities=9%  Similarity=0.050  Sum_probs=60.8

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      -++++.++.+..   +..++++.++..++-+ |   ...+.+|.+|.++.++|+|++|+.+++..+++.|+.+....-++
T Consensus        73 ~~~lg~~~~~~g---~~~~Ai~~~~~al~l~-P---~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~~~~~A~~  145 (151)
T 3gyz_A           73 IMGLAAIYQIKE---QFQQAADLYAVAFALG-K---NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQS  145 (151)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-S---SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---cHHHHHHHHHHHHhhC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            356677776655   4558999999999998 7   57899999999999999999999999999999999874443333


Q ss_pred             H
Q psy16295         83 I   83 (128)
Q Consensus        83 ~   83 (128)
                      +
T Consensus       146 l  146 (151)
T 3gyz_A          146 Y  146 (151)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.18  E-value=1.9e-05  Score=58.42  Aligned_cols=78  Identities=14%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh----------hchHHHHHHHHHHHhcCCC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI----------KEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl----------gdY~~A~~~~~~lL~~eP~   73 (128)
                      |+.|+++.+..   +..+++..++.+++.. |+.....+.+|.++..++++          |+|++|+.+++.+++..|+
T Consensus       152 ~~la~~~~~~g---~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          152 YEAARLYERRE---LYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence            77788887765   4568999999999887 63234789999999999988          9999999999999999999


Q ss_pred             CHHHHHHHHHHH
Q psy16295         74 NSQVQHLESIVK   85 (128)
Q Consensus        74 N~QA~~Lk~~Ie   85 (128)
                      ++.+..-...+.
T Consensus       228 ~~~~~~a~~~l~  239 (261)
T 3qky_A          228 SPLLRTAEELYT  239 (261)
T ss_dssp             CTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHH
Confidence            965554444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.17  E-value=6.8e-06  Score=55.69  Aligned_cols=67  Identities=15%  Similarity=0.085  Sum_probs=52.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      .+++|.++.+..+   ..+++..++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++.+|++.+
T Consensus        54 ~~~lg~~~~~~g~---~~~A~~~~~~al~l~-P---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           54 WRSLGLTQAENEK---DGLAIIALNHARMLD-P---KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            4667777776654   558999999999998 7   57889999999999999999999999999999999865

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.17  E-value=2e-05  Score=57.75  Aligned_cols=80  Identities=14%  Similarity=0.123  Sum_probs=68.0

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ..++++.++.+..+   ..+++..++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++.+|+|..+....
T Consensus         7 ~~~~lg~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l   79 (217)
T 2pl2_A            7 NPLRLGVQLYALGR---YDAALTLFERALKEN-P---QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL   79 (217)
T ss_dssp             HHHHHHHHHHHTTC---HHHHHHHHHHHHTTS-S---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            35778888888765   558999999999998 7   6899999999999999999999999999999999999887665


Q ss_pred             HHHHHHH
Q psy16295         82 SIVKKRM   88 (128)
Q Consensus        82 ~~Ie~~i   88 (128)
                      -.+-.+.
T Consensus        80 g~~~~~~   86 (217)
T 2pl2_A           80 SEAYVAL   86 (217)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5554433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.15  E-value=1.5e-05  Score=58.00  Aligned_cols=72  Identities=15%  Similarity=0.176  Sum_probs=62.4

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295          6 YSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus         6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      +|.++.+..   +..+++..++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+|+++|+|..+..-.-.+
T Consensus        60 lg~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~  131 (208)
T 3urz_A           60 LALAYKKNR---NYDKAYLFYKELLQKA-P---NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNY  131 (208)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            677777654   5568999999999998 7   6789999999999999999999999999999999999887655443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.14  E-value=3.7e-05  Score=50.69  Aligned_cols=78  Identities=8%  Similarity=0.008  Sum_probs=61.4

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +..|..+....   +..++++.++..++.+ |+.....+.++.+|..++++|+|++|+.+++..++.+|++.++....-.
T Consensus        32 ~~~a~~~~~~~---~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           32 RKEGNELFKCG---DYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHTTT---CHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            45566666544   5668999999999987 5211238999999999999999999999999999999999877655544


Q ss_pred             HH
Q psy16295         84 VK   85 (128)
Q Consensus        84 Ie   85 (128)
                      +-
T Consensus       108 ~~  109 (148)
T 2dba_A          108 AL  109 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.10  E-value=2.6e-05  Score=56.74  Aligned_cols=74  Identities=9%  Similarity=0.222  Sum_probs=63.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHH----------------HHHHHhhhhchHHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYY----------------LAIGNARIKEYTKSLKYCRAF   67 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYy----------------LAvg~yklgdY~~A~~~~~~l   67 (128)
                      |.-|..+....   +..+++..++..++.+ |   ...+.+|+                +|..+.++|+|++|+.+++..
T Consensus         8 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            8 LQKVSAAIEAG---QNGQAVSYFRQTIALN-I---DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-H---HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            55666666554   5568999999999998 7   67889999                999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHH
Q psy16295         68 LAIESENSQVQHLESIV   84 (128)
Q Consensus        68 L~~eP~N~QA~~Lk~~I   84 (128)
                      |+++|+|..+....-.+
T Consensus        81 l~~~p~~~~~~~~lg~~   97 (208)
T 3urz_A           81 LQKAPNNVDCLEACAEM   97 (208)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHH
Confidence            99999999887665554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.09  E-value=5.1e-06  Score=65.80  Aligned_cols=79  Identities=11%  Similarity=0.176  Sum_probs=52.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|.++.+..+   ..+++..++..++.+ |   ...+.+|.+|.+++++|+|++|+.+++.+|+++|+|..+.....
T Consensus       233 ~~nla~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~  305 (338)
T 2if4_A          233 HLNIAACLIKLKR---YDEAIGHCNIVLTEE-E---KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR  305 (338)
T ss_dssp             HHHHHHHHHTTTC---CHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            4678888877654   457999999999988 6   57899999999999999999999999999999999999988777


Q ss_pred             HHHHHH
Q psy16295         83 IVKKRM   88 (128)
Q Consensus        83 ~Ie~~i   88 (128)
                      .+..+.
T Consensus       306 ~l~~~~  311 (338)
T 2if4_A          306 ALAEQE  311 (338)
T ss_dssp             ------
T ss_pred             HHHHHH
Confidence            664433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.09  E-value=5e-06  Score=60.56  Aligned_cols=85  Identities=11%  Similarity=-0.019  Sum_probs=55.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccC--cc--ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--ED--IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~--~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      ++.+.++....+..+..+++..+++.++...  |+  .....++++.+|..+.+.|+|++|+.+++..|+++|+|.+|+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~  259 (272)
T 3u4t_A          180 LWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAID  259 (272)
T ss_dssp             HHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHH
Confidence            4556666655543333345555555444320  20  0113479999999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q psy16295         80 LESIVKKRM   88 (128)
Q Consensus        80 Lk~~Ie~~i   88 (128)
                      ....+....
T Consensus       260 ~l~~~~~~~  268 (272)
T 3u4t_A          260 GLKMKLEHH  268 (272)
T ss_dssp             HHC------
T ss_pred             Hhhhhhccc
Confidence            887776544

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.07  E-value=5.4e-05  Score=55.92  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      .|+.|..+.+..   +..++++.++.+++.. |+.....+.+|.+|..++++|+|++|+.+++.+++..|+++.
T Consensus        18 ~~~~a~~~~~~g---~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A           18 AFERAMEFYNQG---KYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHhC---CHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            578888888765   4568999999999987 631233899999999999999999999999999999997754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.06  E-value=5.5e-05  Score=48.18  Aligned_cols=78  Identities=8%  Similarity=0.112  Sum_probs=64.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|+++.+..   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++..|++..+......
T Consensus        50 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~  122 (131)
T 2vyi_A           50 CNRAAAYSKLG---NYAGAVQDCERAICID-P---AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI  122 (131)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhh---chHHHHHHHHHHHhcC-c---cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            56677777655   4568999999999887 6   568899999999999999999999999999999999988766655


Q ss_pred             HHHHH
Q psy16295         84 VKKRM   88 (128)
Q Consensus        84 Ie~~i   88 (128)
                      +..++
T Consensus       123 ~~~~~  127 (131)
T 2vyi_A          123 AELKL  127 (131)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.05  E-value=5.7e-05  Score=47.72  Aligned_cols=75  Identities=13%  Similarity=0.283  Sum_probs=62.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|.++.+..   +..+++..++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++..|++.++......
T Consensus        47 ~~la~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  119 (125)
T 1na0_A           47 YNLGNAYYKQG---DYDEAIEYYQKALELD-P---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN  119 (125)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhC---CHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            56677776654   4568999999999887 5   567899999999999999999999999999999999988766554


Q ss_pred             HH
Q psy16295         84 VK   85 (128)
Q Consensus        84 Ie   85 (128)
                      +.
T Consensus       120 ~~  121 (125)
T 1na0_A          120 AK  121 (125)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.04  E-value=8.8e-06  Score=53.88  Aligned_cols=68  Identities=9%  Similarity=0.007  Sum_probs=55.2

Q ss_pred             hhHHHHHHHHHHHhhcc--CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTE--TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~--~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~   87 (128)
                      .+..+++..++..++.+  .|   ...+.++.+|..++++|+|++|+.+++..++.+|+|..+....-.+-.+
T Consensus         4 g~~~~A~~~~~~al~~~~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~   73 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGK---DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN   73 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCc---cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            34557899999999883  25   6789999999999999999999999999999999998877665555433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.03  E-value=2.2e-05  Score=54.27  Aligned_cols=76  Identities=9%  Similarity=0.058  Sum_probs=57.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhc------------------cCccccchHHHHHHHHHHHhhhhchHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKT------------------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCR   65 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~------------------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~   65 (128)
                      ++.+..+.+..   +..+++..++..+.-                  + |   ...++++.+|.+++++|+|++|+.+++
T Consensus        15 ~~~G~~~~~~~---~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A           15 RQKGNELFVQK---DYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-R---KNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-H---THHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-H---HHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34555555544   445677777766665                  3 3   567899999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHH
Q psy16295         66 AFLAIESENSQVQHLESIVKK   86 (128)
Q Consensus        66 ~lL~~eP~N~QA~~Lk~~Ie~   86 (128)
                      .+|+++|+|..+.-.+-.+-.
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~  108 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARI  108 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHH
Confidence            999999999988766555543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.03  E-value=2.2e-05  Score=49.10  Aligned_cols=66  Identities=9%  Similarity=-0.124  Sum_probs=57.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccc--hHHHHHHHHHHHhhh-hchHHHHHHHHHHHhcCCCCH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDR--KRDYLYYLAIGNARI-KEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~--~rd~LYyLAvg~ykl-gdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+++|.++.+..+   ..++++.++..++.+ |   .  ..+.++.+|..+.++ |+|++|+++++.+++..|++.
T Consensus        43 ~~~~a~~~~~~~~---~~~A~~~~~~a~~~~-~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           43 WLMKGKALYNLER---YEEAVDCYNYVINVI-E---DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHTS-C---CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHccC---HHHHHHHHHHHHHhC-c---ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            4677777777654   568999999999887 5   5  789999999999999 999999999999999999864

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.00  E-value=3.2e-05  Score=55.76  Aligned_cols=77  Identities=14%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccc--hHHHHHHHHHHHhhhhch------------------------
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDR--KRDYLYYLAIGNARIKEY------------------------   57 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~--~rd~LYyLAvg~yklgdY------------------------   57 (128)
                      ++.+.++...   .+..++++.++..++.+ |   .  ..+.++.++..++.+|+.                        
T Consensus       121 ~~~g~~~~~~---~~~~~A~~~~~~al~~~-p---~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  193 (228)
T 4i17_A          121 LKEGQKFQQA---GNIEKAEENYKHATDVT-S---KKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKAD  193 (228)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHTTSS-C---HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHh---ccHHHHHHHHHHHHhcC-C---CcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            3445555443   45678999999999988 6   6  789999999999999999                        


Q ss_pred             ---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295         58 ---TKSLKYCRAFLAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        58 ---~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~   87 (128)
                         ++|+.+++..++++|+|..+..+...|+..
T Consensus       194 ~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~  226 (228)
T 4i17_A          194 AAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM  226 (228)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence               999999999999999999999988877654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.98  E-value=7.2e-05  Score=50.19  Aligned_cols=74  Identities=8%  Similarity=0.042  Sum_probs=62.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.|+.+....   +..+++..++..+..+ |   ...+.++.+|..++++|+|++|+.+++..++.+|++.++....-.
T Consensus        17 ~~~a~~~~~~~---~~~~A~~~~~~al~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           17 KTQANDYFKAK---DYENAIKFYSQAIELN-P---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHHHhC-C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            55666666654   5668999999999988 6   568999999999999999999999999999999999887655554


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus        90 ~   90 (166)
T 1a17_A           90 S   90 (166)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.96  E-value=2.2e-05  Score=55.86  Aligned_cols=54  Identities=9%  Similarity=0.083  Sum_probs=27.6

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ++++.+++.++.. |   ...+.++.+|..+++.|+|++|+.+++.+++..|++..+.
T Consensus       143 ~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  196 (243)
T 2q7f_A          143 LALPYLQRAVELN-E---NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAF  196 (243)
T ss_dssp             HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            4555555555444 3   2344555555555555555555555555555555554443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.96  E-value=6e-05  Score=55.15  Aligned_cols=75  Identities=7%  Similarity=0.029  Sum_probs=65.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh-----------hchHHHHHHHHHHHhcC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI-----------KEYTKSLKYCRAFLAIE   71 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl-----------gdY~~A~~~~~~lL~~e   71 (128)
                      .+++|.++.+..+   ..+++..++..++.+ |   ...+.++.++..+.++           |+|++|+..++..++.+
T Consensus        42 ~~~lg~~~~~~g~---~~~A~~~~~~al~~~-P---~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  114 (217)
T 2pl2_A           42 LYWLARTQLKLGL---VNPALENGKTLVART-P---RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN  114 (217)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC
Confidence            4677888877654   458999999999998 7   6789999999999999           99999999999999999


Q ss_pred             CCCHHHHHHHHHH
Q psy16295         72 SENSQVQHLESIV   84 (128)
Q Consensus        72 P~N~QA~~Lk~~I   84 (128)
                      |++.++....-.+
T Consensus       115 P~~~~~~~~lg~~  127 (217)
T 2pl2_A          115 PRYAPLHLQRGLV  127 (217)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHH
Confidence            9999887665544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.96  E-value=4.3e-05  Score=55.97  Aligned_cols=70  Identities=10%  Similarity=0.032  Sum_probs=58.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      .|+.|..+....   +..+++..|+.+++.. |+.....+.+|.+|..++++|+|++|+..++.+++..|++..
T Consensus         7 ~~~~a~~~~~~g---~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A            7 IYATAQQKLQDG---NWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            467777777754   5668999999999886 522245789999999999999999999999999999999975

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.94  E-value=0.00011  Score=57.29  Aligned_cols=80  Identities=11%  Similarity=0.121  Sum_probs=65.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++++++.+..   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++++|+|..+......
T Consensus       299 ~~l~~~~~~~g---~~~~A~~~~~~a~~~~-p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  371 (450)
T 2y4t_A          299 ERICHCFSKDE---KPVEAIRVCSEVLQME-P---DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK  371 (450)
T ss_dssp             HHHHHHHHTTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            45667777655   4567899999988887 5   567999999999999999999999999999999999998888777


Q ss_pred             HHHHHhh
Q psy16295         84 VKKRMET   90 (128)
Q Consensus        84 Ie~~i~k   90 (128)
                      +.....+
T Consensus       372 ~~~~~~~  378 (450)
T 2y4t_A          372 AQRLLKQ  378 (450)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            7655543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.94  E-value=0.00013  Score=52.51  Aligned_cols=66  Identities=8%  Similarity=0.054  Sum_probs=44.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      ++.|.++.+..   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++++|+|..
T Consensus        46 ~~~~~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  111 (228)
T 4i17_A           46 YNCGVCADNIK---KYKEAADYFDIAIKKN-Y---NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNAT  111 (228)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTT-C---SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHhh---cHHHHHHHHHHHHHhC-c---chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence            44555555544   3446777777777666 5   46677777777777777777777777777777777763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.93  E-value=9.7e-05  Score=51.30  Aligned_cols=64  Identities=11%  Similarity=0.071  Sum_probs=41.5

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+|+++.+..   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+++++..|+++|+|.
T Consensus       112 ~lg~~~~~~g---~~~~A~~~~~~~l~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          112 KLGLVYDSMG---EHDKAIEAYEKTISIK-P---GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhC---CchhHHHHHHHHHHhc-c---hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            4444444433   3446777777777666 5   4566777777777777777777777777777777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.92  E-value=8.4e-05  Score=61.25  Aligned_cols=85  Identities=9%  Similarity=0.007  Sum_probs=68.6

Q ss_pred             HHHHHHHHhcc-----CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          3 QFNYSFCLVRS-----EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         3 ~F~YAwaLv~S-----~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      .+++|+++...     .++.+..++++.++..++.+ |......+.++.+|..++++|+|++|+.+++..++++|+|.++
T Consensus       216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a  294 (474)
T 4abn_A          216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP  294 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            35666666654     45588899999999999987 5111578999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHH
Q psy16295         78 QHLESIVKKRM   88 (128)
Q Consensus        78 ~~Lk~~Ie~~i   88 (128)
                      ......+...+
T Consensus       295 ~~~l~~~~~~l  305 (474)
T 4abn_A          295 QQREQQLLEFL  305 (474)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            76665555444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.92  E-value=9.3e-05  Score=51.58  Aligned_cols=71  Identities=13%  Similarity=0.082  Sum_probs=44.4

Q ss_pred             HHHHHHHhcc-CChhhHHHHHHHHHHHhh--ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          4 FNYSFCLVRS-EFCADIRKGILLLEELFK--TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         4 F~YAwaLv~S-~~~~d~~~GI~LL~~l~~--~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      +++|.++... .   +..++++.++..++  .. |   ...+.++.+|..+.+.|+|++|+.+++.+++..|++..+...
T Consensus        80 ~~l~~~~~~~~~---~~~~A~~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  152 (225)
T 2vq2_A           80 NNYGWFLCGRLN---RPAESMAYFDKALADPTY-P---TPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE  152 (225)
T ss_dssp             HHHHHHHHTTTC---CHHHHHHHHHHHHTSTTC-S---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHhcC---cHHHHHHHHHHHHcCcCC-c---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHH
Confidence            4555555554 3   34466677776666  22 2   446667777777777777777777777777777776655444


Q ss_pred             H
Q psy16295         81 E   81 (128)
Q Consensus        81 k   81 (128)
                      .
T Consensus       153 l  153 (225)
T 2vq2_A          153 L  153 (225)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.91  E-value=9.7e-05  Score=52.57  Aligned_cols=76  Identities=8%  Similarity=0.046  Sum_probs=58.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|+.+.+..   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++..++..|++.++.....
T Consensus       142 ~~~~~~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  214 (258)
T 3uq3_A          142 ARLEGKEYFTKS---DWPNAVKAYTEMIKRA-P---EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA  214 (258)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CHHHHHHHHHHHHhcC-c---ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            346666666654   4557888888888887 5   46788888999999999999999999999999998877655444


Q ss_pred             HHH
Q psy16295         83 IVK   85 (128)
Q Consensus        83 ~Ie   85 (128)
                      .+-
T Consensus       215 ~~~  217 (258)
T 3uq3_A          215 TAQ  217 (258)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.91  E-value=1.5e-05  Score=53.70  Aligned_cols=77  Identities=8%  Similarity=0.155  Sum_probs=60.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|+.+.+..   +..++++.++..++.. |   ...+.++.+|..++++|+|++|+.+++.+++..|++..+.....
T Consensus        79 ~~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la  151 (186)
T 3as5_A           79 ATVLGLTYVQVQ---KYDLAVPLLIKVAEAN-P---INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA  151 (186)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CHHHHHHHHHHHHhcC-c---HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            356677776654   4557888888888887 5   46788899999999999999999999999999999987766555


Q ss_pred             HHHH
Q psy16295         83 IVKK   86 (128)
Q Consensus        83 ~Ie~   86 (128)
                      .+-.
T Consensus       152 ~~~~  155 (186)
T 3as5_A          152 FSYE  155 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.91  E-value=6.7e-05  Score=48.94  Aligned_cols=61  Identities=15%  Similarity=0.045  Sum_probs=52.5

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      ++++.++..++.+ |   ...+.++.+|..+++.|+|++|+.+++.+++.+|++..+....-.+-
T Consensus         3 ~a~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~   63 (115)
T 2kat_A            3 AITERLEAMLAQG-T---DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL   63 (115)
T ss_dssp             CHHHHHHHHHTTT-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            4678889999888 6   56899999999999999999999999999999999988765554443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.89  E-value=5.2e-05  Score=54.00  Aligned_cols=73  Identities=15%  Similarity=0.104  Sum_probs=62.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC------CCCHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE------SENSQ   76 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e------P~N~Q   76 (128)
                      .+++|.++.+..   +..+++..++..++.+ |   ...+.++.+|..+.++|+|++|+.+++..+++.      |+|..
T Consensus       176 ~~~l~~~~~~~~---~~~~A~~~~~~al~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~  248 (258)
T 3uq3_A          176 YSNRAAALAKLM---SFPEAIADCNKAIEKD-P---NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE  248 (258)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred             HHHHHHHHHHhC---CHHHHHHHHHHHHHhC-H---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHH
Confidence            456777777765   4568999999999988 6   578999999999999999999999999999999      99988


Q ss_pred             HHHHHH
Q psy16295         77 VQHLES   82 (128)
Q Consensus        77 A~~Lk~   82 (128)
                      +..+..
T Consensus       249 ~~~~l~  254 (258)
T 3uq3_A          249 IDQLYY  254 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.85  E-value=9.4e-05  Score=46.88  Aligned_cols=74  Identities=12%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|..+....   +..+++..++..++.. |   ...+.++.++..+++.|+|++|+++++.+++..|++.++....-.
T Consensus        39 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  111 (136)
T 2fo7_A           39 YNLGNAYYKQG---DYDEAIEYYQKALELD-P---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN  111 (136)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHHHHC-C---CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            45666666554   5668999999988887 5   467889999999999999999999999999999999876655443


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus       112 ~  112 (136)
T 2fo7_A          112 A  112 (136)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.84  E-value=2.3e-05  Score=53.35  Aligned_cols=67  Identities=9%  Similarity=0.174  Sum_probs=56.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      .+.+..+.+.   .+..++|+.++..++-+ |   ...++++.+|..++++|+|++|+.+++..|+++|++...
T Consensus        12 ~~lG~~~~~~---~~~~~A~~~y~~Al~~~-p---~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A           12 KDLGNAAYKQ---KDFEKAHVHYDKAIELD-P---SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHT---TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHc---CCHHHHHHHHHHHHHhC-C---CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            3455555554   45678999999999988 7   578999999999999999999999999999999988654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.83  E-value=0.00016  Score=53.59  Aligned_cols=75  Identities=7%  Similarity=0.035  Sum_probs=56.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|..|+.+.+..   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++.+|++..+....-
T Consensus         6 ~~~~~~~~~~~g---~~~~A~~~~~~~l~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~   78 (359)
T 3ieg_A            6 HLELGKKLLAAG---QLADALSQFHAAVDGD-P---DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG   78 (359)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHhhC-c---ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            456677776655   4457888888888877 5   46788888888888888888888888888888888876655444


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus        79 ~~   80 (359)
T 3ieg_A           79 HL   80 (359)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.83  E-value=0.00019  Score=45.40  Aligned_cols=73  Identities=12%  Similarity=0.243  Sum_probs=60.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .++.|..+.+..   +..+++.++++.++.+ |   ...+.++.+|..+++.|+|++|+.+++.+++..|++..+.....
T Consensus         4 ~~~l~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~   76 (136)
T 2fo7_A            4 WYNLGNAYYKQG---DYDEAIEYYQKALELD-P---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG   76 (136)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcC---cHHHHHHHHHHHHHcC-C---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            356667766654   5668999999999887 5   46788999999999999999999999999999999987655443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.81  E-value=0.00023  Score=47.77  Aligned_cols=70  Identities=13%  Similarity=0.201  Sum_probs=43.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      +.+|.++.+..   +..++++.++..++.. |   ...++++.+|..+++.|+|++|+.+++.+++..|++..+...
T Consensus        46 ~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  115 (186)
T 3as5_A           46 LHLGIAYVKTG---AVDRGTELLERSLADA-P---DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFR  115 (186)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHH
Confidence            34455555443   3345666666666665 4   356666677777777777777777777777777776655433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.80  E-value=8.8e-05  Score=54.73  Aligned_cols=75  Identities=4%  Similarity=0.050  Sum_probs=63.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|+++.+..   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++++|+|..+.....
T Consensus       239 ~~~la~~~~~~g---~~~~A~~~~~~a~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  311 (330)
T 3hym_B          239 LNNLGHVCRKLK---KYAEALDYHRQALVLI-P---QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG  311 (330)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CHHHHHHHHHHHHhhC-c---cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence            356777776655   4568999999999888 6   57899999999999999999999999999999999998877665


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus       312 ~~  313 (330)
T 3hym_B          312 HC  313 (330)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.80  E-value=0.00013  Score=46.57  Aligned_cols=64  Identities=13%  Similarity=0.163  Sum_probs=54.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      ++.|..+....   +..+++..++..+..+ |   ...++++.+|..++++|+|++|..+++.+++..|++
T Consensus         8 ~~l~~~~~~~~---~~~~A~~~~~~a~~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            8 KELGNDAYKKK---DFDTALKHYDKAKELD-P---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHHhcC-C---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            45666665544   5668999999999988 5   568999999999999999999999999999999877

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.80  E-value=0.0002  Score=50.88  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch---------------HHHHHHHHHHHhhhhchHHHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK---------------RDYLYYLAIGNARIKEYTKSLKYCRAFL   68 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~---------------rd~LYyLAvg~yklgdY~~A~~~~~~lL   68 (128)
                      ++.|..+.+..   +..++++.+++.++.. |  ...               .++++.+|..++++|+|++|+.+++.++
T Consensus        42 ~~~g~~~~~~~---~~~~A~~~~~~al~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  115 (198)
T 2fbn_A           42 KEEGNEFFKKN---EINEAIVKYKEALDFF-I--HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL  115 (198)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTT-T--TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHHH-h--cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45566666554   5568999999988865 3  122               3899999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHH
Q psy16295         69 AIESENSQVQHLESIVK   85 (128)
Q Consensus        69 ~~eP~N~QA~~Lk~~Ie   85 (128)
                      +++|++.++.-..-.+-
T Consensus       116 ~~~p~~~~~~~~lg~~~  132 (198)
T 2fbn_A          116 KIDKNNVKALYKLGVAN  132 (198)
T ss_dssp             HHSTTCHHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHH
Confidence            99999988766555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.79  E-value=0.00022  Score=49.68  Aligned_cols=72  Identities=15%  Similarity=0.186  Sum_probs=55.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      .+..|.++.+..   +..++++.++..++.+ |   ...+.++.+|..+.+.|+|++|+.+++.+++.+|++..+....
T Consensus        11 ~~~~~~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A           11 KTQLAMEYMRGQ---DYRQATASIEDALKSD-P---KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHh---hHHHHHHHHHHHHHhC-c---cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            355666766655   4557888888888877 5   4678888899999999999999999999999999887665443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.78  E-value=0.00025  Score=51.82  Aligned_cols=78  Identities=5%  Similarity=0.091  Sum_probs=62.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh------------------hhchHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR------------------IKEYTKSLKYC   64 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk------------------lgdY~~A~~~~   64 (128)
                      .|+.|+++.+..   +..++|+.++.+++.. |+.....+.+|+++..+++                  +|++++|+..+
T Consensus        44 ~~~lg~~~~~~~---~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           44 QLDLIYAYYKNA---DLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC---CHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            567777887765   4568999999999887 6322345789999999997                  57999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHH
Q psy16295         65 RAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        65 ~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      +.+++..|++..+...+..+
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l  139 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRL  139 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHH
T ss_pred             HHHHHHCcCChhHHHHHHHH
Confidence            99999999999876554443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.77  E-value=0.00015  Score=51.24  Aligned_cols=70  Identities=19%  Similarity=0.139  Sum_probs=55.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccc-------------cchHHHHHHHHHHHhhhhchHHHHHHHHHHHh
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDI-------------DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA   69 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~-------------~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~   69 (128)
                      .+++|.++.+..   +..++++.++..++.. |+.             ....+.++.+|..++++|+|++|+.+++..++
T Consensus        74 ~~~lg~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           74 YFQRGMLYYQTE---KYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcc---cHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            467777777765   4557889999888865 310             12459999999999999999999999999999


Q ss_pred             cCCCCHH
Q psy16295         70 IESENSQ   76 (128)
Q Consensus        70 ~eP~N~Q   76 (128)
                      +.|++..
T Consensus       150 ~~p~~~~  156 (213)
T 1hh8_A          150 MKSEPRH  156 (213)
T ss_dssp             TCCSGGG
T ss_pred             cCccccc
Confidence            9998865

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.77  E-value=0.0001  Score=56.98  Aligned_cols=68  Identities=7%  Similarity=0.006  Sum_probs=57.5

Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          7 SFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         7 AwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      +|.-+.. ...+..+++.++++++... |   ...+.++.+|+.+.++|+|++|..+++.+|+.+|+|..+..
T Consensus       171 a~~~l~~-~~~~~~eA~~~~~~~l~~~-p---~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          171 AWVSLAA-GGEKLQDAYYIFQEMADKC-S---PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             HHHHHHH-CTTHHHHHHHHHHHHHHHS-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHh-CchHHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4544433 2467889999999999997 6   57889999999999999999999999999999999998753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.76  E-value=0.00025  Score=51.18  Aligned_cols=68  Identities=6%  Similarity=-0.057  Sum_probs=46.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      +++|.++.+..   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++.+++..|++....
T Consensus        81 ~~la~~~~~~~---~~~~A~~~~~~al~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  148 (275)
T 1xnf_A           81 NYLGIYLTQAG---NFDAAYEAFDSVLELD-P---TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS  148 (275)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHHhcC-c---cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHH
Confidence            45555555543   4456777777777766 4   4567777777777777777777777777777777776443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.75  E-value=0.00034  Score=50.26  Aligned_cols=72  Identities=14%  Similarity=0.111  Sum_probs=45.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhh--ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFK--TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~--~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      +++|+++....   +..++++.++..++  .. |   ...+.++.+|..++++|+|++|+.+++.+++..|++.++....
T Consensus       109 ~~la~~~~~~g---~~~~A~~~~~~~~~~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  181 (252)
T 2ho1_A          109 NNYGGFLYEQK---RYEEAYQRLLEASQDTLY-P---ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEM  181 (252)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHTTCTTC-T---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             HHHHHHHHHHh---HHHHHHHHHHHHHhCccC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            45566665543   34466677776666  33 3   4566666777777777777777777777777777766655443


Q ss_pred             H
Q psy16295         82 S   82 (128)
Q Consensus        82 ~   82 (128)
                      -
T Consensus       182 a  182 (252)
T 2ho1_A          182 A  182 (252)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.72  E-value=0.00028  Score=49.73  Aligned_cols=51  Identities=8%  Similarity=0.029  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      ++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++..++..|+|.
T Consensus        55 ~A~~~~~~al~~~-~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           55 EAEKAFTRSINRD-K---HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHHhC-c---cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            4555555555544 3   3345555555555555555555555555555555544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.72  E-value=0.00026  Score=51.14  Aligned_cols=74  Identities=7%  Similarity=0.032  Sum_probs=59.9

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.|.++....   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+++++.+++.+|++..+....-.
T Consensus        47 ~~l~~~~~~~~---~~~~A~~~~~~al~~~-~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  119 (275)
T 1xnf_A           47 YERGVLYDSLG---LRALARNDFSQALAIR-P---DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  119 (275)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHcc---cHHHHHHHHHHHHHcC-C---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHH
Confidence            45566666554   4568999999999888 6   578899999999999999999999999999999999876655444


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus       120 ~  120 (275)
T 1xnf_A          120 A  120 (275)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.72  E-value=0.00016  Score=58.52  Aligned_cols=73  Identities=12%  Similarity=-0.017  Sum_probs=62.4

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++++++.+..   +..++++.+++.++.+ |   ...+.++.++..+.+.|++++|+++++.+++++|+|..+..+...
T Consensus       520 ~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~  592 (597)
T 2xpi_A          520 ANLGHAYRKLK---MYDAAIDALNQGLLLS-T---NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR  592 (597)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHS-S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            56677777754   4568999999999888 6   568999999999999999999999999999999999988776543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.70  E-value=0.00014  Score=54.07  Aligned_cols=80  Identities=6%  Similarity=0.096  Sum_probs=63.5

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhc-------cCccccchHHHH----HHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKT-------ETEDIDRKRDYL----YYLAIGNARIKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~-------~~~~~~~~rd~L----YyLAvg~yklgdY~~A~~~~~~lL~~eP   72 (128)
                      .|.+.+|.+-..   ..++|+-.+..++-       + |   ...+.|    |-.++++.++|+|++|+.+++..|+++|
T Consensus        61 ~n~g~al~~Lgr---~~eAl~~~~kAL~l~n~~~e~~-p---d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p  133 (159)
T 2hr2_A           61 AGLAEALAGLRS---FDEALHSADKALHYFNRRGELN-Q---DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  133 (159)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHCCTT-S---THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCC---HHHHHHHHHHHHHhhhccccCC-C---chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            345556665543   44677777777776       8 6   578899    9999999999999999999999999999


Q ss_pred             CCH----HHHHHHHHHHHHHhh
Q psy16295         73 ENS----QVQHLESIVKKRMET   90 (128)
Q Consensus        73 ~N~----QA~~Lk~~Ie~~i~k   90 (128)
                      ++.    +-..+++.|+++.+|
T Consensus       134 ~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A          134 ERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HCCSCCTTHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH
Confidence            984    566778888877766

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.70  E-value=0.00023  Score=54.33  Aligned_cols=74  Identities=14%  Similarity=0.203  Sum_probs=62.8

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      -|+.|..+.+..   +..+++++++..++.+ |   ...+.++.++..++++|+|++|+.+++..++.+|++..+....-
T Consensus        68 ~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (365)
T 4eqf_A           68 AFEEGLKRLKEG---DLPVTILFMEAAILQD-P---GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA  140 (365)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            467778887765   5668999999999988 6   57899999999999999999999999999999999987655443


Q ss_pred             H
Q psy16295         83 I   83 (128)
Q Consensus        83 ~   83 (128)
                      .
T Consensus       141 ~  141 (365)
T 4eqf_A          141 V  141 (365)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.70  E-value=0.00022  Score=59.32  Aligned_cols=74  Identities=11%  Similarity=0.103  Sum_probs=43.1

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|.++.+..   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+++++..|+++|++.++......
T Consensus        44 ~~lg~~~~~~g---~~~~A~~~~~~al~l~-p---~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~  116 (477)
T 1wao_1           44 GNRSLAYLRTE---CYGYALGDATRAIELD-K---KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE  116 (477)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHSC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHH
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44555555443   3345666666666655 4   345666666666666666666666666666666666655544443


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus       117 ~  117 (477)
T 1wao_1          117 C  117 (477)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.70  E-value=0.00028  Score=51.90  Aligned_cols=74  Identities=7%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      |+.|+.+.+..   +..+++.++++.++.+ |   ...+.++.+|..+++.|+|++|+.+++.+++.+|++..+....-.
T Consensus        25 ~~~a~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   97 (327)
T 3cv0_A           25 MEEGLSMLKLA---NLAEAALAFEAVCQAA-P---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV   97 (327)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhc---cHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence            66777777765   4568999999999888 6   578899999999999999999999999999999999877654443


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus        98 ~   98 (327)
T 3cv0_A           98 S   98 (327)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.69  E-value=0.00031  Score=48.64  Aligned_cols=72  Identities=11%  Similarity=0.066  Sum_probs=44.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHH-Hhhhhch--HHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIG-NARIKEY--TKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg-~yklgdY--~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      +.+|.++....   +..+++..++..++.+ |   ...+.++.+|.. +++.|+|  ++|+.+++.+++.+|++..+...
T Consensus        48 ~~lg~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  120 (177)
T 2e2e_A           48 ALLGEYYLWQN---DYSNSLLAYRQALQLR-G---ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALML  120 (177)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHH-C---SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHcC-C---CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHH
Confidence            34455554443   3446666666666666 4   346666666666 6667776  77777777777777776665544


Q ss_pred             HH
Q psy16295         81 ES   82 (128)
Q Consensus        81 k~   82 (128)
                      .-
T Consensus       121 la  122 (177)
T 2e2e_A          121 LA  122 (177)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.69  E-value=0.00041  Score=54.45  Aligned_cols=80  Identities=11%  Similarity=0.059  Sum_probs=65.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|+++.+.....+..++++.++..+..+ |   ...+.++.+|..+.++|+|++|+.+++.+++++|++.++.....
T Consensus       415 ~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  490 (514)
T 2gw1_A          415 LVGKATLLTRNPTVENFIEATNLLEKASKLD-P---RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT  490 (514)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            4566666665111456778999999999888 6   57899999999999999999999999999999999999987766


Q ss_pred             HHHH
Q psy16295         83 IVKK   86 (128)
Q Consensus        83 ~Ie~   86 (128)
                      ..+.
T Consensus       491 ~~~~  494 (514)
T 2gw1_A          491 FAEA  494 (514)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.68  E-value=0.00029  Score=53.89  Aligned_cols=74  Identities=9%  Similarity=0.092  Sum_probs=52.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.|..+.+..   +..++++.++..++.+ |   ...+.++.+|..++++|+|++|+.+++..++++|+|..+....-.
T Consensus         8 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            8 KEQGNRLFVGR---KYPEAAACYGRAITRN-P---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45555555544   4556888888887777 5   467788888888888888888888888888888888776554443


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus        81 ~   81 (281)
T 2c2l_A           81 C   81 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.66  E-value=0.00049  Score=48.72  Aligned_cols=53  Identities=11%  Similarity=0.275  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      ++++.++..++.. |   ...+.++.+|..+.++|+|++|+.+++.+++..|++.++
T Consensus       109 ~A~~~~~~~~~~~-~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  161 (243)
T 2q7f_A          109 EAKDMFEKALRAG-M---ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA  161 (243)
T ss_dssp             HHHHHHHHHHHHT-C---CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHH
Confidence            4444444444444 2   234444555555555555555555555555555554443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.66  E-value=0.00031  Score=55.74  Aligned_cols=78  Identities=10%  Similarity=0.089  Sum_probs=62.4

Q ss_pred             HHHHHHHhccCCh-------hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295          4 FNYSFCLVRSEFC-------ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         4 F~YAwaLv~S~~~-------~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      ++.|+++.+..+.       .+..+++..++..+..+ |   ...+.++.+|..+.++|+|++|+.+++..+++.|++..
T Consensus       422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P---RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE  497 (537)
T ss_dssp             HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred             HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            3445666555333       78889999999999988 6   56799999999999999999999999999999999998


Q ss_pred             HHHHHHHHH
Q psy16295         77 VQHLESIVK   85 (128)
Q Consensus        77 A~~Lk~~Ie   85 (128)
                      ........+
T Consensus       498 ~~~~~~~~~  506 (537)
T 3fp2_A          498 KLQATTFAE  506 (537)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhHHH
Confidence            876555433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.66  E-value=0.0003  Score=50.57  Aligned_cols=77  Identities=13%  Similarity=0.090  Sum_probs=62.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+++|+++.+..   +..++++.++..++.. |   ...+.++.+|..++++|+|++|+.+++.+++..|++..+..+..
T Consensus       144 ~~~la~~~~~~g---~~~~A~~~~~~~~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  216 (252)
T 2ho1_A          144 FENLGLVSLQMK---KPAQAKEYFEKSLRLN-R---NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI  216 (252)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHhcC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            456777777654   4558899999988887 5   56888999999999999999999999999999999988877666


Q ss_pred             HHHH
Q psy16295         83 IVKK   86 (128)
Q Consensus        83 ~Ie~   86 (128)
                      .+..
T Consensus       217 ~~~~  220 (252)
T 2ho1_A          217 RLAK  220 (252)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.64  E-value=0.00037  Score=53.11  Aligned_cols=74  Identities=9%  Similarity=0.007  Sum_probs=51.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++++..+.+.   .+..++++.+++.++.+ |   ...+.++.++..+.++|+|++|+.+++..++++|++..+....-.
T Consensus       217 ~~l~~~~~~~---g~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  289 (365)
T 4eqf_A          217 TGLGVLFHLS---GEFNRAIDAFNAALTVR-P---EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI  289 (365)
T ss_dssp             HHHHHHHHHH---TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHC---CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence            4455555543   34557778888777776 5   456778888888888888888888888888888887666544433


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus       290 ~  290 (365)
T 4eqf_A          290 S  290 (365)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=97.64  E-value=0.00021  Score=56.79  Aligned_cols=77  Identities=8%  Similarity=0.089  Sum_probs=63.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.|..+.+..+.   .++++.+++.++.+ |   ...+.++.+|..++++|+|++|+++++.+++.+|+|..+....-.
T Consensus        29 ~~~g~~~~~~g~~---~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  101 (537)
T 3fp2_A           29 KNRGNHFFTAKNF---NEAIKYYQYAIELD-P---NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHTTCC---C-CHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccH---HHHHHHHHHHHhhC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            5566666666543   47999999999998 6   578999999999999999999999999999999999988766655


Q ss_pred             HHHH
Q psy16295         84 VKKR   87 (128)
Q Consensus        84 Ie~~   87 (128)
                      +-..
T Consensus       102 ~~~~  105 (537)
T 3fp2_A          102 ANES  105 (537)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.63  E-value=9.4e-05  Score=52.01  Aligned_cols=74  Identities=8%  Similarity=-0.011  Sum_probs=62.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|+.|..+.+..+   ..+++..++..++.+ |   ...+.++.+|..+.+.|+|++|+.+++.+++.+| ++....+..
T Consensus         9 ~~~~a~~~~~~g~---~~~A~~~~~~al~~~-P---~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            9 LLKQVSELLQQGE---HAQALNVIQTLSDEL-Q---SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHTSCHHH-H---TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHHC-C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            4677777777664   468999999999988 7   6789999999999999999999999999999999 887766654


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus        81 ~~   82 (176)
T 2r5s_A           81 KL   82 (176)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.63  E-value=0.0004  Score=52.39  Aligned_cols=75  Identities=15%  Similarity=0.250  Sum_probs=61.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      -|+.|..+.+..   +..+++..++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++.+|++..+....-
T Consensus        67 ~~~~~~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  139 (368)
T 1fch_A           67 PFEEGLRRLQEG---DLPNAVLLFEAAVQQD-P---KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA  139 (368)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHSC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            456677777655   4568999999999887 6   57889999999999999999999999999999999987765544


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus       140 ~~  141 (368)
T 1fch_A          140 VS  141 (368)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.62  E-value=0.00024  Score=58.00  Aligned_cols=62  Identities=6%  Similarity=0.147  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      ..+++..++..++.+ |   ...+.+++++..+.++|+|++|+.+++.+|+++|+|..+-.-+..+
T Consensus       148 ~~eAl~~~~~al~l~-P---~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~  209 (382)
T 2h6f_A          148 LHEEMNYITAIIEEQ-P---KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV  209 (382)
T ss_dssp             HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence            455666666666666 4   4566666666666666666666666666666666666555444433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=97.60  E-value=0.00055  Score=51.63  Aligned_cols=74  Identities=9%  Similarity=-0.009  Sum_probs=53.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|.++.+..   +..++++.++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++++|++..+....-.
T Consensus       221 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~  293 (368)
T 1fch_A          221 CGLGVLFNLSG---EYDKAVDCFTAALSVR-P---NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGI  293 (368)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45556665544   4557888888888776 5   457788888888888888888888888888888888766554444


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus       294 ~  294 (368)
T 1fch_A          294 S  294 (368)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.59  E-value=0.00037  Score=54.84  Aligned_cols=76  Identities=11%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch--------------HHHHHHHHHHHhhhhchHHHHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK--------------RDYLYYLAIGNARIKEYTKSLKYCRAFL   68 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~--------------rd~LYyLAvg~yklgdY~~A~~~~~~lL   68 (128)
                      .++++..+.+..   +..+++..++..++.. |  ...              .++++.+|..++++|+|++|+.+++.+|
T Consensus       150 ~~~~g~~~~~~g---~~~~A~~~y~~Al~~~-p--~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          150 VKERGTVYFKEG---KYKQALLQYKKIVSWL-E--YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHT-T--TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHHh-h--ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            356667776644   5668999999999887 5  232              6899999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHH
Q psy16295         69 AIESENSQVQHLESIV   84 (128)
Q Consensus        69 ~~eP~N~QA~~Lk~~I   84 (128)
                      +++|+|..+...+-.+
T Consensus       224 ~~~p~~~~a~~~lg~~  239 (336)
T 1p5q_A          224 ELDSNNEKGLSRRGEA  239 (336)
T ss_dssp             HHCTTCHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHH
Confidence            9999998876655444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=97.58  E-value=0.00018  Score=52.19  Aligned_cols=65  Identities=12%  Similarity=0.178  Sum_probs=38.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+++|..+....+   ..+++..+++.++.+ |   ...++++.+|..++++|+|++|+.+++.+++ .|+|+
T Consensus         6 ~~~~a~~~~~~~~---~~~A~~~~~~~l~~~-p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~   70 (272)
T 3u4t_A            6 EFRYADFLFKNNN---YAEAIEVFNKLEAKK-Y---NSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT   70 (272)
T ss_dssp             HHHHHHHHHTTTC---HHHHHHHHHHHHHTT-C---CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT
T ss_pred             HHHHHHHHHHhcC---HHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch
Confidence            3556666655443   335666666666665 4   3455666666666666666666666666666 44443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=97.57  E-value=0.00062  Score=50.05  Aligned_cols=71  Identities=11%  Similarity=-0.031  Sum_probs=47.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      +.+|+.+.+..   +..++++.++..++.+ |   ...+.++.+|..+.+.|+|++|+.+++.+++..|++..+....
T Consensus       176 ~~la~~~~~~~---~~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  246 (327)
T 3cv0_A          176 ASLGVLYNLSN---NYDSAAANLRRAVELR-P---DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNM  246 (327)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhc---cHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            44555555443   3456777777777666 4   4567777777777777777777777777777777776655443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.56  E-value=0.00051  Score=53.00  Aligned_cols=74  Identities=8%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHH-HHHHHHHHHhcCCCCHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTK-SLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~-A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      .++.|.++.+..+   ..++++.|++.+..+ |   ...+.++.+++.+..+|++++ +.++++.+++++|+|+.+..+.
T Consensus       203 ~~~la~~~~~~g~---~~eA~~~l~~al~~~-p---~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          203 LNGQAACHMAQGR---WEAAEGVLQEALDKD-S---GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            3567777777664   458999999999998 7   689999999999999999986 6799999999999999998876


Q ss_pred             HH
Q psy16295         82 SI   83 (128)
Q Consensus        82 ~~   83 (128)
                      +.
T Consensus       276 ~~  277 (291)
T 3mkr_A          276 AK  277 (291)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.56  E-value=0.00017  Score=46.84  Aligned_cols=50  Identities=10%  Similarity=0.086  Sum_probs=43.8

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      ...+.+|.+|..++++|+|++|+.+++.+++.+|++.++....-.+-.+.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   54 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERL   54 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            56889999999999999999999999999999999999877666664443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.54  E-value=0.0005  Score=55.46  Aligned_cols=77  Identities=9%  Similarity=0.147  Sum_probs=60.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhh----------------ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFK----------------TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAF   67 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~----------------~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~l   67 (128)
                      ++.|..+.+..   +..++++.++..++                .+ |   ...++++.+|..++++|+|++|+.+++.+
T Consensus       227 ~~~g~~~~~~g---~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~---~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          227 KNIGNTFFKSQ---NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-P---VALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-H---HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHHHHhhcCccccChHHHHHHH-H---HHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            45566666554   45577888887776                33 3   57899999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHH
Q psy16295         68 LAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        68 L~~eP~N~QA~~Lk~~Ie~~   87 (128)
                      |+++|+|.++.-.+-.+-.+
T Consensus       300 l~~~p~~~~a~~~lg~~~~~  319 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQG  319 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHH
Confidence            99999999887666555433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.52  E-value=0.00036  Score=60.32  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .++.|.++....   +..++++.++..++.+ |   ...+.+|.+|..++++|+|++|+.+++.+|+.+|+|.++..-.-
T Consensus       436 ~~~~a~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg  508 (681)
T 2pzi_A          436 PLMEVRALLDLG---DVAKATRKLDDLAERV-G---WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALA  508 (681)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             HHHHHHHHHhcC---CHHHHHHHHHHHhccC-c---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            355666666654   4568999999999998 6   57899999999999999999999999999999999988875544


Q ss_pred             HH
Q psy16295         83 IV   84 (128)
Q Consensus        83 ~I   84 (128)
                      .+
T Consensus       509 ~~  510 (681)
T 2pzi_A          509 AT  510 (681)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.51  E-value=0.00064  Score=52.36  Aligned_cols=69  Identities=13%  Similarity=0.072  Sum_probs=45.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      ++++.++.+..   +..++++.+++.++.. |   ...+.++.++..+.+.|+|++|+.+++.+++..|++..+..
T Consensus       275 ~~l~~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  343 (388)
T 1w3b_A          275 CNLANALKEKG---SVAEAEDCYNTALRLC-P---THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS  343 (388)
T ss_dssp             HHHHHHHHHHS---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHhhC-c---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45566665544   3446777777777666 4   45667777777777777777777777777777777765543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.51  E-value=0.0006  Score=56.41  Aligned_cols=57  Identities=5%  Similarity=-0.032  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      ..++++.+++.++.+ |   ...+.++.+|..++++|+|++|+.+++..++.+|+|.++..
T Consensus        39 ~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   95 (568)
T 2vsy_A           39 TTAGEMAVQRGLALH-P---GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL   95 (568)
T ss_dssp             HHHHHHHHHHHHTTS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            335555555555554 3   34455555555555555555555555555555555544433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.51  E-value=0.0005  Score=46.53  Aligned_cols=75  Identities=5%  Similarity=0.042  Sum_probs=55.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccc----cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDI----DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~----~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      -++.|.++.+..   +..++|+.++..++-+ |+.    ...-.+++.++..+.++|+|++|+++++..|+..|++.-..
T Consensus        45 ~~nlg~~~~~~~---~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~  120 (127)
T 4gcn_A           45 YNNKAAVYFEEK---KFAECVQFCEKAVEVG-RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK  120 (127)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred             HHhHHHHHHHhh---hHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence            356777777765   4557888888877665 310    12235788899999999999999999999999999755444


Q ss_pred             HHH
Q psy16295         79 HLE   81 (128)
Q Consensus        79 ~Lk   81 (128)
                      .|+
T Consensus       121 ~l~  123 (127)
T 4gcn_A          121 KVK  123 (127)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.51  E-value=0.00067  Score=52.73  Aligned_cols=70  Identities=6%  Similarity=0.018  Sum_probs=46.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      +..|..+.+..   +..+++.++++.++.+ |   ...+.++.+|..++++|+|++|+.+++.+++.+|++..+...
T Consensus        30 ~~~~~~~~~~g---~~~~A~~~~~~~l~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   99 (450)
T 2y4t_A           30 LELGKKLLAAG---QLADALSQFHAAVDGD-P---DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ   99 (450)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            45555555544   3446777777777666 4   456777777777777777777777777777777777655443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.48  E-value=0.00062  Score=55.97  Aligned_cols=75  Identities=15%  Similarity=0.183  Sum_probs=60.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch--------------HHHHHHHHHHHhhhhchHHHHHHHHHHHh
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK--------------RDYLYYLAIGNARIKEYTKSLKYCRAFLA   69 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~--------------rd~LYyLAvg~yklgdY~~A~~~~~~lL~   69 (128)
                      ++.++.+.+..   +..+++..++..++.. |  ...              ..+++.+|.+++++|+|++|+.+++.+|+
T Consensus       272 ~~~G~~~~~~g---~~~~A~~~y~~Al~~~-p--~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          272 KEKGTVYFKGG---KYMQAVIQYGKIVSWL-E--MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHH-T--TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCC---CHHHHHHHHHHHHHHh-c--ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            46667776644   5668999999988876 4  222              68999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHH
Q psy16295         70 IESENSQVQHLESIV   84 (128)
Q Consensus        70 ~eP~N~QA~~Lk~~I   84 (128)
                      ++|+|..+.-.+-.+
T Consensus       346 ~~p~~~~a~~~~g~a  360 (457)
T 1kt0_A          346 LDSANEKGLYRRGEA  360 (457)
T ss_dssp             HSTTCHHHHHHHHHH
T ss_pred             cCCccHHHHHHHHHH
Confidence            999998876555444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.47  E-value=0.00067  Score=47.52  Aligned_cols=56  Identities=13%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             HHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH--HHHHHH
Q psy16295         22 GILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS--QVQHLE   81 (128)
Q Consensus        22 GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~--QA~~Lk   81 (128)
                      ++..++..++.+ |   ...+.+|.+|..+.++|+|++|+.+++.+|+.+|++.  ++....
T Consensus        93 a~~~~~~al~~~-P---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l  150 (176)
T 2r5s_A           93 ELKRLEQELAAN-P---DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF  150 (176)
T ss_dssp             HHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred             HHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence            578888888887 6   5789999999999999999999999999999999863  454433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.46  E-value=0.00053  Score=50.45  Aligned_cols=61  Identities=7%  Similarity=-0.040  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ..+++.++++.++.+ |   ...+.++.++..+++.| +|++|+.+++.+++.+|++.++....-.
T Consensus        72 ~~~A~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  133 (330)
T 3hym_B           72 ANELFYLSHKLVDLY-P---SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH  133 (330)
T ss_dssp             HHHHHHHHHHHHHHC-T---TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-c---CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            445666666666555 4   34566666666666666 6666666666666666666655444333

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.42  E-value=0.00076  Score=55.79  Aligned_cols=78  Identities=6%  Similarity=-0.009  Sum_probs=62.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|.++....   +..++++.+++.++.+ |   ...+.++.+|..+.++|+|++|+.+++..++.+|+|.++......
T Consensus        61 ~~lg~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  133 (568)
T 2vsy_A           61 ARLGRVRWTQQ---RHAEAAVLLQQASDAA-P---EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN  133 (568)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56677776654   4568899999988887 6   568899999999999999999999999999999999887766655


Q ss_pred             HHHHH
Q psy16295         84 VKKRM   88 (128)
Q Consensus        84 Ie~~i   88 (128)
                      +....
T Consensus       134 ~~~~~  138 (568)
T 2vsy_A          134 WRRRL  138 (568)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            55544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=97.42  E-value=0.00095  Score=52.35  Aligned_cols=73  Identities=11%  Similarity=0.104  Sum_probs=55.9

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      ++.|..+.+..   +..+++..+++.++.+ |    ..+.++.+|..+.++|+|++|+.+++.+++.+|+|..+....-.
T Consensus        10 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-p----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A           10 KDKGNQFFRNK---KYDDAIKYYNWALELK-E----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHTS---CHHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhc---cHHHHHHHHHHHHhcC-c----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            45566666655   4557888888888887 6    26788888888888888888888888888888888877655544


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus        82 ~   82 (514)
T 2gw1_A           82 A   82 (514)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.41  E-value=0.00096  Score=54.37  Aligned_cols=77  Identities=12%  Similarity=0.202  Sum_probs=63.9

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc-hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE-YTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd-Y~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++..+.+.   .+..++++.++..++.+ |   ...+.+++++..+.++|+ |++|+.+++.+|+++|+|.++-..+..
T Consensus       102 ~lg~~~~~~---g~~~~Al~~~~~al~l~-P---~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~  174 (382)
T 2h6f_A          102 YFRAVLQRD---ERSERAFKLTRDAIELN-A---ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHT---CCCHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHC---CChHHHHHHHHHHHHhC-c---cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            444444443   34568999999999999 7   689999999999999996 999999999999999999999887776


Q ss_pred             HHHHH
Q psy16295         84 VKKRM   88 (128)
Q Consensus        84 Ie~~i   88 (128)
                      +-.++
T Consensus       175 ~~~~~  179 (382)
T 2h6f_A          175 LVEWL  179 (382)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            65444

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.40  E-value=0.00072  Score=53.34  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=57.1

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccch----------------HHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRK----------------RDYLYYLAIGNARIKEYTKSLKYCRAF   67 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~----------------rd~LYyLAvg~yklgdY~~A~~~~~~l   67 (128)
                      ++.++.+.+..   +..+++..++..++.. |+  ..                .++++.+|..++++|+|++|+.+++..
T Consensus       183 ~~~g~~~~~~g---~~~~A~~~y~~Al~~~-p~--~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          183 KMDGNSLFKEE---KLEEAMQQYEMAIAYM-GD--DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHTCSSS---CCHHHHHHHHHHHHHS-CH--HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHHHh-cc--chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45555555544   4457888888877776 41  11                159999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHH
Q psy16295         68 LAIESENSQVQHLESIV   84 (128)
Q Consensus        68 L~~eP~N~QA~~Lk~~I   84 (128)
                      |+++|+|..+.-.+-.+
T Consensus       257 l~~~p~~~~a~~~lg~a  273 (338)
T 2if4_A          257 LTEEEKNPKALFRRGKA  273 (338)
T ss_dssp             HHHCTTCHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHH
Confidence            99999998876554444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.39  E-value=0.00056  Score=52.29  Aligned_cols=66  Identities=8%  Similarity=0.227  Sum_probs=56.9

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+++|.++.+..   +..+++..++..++.+ |   ...+.+|.+|..+.++|+|++|+.+++..++.+|+|.
T Consensus        41 ~~~la~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  106 (281)
T 2c2l_A           41 YTNRALCYLKMQ---QPEQALADCRRALELD-G---QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (281)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHTTSC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhc---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            356677777655   4568999999999988 6   5789999999999999999999999999999999883

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.34  E-value=0.0015  Score=50.29  Aligned_cols=57  Identities=11%  Similarity=0.003  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      ..++++.++..++.+ |   ...+.++.++..+.+.|+|++|+.+++.+++..|++..+..
T Consensus       253 ~~~A~~~~~~al~~~-p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  309 (388)
T 1w3b_A          253 IDLAIDTYRRAIELQ-P---HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN  309 (388)
T ss_dssp             HHHHHHHHHHHHHTC-S---SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHH
Confidence            445666777666666 4   45666777777777777777777777777777777665543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.33  E-value=0.00086  Score=55.70  Aligned_cols=65  Identities=9%  Similarity=0.072  Sum_probs=57.5

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      ..+..++++.+++.++.+ |   ...+.++.+|..++++|+|++|+.+++..++++|++.++....-.+
T Consensus        19 ~g~~~~A~~~~~~Al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~   83 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELN-P---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   83 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            457789999999999998 6   5799999999999999999999999999999999998876655444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.31  E-value=0.0011  Score=58.69  Aligned_cols=68  Identities=12%  Similarity=0.070  Sum_probs=35.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ++++.++....   +..++++.++..++-+ |   ...+.++.||..+.++|+|++|+.+++..|+++|++..+.
T Consensus        81 ~nLg~~l~~~g---~~~~A~~~~~kAl~l~-P---~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~  148 (723)
T 4gyw_A           81 SNMGNTLKEMQ---DVQGALQCYTRAIQIN-P---AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY  148 (723)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            34444444433   2334555555555554 3   3455555555555555555555555555555555555543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.25  E-value=0.0014  Score=58.01  Aligned_cols=54  Identities=7%  Similarity=0.116  Sum_probs=27.2

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      ++++.+++.++-+ |   ...+.++.||..+.++|+|++|+.+++..|+++|++..+.
T Consensus        61 eA~~~~~~Al~l~-P---~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~  114 (723)
T 4gyw_A           61 EALMHYKEAIRIS-P---TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAH  114 (723)
T ss_dssp             HHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            4455555544444 3   3445555555555555555555555555555555554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.24  E-value=0.0019  Score=53.12  Aligned_cols=79  Identities=10%  Similarity=0.062  Sum_probs=64.9

Q ss_pred             HHHHHHHHhcc--CCh----hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh--------hchHHHHHHHHHHH
Q psy16295          3 QFNYSFCLVRS--EFC----ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI--------KEYTKSLKYCRAFL   68 (128)
Q Consensus         3 ~F~YAwaLv~S--~~~----~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl--------gdY~~A~~~~~~lL   68 (128)
                      .+++|+++...  ...    .+..++++.+++.++.+ |   ...+.++.+|..+.++        |+|++|+.+++..+
T Consensus       173 ~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al  248 (474)
T 4abn_A          173 LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-V---LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE  248 (474)
T ss_dssp             HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence            45667777654  222    67789999999999998 6   5789999999999999        99999999999999


Q ss_pred             hcCC---CCHHHHHHHHHHH
Q psy16295         69 AIES---ENSQVQHLESIVK   85 (128)
Q Consensus        69 ~~eP---~N~QA~~Lk~~Ie   85 (128)
                      +++|   ++..+....-.+-
T Consensus       249 ~~~p~~~~~~~~~~~lg~~~  268 (474)
T 4abn_A          249 KVDRKASSNPDLHLNRATLH  268 (474)
T ss_dssp             HHCGGGGGCHHHHHHHHHHH
T ss_pred             HhCCCcccCHHHHHHHHHHH
Confidence            9999   8888766555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.15  E-value=0.0018  Score=49.50  Aligned_cols=62  Identities=11%  Similarity=0.053  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHH
Q psy16295         22 GILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN--SQVQHLESIVKKR   87 (128)
Q Consensus        22 GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N--~QA~~Lk~~Ie~~   87 (128)
                      +++.|+..+..+ |   ...+.+|.||..+...|+|++|+..++.+|+.+|++  .++....-.+-+.
T Consensus       204 a~~~l~~al~~~-P---~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~  267 (287)
T 3qou_A          204 EIQQLQQQVAEN-P---EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA  267 (287)
T ss_dssp             HHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcC-C---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence            567777777777 6   578999999999999999999999999999999999  5555444444433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.14  E-value=0.0013  Score=48.84  Aligned_cols=71  Identities=7%  Similarity=0.033  Sum_probs=54.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCcccc-----c----hHHHHHHHHHHHhhhhchHHHHHHHHHHHhc----
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDID-----R----KRDYLYYLAIGNARIKEYTKSLKYCRAFLAI----   70 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~-----~----~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~----   70 (128)
                      ++.+..+.+..   +..++|+..+..++-+ |+..     .    .-.+++-+|.++.++|+|++|+.+++..|++    
T Consensus        15 ~~~G~~l~~~g---~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           15 LSDAQRQLVAG---EYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            44555555543   5567888888888877 5100     1    2349999999999999999999999999999    


Q ss_pred             ---CCCCHHHH
Q psy16295         71 ---ESENSQVQ   78 (128)
Q Consensus        71 ---eP~N~QA~   78 (128)
                         +|++.++-
T Consensus        91 ~e~~pd~~~A~  101 (159)
T 2hr2_A           91 GELNQDEGKLW  101 (159)
T ss_dssp             CCTTSTHHHHH
T ss_pred             ccCCCchHHHH
Confidence               99987765

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.11  E-value=0.0017  Score=39.50  Aligned_cols=46  Identities=13%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      ...+.++.+|..+++.|+|++|+.+++..++.+|++.++....-.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~   52 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   52 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            5678999999999999999999999999999999998765544333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.07  E-value=0.0017  Score=40.78  Aligned_cols=45  Identities=4%  Similarity=-0.003  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      .-+.++.+|..+++.|+|++|+.+++..++.+|++..+....-.+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   47 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMA   47 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            467899999999999999999999999999999998776544443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.07  E-value=0.0018  Score=49.47  Aligned_cols=66  Identities=8%  Similarity=0.098  Sum_probs=55.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .++.|..+....   +..+++..++..+..+ |   ...+.++.||..+.++|++++|+..++.+++.+|++.
T Consensus       120 ~~~~a~~~~~~g---~~~~A~~~~~~al~~~-P---~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~  185 (287)
T 3qou_A          120 XAQQAMQLMQES---NYTDALPLLXDAWQLS-N---QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR  185 (287)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHT-T---SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred             HHHHHHHHHhCC---CHHHHHHHHHHHHHhC-C---cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence            355666666654   4457999999999998 7   5789999999999999999999999999999999544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.06  E-value=0.0047  Score=49.88  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=60.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhcc-----CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTE-----TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~-----~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      +++++.+.+..   +..++++++++.++..     .|  ....+.++.++.++.+.|+|++|+++++.+++.+|+|..+.
T Consensus       479 ~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~p--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          479 NELGVVAFNKS---DMQTAINHFQNALLLVKKTQSNE--KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHSCCCS--GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHhC---CHHHHHHHHHHHHHhhhccccch--hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            45677777655   4557888888887762     13  23378999999999999999999999999999999998776


Q ss_pred             HHHHHHH
Q psy16295         79 HLESIVK   85 (128)
Q Consensus        79 ~Lk~~Ie   85 (128)
                      ...-.+-
T Consensus       554 ~~l~~~~  560 (597)
T 2xpi_A          554 TAIALVY  560 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.96  E-value=0.0023  Score=48.68  Aligned_cols=71  Identities=6%  Similarity=0.006  Sum_probs=49.1

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCcccc----chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDID----RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~----~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      .+++..+.+..   +..++++.++..++.. |+..    ...++++-+++.+.++|+|++|+.+++..++++|++....
T Consensus       162 ~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  236 (292)
T 1qqe_A          162 IKCADLKALDG---QYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred             HHHHHHHHHhC---CHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence            45666776665   4568999999998876 4211    1235788899999999999999999999999999987644

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.91  E-value=0.0067  Score=47.59  Aligned_cols=73  Identities=19%  Similarity=0.097  Sum_probs=56.1

Q ss_pred             HHHHHHhcc-CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          5 NYSFCLVRS-EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         5 ~YAwaLv~S-~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ++++.+..- ....+..+++..+++.+..+ |   ...+.++.+|..+.+.|+|++|..+++..++..|++..+..-.
T Consensus       214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  287 (472)
T 4g1t_A          214 LLALKLHKMREEGEEEGEGEKLVEEALEKA-P---GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI  287 (472)
T ss_dssp             HHHHHHHHCC------CHHHHHHHHHHHHC-S---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-c---cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence            444444433 23455668999999998888 6   6789999999999999999999999999999999998875443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.86  E-value=0.0028  Score=46.09  Aligned_cols=35  Identities=11%  Similarity=0.001  Sum_probs=32.1

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~   73 (128)
                      ...+.++.+|..+.++|+|++|+++++..+++.|+
T Consensus       276 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          276 TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            56788999999999999999999999999999886

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=96.84  E-value=0.0035  Score=49.21  Aligned_cols=74  Identities=11%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh---chHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK---EYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg---dY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      .+.+|++++-. ..+..++++.++..++.+ |   ...+.++.++..+++++   ++++|+..++..++++|++..+...
T Consensus       140 ~~~g~~~~~~~-~~~y~~A~~~~~kal~~~-p---~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~  214 (472)
T 4g1t_A          140 CEEGWTRLKCG-GNQNERAKVCFEKALEKK-P---KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL  214 (472)
T ss_dssp             HHHHHHHHHHC-TTHHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHc-cccHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence            46688887754 456789999999999998 7   57899999999988765   5578999999999999999988755


Q ss_pred             HH
Q psy16295         81 ES   82 (128)
Q Consensus        81 k~   82 (128)
                      ..
T Consensus       215 l~  216 (472)
T 4g1t_A          215 LA  216 (472)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=96.73  E-value=0.0038  Score=53.89  Aligned_cols=67  Identities=3%  Similarity=-0.101  Sum_probs=57.1

Q ss_pred             ChhhHHHHHHHHHHHh--------hccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         15 FCADIRKGILLLEELF--------KTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        15 ~~~d~~~GI~LL~~l~--------~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      ...+..++++.+++.+        ..+ |   ...+.++.+|..++++|+|++|+..++.+++.+|+|..+...+-.+-
T Consensus       403 ~~~~~~~A~~~~~~al~~~~~~~~~~~-p---~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          403 VLSQPVQTLDSLRAARHGALDADGVDF-S---ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAE  477 (681)
T ss_dssp             TTCCHHHHHHHHHHHHTC-------CC-T---TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHhhhhccccccccc-c---cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence            3456678999999998        666 5   67899999999999999999999999999999999998877665553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.71  E-value=0.0085  Score=42.64  Aligned_cols=62  Identities=15%  Similarity=0.014  Sum_probs=48.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhc-------cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKT-------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~-------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      .+++|+++....+   ..++++.+++.+..       +.|   ...+.++.+|..++++|+|++|+.+++..+++
T Consensus        88 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B           88 LNNLAVLYGKRGK---YKEAEPLCKRALEIREKVLGKFHP---DVAKQLNNLALLCQNQGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHTTTC---HHHHHHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3567777776654   44666666665554       223   67889999999999999999999999999998

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.70  E-value=0.01  Score=43.15  Aligned_cols=72  Identities=19%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             HHHHHHHHhccCC-hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          3 QFNYSFCLVRSEF-CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         3 ~F~YAwaLv~S~~-~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      .++++..+..... +.|..++++.++...+.+ |+ ....+.+|.|+..+..    .+|+++|+.+++...+. |.+..+
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~-~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a  164 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDS-ES-DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYA  164 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TS-HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CC-cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHH
Confidence            3444444443221 345555555555555544 20 1235555555555555    55556666655555555 444443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=96.64  E-value=0.013  Score=46.90  Aligned_cols=72  Identities=13%  Similarity=0.110  Sum_probs=52.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccC-ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTET-EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~-~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      .|+.+.++..-..   ..+++..+++...... |  ....|-+|+++++..++|+.++|+..++.++..+|+ .++...
T Consensus       174 ~~~LG~al~~LG~---~~eAl~~l~~a~~g~~~P--~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a  246 (282)
T 4f3v_A          174 GVAHGVAAANLAL---FTEAERRLTEANDSPAGE--ACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA  246 (282)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHTSTTTT--TTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred             HHHHHHHHHHCCC---HHHHHHHHHHHhcCCCCc--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence            4556666666553   4477888887765443 3  236788888888888888888888888888888888 665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.63  E-value=0.0039  Score=45.80  Aligned_cols=64  Identities=8%  Similarity=0.005  Sum_probs=43.1

Q ss_pred             HHHHHHHHhccC-ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCC
Q psy16295          3 QFNYSFCLVRSE-FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus         3 ~F~YAwaLv~S~-~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP   72 (128)
                      .++++..+.+.. ...+..++++.++..++.+      ..+.++.++..+.+    .++|++|+.+++..++..|
T Consensus       149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence            456666665521 1345567777777776654      24677777777777    7888888888777777766

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.50  E-value=0.016  Score=44.96  Aligned_cols=64  Identities=14%  Similarity=0.098  Sum_probs=51.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhh-----ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFK-----TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~-----~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~   73 (128)
                      .+++|++..+..   +..++++.+++.+.     .+ |   ...++++.+|..++++|+|++|+.+++..+++-|.
T Consensus       225 ~~~lg~~y~~~~---~~~~A~~~~~~al~~~~~~~~-~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          225 LLNIANSYDRSG---DDQMAVEHFQKAAKVSREKVP-D---LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHHCG-G---GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhCC-h---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            456777777654   44578888888777     55 5   34899999999999999999999999999998543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.43  E-value=0.019  Score=37.08  Aligned_cols=69  Identities=16%  Similarity=0.074  Sum_probs=41.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP   72 (128)
                      .++.|+.+....+.+.-.+-.+-..++.+.. ++......+++.+|..+..+|+|++|..+++..+++.|
T Consensus        52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           52 YSNLGNAYIFLGEFETASEYYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4566666666666655443333333333331 11146677777777777777777777777777776643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=96.42  E-value=0.022  Score=43.40  Aligned_cols=77  Identities=14%  Similarity=0.063  Sum_probs=51.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccc---cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH---HH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDI---DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS---QV   77 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~---~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~---QA   77 (128)
                      +++|+.+.+..   +..++++.+++.++.. |..   ....++++-++..+..+|+|++|+.+++..| ++|++.   ++
T Consensus       159 ~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~  233 (307)
T 2ifu_A          159 GKASRLLVRQQ---KFDEAAASLQKEKSMY-KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC  233 (307)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence            46677776654   4457888888877653 210   1123466666777778899999999999999 999654   44


Q ss_pred             HHHHHHHH
Q psy16295         78 QHLESIVK   85 (128)
Q Consensus        78 ~~Lk~~Ie   85 (128)
                      ..+..+++
T Consensus       234 ~~l~~l~~  241 (307)
T 2ifu_A          234 AALEDLLQ  241 (307)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.38  E-value=0.021  Score=40.50  Aligned_cols=52  Identities=17%  Similarity=0.133  Sum_probs=43.3

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE   71 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e   71 (128)
                      ...+++++++++....+.|   ...+.++.+|..++.+|+|++|+.+++..++..
T Consensus        22 ~~~~~al~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   73 (283)
T 3edt_B           22 PLCKQALEDLEKTSGHDHP---DVATMLNILALVYRDQNKYKEAAHLLNDALAIR   73 (283)
T ss_dssp             HHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            3456777777777766533   688999999999999999999999999999884

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.32  E-value=0.014  Score=37.73  Aligned_cols=70  Identities=11%  Similarity=-0.070  Sum_probs=51.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhc-cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKT-ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~-~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      -++.|+.+....+.++-.+-..-..++.+. +.+  .....+++.+|..++.+|+|++|+.+++..++..|+.
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~   82 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL   82 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            467888888887776644433333333332 212  5789999999999999999999999999999876653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=96.27  E-value=0.017  Score=43.81  Aligned_cols=54  Identities=17%  Similarity=0.124  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHhhc-cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295         19 IRKGILLLEELFKT-ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus        19 ~~~GI~LL~~l~~~-~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      ..+++..++..++. + |   ...+.++.++..+.++|++++|+..++.+|++.|++..
T Consensus        80 ~~~A~~~~~rAl~~~~-p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~  134 (308)
T 2ond_A           80 SDEAANIYERAISTLL-K---KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT  134 (308)
T ss_dssp             HHHHHHHHHHHHTTTT-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH
T ss_pred             hHHHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc
Confidence            47899999999984 6 6   56788999999999999999999999999999999875

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=96.22  E-value=0.019  Score=41.66  Aligned_cols=66  Identities=11%  Similarity=-0.027  Sum_probs=50.3

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCC
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~   73 (128)
                      +.|+++..+.+...+.|..++++.++.....+      ..+.+|.|+..+..    .+|+++|+.+++...+..|.
T Consensus        52 a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  121 (212)
T 3rjv_A           52 ALALLAQLKIRNPQQADYPQARQLAEKAVEAG------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSES  121 (212)
T ss_dssp             HHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTS
T ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCC
Confidence            45677777776444557888888888876554      36788888888887    88888888888888888884

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.19  E-value=0.048  Score=39.45  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=50.2

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhc-------cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKT-------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE   71 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~-------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e   71 (128)
                      .++.|+++....   +..+++.++++.++.       +.|   ...++++.+|..++.+|+|++|+.+++..++.-
T Consensus        30 ~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           30 LHNLVIQYASQG---RYEVAVPLCKQALEDLEKTSGHDHP---DVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            456777777665   455788888887773       223   678999999999999999999999999999883

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.10  E-value=0.017  Score=35.95  Aligned_cols=41  Identities=12%  Similarity=0.002  Sum_probs=34.6

Q ss_pred             HHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH-HHHHHHHHH
Q psy16295         45 YYLAIGNARIKEYTKSLKYCRAFLAIESENSQ-VQHLESIVK   85 (128)
Q Consensus        45 YyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q-A~~Lk~~Ie   85 (128)
                      |-.|..+++.|+|++|+.+++.+++.+|++.. +....-.+-
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~   45 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAY   45 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            56788999999999999999999999999987 655554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.09  E-value=0.014  Score=43.23  Aligned_cols=59  Identities=10%  Similarity=0.051  Sum_probs=51.0

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhch----------HHHHHHHHHHHhcCCCCHHHHHH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEY----------TKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY----------~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      ...+++..++..+..+ |   ...|.++.++.++.++++|          ++|+.+++..|+++|++.++.--
T Consensus        17 ~feeA~~~~~~Ai~l~-P---~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~   85 (158)
T 1zu2_A           17 LFEQIRQDAENTYKSN-P---LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            3457888999999988 7   6889999999999999875          59999999999999999987643

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.03  E-value=0.063  Score=36.74  Aligned_cols=67  Identities=6%  Similarity=0.055  Sum_probs=49.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhc---c-CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc---CCCC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKT---E-TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI---ESEN   74 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~---~-~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~---eP~N   74 (128)
                      .++.|+......+   ..++++.+++.+..   . .+  .....+++.+|..+..+|+|++|+.+++..+++   .|++
T Consensus        29 ~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  102 (203)
T 3gw4_A           29 RFMLGYVYAFMDR---FDEARASFQALQQQAQKSGDH--TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED  102 (203)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc
Confidence            3456666666554   44677777776651   1 11  367789999999999999999999999999998   5544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=95.88  E-value=0.037  Score=44.20  Aligned_cols=77  Identities=10%  Similarity=0.136  Sum_probs=66.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh--chHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK--EYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg--dY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      .++|..++.++....  .+++++.+.++.-+ |   ..-..+++-......++  +|++++++++.+|+..|+|.|+=.-
T Consensus        35 ~~~~~~a~~~~~e~s--~~aL~~t~~~L~~n-P---~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~  108 (306)
T 3dra_A           35 IMGLLLALMKAEEYS--ERALHITELGINEL-A---SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY  108 (306)
T ss_dssp             HHHHHHHHHHTTCCS--HHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred             HHHHHHHHHHcCCCC--HHHHHHHHHHHHHC-c---HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHH
Confidence            356777777776554  37999999999999 7   67889999999999999  9999999999999999999999888


Q ss_pred             HHHHH
Q psy16295         81 ESIVK   85 (128)
Q Consensus        81 k~~Ie   85 (128)
                      +..|-
T Consensus       109 R~~iL  113 (306)
T 3dra_A          109 RQLII  113 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77776

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.87  E-value=0.031  Score=42.30  Aligned_cols=70  Identities=13%  Similarity=-0.072  Sum_probs=51.1

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccc---cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDI---DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~---~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      +.|..+...  ..+..++++.+++.++-. |..   ....+++.-++..+.++|+|++|+.+++..+++.|++...
T Consensus       122 ~lg~~~~~~--lg~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          122 ELGEILEND--LHDYAKAIDCYELAGEWY-AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHT--TCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHh--hcCHHHHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            444444432  134567888888877654 210   1225789999999999999999999999999999998653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=95.74  E-value=0.044  Score=41.56  Aligned_cols=67  Identities=10%  Similarity=-0.012  Sum_probs=48.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHH-HHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRD-YLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd-~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      ++|+..+.+..   +..+++++++..++.. |   ...+ .++.++....+.|++++|+..++..++.+|.+.++
T Consensus       103 ~~~~~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~  170 (308)
T 2ond_A          103 FAYADYEESRM---KYEKVHSIYNRLLAIE-D---IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV  170 (308)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHTSS-S---SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHH
T ss_pred             HHHHHHHHhcC---CHHHHHHHHHHHHhcc-c---cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHH
Confidence            45555555443   4567888888888876 5   2333 67777788888888888888888888888877554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.71  E-value=0.034  Score=42.53  Aligned_cols=63  Identities=14%  Similarity=0.221  Sum_probs=45.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED-IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~-~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      +..|..+.+..   +..+++..+++.++.+ |+ .....++++.+|..++.+|+|++|+.+++..+++
T Consensus        52 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (411)
T 4a1s_A           52 ALEGERLCNAG---DCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL  115 (411)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC---cHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            34455555544   4567888888888876 41 0112368889999999999999999999988887

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.66  E-value=0.053  Score=41.87  Aligned_cols=64  Identities=9%  Similarity=0.155  Sum_probs=49.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhh-----ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFK-----TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~-----~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP   72 (128)
                      .++.|++..+..   +..++++.+++.++     .+.|   ....+++.+|..++++|+|++|..+++..+++.|
T Consensus       227 ~~~lg~~y~~~g---~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          227 LYNIGLCKNSQS---QYEDAIPYFKRAIAVFEESNILP---SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCGG---GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhhccch---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            456777776655   44578888887776     3323   5688999999999999999999999999998854

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=95.64  E-value=0.091  Score=43.11  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=62.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ++|--+++++....  .+++++.+.++..+ |   ..-..++|-......++ +|++++.+++.+|+.+|.|.|+=.-+.
T Consensus        57 ~~~~r~~~~~~e~s--e~AL~lt~~~L~~n-P---~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~  130 (349)
T 3q7a_A           57 MDYFRAIAAKEEKS--ERALELTEIIVRMN-P---AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL  130 (349)
T ss_dssp             HHHHHHHHHTTCCS--HHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC--HHHHHHHHHHHHhC-c---hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            44555555665443  36899999999998 6   57888899888888888 599999999999999999999987777


Q ss_pred             HHHHHH
Q psy16295         83 IVKKRM   88 (128)
Q Consensus        83 ~Ie~~i   88 (128)
                      .+-.++
T Consensus       131 wlL~~l  136 (349)
T 3q7a_A          131 LLLDRI  136 (349)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776666

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.58  E-value=0.042  Score=41.39  Aligned_cols=63  Identities=19%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED-IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~-~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      +..|..+.+..   +..+++..+++.++.. |+ .....++++.+|..++..|+|++|+.+++..+++
T Consensus        13 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   76 (406)
T 3sf4_A           13 ALEGERLCKSG---DCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   76 (406)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            55666776665   4558899999988876 41 0123578999999999999999999999998877

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.50  E-value=0.052  Score=39.12  Aligned_cols=63  Identities=19%  Similarity=0.244  Sum_probs=43.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc-ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED-IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~-~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      |..|..+.+..   +..+++..+++.++.+ |+ .....++++.+|..++..|+|++|+.+++..++.
T Consensus         9 ~~~g~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            9 ALEGERLCKSG---DCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---cHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34455555544   4457888888887775 41 0122578888888888888888888888887776

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.44  E-value=0.04  Score=42.15  Aligned_cols=68  Identities=12%  Similarity=0.011  Sum_probs=48.8

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETED---IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~---~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      .+++|..+.+..+   ..++++.+++.++.. +.   ......+++.+|..+.++|+|++|+.+++..+++.|++
T Consensus       226 ~~~la~~~~~~g~---~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  296 (411)
T 4a1s_A          226 CGNLGNTYYLLGD---FQAAIEHHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL  296 (411)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCC---hHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence            3456666666554   446777777766654 20   01233489999999999999999999999999988865

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.42  E-value=0.13  Score=37.54  Aligned_cols=60  Identities=8%  Similarity=0.073  Sum_probs=39.1

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIE   71 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~e   71 (128)
                      .|+++..+....   +..++++.++..++.+      ..+.++.++..+.+    .++|++|+.+++..++..
T Consensus         9 ~~~lg~~~~~~~---~~~~A~~~~~~a~~~~------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~   72 (273)
T 1ouv_A            9 LVGLGAKSYKEK---DFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN   72 (273)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC---CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence            455666666554   4556777777766633      24667777777777    777777777777776664

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=95.37  E-value=0.025  Score=43.14  Aligned_cols=67  Identities=9%  Similarity=0.021  Sum_probs=49.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETED---IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~---~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+.|..+.+    .+..++++.+++.+.-. |.   .....++++-+|..+.++|+|++|+.+++..+++.|++.
T Consensus       120 ~~lg~~~~~----g~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          120 DRAGKLMEP----LDLSKAVHLYQQAAAVF-ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHTT----TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHc----CCHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            344555433    56677888888766543 20   013368899999999999999999999999999988765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=95.32  E-value=0.017  Score=43.52  Aligned_cols=54  Identities=24%  Similarity=0.247  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHhh------ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         18 DIRKGILLLEELFK------TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        18 d~~~GI~LL~~l~~------~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      +..++++.++..++      .+ +  ...-..+|.+|..++++|+|++|+.+++..|++.|++
T Consensus       170 ~~~~A~~~~~~al~~~~~~~~~-~--~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~  229 (293)
T 3u3w_A          170 YLKKGIDLFEQILKQLEALHDN-E--EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI  229 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCC-H--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhcccc-h--hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence            55678888888774      22 2  3566789999999999999999999999999987665

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.31  E-value=0.086  Score=37.96  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=19.2

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP   72 (128)
                      .....++.+|..+.++|+|++|+.+++..+++.|
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            4555555555555555555555555555555544

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=95.28  E-value=0.029  Score=45.26  Aligned_cols=31  Identities=6%  Similarity=-0.035  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHhh----hhchHHHHHHHHHHHhcC
Q psy16295         41 RDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIE   71 (128)
Q Consensus        41 rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~e   71 (128)
                      .+.+|.|+..+++    .+|+++|+.+++..++..
T Consensus       399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            3445555555554    455555555555555555

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.11  E-value=0.056  Score=35.56  Aligned_cols=47  Identities=13%  Similarity=-0.072  Sum_probs=41.6

Q ss_pred             chHHHHHHHHHHHhhhhc---hHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         39 RKRDYLYYLAIGNARIKE---YTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgd---Y~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      .+.+.++-+|.+.|..++   .++|+..++..|+.+|+|..+..+.-.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~   53 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDH   53 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHH
Confidence            568999999999987777   89999999999999999999999885543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.02  E-value=0.16  Score=34.62  Aligned_cols=62  Identities=11%  Similarity=0.001  Sum_probs=39.3

Q ss_pred             HHHHHHHHhcc-CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhc
Q psy16295          3 QFNYSFCLVRS-EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAI   70 (128)
Q Consensus         3 ~F~YAwaLv~S-~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~   70 (128)
                      +|+++..+.+. ..+.|..++++.++.-.+.+      ..+..|.|+..|.+    .+|+++|+++++...+.
T Consensus        60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGLN------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            45666665542 22456667777777666554      25666777777777    67777777777776665

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=94.94  E-value=0.092  Score=42.68  Aligned_cols=76  Identities=3%  Similarity=-0.151  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh----hchHHHHHHHHHHHhcCCCCHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI----KEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl----gdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      +.++++..+.....+++..++++.++.....+ |   ..-..+|.|+..+.+.    +|+++|+++++...   |+|..+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~---~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a  250 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-T---VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS  250 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-C---SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence            35777778877777778888999988888887 3   3455568888888776    78888888888877   777777


Q ss_pred             HHHHHHH
Q psy16295         78 QHLESIV   84 (128)
Q Consensus        78 ~~Lk~~I   84 (128)
                      ..-.-.+
T Consensus       251 ~~~Lg~~  257 (452)
T 3e4b_A          251 WVSLAQL  257 (452)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.89  E-value=0.055  Score=41.82  Aligned_cols=74  Identities=7%  Similarity=0.036  Sum_probs=57.7

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccc--------------cchHHHHHHHHHHHhhhhchHHHHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDI--------------DRKRDYLYYLAIGNARIKEYTKSLKYCRAF   67 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~--------------~~~rd~LYyLAvg~yklgdY~~A~~~~~~l   67 (128)
                      ++++-|..|+.+.   +..++++.+.++++.. |+.              .....+++.|+..|+++|+|++|..++..+
T Consensus         6 ~~l~~a~~l~~~~---~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~   81 (434)
T 4b4t_Q            6 SKLEEARRLVNEK---QYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHS   81 (434)
T ss_dssp             HHHHHHHHHHHHT---CHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4567778888776   4557999999998875 320              123457999999999999999999999999


Q ss_pred             HhcCCCCHHHHH
Q psy16295         68 LAIESENSQVQH   79 (128)
Q Consensus        68 L~~eP~N~QA~~   79 (128)
                      ++..|...++..
T Consensus        82 ~~~~~~~~~~~~   93 (434)
T 4b4t_Q           82 TEYMMQFAKSKT   93 (434)
T ss_dssp             HHHHHTSCHHHH
T ss_pred             HHHHHHccchHH
Confidence            998887766543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=94.82  E-value=0.061  Score=42.88  Aligned_cols=65  Identities=11%  Similarity=0.126  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchH--HHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYT--KSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~--~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      .+..+.+++++..+..+ |   ..-.+++|-....-++++|+  +++.+++.+++.+|.|-.|=.=+..+-
T Consensus       124 ~~~~~EL~~~~~~l~~~-p---kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll  190 (306)
T 3dra_A          124 FDPYREFDILEAMLSSD-P---KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLL  190 (306)
T ss_dssp             CCTHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45678999999999998 6   78999999999999999999  999999999999999998866554443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=94.81  E-value=0.21  Score=38.61  Aligned_cols=76  Identities=12%  Similarity=-0.047  Sum_probs=52.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHh-----cCCCCHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA-----IESENSQ   76 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~-----~eP~N~Q   76 (128)
                      +++|.+.....+   ..++++.+++.++...  ++....-.+++.||..+.++|+|++|+.+++..++     .+|.+..
T Consensus       186 ~~lg~~y~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          186 FVIAGNYDDFKH---YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            456666665544   4467777766555310  11134567899999999999999999999999999     7887755


Q ss_pred             HHHHHH
Q psy16295         77 VQHLES   82 (128)
Q Consensus        77 A~~Lk~   82 (128)
                      +.....
T Consensus       263 ~~~~la  268 (378)
T 3q15_A          263 VLFGLS  268 (378)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444333

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=94.73  E-value=0.15  Score=34.77  Aligned_cols=65  Identities=8%  Similarity=-0.139  Sum_probs=37.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhcc--CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTE--TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE   71 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~--~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e   71 (128)
                      ++.++.+....+   ..+++..+++.+...  .++......+++.+|..+.++|+|++|+++++..+++-
T Consensus       111 ~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          111 YEVATVALHFGD---LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC---HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence            455555555443   335666666554321  01002334556777888888888888888877776653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=94.73  E-value=0.25  Score=39.73  Aligned_cols=70  Identities=13%  Similarity=0.040  Sum_probs=54.5

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      +.+++++.+.+...+.+..++++.++...+.+      ..+.+|.|+..++.    .+|+++|..+++..++..  ++++
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a  401 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAA  401 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHH
Confidence            35677777777666778889999988887765      36789999999998    899999999999988753  4554


Q ss_pred             HH
Q psy16295         78 QH   79 (128)
Q Consensus        78 ~~   79 (128)
                      ..
T Consensus       402 ~~  403 (490)
T 2xm6_A          402 QV  403 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=94.64  E-value=0.095  Score=39.26  Aligned_cols=59  Identities=19%  Similarity=0.117  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHH---hcCCCCHH
Q psy16295         18 DIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFL---AIESENSQ   76 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL---~~eP~N~Q   76 (128)
                      +..++++.+++.+....  ++....-++++.+|..++++|+|++|+.+++..|   +..|+++.
T Consensus       130 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~  193 (293)
T 2qfc_A          130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcccc
Confidence            56689999888775321  1002346799999999999999999999999999   66777653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=94.64  E-value=0.16  Score=37.97  Aligned_cols=84  Identities=4%  Similarity=-0.012  Sum_probs=54.0

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHH-HHHHHHHHhcCCCCHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKS-LKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A-~~~~~~lL~~eP~N~QA~~   79 (128)
                      -+|+|+++.+..+   ..++++.+++.+....  ++.....++++.+|..+.++|+|++| ..+++..+.+-..... ..
T Consensus       199 ~~nlg~~y~~~~~---y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~-~~  274 (293)
T 2qfc_A          199 RYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM-HA  274 (293)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred             HHhHHHHHHHHhh---HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCc-Hh
Confidence            4677888876654   4477777777654420  11123578999999999999999999 8888877755322111 12


Q ss_pred             HHHHHHHHHhh
Q psy16295         80 LESIVKKRMET   90 (128)
Q Consensus        80 Lk~~Ie~~i~k   90 (128)
                      +.+.|+..+.+
T Consensus       275 ~~~~~~~~~~~  285 (293)
T 2qfc_A          275 YKEALVNKISR  285 (293)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHH
Confidence            35555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.57  E-value=0.18  Score=43.02  Aligned_cols=79  Identities=8%  Similarity=0.029  Sum_probs=64.7

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc----------hHHHHHHHHHHHhcCCCC
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE----------YTKSLKYCRAFLAIESEN   74 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd----------Y~~A~~~~~~lL~~eP~N   74 (128)
                      ++-.++.++...+  .++++..+.++..+ |   ..-..|+|-+....++++          |++|+.+++.+|+.+|.|
T Consensus        33 ~~~~~~~~~~~~~--eeal~~~~~~l~~n-P---~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~  106 (567)
T 1dce_A           33 QAVFQKRQAGELD--ESVLELTSQILGAN-P---DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS  106 (567)
T ss_dssp             HHHHHHHHTTCCS--HHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHcCCCC--HHHHHHHHHHHHHC-c---hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCC
Confidence            3444555554433  47899999999999 7   678899999999999999          999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q psy16295         75 SQVQHLESIVKKRME   89 (128)
Q Consensus        75 ~QA~~Lk~~Ie~~i~   89 (128)
                      .|+=.=+..+-.++.
T Consensus       107 y~aW~hR~w~l~~l~  121 (567)
T 1dce_A          107 YGTWHHRCWLLSRLP  121 (567)
T ss_dssp             HHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHcc
Confidence            999877777666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=94.51  E-value=0.081  Score=44.14  Aligned_cols=64  Identities=9%  Similarity=0.034  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIVK   85 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~Ie   85 (128)
                      .++++++.+..+..+-|   ..-..++-||..|..+|+|++|..++++.|++     -|+++..+.|...++
T Consensus       363 ~~~aL~i~~~~lG~~Hp---~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          363 GQKIIKPYSKHYPVYSL---NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHHHHSCSSCH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCh---HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            34455555555555534   56778999999999999999999999999986     499999999988765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=94.51  E-value=0.28  Score=37.70  Aligned_cols=73  Identities=10%  Similarity=0.158  Sum_probs=49.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHh-----cC-CCCH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLA-----IE-SENS   75 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~-----~e-P~N~   75 (128)
                      +++|.++....   +..++++.+++.++...  ++.......++.+|..+.++|+|++|+.+++..|+     .+ |...
T Consensus       188 ~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          188 SLFATNFLDLK---QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            44555555544   44577777777665420  10023446899999999999999999999999999     45 6554


Q ss_pred             HHHH
Q psy16295         76 QVQH   79 (128)
Q Consensus        76 QA~~   79 (128)
                      .+..
T Consensus       265 ~~~~  268 (383)
T 3ulq_A          265 QAYF  268 (383)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=94.49  E-value=0.2  Score=37.49  Aligned_cols=66  Identities=6%  Similarity=0.012  Sum_probs=48.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhh-chHHHHHHHHHHHhcC
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIK-EYTKSLKYCRAFLAIE   71 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklg-dY~~A~~~~~~lL~~e   71 (128)
                      -+|+++++.+..+   ..++++.+++.+.-..  .+.....++++.+|..++++| +|++|+.+++..|++-
T Consensus       199 ~~nlg~~y~~~~~---y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          199 RYNHAKALYLDSR---YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            4678888887664   4577777776655420  111245899999999999999 5799999999988753

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.42  E-value=0.22  Score=40.48  Aligned_cols=51  Identities=16%  Similarity=0.120  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhh-ccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295         21 KGILLLEELFK-TETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus        21 ~GI~LL~~l~~-~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      +++++++..++ .. |   ...+.++.++..+.+.|++++|+..++.+|++.|+|.
T Consensus       304 ~A~~~~~~Al~~~~-p---~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  355 (530)
T 2ooe_A          304 EAANIYERAISTLL-K---KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP  355 (530)
T ss_dssp             HHHHHHHHHTTTTC-S---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH
T ss_pred             HHHHHHHHHHHHhC-c---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc
Confidence            78999999997 45 6   5788899999999999999999999999999999986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.42  E-value=0.16  Score=43.39  Aligned_cols=67  Identities=13%  Similarity=0.229  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh--chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK--EYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg--dY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      ...+.++.++..++.+ |   .....|++-+....+++  +|++|+.+++.+|+.+|.|-.|=.=+..+-.++
T Consensus        88 ~~~~eL~~~~~~l~~~-p---K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l  156 (567)
T 1dce_A           88 LVKAELGFLESCLRVN-P---KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA  156 (567)
T ss_dssp             HHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence            3788999999999988 6   68899999999999999  669999999999999999998887776665544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=94.37  E-value=0.23  Score=37.20  Aligned_cols=67  Identities=10%  Similarity=0.081  Sum_probs=41.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~   73 (128)
                      +++|..+.+..+   ..++++.+++.+....  ++......+++.+|..+.++|+|++|+.+++..+++.|+
T Consensus       271 ~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  339 (406)
T 3sf4_A          271 YSLGNTYTLLQD---YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  339 (406)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc---HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            455555555443   3456666666554320  000234667788888888888888888888887777543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=94.27  E-value=0.087  Score=42.88  Aligned_cols=52  Identities=12%  Similarity=-0.009  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      ..+++.+++..++.. |   ...+.+..++--..++|++++|+..++..++..|.+
T Consensus       407 ~~~A~~~~e~al~~~-p---~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          407 KSVAFKIFELGLKKY-G---DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             hhHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            345555555555554 3   334555555555555555555555555555554444

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.20  E-value=0.092  Score=42.86  Aligned_cols=54  Identities=17%  Similarity=0.014  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh-hchHHHHHHHHHHHhcCCC
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI-KEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl-gdY~~A~~~~~~lL~~eP~   73 (128)
                      .|..++.++|+.-+.-+ |  ...-|..|++|-.+++. |||++|+++++..|+..|.
T Consensus       218 Gd~ekA~~~ferAL~Ln-P--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          218 GGMEKAHTAFEHLTRYC-S--AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             CCHHHHHHHHHHHHHHC-C--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CCHHHHHHHHHHHHHhC-C--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            47789999999999999 7  35599999999999995 9999999999999998887

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=93.85  E-value=0.21  Score=40.47  Aligned_cols=77  Identities=14%  Similarity=0.164  Sum_probs=56.0

Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc-hHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295          7 SFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE-YTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus         7 AwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd-Y~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      .|.|-+-..+ +..+.+++++.++..+ |   ..-.+|+|-.....+++. +++++.+++.+++.+|.|..|=.=+..+-
T Consensus       115 ~wlL~~l~~~-~~~~EL~~~~k~l~~d-p---rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll  189 (331)
T 3dss_A          115 CWLLSRLPEP-NWARELELCARFLEAD-E---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL  189 (331)
T ss_dssp             HHHHHHCSSC-CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHhccCcc-cHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            3555444322 4567888888888887 5   678888888888888888 58888888888888888888865555444


Q ss_pred             HHH
Q psy16295         86 KRM   88 (128)
Q Consensus        86 ~~i   88 (128)
                      .++
T Consensus       190 ~~l  192 (331)
T 3dss_A          190 PQL  192 (331)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=93.69  E-value=0.18  Score=40.93  Aligned_cols=66  Identities=14%  Similarity=0.252  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh--chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK--EYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg--dY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      ..+.+.+++.++..+ |   .....|++-.....+++  +|++++.+|+.+|+.+|.|-.|=.=+..+-...
T Consensus        90 l~~EL~~~~~~L~~~-P---Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l  157 (331)
T 3dss_A           90 VKAELGFLESCLRVN-P---KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA  157 (331)
T ss_dssp             HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            678999999999998 6   68999999999999999  499999999999999999999977666654443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=93.68  E-value=0.16  Score=41.26  Aligned_cols=69  Identities=6%  Similarity=-0.112  Sum_probs=39.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh-----chHHHHHHHHHHHhcCCCCHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK-----EYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg-----dY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      .|+++..+.....+.|..++++.++...+.+      ..+..|.|+..+. .|     |+++|+++++...   |++..+
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g------~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A  320 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD------QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA  320 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence            4555555333333556666666666655443      2556666666665 44     6666666666666   666655


Q ss_pred             HHHH
Q psy16295         78 QHLE   81 (128)
Q Consensus        78 ~~Lk   81 (128)
                      .--.
T Consensus       321 ~~~L  324 (452)
T 3e4b_A          321 DYYL  324 (452)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=93.17  E-value=0.42  Score=39.12  Aligned_cols=69  Identities=12%  Similarity=0.098  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh-h-chHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI-K-EYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET   90 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl-g-dY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k   90 (128)
                      +..+.+++++.++..+ |   ..-..+++-.....++ + ++++++.+++.+|+.+|.|..|=.-+.-+-.++.+
T Consensus       104 ~l~eEL~~~~~~L~~n-P---Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~  174 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQN-L---KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFST  174 (349)
T ss_dssp             CHHHHHHHHHHHHHTT-C---CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence            5778999999999998 6   6899999999999998 8 99999999999999999999998877777666544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=92.81  E-value=0.41  Score=36.34  Aligned_cols=68  Identities=10%  Similarity=-0.088  Sum_probs=47.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccC--cc--ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTET--ED--IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~--~~--~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      ++.++.+....   +..++++.+++.+....  ++  ......+++.+|..++..|+|++|+.+++..|++.|..
T Consensus        97 ~~la~~~~~~G---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  168 (373)
T 1hz4_A           97 IQQSEILFAQG---FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY  168 (373)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence            45566655544   44567777777665421  00  01345677789999999999999999999999988763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=92.53  E-value=0.52  Score=37.50  Aligned_cols=31  Identities=6%  Similarity=-0.090  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295         41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIE   71 (128)
Q Consensus        41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e   71 (128)
                      .+..|+++.++.++|++++|+++++..+.-.
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            5678888888888888888888888887543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=92.39  E-value=0.81  Score=38.63  Aligned_cols=67  Identities=10%  Similarity=0.026  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIVKKRM   88 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~Ie~~i   88 (128)
                      .++++++.+..+..+-|   ..-..++-||..|..+|+|++|..++++.|++     =|+++....+..++....
T Consensus       374 ~~~aL~i~~~~lG~~Hp---~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  445 (490)
T 3n71_A          374 ARRMVDGYMKLYHHNNA---QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE  445 (490)
T ss_dssp             HHHHHHHHHHHSCTTCH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            34555566666665534   57788999999999999999999999999975     699999998887776544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=92.24  E-value=0.55  Score=38.77  Aligned_cols=64  Identities=11%  Similarity=0.108  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHH
Q psy16295         21 KGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIVKKR   87 (128)
Q Consensus        21 ~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~Ie~~   87 (128)
                      +.+++.+..+..+-|   ..--.++-||..|..+|+|++|+.+++..|++     =|+++..+.+...++.-
T Consensus       354 ~~L~i~~~~lg~~Hp---~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~  422 (429)
T 3qwp_A          354 RTMEPYRIFFPGSHP---VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEEC  422 (429)
T ss_dssp             HHHHHHHHHSCSSCH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHcCCCCh---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            344444444444434   56778999999999999999999999998875     68999999887766553

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=92.10  E-value=0.3  Score=39.51  Aligned_cols=59  Identities=27%  Similarity=0.320  Sum_probs=45.8

Q ss_pred             HHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC--CCHHHHHHHHHH
Q psy16295         22 GILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES--ENSQVQHLESIV   84 (128)
Q Consensus        22 GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP--~N~QA~~Lk~~I   84 (128)
                      ++.-|++++..+ +   .....++++|..++..|+|++|++.+...+...|  ++..+..+.--|
T Consensus        85 a~~~l~~l~~~~-~---~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi  145 (310)
T 3mv2_B           85 NIEELENLLKDK-Q---NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV  145 (310)
T ss_dssp             CCHHHHHTTTTS-C---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-C---CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH
Confidence            567778877765 2   2355678999999999999999999999999887  666666555444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.09  E-value=0.77  Score=34.44  Aligned_cols=67  Identities=18%  Similarity=0.106  Sum_probs=46.6

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCcc---ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETED---IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI   70 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~---~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~   70 (128)
                      -|+-.-.|....--+++.--..+|-.+..++ |+   ....-+-++|+|-++|..++|.+|..++++.|+.
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~-~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN-PELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-TTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC-cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            3444455555555555555566666665554 32   1356679999999999999999999999997643

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.65  E-value=0.82  Score=30.20  Aligned_cols=66  Identities=14%  Similarity=0.168  Sum_probs=44.1

Q ss_pred             cCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295         13 SEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET   90 (128)
Q Consensus        13 S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k   90 (128)
                      |++.+-.++||+++..-+..+..  .+-.+     |+     .-|.+|+.++..+++.||+...-..+++.|.+=+.|
T Consensus        10 ~~~~~~~~~Ai~lv~~Ave~D~~--g~y~e-----Al-----~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~R   75 (83)
T 2w2u_A           10 SAQVMLEEMARKYAINAVKADKE--GNAEE-----AI-----TNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRR   75 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT--TCHHH-----HH-----HHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHh--ccHHH-----HH-----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            56677788999998887666521  11111     22     224566667788888899888877788887766554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=90.62  E-value=0.97  Score=37.61  Aligned_cols=67  Identities=10%  Similarity=0.068  Sum_probs=45.3

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhccCcccc---------------------------------------chHHHHHH
Q psy16295          6 YSFCLVRSEFCADIRKGILLLEELFKTETEDID---------------------------------------RKRDYLYY   46 (128)
Q Consensus         6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~---------------------------------------~~rd~LYy   46 (128)
                      -|+.++...++++..+++++|++.++.+ |+..                                       ...+-..|
T Consensus       202 ra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~  280 (372)
T 3ly7_A          202 QAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIY  280 (372)
T ss_dssp             HHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHH
Confidence            3667777778899999999999988888 6410                                       01111122


Q ss_pred             --HHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295         47 --LAIGNARIKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus        47 --LAvg~yklgdY~~A~~~~~~lL~~eP~   73 (128)
                        +|+.+.-.||+++|+.++++.|+++|+
T Consensus       281 ~alal~~l~~gd~d~A~~~l~rAl~Ln~s  309 (372)
T 3ly7_A          281 QIKAVSALVKGKTDESYQAINTGIDLEMS  309 (372)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence              444455568888888888888888875

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.43  E-value=2.3  Score=34.10  Aligned_cols=78  Identities=10%  Similarity=0.054  Sum_probs=59.4

Q ss_pred             HHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHH
Q psy16295          9 CLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH-LESIVKKR   87 (128)
Q Consensus         9 aLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~-Lk~~Ie~~   87 (128)
                      .|.++.   +...+|+.+++-+|.+ |   ..-+.--.|--=.+=.||+++|.+=++.+.+.+|+...... ++++|...
T Consensus         6 ~ll~~g---~L~~al~~~~~~VR~~-P---~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE   78 (273)
T 1zbp_A            6 NALSEG---QLQQALELLIEAIKAS-P---KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA   78 (273)
T ss_dssp             HHTTTT---CHHHHHHHHHHHHHTC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHhCC---CHHHHHHHHHHHHHhC-C---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence            344444   4557899999999998 6   33444444444467789999999999999999999988774 49999988


Q ss_pred             HhhhHH
Q psy16295         88 METEGL   93 (128)
Q Consensus        88 i~kdGl   93 (128)
                      +.|.-+
T Consensus        79 ~~R~~v   84 (273)
T 1zbp_A           79 QARKDF   84 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=88.59  E-value=2.4  Score=31.96  Aligned_cols=64  Identities=5%  Similarity=-0.125  Sum_probs=45.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccc--cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDI--DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIE   71 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~--~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~e   71 (128)
                      .++|+.+....   +..++...+++.+... +..  .....+++.+|..+...|+|++|+.+++..+++.
T Consensus       139 ~~la~~~~~~g---~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          139 RIRAQLLWAWA---RLDEAEASARSGIEVL-SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHT-TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CHHHHHHHHHHHHHHh-hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            34555555554   4557778887766553 100  1245788899999999999999999999999873

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.97  E-value=2.1  Score=34.68  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHH-------HhcCCCCHHHHHHHHHHH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAF-------LAIESENSQVQHLESIVK   85 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~l-------L~~eP~N~QA~~Lk~~Ie   85 (128)
                      +..+++..++.++..+ |   .+-+.+..|-.++++.|++.+|++.++.+       |-++| .+.-+.|.+.|-
T Consensus       186 ~~~~a~~~l~~~~~~~-P---~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P-~~~l~~l~~~il  255 (388)
T 2ff4_A          186 RASAVIAELEALTFEH-P---YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP-GPTLRALNERIL  255 (388)
T ss_dssp             CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHH
Confidence            3456788899998888 7   56778889999999999999999886664       45677 455556665554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=87.94  E-value=3.1  Score=28.00  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=37.2

Q ss_pred             hHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295         18 DIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus        18 d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      ++.++++.++.-.+.+      ..+..|.|+..|.+    .+|+++|+++++...+.  .+.++..
T Consensus        40 ~~~~A~~~~~~Aa~~g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~   97 (138)
T 1klx_A           40 NKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL   97 (138)
T ss_dssp             CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence            3444777777766654      35777888888887    78888888888877665  4555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=87.77  E-value=0.59  Score=38.85  Aligned_cols=64  Identities=9%  Similarity=0.009  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHhhc-------cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHHHH
Q psy16295         18 DIRKGILLLEELFKT-------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLESIV   84 (128)
Q Consensus        18 d~~~GI~LL~~l~~~-------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~~I   84 (128)
                      +..+++.++++.+..       +-|   ..-..+.-||..|..+|+|++|..+++..|++     =|+++.......-+
T Consensus       313 ~~~eA~~~~~~~L~i~~~~lg~~Hp---~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          313 SPSELLEICELSQEKMSSVFEDSNV---YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             CHHHHHHHHHHHHHHHTTTBCTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhCccChhch---HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            345667777665543       213   45678899999999999999999999999975     46666655544433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=87.77  E-value=1.5  Score=35.35  Aligned_cols=62  Identities=13%  Similarity=0.120  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHhhcc---------CccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTE---------TEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~---------~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      .+..++-+.|+.+.+..         .|   ...|.+.-+.+..+-+|+  +|.++++++.+.+|+++=...+.+.
T Consensus       225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p---~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k  295 (310)
T 3mv2_B          225 RNIAEAQGIVELLLSDYYSVEQKENAVL---YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI  295 (310)
T ss_dssp             TCHHHHHHHHHHHHSHHHHTTTCHHHHS---SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccccccccCCC---CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence            34556777777665542         14   578999777777777898  9999999999999999999888765

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=87.76  E-value=1.3  Score=36.08  Aligned_cols=57  Identities=11%  Similarity=-0.010  Sum_probs=49.0

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh-----hchHHHHHHHHHHHhcCCCC
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI-----KEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl-----gdY~~A~~~~~~lL~~eP~N   74 (128)
                      -..+.++..+++.-++-+ |+ -...-++-+|+.-|++.     ||.++|+++.++.|++.|++
T Consensus       176 l~~l~~A~a~lerAleLD-P~-~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~  237 (301)
T 3u64_A          176 PDTVHAAVMMLERACDLW-PS-YQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH  237 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred             HHhHHHHHHHHHHHHHhC-CC-cccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence            456778899999999988 62 23566999999999996     99999999999999999976

>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*

Probab=87.62  E-value=1.3  Score=38.89  Aligned_cols=49  Identities=14%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      .|-+.-.|-.++..|||.-|...++.++..||+|.+|+.|+.-.-+++.
T Consensus       449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~  497 (658)
T 2cfu_A          449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  497 (658)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            4667777888999999999999999999999999999999988776664

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=86.40  E-value=1.6  Score=32.77  Aligned_cols=37  Identities=11%  Similarity=0.204  Sum_probs=34.4

Q ss_pred             cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295         38 DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus        38 ~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      .++-.|+||++.-+.-.+||.+|.......++.-|++
T Consensus        11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~   47 (203)
T 3t5x_A           11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS   47 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence            5789999999999999999999999999999998865

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=85.18  E-value=1.4  Score=32.31  Aligned_cols=54  Identities=13%  Similarity=0.014  Sum_probs=44.2

Q ss_pred             ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhh---chHHHHHHHHHHHhcC-C
Q psy16295         15 FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIK---EYTKSLKYCRAFLAIE-S   72 (128)
Q Consensus        15 ~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklg---dY~~A~~~~~~lL~~e-P   72 (128)
                      +++++++.-+-.++-+..+ +   ...|..|-+|.+..+.+   ++.++...++.+++.+ |
T Consensus        10 ~~~~l~~~~~~y~~e~~~~-~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p   67 (152)
T 1pc2_A           10 SVEDLLKFEKKFQSEKAAG-S---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK   67 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHTT-C---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred             CHHHHHHHHHHHHHHHccC-C---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc
Confidence            5666666666666666655 3   57999999999999988   8999999999999999 7

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.40  E-value=3.5  Score=31.51  Aligned_cols=57  Identities=12%  Similarity=0.106  Sum_probs=43.4

Q ss_pred             hhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295         16 CADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP   72 (128)
                      ..+..+++.++++++....  ++....-+++..++-.|..+|||++|+.+.+..+.+.|
T Consensus       148 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          148 KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            3456788888888776521  11135678899999999999999999999999988743

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=84.15  E-value=0.96  Score=38.17  Aligned_cols=63  Identities=13%  Similarity=0.078  Sum_probs=44.8

Q ss_pred             hhHHHHHHHHHHHhhc-------cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhc-----CCCCHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKT-------ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAI-----ESENSQVQHLES   82 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~-------~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~-----eP~N~QA~~Lk~   82 (128)
                      .+..+++.++++.+..       +-|   ..-..+.-||..|..+|+|++|..+++..|++     -|+++.......
T Consensus       323 g~~~eA~~l~~~aL~~~~~~lg~~Hp---~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          323 GLYHEVVKLCRECLEKQEPVFADTNL---YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTBCTTSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3445666666655543       323   46778899999999999999999999999976     366666544433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=80.28  E-value=3.5  Score=34.24  Aligned_cols=55  Identities=4%  Similarity=-0.115  Sum_probs=47.0

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      .+..+|+..++.-+.-+ |    .-..+..++..+.-.|++++|...++..++++|..+.
T Consensus       291 gd~d~A~~~l~rAl~Ln-~----s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          291 GKTDESYQAINTGIDLE-M----SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             TCHHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             CCHHHHHHHHHHHHhcC-C----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            66778899999888887 5    2456678899999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	1e-29
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-10

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (254), Expect = 1e-29
 Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           ++FNY++ L++S    D R G+ +L +++K   E   R+R+ LYYL IG  ++ EY+ + 
Sbjct: 37  SRFNYAWGLIKSTDVNDERLGVKILTDIYK---EAESRRRECLYYLTIGCYKLGEYSMAK 93

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETE 91
           +Y       E  N QV  L+S+V+ +++ E
Sbjct: 94  RYVDTLFEHERNNKQVGALKSMVEDKIQKE 123

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 3e-10
 Identities = 44/90 (48%), Positives = 65/90 (72%), Gaps = 2/90 (2%)

Query: 2   TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSL 61
           TQF Y++CLVR+ +  DIRKGI+LLEEL    +++   +RDY++YLA+GN R+KEY K+L
Sbjct: 35  TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRLKEYEKAL 92

Query: 62  KYCRAFLAIESENSQVQHLESIVKKRMETE 91
           KY R  L  E +N+Q + LE ++ K M+ +
Sbjct: 93  KYVRGLLQTEPQNNQAKELERLIDKAMKKD 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	100.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.87
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.83
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.77
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.76
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.71
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.66
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.54
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.47
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.39
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.25
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.2
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.12
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.09
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.08
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.06
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.03
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.94
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.87
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.83
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.57
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.55
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.53
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.5
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.36
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.35
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.32
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.32
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.27
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.17
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	97.12
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.1
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.03
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.01
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	96.68
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.9
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.43
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	94.97
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.97
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	94.5
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	93.52
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	92.9
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	92.75
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	92.55
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	92.42
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	92.22
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	92.01
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	91.89
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	90.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	89.99
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.3
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	84.85
d1j2jb_	41	ADP-ribosylation factor binding protein Gga1 {Huma	81.23
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	80.4
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	80.24

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-35  Score=211.58  Aligned_cols=87  Identities=34%  Similarity=0.685  Sum_probs=84.9

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      |+|+|||||+||+++.|+++||.+|+++++.+ |  +++||||||||+||||+|||++|++|++.+|+++|+|+||+.|+
T Consensus        37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p--~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~  113 (124)
T d2pqrb1          37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-E--SRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  113 (124)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-G--GGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-c--hhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence            78999999999999999999999999999988 6  68999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy16295         82 SIVKKRMETE   91 (128)
Q Consensus        82 ~~Ie~~i~kd   91 (128)
                      ++|+++|+||
T Consensus       114 ~~Ie~~~~kd  123 (124)
T d2pqrb1         114 SMVEDKIQKE  123 (124)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999999998

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-22  Score=141.68  Aligned_cols=88  Identities=50%  Similarity=0.944  Sum_probs=82.7

Q ss_pred             hHHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          2 TQFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         2 ~~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      +.|||||+|++|+++.|.++||++|++++..+ |+ ..+.|++|+||++|+++|+|++|+++++.+|+++|+|.||+.|+
T Consensus        35 ~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~-~~-~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          35 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SK-EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc-CC-chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            57999999999999999999999999999876 31 35689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy16295         82 SIVKKRMETE   91 (128)
Q Consensus        82 ~~Ie~~i~kd   91 (128)
                      ..|+++++||
T Consensus       113 ~~I~~~~~ke  122 (122)
T d1nzna_         113 RLIDKAMKKD  122 (122)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHcCC
Confidence            9999999987

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.83  E-value=1.7e-08  Score=70.45  Aligned_cols=80  Identities=13%  Similarity=0.204  Sum_probs=71.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      .|.|.++.+-.+   ..++++.++..++.+ |   ....++|-+|.+|+++|+|++|+.+++..|+++|+|.++......
T Consensus        71 ~Nla~~~~~l~~---~~~Al~~~~~al~~~-p---~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~  143 (153)
T d2fbna1          71 LNLATCYNKNKD---YPKAIDHASKVLKID-K---NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  143 (153)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             hhHHHHHHHhcc---cchhhhhhhcccccc-c---hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            467888887764   567999999999998 7   678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q psy16295         84 VKKRMET   90 (128)
Q Consensus        84 Ie~~i~k   90 (128)
                      +..++.+
T Consensus       144 ~~~kl~~  150 (153)
T d2fbna1         144 CVNKLKE  150 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.1e-08  Score=64.53  Aligned_cols=84  Identities=15%  Similarity=0.187  Sum_probs=66.7

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCcc----ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETED----IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~----~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      .|+.+..+.+..   |..++|.-+++-++.. |.    .....+++++||.+++++|+|++|+.+++.+|+++|+|.++.
T Consensus         8 c~~lG~~~~~~g---~y~~A~~~~~~Al~~~-~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           8 SFELGKVAYTEA---DYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHHHH-hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            466777776655   5668888888876653 11    124579999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHhh
Q psy16295         79 HLESIVKKRMET   90 (128)
Q Consensus        79 ~Lk~~Ie~~i~k   90 (128)
                      .=...+++.+.|
T Consensus        84 ~Nl~~~~~~l~k   95 (95)
T d1tjca_          84 GNLKYFEYIMAK   95 (95)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCc
Confidence            877777776653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=3.2e-08  Score=70.13  Aligned_cols=80  Identities=9%  Similarity=0.186  Sum_probs=70.1

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      |.|.+..+   ..+..+++..++..++.+ |   ...+++|.+|.+++.+|+|++|+.+++.+++++|+|+.+......+
T Consensus        67 nla~~y~k---~~~~~~A~~~~~~al~~~-p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          67 NLAMCHLK---LQAFSAAIESCNKALELD-S---NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHH---TTCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHh---hhhcccccchhhhhhhcc-c---cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45666665   356779999999999999 7   6899999999999999999999999999999999999999998888


Q ss_pred             HHHHhhh
Q psy16295         85 KKRMETE   91 (128)
Q Consensus        85 e~~i~kd   91 (128)
                      ..++.+.
T Consensus       140 ~~~~~~~  146 (170)
T d1p5qa1         140 QQRIRRQ  146 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.71  E-value=7.1e-08  Score=67.50  Aligned_cols=80  Identities=21%  Similarity=0.279  Sum_probs=69.9

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +|.|.++.+..   +..++|..++..++-+ |   ...+.+|.+|.+++++|+|++|+.+++.+|+++|+|.++......
T Consensus        81 ~nla~~~~~~~---~~~~Ai~~~~~al~~~-p---~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~  153 (169)
T d1ihga1          81 LNIGACKLKMS---DWQGAVDSCLEALEID-P---SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  153 (169)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHTTC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhhc---ccchhhhhhhhhhhhh-h---hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45677777765   4558999999999998 7   678999999999999999999999999999999999999888888


Q ss_pred             HHHHHhh
Q psy16295         84 VKKRMET   90 (128)
Q Consensus        84 Ie~~i~k   90 (128)
                      +..++.+
T Consensus       154 ~~~~l~~  160 (169)
T d1ihga1         154 VKQKIKA  160 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.66  E-value=1.1e-07  Score=66.95  Aligned_cols=79  Identities=11%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295          5 NYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus         5 ~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      |.|.|+.+.   .+..++|+.++..++-+ |   ...+++|.+|.++..+|+|++|+..++.+|+++|+|.++......+
T Consensus        69 Nla~~~~~l---~~~~~Ai~~~~~al~l~-p---~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          69 NLAMCYLKL---REYTKAVECCDKALGLD-S---ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHh---hhcccchhhhhhhhhcc-c---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            566666664   46678999999999998 6   6899999999999999999999999999999999999998887777


Q ss_pred             HHHHhh
Q psy16295         85 KKRMET   90 (128)
Q Consensus        85 e~~i~k   90 (128)
                      ..++.+
T Consensus       142 ~~~~~~  147 (168)
T d1kt1a1         142 QKKAKE  147 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            766543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.7e-07  Score=61.47  Aligned_cols=75  Identities=12%  Similarity=-0.028  Sum_probs=47.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      .+.|+++.+..   +..++++.++..++.+ |   ...+.+|.+|..+.++|+|++|+.+++..++.+|+|+++..-...
T Consensus        41 ~~~a~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~  113 (117)
T d1elwa_          41 SNRSAAYAKKG---DYQKAYEDGCKTVDLK-P---DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  113 (117)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hcccccccccc---cccccchhhhhHHHhc-c---chhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34555555533   3345666666666666 4   455666777777777777777777777777777777666665554


Q ss_pred             HH
Q psy16295         84 VK   85 (128)
Q Consensus        84 Ie   85 (128)
                      ++
T Consensus       114 l~  115 (117)
T d1elwa_         114 ME  115 (117)
T ss_dssp             HH
T ss_pred             Hh
Confidence            44

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=8.2e-07  Score=61.17  Aligned_cols=80  Identities=11%  Similarity=0.107  Sum_probs=64.4

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      -+++|.++....   +..+++..++..++-+ |   ...+.++.+|..++.+|+|++|..+++..++++|+|.++.....
T Consensus        47 ~~~lg~~~~~~~---~~~~A~~~~~kal~~~-p---~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~  119 (159)
T d1a17a_          47 YGNRSLAYLRTE---CYGYALGDATRAIELD-K---KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  119 (159)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             hhhhHHHHHhcc---ccchHHHHHHHHHHHc-c---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            357777777775   4457899999988888 6   67888999999999999999999999999999999999887766


Q ss_pred             HHHHHHh
Q psy16295         83 IVKKRME   89 (128)
Q Consensus        83 ~Ie~~i~   89 (128)
                      .+...+.
T Consensus       120 ~~~~~~~  126 (159)
T d1a17a_         120 ECNKIVK  126 (159)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.39  E-value=1.9e-06  Score=56.84  Aligned_cols=76  Identities=8%  Similarity=0.146  Sum_probs=64.8

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .|+.+..+.+..   +..+++..+++.++.+ |   ...+.++.+|..+.++++|++|+.+.+.+++++|+|.++.-...
T Consensus        19 ~~~~g~~~~~~g---~~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la   91 (112)
T d1hxia_          19 PMEEGLSMLKLA---NLAEAALAFEAVCQKE-P---EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA   91 (112)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHh---hhHHHHHHHhhhcccc-c---ccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHH
Confidence            466777777654   4668999999999999 7   57899999999999999999999999999999999998776555


Q ss_pred             HHH
Q psy16295         83 IVK   85 (128)
Q Consensus        83 ~Ie   85 (128)
                      .+-
T Consensus        92 ~~y   94 (112)
T d1hxia_          92 VSH   94 (112)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.9e-06  Score=57.19  Aligned_cols=66  Identities=9%  Similarity=0.085  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKK   86 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~   86 (128)
                      .+..++|.+++..++.+ |   ...++++.+|.++.++|+|++|+.+++..++++|+|..+..-.-.+-.
T Consensus        17 g~~~eAi~~~~~al~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_          17 GNIDDALQCYSEAIKLD-P---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcC-C---cchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            35668999999999998 7   678999999999999999999999999999999999987665544433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2e-06  Score=59.29  Aligned_cols=68  Identities=10%  Similarity=0.147  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      .+..++|..++..+..+ |   ...++++.+|.+|.++|+|++|+.+++..|+++|+|.++.--+-.+-.++
T Consensus        18 g~~~~Ai~~~~kal~~~-p---~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1          18 RKYPEAAACYGRAITRN-P---LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             TCHHHHHHHHHHHHHHC-S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhC-C---CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            46678999999999998 7   67899999999999999999999999999999999999866555554333

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.4e-06  Score=61.03  Aligned_cols=74  Identities=9%  Similarity=0.060  Sum_probs=63.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      |+.|....++.   +..+++++++++++.+ |   ...+.++.+|..++++|+|++|+.+++.+++.+|++..+....-.
T Consensus         3 l~la~~~~~~G---~~~~A~~~~~~~l~~~-p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~   75 (388)
T d1w3ba_           3 MELAHREYQAG---DFEAAERHCMQLWRQE-P---DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGN   75 (388)
T ss_dssp             CTHHHHHHHHT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56666776665   5678999999999998 7   578999999999999999999999999999999999887655444


Q ss_pred             H
Q psy16295         84 V   84 (128)
Q Consensus        84 I   84 (128)
                      +
T Consensus        76 ~   76 (388)
T d1w3ba_          76 V   76 (388)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.12  E-value=7.9e-06  Score=56.40  Aligned_cols=82  Identities=10%  Similarity=0.125  Sum_probs=66.4

Q ss_pred             HHHHHHHHhccCC-------hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhc-----------hHHHHHHH
Q psy16295          3 QFNYSFCLVRSEF-------CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKE-----------YTKSLKYC   64 (128)
Q Consensus         3 ~F~YAwaLv~S~~-------~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgd-----------Y~~A~~~~   64 (128)
                      -++++.+|....+       .....++|+.++..++-+ |   ...+++|.++..+..+|+           |++|.+++
T Consensus        34 ~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P---~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~  109 (145)
T d1zu2a1          34 LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-P---KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF  109 (145)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-c---hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhh
Confidence            3566666665422       355678999999999998 7   689999999999998764           89999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         65 RAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        65 ~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      +..|+++|+|..+..-.....+..
T Consensus       110 ~kal~l~P~~~~~~~~L~~~~ka~  133 (145)
T d1zu2a1         110 QQAVDEQPDNTHYLKSLEMTAKAP  133 (145)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             hcccccCCCHHHHHHHHHHHHHHH
Confidence            999999999999887776666443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=7.1e-06  Score=56.25  Aligned_cols=68  Identities=9%  Similarity=0.063  Sum_probs=59.9

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKR   87 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~   87 (128)
                      ..+..++++.++..++-+ |   ...++++.+|..+.++|+|++|..+++..|+++|++.++...+-.+-..
T Consensus        23 ~~~y~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          23 AKDYENAIKFYSQAIELN-P---SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             TTCHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHhhhccccc-h---hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            345678999999999998 7   6899999999999999999999999999999999999998776555433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.4e-05  Score=57.63  Aligned_cols=69  Identities=10%  Similarity=-0.004  Sum_probs=50.0

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      +.+++++.+..   +..++++.+++.++.+ |   ...+.++.+|..+.++|+|++|+.+++..|+++|+|..+..
T Consensus       309 ~~l~~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~  377 (388)
T d1w3ba_         309 NNLANIKREQG---NIEEAVRLYRKALEVF-P---EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS  377 (388)
T ss_dssp             HHHHHHHHTTT---CHHHHHHHHHHHTTSC-T---TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             hHHHHHHHHCC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            34455554433   4557888888877777 5   45778888888888888888888888888888888876643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.4e-05  Score=58.45  Aligned_cols=72  Identities=15%  Similarity=0.245  Sum_probs=63.5

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      .|+.|..+.+..   +..+++..++..++.+ |   ...+.++.+|..+.++|+|++|+.+++.+++++|+|..+....
T Consensus        22 ~~~~g~~~~~~g---~~~~A~~~~~~al~~~-P---~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l   93 (323)
T d1fcha_          22 PFEEGLRRLQEG---DLPNAVLLFEAAVQQD-P---KHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL   93 (323)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHSC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C---CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccc
Confidence            578888888776   4568999999999998 7   6799999999999999999999999999999999998765543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=1.5e-05  Score=56.50  Aligned_cols=71  Identities=6%  Similarity=0.012  Sum_probs=50.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      |+.++++.+..   +..++++.++..++-+ |   ...+.++.+|..+.++|+|++|+.+++.+|+++|++..+..-+
T Consensus        41 ~~~G~~y~~~g---~~~~A~~~~~~al~l~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          41 YERGVLYDSLG---LRALARNDFSQALAIR-P---DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHhhccC-C---CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            44555555544   4457777787777777 5   5677888888888888888888888888888888877765433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=7e-06  Score=56.42  Aligned_cols=65  Identities=8%  Similarity=0.221  Sum_probs=56.8

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      ++.|.++.+..+   ..++|..++..++-+ |   ...+.+|.+|..++++|+|++|+.+++.+|+++|++.
T Consensus        42 ~~lg~~y~~~~~---~~~Ai~~~~~al~l~-p---~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          42 TNRALCYLKMQQ---PEQALADCRRALELD-G---QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHTTSC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HhHHHHHhhhhh---hhhhhHHHHHHHHhC-C---CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            567777777664   568999999999988 7   6788999999999999999999999999999999754

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=6.8e-06  Score=55.16  Aligned_cols=59  Identities=14%  Similarity=0.197  Sum_probs=53.1

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      .+..++|+.+++.+.-+ |   ...++++.+|..++++|+|++|+.+++..++++|++.++..
T Consensus        18 ~~y~~Ai~~y~~al~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_          18 KDFDTALKHYDKAKELD-P---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             TCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             CCHHHHHHHHHHHHHhC-c---ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            45678999999999998 7   57889999999999999999999999999999999987543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=6.7e-05  Score=52.95  Aligned_cols=79  Identities=5%  Similarity=-0.043  Sum_probs=65.9

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESI   83 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~   83 (128)
                      +++|.++.+..+   ..++++.++..++.+ |   ...+.++.++..++++|+|++|+.+++..++.+|++..+......
T Consensus        75 ~~lg~~~~~~g~---~~~A~~~~~~al~~~-p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  147 (259)
T d1xnfa_          75 NYLGIYLTQAGN---FDAAYEAFDSVLELD-P---TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYL  147 (259)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHC-T---TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhchHHHHHHH---HHHhhhhhhHHHHHH-h---hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            456666666554   558999999999998 6   578899999999999999999999999999999999988776666


Q ss_pred             HHHHHh
Q psy16295         84 VKKRME   89 (128)
Q Consensus        84 Ie~~i~   89 (128)
                      ...+..
T Consensus       148 ~~~~~~  153 (259)
T d1xnfa_         148 AEQKLD  153 (259)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=7.2e-05  Score=54.48  Aligned_cols=67  Identities=9%  Similarity=0.004  Sum_probs=46.5

Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          6 YSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         6 YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      +|..+.+..   +..+++..++..+..+ |   ...+.++.+|..+.++|+|++|+++++.+++++|+|..+..
T Consensus       178 l~~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~  244 (323)
T d1fcha_         178 LGVLFNLSG---EYDKAVDCFTAALSVR-P---NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY  244 (323)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHH---HHhhhhcccccccccc-c---ccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH
Confidence            344444443   3456777777777776 5   45677777888888888888888888888888887776644

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00012  Score=52.00  Aligned_cols=67  Identities=7%  Similarity=0.059  Sum_probs=50.6

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      ..|..++++.++++   . |   ...+.+|.++..|+++|+|++|+.+++..++++|++..+-..+-.+-.++.
T Consensus        18 ~~d~~~Al~~~~~i---~-~---~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          18 KKDWKGALDAFSAV---Q-D---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             TTCHHHHHHHHHTS---S-S---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHhc---C-C---CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            44566788887764   2 2   234678889999999999999999999999999999888877777654443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.55  E-value=0.00019  Score=48.92  Aligned_cols=89  Identities=8%  Similarity=0.053  Sum_probs=61.6

Q ss_pred             HHHHHHHhccCCh----hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC----H
Q psy16295          4 FNYSFCLVRSEFC----ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN----S   75 (128)
Q Consensus         4 F~YAwaLv~S~~~----~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N----~   75 (128)
                      .|.|.++..-.+.    .+.++++.+.........++.......+|-++..+.++|+|++|..+++..|++.|++    .
T Consensus        59 ~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~  138 (156)
T d2hr2a1          59 AGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  138 (156)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             HHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHH
Confidence            3566666655443    3444555555554444311001234568999999999999999999999999987765    6


Q ss_pred             HHHHHHHHHHHHHhhhH
Q psy16295         76 QVQHLESIVKKRMETEG   92 (128)
Q Consensus        76 QA~~Lk~~Ie~~i~kdG   92 (128)
                      +...+.+.+.+++++-|
T Consensus       139 ~~~~~~~~~~~~l~~lg  155 (156)
T d2hr2a1         139 GKERMMEVAIDRIAQLG  155 (156)
T ss_dssp             THHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            67889999998888744

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=0.00017  Score=53.68  Aligned_cols=70  Identities=11%  Similarity=0.063  Sum_probs=58.0

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH-H--HHHHHHHHhh
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH-L--ESIVKKRMET   90 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~-L--k~~Ie~~i~k   90 (128)
                      .+..++++.+.+..+.+ |   ...+.++.+|..+.++|+|++|+++++.+++++|.+.+.-. |  +-++|+++.+
T Consensus       256 ~~~~~a~~~~~~~~~~~-p---~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e~~~~~  328 (334)
T d1dcea1         256 QSELESCKELQELEPEN-K---WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK  328 (334)
T ss_dssp             HHHHHHHHHHHHHCTTC-H---HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhC-c---hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHhhHHHH
Confidence            56678999999999988 6   68899999999999999999999999999999999887632 3  3455555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00013  Score=51.80  Aligned_cols=63  Identities=6%  Similarity=0.017  Sum_probs=54.8

Q ss_pred             HHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295          8 FCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus         8 waLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      .+.++.. ..+..++++.++..++-+ |   ...+.++.+++.|+++|+|++|+..++..|...|.|.
T Consensus        42 lG~~~~~-~g~~~~A~~~~~kAl~ld-p---~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~  104 (192)
T d1hh8a_          42 IGCMYTI-LKNMTEAEKAFTRSINRD-K---HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  104 (192)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHH-cCCchhHHHHHHHHHHHh-h---hhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCc
Confidence            4445543 567889999999999998 6   6799999999999999999999999999999999885

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00037  Score=48.37  Aligned_cols=71  Identities=11%  Similarity=0.197  Sum_probs=51.9

Q ss_pred             hhHHHHHHHHHHHhhccCcc------------ccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETED------------IDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~------------~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      .+..++|+.+++.++-. |.            ......++..+|.+|+++|+|++|..+++.+|+++|+|..+...+-.+
T Consensus        27 ~~~~~Ai~~y~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  105 (170)
T d1p5qa1          27 GKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEA  105 (170)
T ss_dssp             TCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHh-hhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHH
Confidence            35556788777766542 10            011234455699999999999999999999999999999988777666


Q ss_pred             HHHH
Q psy16295         85 KKRM   88 (128)
Q Consensus        85 e~~i   88 (128)
                      -..+
T Consensus       106 ~~~~  109 (170)
T d1p5qa1         106 HLAV  109 (170)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            5444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.35  E-value=0.00042  Score=52.47  Aligned_cols=62  Identities=8%  Similarity=-0.022  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .+..++++.+++.++.+ |   ...+..+.|+..+++.|+|++|+..++..++.+|++.++..+..
T Consensus        10 G~l~eAl~~l~~al~~~-P---~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~   71 (264)
T d1zbpa1          10 GQLQQALELLIEAIKAS-P---KDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR   71 (264)
T ss_dssp             TCHHHHHHHHHHHHHTC-T---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            56778999999999999 7   78999999999999999999999999999999999998876544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00026  Score=47.63  Aligned_cols=62  Identities=13%  Similarity=0.023  Sum_probs=54.4

Q ss_pred             ChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh---hhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295         15 FCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR---IKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus        15 ~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk---lgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      +.++..++.+..+..+..+ |   ...+++|-+|.+.++   .+|+.+|++.++.+|+.+|.+.++..+
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~-p---~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~   75 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAG-S---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYV   75 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-C---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhhC-C---CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHH
Confidence            4678999999999999998 6   689999999999986   678889999999999999988776443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00029  Score=53.34  Aligned_cols=69  Identities=9%  Similarity=0.095  Sum_probs=48.1

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH   79 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~   79 (128)
                      ++.+|.+.+-.+.   .++++.++..++.+ |   ..-+.+++++..+.++++|++|+.+++.+|+++|.|..+-.
T Consensus       116 ~~~~~~~~~l~~~---~eAl~~~~kal~~d-p---~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~  184 (315)
T d2h6fa1         116 HHRRVLVEWLRDP---SQELEFIADILNQD-A---KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN  184 (315)
T ss_dssp             HHHHHHHHHHTCC---TTHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHhHHHHhhccH---HHHHHHHhhhhhhh-h---cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHH
Confidence            3456666554443   35777777777777 5   56777777777778888888888888888888887766543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.27  E-value=0.00057  Score=44.39  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=49.3

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFL   68 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL   68 (128)
                      +++|.++.+..   +..+++..++..+.-+ |   ...+.++-||+.+.++|++++|++++++.|
T Consensus        54 ~~lg~~~~~~~---~~~~A~~~~~~al~~~-p---~~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          54 RSLGLTQAENE---KDGLAIIALNHARMLD-P---KDIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhh---hHHHhhcccccccccc-c---ccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            45566665555   4558999999999999 7   678999999999999999999999999876

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.17  E-value=0.0015  Score=46.30  Aligned_cols=73  Identities=14%  Similarity=0.053  Sum_probs=58.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHH-------HhcCCCCHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAF-------LAIESENSQ   76 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~l-------L~~eP~N~Q   76 (128)
                      .+.+.++.+..   +..+++..++..+..+ |   ...+.++.+..+++++|++++|++.++.+       |.++|+ +.
T Consensus        71 ~~la~~~~~~g---~~~~Al~~~~~al~~~-P---~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~-~~  142 (179)
T d2ff4a2          71 TAKAEAEIACG---RASAVIAELEALTFEH-P---YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG-PT  142 (179)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHHS-T---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC-HH
T ss_pred             HHHHHHHHHCC---CchHHHHHHHHHHHhC-C---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC-HH
Confidence            45566666655   4458999999999999 7   68899999999999999999999999888       789997 44


Q ss_pred             HHHHHHHH
Q psy16295         77 VQHLESIV   84 (128)
Q Consensus        77 A~~Lk~~I   84 (128)
                      -+.|.+.|
T Consensus       143 l~~l~~~i  150 (179)
T d2ff4a2         143 LRALNERI  150 (179)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.17  E-value=0.00078  Score=46.36  Aligned_cols=48  Identities=23%  Similarity=0.319  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      ..++.-+|.+|+++|+|++|+.+++.+|+++|+|.++.-.+..+-..+
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l  111 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM  111 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHc
Confidence            344556999999999999999999999999999999877766654333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00053  Score=51.80  Aligned_cols=60  Identities=7%  Similarity=0.164  Sum_probs=43.1

Q ss_pred             hhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHH
Q psy16295         17 ADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHL   80 (128)
Q Consensus        17 ~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~L   80 (128)
                      .+..++++.++..++.+ |   ...+.+++++..+.++|+|++|+.+++.+++++|.|..+-.=
T Consensus        92 ~~~~eal~~~~~al~~~-p---~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~  151 (315)
T d2h6fa1          92 KDLHEEMNYITAIIEEQ-P---KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH  151 (315)
T ss_dssp             CCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH-H---hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHH
Confidence            35566777777777777 5   567777777777777777777777777777777777766443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.10  E-value=0.00076  Score=46.14  Aligned_cols=46  Identities=9%  Similarity=0.175  Sum_probs=39.1

Q ss_pred             chHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         39 RKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        39 ~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      ....+++.+|..+.++|+|++|+.+++.+|+++|+|..+.--+-.+
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~  120 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQG  120 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHH
Confidence            4566788899999999999999999999999999998875444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.03  E-value=0.00071  Score=46.11  Aligned_cols=47  Identities=17%  Similarity=0.191  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy16295         42 DYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRM   88 (128)
Q Consensus        42 d~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i   88 (128)
                      .+++=+|.+|+++|+|++|+.+++.+|+++|+|.++.--+-.+-..+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~l  114 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF  114 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHc
Confidence            35556999999999999999999999999999988766555554443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.01  E-value=0.00089  Score=45.58  Aligned_cols=59  Identities=10%  Similarity=0.013  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhh----------hchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARI----------KEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~ykl----------gdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ..+++..++..+..+ |   ...+.++.++..++++          +++++|+.+++..|+++|+|..+---.
T Consensus        13 fe~A~~~~e~al~~~-P---~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~l   81 (145)
T d1zu2a1          13 FEQIRQDAENTYKSN-P---LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCI   81 (145)
T ss_dssp             HHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC-C---cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhH
Confidence            468999999999999 7   6899999999999965          455889999999999999999876433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.68  E-value=0.0037  Score=46.04  Aligned_cols=81  Identities=12%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccccchHHHH-HHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDIDRKRDYL-YYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~L-YyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ++.+|++..-. ..+..+++..++..+..+ |   ...+.+ +.++..+...++|++|+.+++.+++++|+|..+...+.
T Consensus       111 ~~~~~~~~~~~-~~~~~~a~~~~~~al~~~-~---~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~  185 (334)
T d1dcea1         111 HHRCWLLSRLP-EPNWARELELCARFLEAD-E---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS  185 (334)
T ss_dssp             HHHHHHHHTCS-SCCHHHHHHHHHHHHHHC-T---TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH
T ss_pred             HHhhHHHHHhc-cccHHHHHHHHHHHHhhC-c---hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            35566666543 445678999999988887 5   445554 56678888899999999999999999999999987777


Q ss_pred             HHHHHHh
Q psy16295         83 IVKKRME   89 (128)
Q Consensus        83 ~Ie~~i~   89 (128)
                      .+-.++.
T Consensus       186 ~~~~~~~  192 (334)
T d1dcea1         186 CLLPQLH  192 (334)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHhc
Confidence            7765553

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0041  Score=40.85  Aligned_cols=82  Identities=11%  Similarity=0.100  Sum_probs=56.3

Q ss_pred             HHHHHHHHhccCChhhHHHHHHHHHHHhhccCccc----cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHH
Q psy16295          3 QFNYSFCLVRSEFCADIRKGILLLEELFKTETEDI----DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQ   78 (128)
Q Consensus         3 ~F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~----~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~   78 (128)
                      -++.|.++.+..   +..+++..++..+.-+ |+.    ...-.+++-++..+..+++|++|+.+++..|..+|+.....
T Consensus        41 ~~~~a~~~~~~~---~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~  116 (128)
T d1elra_          41 ITNQAAVYFEKG---DYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK  116 (128)
T ss_dssp             HHHHHHHHHHHT---CHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHhHHHHHHHcC---chHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHH
Confidence            467788888775   4457888888777655 310    01124677788888888999999999999999988765544


Q ss_pred             HHHHHHHHHHh
Q psy16295         79 HLESIVKKRME   89 (128)
Q Consensus        79 ~Lk~~Ie~~i~   89 (128)
                      .|.+ +++.++
T Consensus       117 ~l~~-~~k~lk  126 (128)
T d1elra_         117 KCQQ-AEKILK  126 (128)
T ss_dssp             HHHH-HHHHHH
T ss_pred             HHHH-HHHHHh
Confidence            4443 444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.90  E-value=0.0048  Score=43.56  Aligned_cols=43  Identities=7%  Similarity=-0.226  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295         40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus        40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      .-+++..++-.+.++|+|++|+.+++.+|+.+|.|.++-...-
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~  108 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLI  108 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHH
Confidence            4578899999999999999999999999999999998766543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0053  Score=38.62  Aligned_cols=35  Identities=11%  Similarity=0.033  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295         41 RDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus        41 rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      -|-.|.++..+|+.|||.+|..+.+..|++.|++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~   39 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE   39 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh
Confidence            45568999999999999999999999999988764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.042  Score=43.54  Aligned_cols=69  Identities=10%  Similarity=0.028  Sum_probs=58.5

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQH-LESIVKKRM   88 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~-Lk~~Ie~~i   88 (128)
                      ..+..+++..++..++-+ |   ...+.++.||+.+...|++.+|..++.+.|.+.|....|.. |..+.++..
T Consensus       165 ~~~~~~A~~~y~~A~~l~-P---~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         165 RNQTSQAESYYRHAAQLV-P---SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             TTCHHHHHHHHHHHHHHC-T---TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHHC-C---CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            456678999999999988 7   68899999999999999999999999999999999999854 455555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.97  E-value=0.012  Score=40.88  Aligned_cols=64  Identities=9%  Similarity=-0.084  Sum_probs=47.4

Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhhccCccc--cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCC
Q psy16295          7 SFCLVRSEFCADIRKGILLLEELFKTETEDI--DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESEN   74 (128)
Q Consensus         7 AwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~--~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N   74 (128)
                      |..++...   +..+++.++++.+... |+.  ..+-..++.++..++.+|+|++|+.+++..+++.|.+
T Consensus        19 A~~~~~~g---~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~   84 (366)
T d1hz4a_          19 AQVAINDG---NPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQH   84 (366)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence            44444444   4568999999988765 420  1223578889999999999999999999999876654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=94.50  E-value=0.06  Score=37.09  Aligned_cols=64  Identities=13%  Similarity=0.002  Sum_probs=46.7

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhc----cCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCC
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKT----ETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIES   72 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~----~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP   72 (128)
                      ++.|.++....+   ..+++..++..+..    +.+  ....+.++.+|..++++|++++|+++++..|++.|
T Consensus       255 ~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         255 RNIARAQILLGE---FEPAEIVLEELNENARSLRLM--SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC---HHHHHHHHHHHHHHHhhcccC--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            456666666554   44677777776532    111  25677899999999999999999999998887644

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.52  E-value=0.029  Score=37.49  Aligned_cols=55  Identities=9%  Similarity=-0.049  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHhhccC--ccc------cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCC
Q psy16295         19 IRKGILLLEELFKTET--EDI------DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESE   73 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~--~~~------~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~   73 (128)
                      ..++|+..++.+.-..  |+.      .....|++-+|.++.++|+|++|+..++..|++.|.
T Consensus        25 y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1          25 YDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            5568888877665430  100      013468888999999999999999999999988664

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.90  E-value=0.12  Score=37.29  Aligned_cols=60  Identities=13%  Similarity=-0.017  Sum_probs=45.4

Q ss_pred             hhhHHHHHHHHHHHhhccC--ccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295         16 CADIRKGILLLEELFKTET--EDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~--~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      ..+..++|+.++..+.-..  ++.....++++-+|-.+.++|+|++|+.+++.+++..|.+.
T Consensus       131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            3566678888876543310  10024467788999999999999999999999999999886

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=92.75  E-value=0.41  Score=30.78  Aligned_cols=50  Identities=12%  Similarity=0.029  Sum_probs=26.0

Q ss_pred             CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHh
Q psy16295         14 EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLA   69 (128)
Q Consensus        14 ~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~   69 (128)
                      ..+.+..++++.++.....+      ..+..|.|+.-|..    ..|+++|.++++..-+
T Consensus        34 ~~~~~~~~a~~~~~~aa~~g------~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~   87 (133)
T d1klxa_          34 NSQINKQKLFQYLSKACELN------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG   87 (133)
T ss_dssp             CTTSCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHhhhhccc------chhhhhhHHHhhhhccccchhhHHHHHHHhhhhc
Confidence            34445555665555554443      23445555555554    4555666666555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.083  Score=41.74  Aligned_cols=46  Identities=15%  Similarity=0.061  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy16295         40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVK   85 (128)
Q Consensus        40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie   85 (128)
                      ..+|+++|+..+...++|++|+.+++..+++.|+|..+-.-.-.|-
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA  196 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            3579999999999999999999999999999999998876666654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=92.42  E-value=0.07  Score=37.41  Aligned_cols=73  Identities=5%  Similarity=0.013  Sum_probs=46.9

Q ss_pred             hHHHHHHHHhcc-CChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCCCHH
Q psy16295          2 TQFNYSFCLVRS-EFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESENSQ   76 (128)
Q Consensus         2 ~~F~YAwaLv~S-~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~N~Q   76 (128)
                      ++|+++...... ..++|.++++..++...+.+.      .+-.|.|+..|++    .+|+++|.++.+..-+.-  +..
T Consensus       180 A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~------~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~  251 (265)
T d1ouva_         180 GCFNAGNMYHHGEGATKNFKEALARYSKACELEN------GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKG  251 (265)
T ss_dssp             HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHH
T ss_pred             cccchhhhcccCcccccchhhhhhhHhhhhcccC------HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHH
Confidence            356666555542 335677788888877766652      4566777777776    457888888888775554  444


Q ss_pred             HHHHHH
Q psy16295         77 VQHLES   82 (128)
Q Consensus        77 A~~Lk~   82 (128)
                      |.....
T Consensus       252 A~~~l~  257 (265)
T d1ouva_         252 ACDILK  257 (265)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544443

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.2  Score=30.94  Aligned_cols=66  Identities=14%  Similarity=0.289  Sum_probs=46.4

Q ss_pred             cCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHhh
Q psy16295         13 SEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV-QHLESIVKKRMET   90 (128)
Q Consensus        13 S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA-~~Lk~~Ie~~i~k   90 (128)
                      |++...+.+|++++.+-+..+..  .+-.+     |+     .-|.+|..++-.+++.+|+|++. ..+++.|..=+.|
T Consensus         2 s~~~~~l~~A~~l~~~Av~~D~~--~~y~~-----A~-----~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~R   68 (77)
T d1wr0a1           2 SSTSPNLQKAIDLASKAAQEDKA--GNYEE-----AL-----QLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR   68 (77)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHT--TCCSS-----HH-----HHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHHHc--CCHHH-----HH-----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            56778889999999987776521  11122     22     23678888899999999999874 4677777765554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.01  E-value=0.41  Score=34.25  Aligned_cols=70  Identities=6%  Similarity=-0.024  Sum_probs=48.6

Q ss_pred             HHHHHHHhccCChhhHHHHHHHHHHHhhccCccc----cchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHH
Q psy16295          4 FNYSFCLVRSEFCADIRKGILLLEELFKTETEDI----DRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQV   77 (128)
Q Consensus         4 F~YAwaLv~S~~~~d~~~GI~LL~~l~~~~~~~~----~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA   77 (128)
                      .+.|+.+....   +..++++.++++.+.. +..    ......+..+++.+...+++++|.+.++..++++|.....
T Consensus       162 ~~la~~~~~~g---~y~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s  235 (290)
T d1qqea_         162 IKCADLKALDG---QYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (290)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHcC---hHHHHHHHHHHHHHhC-ccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence            45677777765   5668999999988775 210    1234567778888999999999999999999999977654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=0.17  Score=36.69  Aligned_cols=53  Identities=11%  Similarity=0.080  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHH-HhhhhchHHHHHHHHHHHhcCCCCH
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIG-NARIKEYTKSLKYCRAFLAIESENS   75 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg-~yklgdY~~A~~~~~~lL~~eP~N~   75 (128)
                      +.+++++++..++.. |   ...+.+...|.- ++..|+++.|++.++.+|+..|++.
T Consensus       150 ~~~ar~i~~~al~~~-~---~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         150 IKSGRMIFKKAREDA-R---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HHHHHHHHHHHHTST-T---CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH
Confidence            345555555555554 3   233333333332 2334555555555555555555554

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.13  E-value=0.33  Score=39.45  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295         40 KRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET   90 (128)
Q Consensus        40 ~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k   90 (128)
                      -.|-+--.|-.++..|||.-|...++.++..||+|.+|+.|+.-+-+++..
T Consensus       429 G~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~  479 (505)
T d2cfua2         429 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY  479 (505)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            366677778899999999999999999999999999999999888777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.99  E-value=2.3  Score=30.22  Aligned_cols=68  Identities=7%  Similarity=-0.076  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q psy16295         19 IRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRME   89 (128)
Q Consensus        19 ~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~   89 (128)
                      ..++..+++..+... |  ......+-.++-...+.+++++|++.++..++..|.+.+.-.-...++....
T Consensus       115 ~~~a~~i~~~~l~~~-~--~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~  182 (308)
T d2onda1         115 YEKVHSIYNRLLAIE-D--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS  182 (308)
T ss_dssp             HHHHHHHHHHHHTSS-S--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHh-c--CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence            445666777777665 4  2333333344455557778888888888888888877765554444444443

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.30  E-value=1.2  Score=28.12  Aligned_cols=66  Identities=20%  Similarity=0.222  Sum_probs=45.8

Q ss_pred             cCChhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q psy16295         13 SEFCADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLESIVKKRMET   90 (128)
Q Consensus        13 S~~~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~Ie~~i~k   90 (128)
                      |....+..++|+++..-+..+..  .+     |-.|+-     -|.+|+.++-.+++.+|+-.....|++.|.+=+.|
T Consensus         6 s~~~~~~~~A~~l~~~Av~~D~~--g~-----y~eA~~-----~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~R   71 (93)
T d1wfda_           6 SGQDSDSTAAVAVLKRAVELDAE--SR-----YQQALV-----CYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDR   71 (93)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHT--TC-----HHHHHH-----HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHc--CC-----HHHHHH-----HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence            34445667888888887666521  11     223333     35677888888999999999888888888877665

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=84.85  E-value=0.76  Score=31.71  Aligned_cols=58  Identities=14%  Similarity=0.074  Sum_probs=41.2

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhh----hhchHHHHHHHHHHHhcCCCCHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNAR----IKEYTKSLKYCRAFLAIESENSQVQHLE   81 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yk----lgdY~~A~~~~~~lL~~eP~N~QA~~Lk   81 (128)
                      ..|..++++.++...+.+      ..++.|.|+..++.    .+||++|..+++...+  +.++.+....
T Consensus        15 ~~d~~~A~~~~~kAa~~g------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l   76 (265)
T d1ouva_          15 EKDFTQAKKYFEKACDLK------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLL   76 (265)
T ss_dssp             TTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhcc
Confidence            457788888888876655      35788888888876    6788888888877554  4466665443

>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: GAT domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.23  E-value=0.6  Score=26.12  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.9

Q ss_pred             HHhccCChhhHHHHHHHHHHHhhcc
Q psy16295          9 CLVRSEFCADIRKGILLLEELFKTE   33 (128)
Q Consensus         9 aLv~S~~~~d~~~GI~LL~~l~~~~   33 (128)
                      -|.+|++|+|.+.+=.|....++++
T Consensus        13 ~LLkS~~PeDLqaANrLIK~mVked   37 (41)
T d1j2jb_          13 RLLKSSHPEDLRAANKLIKEMVQED   37 (41)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999886

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=80.40  E-value=0.95  Score=33.12  Aligned_cols=35  Identities=3%  Similarity=-0.002  Sum_probs=30.6

Q ss_pred             HHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy16295         50 GNARIKEYTKSLKYCRAFLAIESENSQVQHLESIV   84 (128)
Q Consensus        50 g~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~~I   84 (128)
                      -+.+.|++++|+..++..++.+|+|..+....-.+
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~l   39 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIEL   39 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            35788999999999999999999999988766554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=80.24  E-value=3.2  Score=26.19  Aligned_cols=57  Identities=12%  Similarity=0.015  Sum_probs=36.2

Q ss_pred             hhhHHHHHHHHHHHhhccCccccchHHHHHHHHHHHhhhhchHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy16295         16 CADIRKGILLLEELFKTETEDIDRKRDYLYYLAIGNARIKEYTKSLKYCRAFLAIESENSQVQHLES   82 (128)
Q Consensus        16 ~~d~~~GI~LL~~l~~~~~~~~~~~rd~LYyLAvg~yklgdY~~A~~~~~~lL~~eP~N~QA~~Lk~   82 (128)
                      ++|..++++.++.-.+.+.      .+..|.|+  ..-..|+++|.++++..-  +.+|..+.-..-
T Consensus         6 ~kd~~~A~~~~~kaa~~g~------~~a~~~l~--~~~~~~~~~a~~~~~~aa--~~g~~~a~~~Lg   62 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNE------MFGCLSLV--SNSQINKQKLFQYLSKAC--ELNSGNGCRFLG   62 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTC------TTHHHHHH--TCTTSCHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCC------hhhhhhhc--cccccCHHHHHHHHhhhh--cccchhhhhhHH
Confidence            5788888888888777663      23445443  445678888888877653  334555544433