Psyllid ID: psy16313

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------102
MVLEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPCDPAPNSPSPSPRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQDSAKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVSIPCSFIQMLLKTDTQVEKTFNIFKGALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPCDPAPNSPSPSPRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQDSAKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMVQKFTQLTKDNIHKSLEKINSQGTEYANHVLNRRGSLKMQTAATSTKIVRNLNEFLNFSKKIALNREIREAEDHLVKKIESMNSQVKLLVESSPEDDDSSEYFPMTCSITQELRLELENLNRNVLQDPEPQLADDIESGFESTNSSHAQYHLTGDEIFIWENPLDETKDSALPESCSAHSIASNKSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHVINSRQSRVGLPPPNEFGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFHLSCPLSISLM
ccccccccccEEEHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccHHHHHHHHccccccccccccccccccccccHHHHHHHcccccccccHHHHHHHHHcccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccc
ccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccEEcEcccccccccccccccccccccccccHEHEEEcccccccccccccccccccHHHHHHHccccccccccccccHHHHccccccHccccccccccEEEEEccccccccHcEcccccccccHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHccHHHHHHHcccccEEEHHccccccccccccccHHcccccEEEccccccccEHHHHHccccHHHcccccHHHHHcccccccccccccccccEccccccccccccccccccccHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccEEcccccccccccccccccccccccccccHHHHHEccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccEEEEcccccccccHHHccccccccccccHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccEEEcccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHccHHHHcccccHHHHccccccEEEEEcccccccHcccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccc
mvlekekaDDLLYCYRWLLLEMKREFAFNDALIMLEVMwsslppnppqgelplydvkfeppcdpapnspspsprenqytKVCAIrrqttsatsspfklnatldesplaqrrkqdsaksrtypcvnetkiistngilkscasgpqspqqsmkydgmqqsecrkfsvdpqitSYEVLYSLLAKAFDVRKEFSICYRVlddcnqetflpllsdYELDAAIqnasdpclclridfvdtlssgldqdvaecvqpesslslmsftqtkvPLKLQgliknqvsipcSFIQMLLKTDTQVEKTFNIFKGALSYMEDNmaalylpprsplndtefrqfldpvgqiiqsRELRTVIYYGGIEPSLRRVVWKHILNvypegmsgkermeYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVrkdvlrtdrhhvfyagaddncnvISLFNILTTyalnhpavsycqgmsdlaspllvtMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMwsslppnppqgelplydvkfeppcdpapnspspsprenqytKVCAIrrqttsatsspfklnatldesplaqrrkqdsaksrtypcvnetkiistngilkscasgpqspqqsMVQKFTQLTKDNIHKSLEKINSQGTEYANHVlnrrgslkmqtAATSTKIVRNLNEFLNFSKKIALNREIREAEDHLVKKIESMNSQVKLLVEsspedddsseyfpmtcSITQELRLELENLNrnvlqdpepqladdiesgfestnsshaqyhltgdeifiwenpldetkdsalpescsahsiasnkssfesdndmtqsyssttsgadsihsgdssqQIREVAHssfesdndmtqsyssttsgadsihsgdssQQIREVAHVINSrqsrvglpppnefgggnpFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFHLscplsislm
mvlekekaddllYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPCDPapnspspspreNQYTKVCAIRRqttsatsspfklnatldesplaqrrkqdsaksrtypcvnetKIISTNGILKSCASGPQSPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVSIPCSFIQMLLKTDTQVEKTFNIFKGALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVgqiiqsrelRTVIYYGgiepslrrvVWKHILnvypegmsgkermeytrrkseeyyKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFyagaddncnVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPCDPapnspspspreNQYTKVCAIRRqttsatsspfklnatldesplaqrrkqdsaksrtypcvneTKIISTNGILKSCASGPQSPQQSMVQKFTQLTKDNIHKSLEKINSQGTEYANHVLNRRGSLKMQTAATSTKIVRNLNEFLNFSKKIALNREIREAEDHLVKKIESMNSQVKLLVEsspedddsseYFPMTCSITQELRLELENLNRNVLQDPEPQLADDIESGFESTNSSHAQYHLTGDEIFIWENPLDETKDSALPESCSAHSiasnkssfesdNDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHVINSRQSRVGLPPPNEFGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFhlscplsislm
MVLEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEppcdpapnspspspRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQDSAKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVSIPCSFIQMLLKTDTQVEKTFNIFKGALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEppcdpapnspspspRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQDSAKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMVQKFTQLTKDNIHKSLEKINSQGTEYANHVLNRRGSLKMQTAATSTKIVRNLNEFLNFSKKIALNREIREAEDHLVKKIESMNSQVKLLVesspedddsseYFPMTCSITQelrlelenlnrnVLQDPEPQLADDIESGFESTNSSHAQYHLTGDEIFIWENPLDETKDSALPESCSAHSIASNKSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHVINSRQSRVglpppnefgggnpflMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFHLSCPLSISLM
*********DLLYCYRWLLLEMKREFAFNDALIMLEVMWSS********************************************************************************PCVNETKIISTNGIL**************************FSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVSIPCSFIQMLLKTDTQVEKTFNIFKGALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEG**************EEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSS********************************************************************************PCVNETKIISTNGIL******************************************HVL*********TAATSTKIVRNLNEFLNFSKKIALNREIRE****L***************************FPMTCSITQELRLEL*******************************QYHLTGDEIFIWEN*****************************************************************************************************************FGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFHLSCPL*****
******KADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYD**************************************************************************************************GMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLC*************************************************************************************************TEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYD********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NEFGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFHLSC*******
********DDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPCD***************TKVCAIRRQTTSATSSPFKLNATLDES**************TYPCVNETKIISTNGILKSC*********************RKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVSIPCSFIQMLLKTDTQVEKTFNIFKGALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPCD***************TKVCAIRRQTTSATSSPFKLNATLDES**************TYPCVNETKIISTNGILKSC************QKFTQLTKDNIHKSLEKINSQGTEYANHVLNRRGSLKMQTAATSTKIVRNLNEFLNFSKKIALNREIREAEDHLVKKIESMNSQVKL***********SEYFPMTCSITQELRLELENLNRNVLQDPEPQLADDIESGFESTNSSHAQYHLTGDEIFIWENPLDETK**************************************************EVAHS*****************************QIREVAHVINSRQSRVGLPPPNEFGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFHLSCPLSISLM
*******ADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPC*************NQYTKVCAIRRQ***********************************************ILKSCASGPQSPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVSIPC***QMLL******EKTFNIFKGALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEP****************QYTKVCAIRR*****************************************************************QKFTQ**K*NI******************************ATSTKIVRNLNEFLNFSKKIALNR*******HLVKKIESMNSQVKLLVESSPEDDDSSEYFPMTCSITQELRLELENLNRNVLQDPEPQLADDIESGFE*TNSSHAQYHLTGDEIFIWENPLDETK***************************************************************************************************VGLPPPNEFGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFH**********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVLEKEKADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPCDPAPNSPSPSPRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQDSAKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMKYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSDYELDAAIQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVSIPCSFIQMLLKTDTQVEKTFNIFKGALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDVKFEPPCDPAPNSPSPSPRENQYTKVCAIRRQTTSATSSPFKLNATLDESPLAQRRKQDSAKSRTYPCVNETKIISTNGILKSCASGPQSPQQSMVQKFTQLTKDNIHKSLEKINSQGTEYANHVLNRRGSLKMQTAATSTKIVRNLNEFLNFSKKIALNREIREAEDHLVKKIESMNSQVKLLVESSPEDDDSSEYFPMTCSITQELRLELENLNRNVLQDPEPQLADDIESGFESTNSSHAQYHLTGDEIFIWENPLDETKDSALPESCSAHSIASNKSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHSSFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHVINSRQSRVGLPPPNEFGGGNPFLMFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYLSAFHLSCPLSISLM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1018 2.2.26 [Sep-21-2011]
A1A5B6742 TBC1 domain family member yes N/A 0.385 0.528 0.462 1e-101
Q3MII6688 TBC1 domain family member yes N/A 0.385 0.569 0.470 1e-100
Q9CXF4671 TBC1 domain family member no N/A 0.235 0.357 0.366 1e-41
Q8TC07691 TBC1 domain family member no N/A 0.235 0.347 0.358 5e-40
Q8BYH7645 TBC1 domain family member no N/A 0.238 0.376 0.349 1e-37
Q9HA65648 TBC1 domain family member no N/A 0.238 0.375 0.357 2e-37
Q8TBP0767 TBC1 domain family member no N/A 0.226 0.301 0.351 6e-29
P09379730 GTPase-activating protein yes N/A 0.228 0.319 0.291 1e-28
Q9UUH7743 GTPase-activating protein yes N/A 0.259 0.355 0.288 5e-26
Q6FWI1745 GTPase-activating protein yes N/A 0.236 0.323 0.283 3e-25
>sp|A1A5B6|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1 Back     alignment and function desciption
 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/417 (46%), Positives = 265/417 (63%), Gaps = 25/417 (5%)

Query: 159 ECRKFSVDPQITSYEVLYSLLAKAFDV--RKEFSICYRVLDDCNQETFLPLLSDYELDAA 216
           E R F+VDPQITS +VL  +L +AFD+  +K F I Y   D   QETFL LLSD++L  A
Sbjct: 104 EFRSFAVDPQITSLDVLQHILIRAFDLNGKKNFGISYLARDRLGQETFLSLLSDWDLSTA 163

Query: 217 IQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTKVPLKLQGLIKNQVS 276
              AS P L LR+D   +  S L +D  + + P+  +     +   +  K   L    + 
Sbjct: 164 FATASKPYLQLRVDIRPSEDSPLLEDW-DIISPKDVIG----SDVLLAEKRSSLTTAALP 218

Query: 277 IPCSFIQMLLKTDTQVEKTFNIFKGALSYMEDNMAALYLPPRSPLNDTEFRQFLDPVGQI 336
              S +  + +T ++V++  +      SY ED       P + PL+D EF  +L+  GQ+
Sbjct: 219 FTQSILSQVGRTLSKVQQVLS-----WSYGEDVK-----PFKPPLSDAEFHTYLNHEGQL 268

Query: 337 IQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKD 396
            +  ELR  IY+GG+EPSLR+VVW+++LNVYP+G++G+ERM+Y +RKS EY +L+  W  
Sbjct: 269 SRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEW-- 326

Query: 397 LLKRGQMVG--DLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAV 454
                Q V   DL ++   V KDVLRTDR H +YAG +D  ++ +L ++LTTYA+ HP V
Sbjct: 327 ----AQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQV 382

Query: 455 SYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYH 514
           SYCQGMSDLASP+L  M +E HA++CFC +M+RL  NF  DG  M  +F HL   L +  
Sbjct: 383 SYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHAD 442

Query: 515 PKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPL 571
           P FY+YL+   ADDL +CYRWLLLE+KREFAF+DAL MLEV WSSLPP+PP+ E+ L
Sbjct: 443 PDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVEL 499
May act as a GTPase-activating protein for Rab family protein(s).
Mus musculus (taxid: 10090)
>sp|Q3MII6|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2 Back     alignment and function description
>sp|Q9CXF4|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1 Back     alignment and function description
>sp|Q8TC07|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2 Back     alignment and function description
>sp|Q8BYH7|TBC17_MOUSE TBC1 domain family member 17 OS=Mus musculus GN=Tbc1d17 PE=2 SV=2 Back     alignment and function description
>sp|Q9HA65|TBC17_HUMAN TBC1 domain family member 17 OS=Homo sapiens GN=TBC1D17 PE=1 SV=2 Back     alignment and function description
>sp|Q8TBP0|TBC16_HUMAN TBC1 domain family member 16 OS=Homo sapiens GN=TBC1D16 PE=2 SV=1 Back     alignment and function description
>sp|P09379|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2 Back     alignment and function description
>sp|Q9UUH7|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1 Back     alignment and function description
>sp|Q6FWI1|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1018
189237968931 PREDICTED: similar to CG8155 CG8155-PA [ 0.788 0.862 0.443 0.0
345491869877 PREDICTED: TBC1 domain family member 25- 0.797 0.925 0.458 0.0
345491867863 PREDICTED: TBC1 domain family member 25- 0.783 0.924 0.455 0.0
307212715882 TBC1 domain family member 25 [Harpegnath 0.792 0.914 0.450 0.0
380023430878 PREDICTED: LOW QUALITY PROTEIN: TBC1 dom 0.781 0.906 0.445 0.0
328792617878 PREDICTED: TBC1 domain family member 25 0.781 0.906 0.444 0.0
350412981868 PREDICTED: TBC1 domain family member 25- 0.781 0.917 0.446 0.0
307183654886 TBC1 domain family member 25 [Camponotus 0.788 0.906 0.449 0.0
383861900915 PREDICTED: TBC1 domain family member 25- 0.813 0.904 0.439 0.0
328792619886 PREDICTED: TBC1 domain family member 25 0.781 0.898 0.442 0.0
>gi|189237968|ref|XP_001811946.1| PREDICTED: similar to CG8155 CG8155-PA [Tribolium castaneum] gi|270008039|gb|EFA04487.1| hypothetical protein TcasGA2_TC014792 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/953 (44%), Positives = 562/953 (58%), Gaps = 150/953 (15%)

Query: 151  KYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSD 210
            KY+G Q  E RKFSVDPQITS+EVL S+LAKAFD++ +F+ICYR+ D    ET++PLLSD
Sbjct: 18   KYEGAQPPELRKFSVDPQITSFEVLQSILAKAFDLKGDFAICYRLYDVSGHETYMPLLSD 77

Query: 211  YELDAA--------IQNASDPCLCLRIDFVDTLSSGLDQDVAECVQPESSLSLMSFTQTK 262
            ++LDAA        + N+++PCLCLR+D         D ++ + +   + +   +  + K
Sbjct: 78   WDLDAAFLKAYNMSVGNSTEPCLCLRVDLKPFEECSDDWELKQNLPIITQIRTSTCQEAK 137

Query: 263  VPLKLQGLIKNQVSIPCSFIQMLLKTDTQVEKTFNIFKGALSYMEDNMAALYLPPRSPLN 322
               +L G+                    Q+ KTFN+ + A  ++ D+  A   PPR PL+
Sbjct: 138  PSPRLHGIF------------------NQMGKTFNLVQRA--FLGDDANAPLQPPRPPLS 177

Query: 323  DTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRR 382
            D+EFR FLDPVGQII ++ELR VIY+GGI+PSLR+VVWKH+LNVYPEGM+G+ERM+Y +R
Sbjct: 178  DSEFRSFLDPVGQIIYAKELRNVIYFGGIDPSLRKVVWKHLLNVYPEGMTGRERMDYIKR 237

Query: 383  KSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFN 442
            K+ EY  LR+TWK  + +G + G+LAY TGMVRKDVLRTDRHH FYAG+DDN N+ SLFN
Sbjct: 238  KAAEYVTLRETWKAAIAQGPVAGELAYTTGMVRKDVLRTDRHHPFYAGSDDNQNIASLFN 297

Query: 443  ILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQR 502
            ILTTYALNHP VSYCQGMSDLASPLLVTM++EAHAYICFCALM+RL  NF++DGI MTQ+
Sbjct: 298  ILTTYALNHPKVSYCQGMSDLASPLLVTMNDEAHAYICFCALMQRLSTNFMIDGIAMTQK 357

Query: 503  FQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPP 562
            F HLA+GL YY P+FY YLK HQADDLL+CYRWLLLEMKREFAF D+L MLEV+WSSLPP
Sbjct: 358  FTHLAEGLMYYDPEFYNYLKLHQADDLLFCYRWLLLEMKREFAFEDSLRMLEVLWSSLPP 417

Query: 563  NPPQGELPLYDVKFEPPCDPAPNSP-SPSPRENQYTKVCAIRRQTTSATSSPF------- 614
             PP  EL LYD++F+P     P SP   +PREN YTKVCA+RRQ++S + S +       
Sbjct: 418  YPPDNELKLYDIQFQPITATPPMSPLVKTPRENAYTKVCALRRQSSSISLSNYTTKKSGT 477

Query: 615  --KLNATLDES-----------PLAQRRKQDSAKSR--------TYPCVNETK------- 646
              + N +LDE+            L  +   D+A SR        T+P   E K       
Sbjct: 478  VKRQNHSLDETISKSRNNIVDIKLKHQSLDDAALSRQKLAKSNETWPKNAELKNELRPRS 537

Query: 647  ----------IISTNGILKSCASGPQSPQQSMVQKFTQLTKDNIHKSLEKINSQGTEYAN 696
                       I  NG+  +  +   S   S+++     TK + H    K      +  +
Sbjct: 538  VSPLEAKSDSYILCNGVNNTKRNSLSSSMTSLIKT----TKKSGHFKDLKDRIAAAKLFS 593

Query: 697  HVLNRRGSLKMQTAAT-STKIVRNLNEFLNFSKKIALNREIREAEDHLVKKIESM--NSQ 753
             +     S+K +       K+V+NLNEFLNF+   ++N+   +  D LV+   S+    +
Sbjct: 594  SLERLDNSIKEENETKPRGKMVKNLNEFLNFA---SVNKN--KISDKLVRMGASVCEVDK 648

Query: 754  VKLLV-----------------------------ESSPEDDDSSEYFPMTCSITQELRLE 784
             K+L+                             E SP  DDS EYFP+T S+T+ELRLE
Sbjct: 649  PKILLTKSSFDDSESSSLEKTRHYSSTSNDDTFDEYSP--DDSQEYFPLTTSVTRELRLE 706

Query: 785  LENLNRNVLQD---------PEPQLADDI--ESGFESTNSSHAQYHLTGDEIFIWENPLD 833
            LENL+R V  D         P  + + ++  E   E T  +  Q     D+IF+WENPL 
Sbjct: 707  LENLDRKVFGDKYIDRLSESPSTEGSSEVKTERLEELTKPAVPQEKRKSDDIFVWENPLL 766

Query: 834  ETKDSALPESCSAHSIASNKSSFESDNDMTQ--SYSSTTSGADSIHSGDSSQQIREVAHS 891
                     S ++      ++  E D++M    + +S T     I    SS+  +EV   
Sbjct: 767  SKT------SPTSMQTPDEQADLEYDSEMPTLVNETSATKTVTPIKVITSSKPAKEVVRK 820

Query: 892  SFESDNDMTQSYSSTTSGADSIHSGDSSQQIREVAHVINSRQSRVGLPPPNEFGGGNPFL 951
              E      +      +GA   +S +      EV  VI        LP PNEFGGGNPFL
Sbjct: 821  EKEE----LRHVPLPVNGAPMTNSCE------EVTEVIRPSL----LPSPNEFGGGNPFL 866

Query: 952  MFLCISVLCQHSEHIMNHHMDYNEMAIYFDKMVRKHNVHKVLNEARKRYESYL 1004
            MFLCI+VL QH EHI++  MDYNEMA++FDKMVRKH+V +VLN+AR+ +  Y+
Sbjct: 867  MFLCITVLLQHREHIISKGMDYNEMAMHFDKMVRKHDVTRVLNQARQMHARYI 919

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345491869|ref|XP_003426725.1| PREDICTED: TBC1 domain family member 25-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345491867|ref|XP_003426724.1| PREDICTED: TBC1 domain family member 25-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307212715|gb|EFN88391.1| TBC1 domain family member 25 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|380023430|ref|XP_003695526.1| PREDICTED: LOW QUALITY PROTEIN: TBC1 domain family member 25-like [Apis florea] Back     alignment and taxonomy information
>gi|328792617|ref|XP_003251750.1| PREDICTED: TBC1 domain family member 25 isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|350412981|ref|XP_003489838.1| PREDICTED: TBC1 domain family member 25-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307183654|gb|EFN70357.1| TBC1 domain family member 25 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|383861900|ref|XP_003706422.1| PREDICTED: TBC1 domain family member 25-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328792619|ref|XP_395220.4| PREDICTED: TBC1 domain family member 25 isoform 2 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1018
FB|FBgn0034009 1098 CG8155 [Drosophila melanogaste 0.410 0.380 0.552 2.9e-148
ZFIN|ZDB-GENE-041111-25863 tbc1d25 "TBC1 domain family, m 0.296 0.349 0.503 1.8e-96
UNIPROTKB|Q3MII6688 TBC1D25 "TBC1 domain family me 0.274 0.405 0.518 3.8e-94
UNIPROTKB|J9PAY6763 TBC1D25 "Uncharacterized prote 0.274 0.365 0.515 2.6e-93
UNIPROTKB|F1PT07743 TBC1D25 "Uncharacterized prote 0.274 0.375 0.515 2.6e-93
RGD|1559711688 Tbc1d25 "TBC1 domain family, m 0.274 0.405 0.511 3.3e-93
UNIPROTKB|E1BHZ5737 TBC1D25 "Uncharacterized prote 0.268 0.370 0.521 4.3e-93
UNIPROTKB|I3LQ69651 TBC1D25 "Uncharacterized prote 0.274 0.428 0.515 1.7e-90
MGI|MGI:2444862742 Tbc1d25 "TBC1 domain family, m 0.274 0.376 0.511 1.7e-90
UNIPROTKB|B4DE92434 OATL1 "Ornithine aminotransfer 0.187 0.440 0.548 1.2e-70
FB|FBgn0034009 CG8155 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1161 (413.8 bits), Expect = 2.9e-148, Sum P(5) = 2.9e-148
 Identities = 249/451 (55%), Positives = 315/451 (69%)

Query:   151 KYDGMQQSECRKFSVDPQITSYEVLYSLLAKAFDVRKEFSICYRVLDDCNQETFLPLLSD 210
             K +   + E RKFSVDPQIT+ EVLYSLLAKAFDV+ +FSI Y+  D    E +L + SD
Sbjct:    16 KCEPTARPEWRKFSVDPQITTLEVLYSLLAKAFDVKSDFSIKYKAFDPAGNEIYLAVRSD 75

Query:   211 YELDAA--------IQNASDPCLCLRIDFVDTLSSGLDQDVAEC---VQPESSLSLMSFT 259
             ++LDAA        IQ AS+PCL L+ID V   +      V EC     P  S++     
Sbjct:    76 WDLDAAFLRIHNISIQTASEPCLTLQID-VKPFTV-----VRECETEASPGRSITGAPAP 129

Query:   260 QTKVP-LKLQGLIKNQVSIPCS--FIQ-MLLKTDT----QVEKTFNIFKGALSYMEDNMA 311
              T  P +  + L+    S+  S  ++Q M  K  +    Q+EKTF+I + A +  E++MA
Sbjct:   130 ATPAPFVPARELMSPLQSLGVSQKYVQHMQTKLGSSILNQMEKTFSIVQKAFNLSEEHMA 189

Query:   312 ALYLPPRSPLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEG- 370
              L  PPR P+ D+EFR FLD +GQI +  EL  VI+ GGI+PSLRRVVWKH+LNVYP G 
Sbjct:   190 NL--PPRPPMCDSEFRLFLDALGQIQRKDELHRVIFLGGIDPSLRRVVWKHLLNVYPGGA 247

Query:   371 ----MSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHV 426
                 + G +RME+ RRKSE+Y +LRDTWK  +KRG + G+LAYVT MV+KDVLRTDR H 
Sbjct:   248 NGLALDGHQRMEFMRRKSEQYCRLRDTWKAAVKRGSVAGELAYVTSMVKKDVLRTDRLHP 307

Query:   427 FYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMR 486
             FYAG+DDN N+ +LFNILTTYALNHP+VSYCQGMSD+ASPLLVTM++EA AYICFCA+M 
Sbjct:   308 FYAGSDDNQNIAALFNILTTYALNHPSVSYCQGMSDIASPLLVTMNDEAQAYICFCAIMS 367

Query:   487 RLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAF 546
             R+  NF++DGI MTQ+F HL + L +Y P+F+EYLKS QADDLL+CYRWLLLE+KREF F
Sbjct:   368 RMRGNFMLDGIAMTQKFAHLTEALSFYDPEFWEYLKSQQADDLLFCYRWLLLELKREFPF 427

Query:   547 NDALIMLEVMWSSLPPN-PPQGELPLYDVKF 576
              DAL MLEV WSSL      + EL L++ +F
Sbjct:   428 EDALRMLEVQWSSLRYRCDGEKELALFEKEF 458
GO:0005622 "intracellular" evidence=IEA
GO:0005097 "Rab GTPase activator activity" evidence=IEA
GO:0032313 "regulation of Rab GTPase activity" evidence=IEA
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0007298 "border follicle cell migration" evidence=IMP
ZFIN|ZDB-GENE-041111-25 tbc1d25 "TBC1 domain family, member 25" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3MII6 TBC1D25 "TBC1 domain family member 25" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9PAY6 TBC1D25 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PT07 TBC1D25 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1559711 Tbc1d25 "TBC1 domain family, member 25" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BHZ5 TBC1D25 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQ69 TBC1D25 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2444862 Tbc1d25 "TBC1 domain family, member 25" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|B4DE92 OATL1 "Ornithine aminotransferase-like 1, isoform CRA_b" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 2e-45
pfam00566206 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain 4e-37
COG5210496 COG5210, COG5210, GTPase-activating protein [Gener 8e-24
smart00164216 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16 0.001
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information 
 Score =  162 bits (412), Expect = 2e-45
 Identities = 69/221 (31%), Positives = 98/221 (44%), Gaps = 20/221 (9%)

Query: 347 YYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGD 406
              G+ PSLR VVWK +LN  P   S                  +D +  LLK  +   D
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMDTS----------------ADKDLYSRLLK--ETAPD 42

Query: 407 LAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASP 466
              +   + KD+ RT   H F+   +      SL  +L  YAL +P V YCQGM+ LA+P
Sbjct: 43  DKSIVHQIEKDLRRTFPEHSFFQDKE-GPGQESLRRVLKAYALYNPEVGYCQGMNFLAAP 101

Query: 467 LLVTMSNEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGL-EYYHPKFYEYLKSHQ 525
           LL+ M +E  A+ C   LM R G NF +  ++  Q      D L + Y P  Y++LK   
Sbjct: 102 LLLVMEDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLG 161

Query: 526 ADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQ 566
               LY  RW L    RE      L + +V+++       +
Sbjct: 162 ITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFR 202

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216
>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain Back     alignment and domain information
>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1018
KOG2058|consensus436 100.0
smart00164199 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R 100.0
KOG4567|consensus370 100.0
KOG2223|consensus586 100.0
COG5210496 GTPase-activating protein [General function predic 100.0
KOG2224|consensus781 100.0
KOG2197|consensus488 99.97
KOG1092|consensus484 99.96
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 99.96
KOG2222|consensus848 99.93
KOG4347|consensus671 99.92
KOG4436|consensus948 99.88
KOG1102|consensus397 99.85
KOG1093|consensus725 99.83
KOG2221|consensus267 99.83
KOG1091|consensus625 99.81
KOG2595|consensus395 99.6
KOG4436|consensus 948 99.42
KOG2197|consensus488 98.83
KOG3636|consensus669 98.81
KOG2224|consensus781 98.76
KOG1648|consensus813 98.7
cd0640380 PB1_Par6 The PB1 domain is an essential part of Pa 97.56
smart0066681 PB1 PB1 domain. Phox and Bem1p domain, present in 97.21
cd0640287 PB1_p62 The PB1 domain is an essential part of p62 96.93
KOG2801|consensus559 96.37
cd0599281 PB1 The PB1 domain is a modular domain mediating s 95.85
PF0056484 PB1: PB1 domain; InterPro: IPR000270 The Phox and 95.7
cd0640886 PB1_NoxR The PB1 domain is present in the Epichloe 95.01
cd0639891 PB1_Joka2 The PB1 domain is present in the Nicotia 94.72
cd0640782 PB1_NLP A PB1 domain is present in NIN like protei 94.53
KOG1648|consensus813 93.91
cd0639681 PB1_NBR1 The PB1 domain is an essential part of NB 93.45
COG5210496 GTPase-activating protein [General function predic 91.54
KOG4567|consensus370 89.97
cd0640181 PB1_TFG The PB1 domain found in TFG protein, an on 88.64
PF00566214 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00 84.47
cd0640483 PB1_aPKC PB1 domain is an essential modular domain 82.39
>KOG2058|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.8e-38  Score=358.60  Aligned_cols=226  Identities=23%  Similarity=0.248  Sum_probs=195.0

Q ss_pred             cCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCCCCchHHHHhHhhh
Q psy16313        337 IQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRK  416 (1018)
Q Consensus       337 id~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~~~Dl~~i~~qIeK  416 (1018)
                      ...++|+++| ++|||+++|+.||..+.|...           ....++.|+.+....         ...-..+.++|+.
T Consensus       144 ~~s~elk~li-RkGiP~~~R~~VW~~~~g~~~-----------~~~~~~~yq~ll~~~---------~~~~~~~~~qI~~  202 (436)
T KOG2058|consen  144 PRSDELKRLI-RKGIPPELRGEVWWVLSGARR-----------QLNYPGYYQELLRKG---------DEKKSPVVKQIKL  202 (436)
T ss_pred             CCcHHHHHHH-HcCCChhhhhHHHHHHhcchh-----------hccCchhHHHHHhcC---------CCccchHHHHHHh
Confidence            3468999999 599999999999999998431           111166777776531         1111135689999


Q ss_pred             hcccccccc-cccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcCchHHHHHHHHHHHHHhhhccc-C
Q psy16313        417 DVLRTDRHH-VFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMSNEAHAYICFCALMRRLGRNFL-V  494 (1018)
Q Consensus       417 DV~RTfp~~-~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~dEaDAFWcF~~LMer~~~nF~-~  494 (1018)
                      |+.||||++ ++|... +..++..|+|||.|||.+||+||||||||+|||++|++|+.|++|||||+.+++++.+.|+ .
T Consensus       203 DL~RTfP~n~~~~~~~-~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~Yyt~  281 (436)
T KOG2058|consen  203 DLPRTFPDNFKGFDSE-DSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPRYYTP  281 (436)
T ss_pred             ccccccCCCcccCCCC-CchHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchhhcCc
Confidence            999999999 788876 4566899999999999999999999999999999999999788999999999999997777 4


Q ss_pred             CChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHHHHHHcCCCCChHHHHHHHHHHhhcCCCCCCCCccccccc
Q psy16313        495 DGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFNDALIMLEVMWSSLPPNPPQGELPLYDV  574 (1018)
Q Consensus       495 d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RWFLTLFsrefPfedVLRIWDvfwasl~~~~~~feL~L~~l  574 (1018)
                      +..|......+|+.||+..+|+|+.||...+++..++++.||+++|+..+|.+++|||||++|..+....+++.++++..
T Consensus       282 nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~  361 (436)
T KOG2058|consen  282 NLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKK  361 (436)
T ss_pred             hhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            66788888889999999999999999999999999999999999999999999999999999999999889999999998


Q ss_pred             cCCCCCCCCC
Q psy16313        575 KFEPPCDPAP  584 (1018)
Q Consensus       575 ~fd~il~a~~  584 (1018)
                      .-+.++....
T Consensus       362 ~ee~il~~~~  371 (436)
T KOG2058|consen  362 HEEEILKEDS  371 (436)
T ss_pred             hHHHHhcCCC
Confidence            8777755443

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p Back     alignment and domain information
>KOG4567|consensus Back     alignment and domain information
>KOG2223|consensus Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG1092|consensus Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>KOG2222|consensus Back     alignment and domain information
>KOG4347|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG1102|consensus Back     alignment and domain information
>KOG1093|consensus Back     alignment and domain information
>KOG2221|consensus Back     alignment and domain information
>KOG1091|consensus Back     alignment and domain information
>KOG2595|consensus Back     alignment and domain information
>KOG4436|consensus Back     alignment and domain information
>KOG2197|consensus Back     alignment and domain information
>KOG3636|consensus Back     alignment and domain information
>KOG2224|consensus Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information
>smart00666 PB1 PB1 domain Back     alignment and domain information
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover Back     alignment and domain information
>KOG2801|consensus Back     alignment and domain information
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity Back     alignment and domain information
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins Back     alignment and domain information
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA Back     alignment and domain information
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein Back     alignment and domain information
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium) Back     alignment and domain information
>KOG1648|consensus Back     alignment and domain information
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62 Back     alignment and domain information
>COG5210 GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4567|consensus Back     alignment and domain information
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK Back     alignment and domain information
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [] Back     alignment and domain information
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
2g77_A410 Crystal Structure Of Gyp1 Tbc Domain In Complex Wit 7e-10
1fkm_A396 Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p 2e-09
3qye_A331 Crystal Structure Of Human Tbc1d1 Rabgap Domain Len 1e-08
3qyb_A301 X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab 4e-07
2qfz_A345 Crystal Structure Of Human Tbc1 Domain Family Membe 3e-04
2qq8_A334 Crystal Structure Of The Putative Rabgap Domain Of 4e-04
>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410 Back     alignment and structure 
Iteration: 1

 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 102/247 (41%), Gaps = 39/247 (15%)
Query: 336 IIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWK 395
           II  ++LR  I + GI    R VVWK ++   P  ++ K +  + +RK +EY   RD+ K
Sbjct: 40  IINQQDLRQ-ISWNGIPKIHRPVVWKLLIGYLP--VNTKRQEGFLQRKRKEY---RDSLK 93
Query: 396 DLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVS 455
                 Q   D+      +  D+ RT+ H   Y          SL  IL  +A+ HPA  
Sbjct: 94  HTFS-DQHSRDIP-TWHQIEIDIPRTNPHIPLYQFKSVQN---SLQRILYLWAIRHPASG 148
Query: 456 YCQGMSDLASPLLVTMSN----------------------------EAHAYICFCALMRR 487
           Y QG++DL +P   T                               EA  + C   L+ +
Sbjct: 149 YVQGINDLVTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQ 208
Query: 488 LGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEMKREFAFN 547
           +  N++     + ++ ++L+  ++      Y + ++   + + + +RW+   + REF   
Sbjct: 209 ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMG 268
Query: 548 DALIMLE 554
             + M +
Sbjct: 269 TVIRMWD 275
>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396 Back     alignment and structure
>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331 Back     alignment and structure
>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301 Back     alignment and structure
>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345 Back     alignment and structure
>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1018
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 6e-56
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 2e-06
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 2e-51
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 2e-06
2qq8_A334 TBC1 domain family member 14; structural genomics 6e-27
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 3e-25
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 1e-24
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 3e-23
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
 Score =  196 bits (500), Expect = 6e-56
 Identities = 49/264 (18%), Positives = 89/264 (33%), Gaps = 37/264 (14%)

Query: 325 EFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKS 384
           +F+Q L   G      ELR + +  GI   +R + WK +    P  +    R    +RK 
Sbjct: 28  KFKQLLA--GPNTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPANVD--RRPATLQRKQ 82

Query: 385 EEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNIL 444
           +EY+   + + D                 +  D+ R     +                IL
Sbjct: 83  KEYFAFIEHYYDSRNDEVH----QDTYRQIHIDIPRMSPEALIL----QPKVTEIFERIL 134

Query: 445 TTYALNHPAVSYCQGMSDLASPLLVTMSN------------------------EAHAYIC 480
             +A+ HPA  Y QG++DL +P  V                            EA  Y C
Sbjct: 135 FIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWC 194

Query: 481 FCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRWLLLEM 540
              L+  +  N+      +  + + L + +     + + +L  H+   L + +RW+   +
Sbjct: 195 MSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLL 254

Query: 541 KREFAFNDALIMLEVMWSSLPPNP 564
            RE      + + +   S      
Sbjct: 255 MREVPLRCTIRLWDTYQSEPDGFS 278
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396 Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334 Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310 Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331 Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1018
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 100.0
2qq8_A334 TBC1 domain family member 14; structural genomics 100.0
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 100.0
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 100.0
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 100.0
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 100.0
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 99.97
1wmh_B86 Partitioning defective-6 homolog alpha; kinase, PB 97.8
2kkc_A102 Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro 96.77
4hl4_A292 TBC1 domain family member 20; rabgap, RAB1B, hydro 96.76
1fkm_A396 Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein 96.75
3qwl_A294 TBC1 domain family member 7; RAB GTPase activation 96.4
1vd2_A89 Protein kinase C, IOTA type; PB1 domain, OPCA moti 96.35
2ktr_A117 Sequestosome-1; autophagy, NF-KB signaling, HOMO-o 96.31
2qfz_A345 TBC1 domain family member 22A; RAB-GAP, GTPase act 96.23
3qye_A331 TBC1 domain family member 1; rabgap, RAB, myocytes 95.65
2qq8_A334 TBC1 domain family member 14; structural genomics 95.09
3hzj_A310 Rabgap1L, RAB GTPase-activating protein 1-like; st 93.83
1wj6_A101 KIAA0049 protein, RSGI RUH-024; PB1 domain, protei 87.41
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 86.33
2bkf_A87 Zinc-finger protein NBR1 (NEXT to breast cancer 1; 82.43
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
Probab=100.00  E-value=3.9e-42  Score=377.46  Aligned_cols=230  Identities=21%  Similarity=0.342  Sum_probs=200.3

Q ss_pred             CCCHHHHHhhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhh
Q psy16313        320 PLNDTEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLK  399 (1018)
Q Consensus       320 PLteeeW~k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~  399 (1018)
                      .-..++|.++++.+  .++.++||++++ +|||+.+|+.||++|||++|.+  ..+|...+.++++.|..++++|.....
T Consensus        23 ~~r~~kw~~~l~~~--~~d~~~Lr~l~~-~GiP~~~R~~vW~~llg~~p~~--~~~~~~~l~~~~~~Y~~l~~~~~~~~~   97 (345)
T 2qfz_A           23 ASRLDKFKQLLAGP--NTDLEELRRLSW-SGIPKPVRPMTWKLLSGYLPAN--VDRRPATLQRKQKEYFAFIEHYYDSRN   97 (345)
T ss_dssp             -CHHHHHHHHHHCS--BCCHHHHHHHHT-TCCCGGGHHHHHHHHTTSSCSB--GGGHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHcCC--CCCHHHHHHHHH-CCCCHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            34468999999854  478999999995 9999999999999999999875  456778888999999999998754321


Q ss_pred             ccCCCCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcC-------
Q psy16313        400 RGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMS-------  472 (1018)
Q Consensus       400 ~~~~~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~-------  472 (1018)
                      .    .......++|++||.||+|+ ++|+.   ..+++.|+|||.+||.+||++|||||||+||||||+++.       
T Consensus        98 ~----~~~~~~~~~I~~Dv~RT~p~-~~F~~---~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~  169 (345)
T 2qfz_A           98 D----EVHQDTYRQIHIDIPRMSPE-ALILQ---PKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAE  169 (345)
T ss_dssp             -------CHHHHHHHHHHGGGCSCH-HHHTS---HHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC--
T ss_pred             c----cchHHHHHHHHHhCcccCCc-cccCC---chHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccc
Confidence            1    11233568999999999999 99985   367889999999999999999999999999999998763       


Q ss_pred             -----------------chHHHHHHHHHHHHHhhhcccCCChHHHHHHHHHHHHHHhhCHHHHHHHHHcCCCcccchHHH
Q psy16313        473 -----------------NEAHAYICFCALMRRLGRNFLVDGITMTQRFQHLADGLEYYHPKFYEYLKSHQADDLLYCYRW  535 (1018)
Q Consensus       473 -----------------dEaDAFWcF~~LMer~~~nF~~d~~gm~~~L~vLe~LLk~~DPeLy~HLkk~gI~p~lF~~RW  535 (1018)
                                       .|++|||||++||+++.++|..+..++...+.+++.+|+.++|+||+||++.|+.+.+|+++|
T Consensus       170 ~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W  249 (345)
T 2qfz_A          170 EVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRW  249 (345)
T ss_dssp             ---CCCCTTSCHHHHHHHHHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhHHHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHH
Confidence                             288999999999999988888888999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCChHHHHHHHHHHhhcCCC
Q psy16313        536 LLLEMKREFAFNDALIMLEVMWSSLPP  562 (1018)
Q Consensus       536 FLTLFsrefPfedVLRIWDvfwasl~~  562 (1018)
                      |+++|+++||+++++||||++|+.+..
T Consensus       250 ~~~lF~~~~p~~~~lrlWD~~l~~g~~  276 (345)
T 2qfz_A          250 MNNLLMREVPLRCTIRLWDTYQSEPDG  276 (345)
T ss_dssp             HHTTTTTTSCHHHHHHHHHHHTTSTTT
T ss_pred             HHHHHcccCCHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999998754
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Back     alignment and structure
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A* Back     alignment and structure
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Back     alignment and structure
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Back     alignment and structure
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Back     alignment and structure
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Back     alignment and structure
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Back     alignment and structure
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Back     alignment and structure
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Back     alignment and structure
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1018
d1fkma1194 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p { 2e-23
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 2e-08
d1fkma2188 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p { 0.002
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 Back     information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.5 bits (239), Expect = 2e-23
 Identities = 44/197 (22%), Positives = 71/197 (36%), Gaps = 40/197 (20%)

Query: 325 EFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKS 384
           +F   L     II  ++LR + +  GI    R VVWK ++   P  ++ K +  + +RK 
Sbjct: 9   KFDNILKD-KTIINQQDLRQISW-NGIPKIHRPVVWKLLIGYLP--VNTKRQEGFLQRKR 64

Query: 385 EEYYKLRDTWKDLLKRGQMVGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNIL 444
           +EY                          +  D+ RT+ H   Y          SL  IL
Sbjct: 65  KEYRDSLKHTFSDQHSRD-----IPTWHQIEIDIPRTNPHIPLY---QFKSVQNSLQRIL 116

Query: 445 TTYALNHPAVSYCQGMSDLASPLLVTMSN----------------------------EAH 476
             +A+ HPA  Y QG++DL +P   T                               EA 
Sbjct: 117 YLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEAD 176

Query: 477 AYICFCALMRRLGRNFL 493
            + C   L+ ++  N++
Sbjct: 177 TFWCLTKLLEQITDNYI 193
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1018
d1fkma1194 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.97
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 99.21
d1fkma2188 Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha 97.09
d1ip9a_85 Bud emergence mediator Bemp1 {Baker's yeast (Sacch 96.3
d1wmhb_82 Partitioning defective-6 homolog alpha, PAR-6 alph 95.87
d2bkfa185 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum 95.3
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.1e-31  Score=264.49  Aligned_cols=158  Identities=27%  Similarity=0.455  Sum_probs=133.6

Q ss_pred             HHHHhhhccCCCccCHHHHHHHHHhCCCCchhHHHHHHHhhCcCCCCCChHHHHHHHHHhHHHHHHHHHHHHHhhhccCC
Q psy16313        324 TEFRQFLDPVGQIIQSRELRTVIYYGGIEPSLRRVVWKHILNVYPEGMSGKERMEYTRRKSEEYYKLRDTWKDLLKRGQM  403 (1018)
Q Consensus       324 eeW~k~Ld~~Griid~ekLR~lI~rgGIP~sLR~~VWklLLGv~P~dsT~eER~e~lkqk~~eY~~Lkeqwks~~~~~~~  403 (1018)
                      ++|..++.+ ..+++.++||++++ +|||+++|+.||++|||++|.+.+  +|...+.++++.|..+...+..     ..
T Consensus         8 ~~~~~~l~~-~~~i~~~~lr~l~~-~Gip~~lR~~vW~~llg~~~~~~~--~~~~~~~~~~~~y~~~~~~~~~-----~~   78 (194)
T d1fkma1           8 SKFDNILKD-KTIINQQDLRQISW-NGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFS-----DQ   78 (194)
T ss_dssp             HHHHHHHSS-CSBCCHHHHHHHHT-TCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSS-----SS
T ss_pred             HHHHHHhcc-cCCCCHHHHHHHHH-cCCChHHHHHHHHHHHhhcCCchh--hHHHHHHHHhhhhhhhhhhhhh-----cc
Confidence            679998864 56789999999985 999999999999999999988765  5556788888889887765332     12


Q ss_pred             CCchHHHHhHhhhhcccccccccccccCCcchhHHHHHHHHHHHHhcCCCCccccCchhhHHHHHhhcC-----------
Q psy16313        404 VGDLAYVTGMVRKDVLRTDRHHVFYAGADDNCNVISLFNILTTYALNHPAVSYCQGMSDLASPLLVTMS-----------  472 (1018)
Q Consensus       404 ~~Dl~~i~~qIeKDV~RTfp~~~fF~g~ddn~~q~sLrRIL~AYA~yNPdVGYcQGMNdIAApLLlVm~-----------  472 (1018)
                      ........++|++||.||+|++++|..   .++++.|+|||.+||.+||++|||||||+||||||+++.           
T Consensus        79 ~~~~~~~~~~I~~Dv~RT~~~~~~f~~---~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~  155 (194)
T d1fkma1          79 HSRDIPTWHQIEIDIPRTNPHIPLYQF---KSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDD  155 (194)
T ss_dssp             CSTHHHHHHHHHHHGGGSSTTSGGGGS---HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGG
T ss_pred             cccchHHHHHHHHHHHhcCCccccccc---chhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhh
Confidence            223345678999999999999999985   478999999999999999999999999999999998862           


Q ss_pred             -----------------chHHHHHHHHHHHHHhhhccc
Q psy16313        473 -----------------NEAHAYICFCALMRRLGRNFL  493 (1018)
Q Consensus       473 -----------------dEaDAFWcF~~LMer~~~nF~  493 (1018)
                                       .|+||||||++||+++.++|.
T Consensus       156 ~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         156 VEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             TTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                             289999999999999887774
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure