Psyllid ID: psy16318

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470----
MLQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIMECEEE
cHHHHHHcccccccccccEEEccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccEEEEccEEEccEEEEEEEEEccHHHHccccEEEEEEcccccEEEccccccccccccccccccEEEEEcccccccccccccccEEEEEEccccEEEEEEEEEcccccccccHHHccccccHHHHHHHHHHEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHcccHHHHHcccHHccHHHHHHHHHHcHHHHcccccccccccccccccEEEEEEEEEEEEEEEEccEEEEEcccccEEEEEEcccccccccccccccEEEEEEcccccccEEHHHHcccccccccccccEEEEEEEcEEEEccEEEEEEEEEEEEEcccEEEEEEcHHccHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccc
cHHHHHHccccccccHcEEEEEEcccccccHHHHHHHHHccccEcHHHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHEEccHHHHHccccEEEEEcccccccccccccccccccHHHHHHHHEEEHccHHHHHHHHcHcHEccccccccccEEcccHHHEccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHHHccccccccEEEEEEccHHHHHEEEcccccccHHHHHHHHHccccEcHHHHHHHHHHHHHHHHHHHcccccccccHHHEEEcccccEEEEccccEEEEEEEEEcccEHHHcccccEEEEEEccccEEEcccccccccEEEEccccEEEEEEEEcccccEEEEEcccccEEEEEEEcccccccEEEEEEEEEEEEEcccEEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccc
MLQTIAKlgeskvlpgdvawrlydtygfpvdLTQLMVEEKGLSVDMEVYEDAKKkaqsepesqagmetsvefcGGTHLAMAHHVGDFCISSEEAIAKGSNIvsycgskgtfqshsgsindemvnkYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAigalpfgltvpltfgpslGLVFLAVAEFLFLVSScgfigsdtglgdlsqtkhtpfvkrlrfsynkqfvdsvssgteagilldksnfyaeqggqiydegfmigvndegtvvglrynkqfvdsvssgteagilldksnfyaeqggqiydegfmsnkqfvdsvssgteagilldksnfyaeqggqiydegfmigvndeSQIELWFSSLVnlegskyalpIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHidtarrrpimsnHTATHILNHALrfvlgpeadqkgslVYRYHLHENIMECEEE
mlqtiaklgeskvlpgDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKaqsepesqagMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGtfqshsgsinDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHtlshtlrvgdklkLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIMECEEE
MLQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGALPFGLTVPLTFGPSlglvflavaeflflvSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSlsnlkkkkklvkllhtlshtlRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIMECEEE
**********SKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVD************************VEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFS************LLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIM*****
MLQT************DVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDA******************EFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMI**************************AGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIMEC***
MLQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYE******************SVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIMECEEE
MLQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIM*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLQTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGMETSVEFCGGTHLAMAHHVGDFCISSEEAIAKGSNIVSYCGSKGTFQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGWTGVAIGALPFGLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIMECEEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query474 2.2.26 [Sep-21-2011]
Q8BGQ7 968 Alanine--tRNA ligase, cyt yes N/A 0.402 0.197 0.385 1e-28
P50475 968 Alanine--tRNA ligase, cyt yes N/A 0.312 0.152 0.422 3e-28
Q8CFX8 968 Alanine--tRNA ligase, cyt N/A N/A 0.312 0.152 0.422 6e-28
Q5RC02 968 Alanine--tRNA ligase, cyt yes N/A 0.293 0.143 0.459 7e-28
P21894 967 Alanine--tRNA ligase, cyt N/A N/A 0.253 0.124 0.436 7e-28
P49588 968 Alanine--tRNA ligase, cyt yes N/A 0.293 0.143 0.459 7e-28
Q9VLM8 966 Alanine--tRNA ligase, cyt yes N/A 0.240 0.118 0.470 1e-23
O01541 968 Alanine--tRNA ligase, cyt yes N/A 0.238 0.116 0.419 2e-21
Q54Y20 946 Alanine--tRNA ligase, cyt yes N/A 0.409 0.205 0.312 1e-19
Q7VLK0 874 Alanine--tRNA ligase OS=H yes N/A 0.246 0.133 0.363 5e-16
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 Back     alignment and function desciption
 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/223 (38%), Positives = 123/223 (55%), Gaps = 32/223 (14%)

Query: 245 EAGILLDKSNFYAEQG-GQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDK 303
           E G+++D + F  E+   Q+  +G   G  DE  ++   Y  + + +   G EA     K
Sbjct: 431 EKGLVVDMNGFEEERRLAQLKSQG--KGAGDEDLIMLDIYAIEELRA--KGLEATDDSPK 486

Query: 304 SNFYAEQGGQIYDE-------GFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEG 356
            N+ ++  G    E            K FVD V +G E G++LDK+ FYAEQGGQIYDEG
Sbjct: 487 YNYQSDSSGSYVFECTVATVLALRREKMFVDEVVTGQECGVVLDKTCFYAEQGGQIYDEG 546

Query: 357 FMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGD 416
           +++ V+D S+ +                    +F++ N + +   V  + T+   L+VGD
Sbjct: 547 YLVKVDDSSEDKT-------------------EFTVKNAQVRGGYVLHIGTIYGNLKVGD 587

Query: 417 KLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLV 459
           +++L ID  RRRP+MSNHTATHILN ALR VLG EADQKGSLV
Sbjct: 588 QVRLFIDEPRRRPVMSNHTATHILNFALRSVLG-EADQKGSLV 629
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 Back     alignment and function description
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 Back     alignment and function description
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 Back     alignment and function description
>sp|P21894|SYAC_BOMMO Alanine--tRNA ligase, cytoplasmic OS=Bombyx mori PE=1 SV=1 Back     alignment and function description
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 Back     alignment and function description
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster GN=Aats-ala PE=2 SV=1 Back     alignment and function description
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=aars-2 PE=2 SV=1 Back     alignment and function description
>sp|Q54Y20|SYAC_DICDI Alanine--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum GN=alaS PE=2 SV=1 Back     alignment and function description
>sp|Q7VLK0|SYA_HAEDU Alanine--tRNA ligase OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=alaS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
91084029 965 PREDICTED: similar to alanyl-tRNA synthe 0.244 0.120 0.507 2e-29
357612410530 alanyl-tRNA synthetase, cytoplasmic [Dan 0.265 0.237 0.466 3e-29
73957022 968 PREDICTED: alanyl-tRNA synthetase, cytop 0.390 0.191 0.372 3e-28
260784931 751 hypothetical protein BRAFLDRAFT_237056 [ 0.253 0.159 0.507 1e-27
113195586 991 alanyl-tRNA synthetase, cytoplasmic isof 0.286 0.137 0.459 1e-27
118763839 966 Aars protein [Danio rerio] 0.286 0.140 0.459 1e-27
351701755 983 Alanyl-tRNA synthetase, cytoplasmic [Het 0.312 0.150 0.44 1e-27
47937910 757 Aars protein, partial [Danio rerio] 0.286 0.179 0.459 2e-27
410983936 968 PREDICTED: LOW QUALITY PROTEIN: alanine- 0.291 0.142 0.462 2e-27
291390471 945 PREDICTED: alanyl-tRNA synthetase [Oryct 0.312 0.156 0.44 2e-27
>gi|91084029|ref|XP_966465.1| PREDICTED: similar to alanyl-tRNA synthetase [Tribolium castaneum] gi|270006700|gb|EFA03148.1| hypothetical protein TcasGA2_TC013061 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 70/138 (50%), Positives = 93/138 (67%), Gaps = 22/138 (15%)

Query: 322 NKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSK 381
           NKQFV+ V +G E GILLDK+NFYAEQGGQIYD G+++ + DES                
Sbjct: 514 NKQFVEQVHTGQECGILLDKTNFYAEQGGQIYDTGYIVKIGDES---------------- 557

Query: 382 YALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLKLHIDTARRRPIMSNHTATHILN 441
                 ++FS+ N++ +   V  + +L  TL+ GDK+ LH+D+ARRR IM+NHT TH+LN
Sbjct: 558 ------VEFSVKNVQVRGGYVIHIGSLEGTLKKGDKVALHVDSARRRLIMNNHTGTHVLN 611

Query: 442 HALRFVLGPEADQKGSLV 459
           +ALR VLG EADQ+GSLV
Sbjct: 612 YALRKVLGTEADQRGSLV 629

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357612410|gb|EHJ67979.1| alanyl-tRNA synthetase, cytoplasmic [Danaus plexippus] Back     alignment and taxonomy information
>gi|73957022|ref|XP_536788.2| PREDICTED: alanyl-tRNA synthetase, cytoplasmic isoform 1 [Canis lupus familiaris] Back     alignment and taxonomy information
>gi|260784931|ref|XP_002587517.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae] gi|229272665|gb|EEN43528.1| hypothetical protein BRAFLDRAFT_237056 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|113195586|ref|NP_001037775.1| alanyl-tRNA synthetase, cytoplasmic isoform 1 [Danio rerio] Back     alignment and taxonomy information
>gi|118763839|gb|AAI28795.1| Aars protein [Danio rerio] Back     alignment and taxonomy information
>gi|351701755|gb|EHB04674.1| Alanyl-tRNA synthetase, cytoplasmic [Heterocephalus glaber] Back     alignment and taxonomy information
>gi|47937910|gb|AAH71378.1| Aars protein, partial [Danio rerio] Back     alignment and taxonomy information
>gi|410983936|ref|XP_003998291.1| PREDICTED: LOW QUALITY PROTEIN: alanine--tRNA ligase, cytoplasmic [Felis catus] Back     alignment and taxonomy information
>gi|291390471|ref|XP_002711725.1| PREDICTED: alanyl-tRNA synthetase [Oryctolagus cuniculus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query474
UNIPROTKB|F1P5J5916 AARS "Uncharacterized protein" 0.132 0.068 0.593 1.7e-36
ZFIN|ZDB-GENE-030131-3663 991 aars "alanyl-tRNA synthetase" 0.097 0.046 0.787 1.9e-36
UNIPROTKB|P49588 968 AARS "Alanine--tRNA ligase, cy 0.132 0.065 0.593 1.6e-35
FB|FBgn0027094 966 Aats-ala "Alanyl-tRNA syntheta 0.107 0.052 0.725 4.1e-35
UNIPROTKB|J9P755952 AARS "Uncharacterized protein" 0.132 0.066 0.546 5.4e-35
UNIPROTKB|F1P7C2 968 AARS "Uncharacterized protein" 0.132 0.065 0.546 5.8e-35
UNIPROTKB|F1S431954 AARS "Uncharacterized protein" 0.132 0.066 0.593 6.3e-35
MGI|MGI:2384560 968 Aars "alanyl-tRNA synthetase" 0.132 0.065 0.562 1.4e-34
RGD|1304832 968 Aars "alanyl-tRNA synthetase" 0.132 0.065 0.562 2.8e-34
UNIPROTKB|A6QLT9 968 AARS "AARS protein" [Bos tauru 0.132 0.065 0.578 3e-34
UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 195 (73.7 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
 Identities = 38/64 (59%), Positives = 48/64 (75%)

Query:     5 IAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQ- 63
             I  +G+SK +PGD AW LYDTYGFPVDLT L+ EEKGL VDME +E+ +K AQ + + + 
Sbjct:   397 IQSMGDSKTIPGDTAWLLYDTYGFPVDLTGLIAEEKGLVVDMEGFEEERKNAQLKSQGKG 456

Query:    64 AGME 67
             AG E
Sbjct:   457 AGGE 460
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004813 "alanine-tRNA ligase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0001942 "hair follicle development" evidence=IEA
GO:0002161 "aminoacyl-tRNA editing activity" evidence=IEA
GO:0006400 "tRNA modification" evidence=IEA
GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA
GO:0006457 "protein folding" evidence=IEA
GO:0021680 "cerebellar Purkinje cell layer development" evidence=IEA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA
GO:0043200 "response to amino acid stimulus" evidence=IEA
GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA
GO:0043588 "skin development" evidence=IEA
GO:0050885 "neuromuscular process controlling balance" evidence=IEA
ZFIN|ZDB-GENE-030131-3663 aars "alanyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P49588 AARS "Alanine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0027094 Aats-ala "Alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|J9P755 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7C2 AARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S431 AARS "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1304832 Aars "alanyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A6QLT9 AARS "AARS protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 2e-31
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 5e-27
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 2e-24
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 6e-24
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 3e-20
PRK00252865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 2e-18
COG0013879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 2e-16
PLN02900936 PLN02900, PLN02900, alanyl-tRNA synthetase 1e-14
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 1e-13
TIGR03683 902 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase 1e-13
TIGR00344851 TIGR00344, alaS, alanine--tRNA ligase 5e-13
PRK13902 900 PRK13902, alaS, alanyl-tRNA synthetase; Provisiona 5e-13
COG2872 241 COG2872, COG2872, Predicted metal-dependent hydrol 5e-13
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 2e-12
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 2e-12
pfam01411551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 6e-11
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 9e-11
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 5e-10
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 2e-09
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 3e-09
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 4e-09
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 2e-07
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 2e-06
PLN02900936 PLN02900, PLN02900, alanyl-tRNA synthetase 2e-05
smart0086343 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn 4e-04
pfam0797344 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt 6e-04
PRK01584594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 0.001
COG0013879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 0.003
COG2872241 COG2872, COG2872, Predicted metal-dependent hydrol 0.003
TIGR00344851 TIGR00344, alaS, alanine--tRNA ligase 0.004
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information 
 Score =  128 bits (323), Expect = 2e-31
 Identities = 57/146 (39%), Positives = 75/146 (51%), Gaps = 29/146 (19%)

Query: 317 EGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVN 376
           +  ++   FV+SVS G E GI+LDK++FYAE GGQI D G + G                
Sbjct: 504 KAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGGAV----------- 552

Query: 377 LEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHT---LRVGDKLKLHIDTARRRPIMSN 433
                          +S+++K    V  LH  + T   + VGD +   +D  RRR I  N
Sbjct: 553 -------------VEVSDVQKAGGFV--LHIGTVTEGSVSVGDAVTCKVDYDRRRRIAPN 597

Query: 434 HTATHILNHALRFVLGPEADQKGSLV 459
           HTATH+LN AL+ VLG   DQKGSLV
Sbjct: 598 HTATHLLNSALKEVLGDHVDQKGSLV 623

Length = 936
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 474
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
PLN02900 936 alanyl-tRNA synthetase 100.0
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 100.0
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
KOG0188|consensus 895 100.0
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 100.0
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 100.0
PLN02900 936 alanyl-tRNA synthetase 99.97
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 99.97
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 99.96
KOG0188|consensus 895 99.96
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 99.94
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 99.94
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 99.94
PF01411552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 99.92
COG2872 241 Predicted metal-dependent hydrolases related to al 99.89
PLN02961223 alanine-tRNA ligase 99.88
PRK01584594 alanyl-tRNA synthetase; Provisional 99.87
PRK01584594 alanyl-tRNA synthetase; Provisional 99.84
KOG2105|consensus 415 98.82
PLN02961223 alanine-tRNA ligase 98.6
COG2872241 Predicted metal-dependent hydrolases related to al 98.2
PLN02837 614 threonine-tRNA ligase 95.58
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 93.08
PF0797344 tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco 85.02
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-47  Score=418.99  Aligned_cols=272  Identities=28%  Similarity=0.387  Sum_probs=220.4

Q ss_pred             cCCceee-ecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc--------cccccCCccc
Q psy16318        105 CGSKGTF-QSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW--------TGVAIGALPF  175 (474)
Q Consensus       105 ~~~klrF-fs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~--------~~~lsge~~F  175 (474)
                      +|.+.-| +.+++.+.+.+...||+|.      .++..|..+|..||+.|.+||++|+++++        ...|+|+++|
T Consensus       319 LG~~~~fl~~LV~~~~~~m~~~ypel~------~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~~~~~~~l~ge~af  392 (879)
T COG0013         319 LGIKEPFLYKLVDTVIDEMGDAYPELK------EKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLDGEDAF  392 (879)
T ss_pred             hCCCchHHHHHHHHHHHHHhhhcHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccChHHhe
Confidence            3444445 9999999999999999998      89999999999999999999999999997        1459999999


Q ss_pred             ccccCCCCCCCchhhHHHHHhhhccccccceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEe--ccCC
Q psy16318        176 GLTVPLTFGPSLGLVFLAVAEFLFLVSSCGFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGIL--LDKS  253 (474)
Q Consensus       176 ~L~~~dtyG~P~~l~~~~~~e~~~~v~~~~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~iv--ld~T  253 (474)
                      +||  ||||||+||+.++|+++|+.||..+|+   ..|+  .|. ++.  +-.+   .+....  .......++  +..|
T Consensus       393 kLY--DTyGfP~eLt~eia~e~g~~VD~~~f~---~~m~--~qr-~~a--r~~~---~~~~~~--~~~~~~~~~~~~~~t  457 (879)
T COG0013         393 KLY--DTYGFPVELTEEIAEERGLKVDEPGFE---YAME--AQR-ERA--RASA---GSGEGA--KESEDLELIDKLPET  457 (879)
T ss_pred             eeh--hcCCCCHHHHHHHHHHcCCeeccccHH---HHHH--HHH-HHh--hhcc---cccccc--chhhhhhhhccCCCc
Confidence            999  999999999999999999999999998   3565  443 211  1000   001100  001111121  2355


Q ss_pred             ccccccCCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccC
Q psy16318        254 NFYAEQGGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGT  333 (474)
Q Consensus       254 pFYAE~GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~  333 (474)
                      .|          .||= .....++|..+..++.++..++.|+++.+++|+|+|||++|||++|+|.|..           
T Consensus       458 ef----------~gY~-~~~~~~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~-----------  515 (879)
T COG0013         458 EF----------LGYD-DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFG-----------  515 (879)
T ss_pred             ee----------eecc-cccceEEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEe-----------
Confidence            55          1221 2333478888887765588899999999999999999999999999999843           


Q ss_pred             CceEEecccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeC-CEEEEEEee-ccc
Q psy16318        334 EAGILLDKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKK-KLVKLLHTL-SHT  411 (474)
Q Consensus       334 ~~~lrfDfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~-~~ivH~~~~-~~~  411 (474)
                                                 . + +                      ..|.|.||+|.+ +.++|.+.. .+.
T Consensus       516 ---------------------------~-~-~----------------------~~~~V~dvqK~~~~~~vH~~~~~~G~  544 (879)
T COG0013         516 ---------------------------D-G-G----------------------GRFEVTDVQKVGNGVIVHKGKVESGE  544 (879)
T ss_pred             ---------------------------c-C-C----------------------cEEEEEEEEEcCCceEEEEEeeccCc
Confidence                                       1 1 1                      468999999997 899999987 578


Q ss_pred             cCCCCEEEEEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318        412 LRVGDKLKLHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME  470 (474)
Q Consensus       412 l~vGd~V~~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~  470 (474)
                      |++|+.|.+.|||+||+++|+|||||||||+|||++||+||||+||+|.+++|||||.-
T Consensus       545 l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH  603 (879)
T COG0013         545 LKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSH  603 (879)
T ss_pred             cCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecC
Confidence            99999999999999999999999999999999999999999999999999999999974

>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0188|consensus Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>KOG0188|consensus Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG2105|consensus Back     alignment and domain information
>PLN02961 alanine-tRNA ligase Back     alignment and domain information
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only] Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
3hxu_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 9e-06
3hxz_A441 Crystal Structure Of Catalytic Fragment Of E. Coli 9e-06
1riq_A465 The Crystal Structure Of The Catalytic Fragment Of 4e-04
3htz_A464 Crystal Structure Of The Catalytic Fragment Of Alan 4e-04
1yfr_A465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 5e-04
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 3   QTIAKLGESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPES 62
           + +AKL     L G+ A+RLYDTYGFPVDLT  +  E+ + VD   +E A ++ +     
Sbjct: 379 EELAKLS-GDTLDGETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRARE 437
Query: 63  QAGM 66
            +G 
Sbjct: 438 ASGF 441
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query474
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 1e-25
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 3e-07
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 4e-07
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 1e-24
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 3e-14
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 1e-05
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 2e-04
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 5e-04
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 3e-22
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 3e-05
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 7e-05
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 5e-15
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 2e-14
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 4e-08
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 1e-13
1v4p_A 157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 1e-08
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Back     alignment and structure
 Score =  103 bits (259), Expect = 1e-25
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 39/150 (26%)

Query: 315 YDEGFMSNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMIG--VNDESQIELWFS 372
           Y++ ++  K+    V    +  ILLD++ FY   GGQ +D G + G  V D         
Sbjct: 10  YEDAYL--KEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVEVLDV-------- 59

Query: 373 SLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTL--SHTLRVGDKLKLHIDTARRRPI 430
                                    K +   + H +      +VGD+++L ID   R  +
Sbjct: 60  ------------------------YKDEEGNVWHVVKEPEKFKVGDEVELKIDWDYRYKL 95

Query: 431 MSNHTATHILNHALRFVLGPEADQ-KGSLV 459
           M  HT  H+L H L  VLG    Q  GS +
Sbjct: 96  MRIHTGLHLLEHVLNEVLGEGNWQLVGSGM 125
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241 Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 100.0
2zze_A752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 99.96
2ztg_A739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 99.95
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 99.92
3kew_A 241 DHHA1 domain protein; structural genomics, PSI-2, 99.91
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 99.62
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.53
3hy0_A441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 99.3
1yfs_A465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 99.3
2e1b_A216 PH0108, 216AA long hypothetical alanyl-tRNA synthe 99.29
3kew_A241 DHHA1 domain protein; structural genomics, PSI-2, 99.27
1tke_A 224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 97.5
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 97.27
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 96.7
1v4p_A157 Alanyl-tRNA synthetase; alanine-tRNA ligase, riken 94.42
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 90.95
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-39  Score=357.67  Aligned_cols=252  Identities=18%  Similarity=0.190  Sum_probs=197.1

Q ss_pred             eecCCCCCChhhhhcccccchhhhccchhhhhcccccccccCHHHHHhcCccccc-----c-----ccccCCcccccccC
Q psy16318        111 FQSHSGSINDEMVNKYPSLYRLFRTVHKQKYVQDALNVSCLSFRGVWEHGMSVGW-----T-----GVAIGALPFGLTVP  180 (474)
Q Consensus       111 Ffs~~~~v~~eei~~~e~lv~~~~~~~~q~~i~~~l~~Ee~~F~ktl~~G~~vl~-----~-----~~lsge~~F~L~~~  180 (474)
                      |+.+++.+.+.+...||+|.      .++..|..+|+.||..|.+||++|+++|+     .     +.|+|+.+|+||  
T Consensus       387 l~~lv~~~~~~m~~~ypel~------~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~Ly--  458 (752)
T 2zze_A          387 LSEIVALHIXELHKTFPEFX------EMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFY--  458 (752)
T ss_dssp             HHHHHHHHHHHHTTTCTHHH------HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHH--
T ss_pred             hhHHHHHHHHHhhhhchhhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHH--
Confidence            78899999999999999998      88899999999999999999999999886     1     349999999999  


Q ss_pred             CCCCCCchhhHHHHHhhhcccccc-ceeeccCccCcccccCCCCceeEEEEeeCCeeeecccCCceeeEeccCCcccccc
Q psy16318        181 LTFGPSLGLVFLAVAEFLFLVSSC-GFIGSDTGLGDLSQTKHTPFVKRLRFSYNKQFVDSVSSGTEAGILLDKSNFYAEQ  259 (474)
Q Consensus       181 dtyG~P~~l~~~~~~e~~~~v~~~-~f~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~G~~~~ivld~TpFYAE~  259 (474)
                      ||||||+||+.++|+|+|++||.. +|+   ++|+  .|...    ...+    .. . .+..-.... -+..|.|..  
T Consensus       459 DTyGfP~dlt~~ia~e~g~~vd~~~~F~---~~m~--~q~~~----~r~~----~~-~-~~~~~~~~~-~~~~T~~l~--  520 (752)
T 2zze_A          459 ESHGLTPEIVXEIAEKEGVKVNIPDNFY---SMVA--KEAER----TKEE----KG-E-ELVDFELLK-DLPDTRRLY--  520 (752)
T ss_dssp             HHHCCCHHHHHHHHTTSSCCCCCCTTHH---HHHH--GGGGC----C-------------CCCSSSSS-SSCCCEEHH--
T ss_pred             hccCCCHHHHHHHHHHcCCccCCcccHH---HHHH--HHHHH----Hhhc----cc-c-cchhhHHhc-cCCCceeec--
Confidence            999999999999999999999998 787   4565  44311    1111    00 0 000000000 012344411  


Q ss_pred             CCeeeecceEEeeecceeEEEeeecceeeeeeecCCeEEEEEecccceeccCCCcCccceeecceeeeeeeccCCceEEe
Q psy16318        260 GGQIYDEGFMIGVNDEGTVVGLRYNKQFVDSVSSGTEAGILLDKSNFYAEQGGQIYDEGFMSNKQFVDSVSSGTEAGILL  339 (474)
Q Consensus       260 GGQv~D~G~i~~~~~kskVlav~k~~~~~~~v~~g~~~~l~vD~t~~y~~~Ggqv~d~Gsl~~~~~~~~v~~v~~~~lrf  339 (474)
                          +|.-++  ....++|+++..             ..+++|+|+|||++||||+|+|.|..                 
T Consensus       521 ----Y~~~yl--~~~~a~Vl~i~~-------------~~VVLD~TpFYpEgGGQ~~D~G~I~~-----------------  564 (752)
T 2zze_A          521 ----YEDPFM--XEFDAXVLRVIX-------------DWVILDATAFYPEGGGQPYDTGVLIV-----------------  564 (752)
T ss_dssp             ----HHCTTC--CEEEEEEEEEET-------------TEEEESEECSCCSBTTBCCCCEEEEE-----------------
T ss_pred             ----ccCCcc--ceEEEEEEEEEc-------------CEEEEeCCCCCCCCCCCCCCEEEEEe-----------------
Confidence                222221  234567776642             35888999999888888888888832                 


Q ss_pred             cccccccCCCCccceeeeeeecCCcchhhhhhhhcccccCCCCCCCceeeEEEEeEEEeCCEEEEEEeeccccCCCCEEE
Q psy16318        340 DKSNFYAEQGGQIYDEGFMIGVNDESQIELWFSSLVNLEGSKYALPIFLQFSLSNLKKKKKLVKLLHTLSHTLRVGDKLK  419 (474)
Q Consensus       340 DfT~f~p~~ggq~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~v~k~~~~ivH~~~~~~~l~vGd~V~  419 (474)
                                            ++                        ..+.|.+|++.++.++|.+...+.+.+|+.|.
T Consensus       565 ----------------------~g------------------------~~~~V~dv~k~~g~ivH~~~~~~~l~vGd~V~  598 (752)
T 2zze_A          565 ----------------------NG------------------------REVXVTNVQXVGXVIIHXVEDPGAFXEGMIVH  598 (752)
T ss_dssp             ----------------------TT------------------------EEEEEEEEEEETTEEEEEESCGGGCCTTCEEE
T ss_pred             ----------------------CC------------------------EEEEEEeeeecCcEEEEeccccCccCcCCeEE
Confidence                                  11                        35789999999999999987667789999999


Q ss_pred             EEEcHHhHHHHHHhhHHHHHHHHHHHHHcCCCceeeccccCCCeEEEEccc
Q psy16318        420 LHIDTARRRPIMSNHTATHILNHALRFVLGPEADQKGSLVYRYHLHENIME  470 (474)
Q Consensus       420 ~~ID~~rR~~imrnHTAtHLL~~ALr~vlg~~v~q~Gs~v~~~~lr~d~~~  470 (474)
                      ++|||+||+.+|++|||+|||++||+++||.|++|+||++.++++|+||..
T Consensus       599 ~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~  649 (752)
T 2zze_A          599 GXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISH  649 (752)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEEC
T ss_pred             EEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeC
Confidence            999999999999999999999999999999999999999999999999964
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Back     alignment and structure
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 474
d2e1ba2129 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C 6e-08
d2e1ba2129 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C 2e-04
d2e1ba187 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t 1e-07
d2e1ba187 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t 2e-07
d2e1ba187 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t 3e-06
d1v4pa_151 d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo 2e-06
d1riqa1221 a.203.1.1 (A:237-457) Putative anticodon-binding d 0.002
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: AlaX-M trans-editing enzyme, C-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.0 bits (116), Expect = 6e-08
 Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 423 DTARRRPIMSNHTATHILNHALRFVLGPEA-DQKGSLVYRYHLH 465
           D   R  +M  HT  H+L H L  VLG       GS +      
Sbjct: 1   DWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGR 44
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 129 Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87 Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151 Back     information, alignment and structure
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 221 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query474
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 99.7
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 99.37
d1riqa1221 Putative anticodon-binding domain of alanyl-tRNA s 99.33
d2e1ba187 AlaX-M trans-editing enzyme, N-terminal domain {Py 99.18
d2e1ba187 AlaX-M trans-editing enzyme, N-terminal domain {Py 98.89
d1nyra3179 Threonyl-tRNA synthetase (ThrRS), second 'addition 96.8
d2e1ba2129 AlaX-M trans-editing enzyme, C-terminal domain {Py 93.96
d1v4pa_151 Hypothetical protein PH0574 {Archaeon Pyrococcus h 91.41
d1u9pa136 Arc repressor {Salmonella bacteriophage P22 [TaxId 85.38
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: All alpha proteins
fold: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
superfamily: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
family: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
domain: Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.70  E-value=5.6e-19  Score=168.13  Aligned_cols=57  Identities=33%  Similarity=0.632  Sum_probs=52.0

Q ss_pred             CCCCccCcceeeeeeccCCCcHHhHHHHHHHcCceecHHHHHHHHHHhhcCCCcccCCc
Q psy16318          9 GESKVLPGDVAWRLYDTYGFPVDLTQLMVEEKGLSVDMEVYEDAKKKAQSEPESQAGME   67 (474)
Q Consensus         9 ~~~~~l~G~~aF~LydTyGfP~dlt~~ia~e~g~~vD~~~f~~~m~~q~~~~~sr~~~~   67 (474)
                      .+.+.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++  ||++++
T Consensus       137 ~~~~~l~g~~af~LydTyGfP~elt~eia~e~gl~vD~~gF~~~m~eqre~--Sr~a~k  193 (221)
T d1riqa1         137 EGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRER--ARKHFK  193 (221)
T ss_dssp             TTCCEECHHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHH--HSCC--
T ss_pred             cCCCCCCHHHHHHHHHccccCHHHHHHHHHHhhhcccHHHHHHHHHHHHHH--HHHhhc
Confidence            456789999999999999999999999999999999999999999999999  887654
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]} Back     information, alignment and structure