Psyllid ID: psy1631


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70-------
MVTLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKDEPEAEK
cccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccc
cEEEEccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccc
mvtlldtyhpqscltsVVHFglglwrtpiadldrpgsfayhmSRSIHLVVDLLSEIKDAKTLMDIAVALkdepeaek
mvtlldtyhpqscLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVAlkdepeaek
MVTLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKDEPEAEK
***LLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVAL********
*VTLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAV***D******
MVTLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKDEPEAEK
MVTLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKD******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVTLLDTYHPQSCLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKDEPEAEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query77 2.2.26 [Sep-21-2011]
Q9Y6J0 2220 Calcineurin-binding prote yes N/A 0.844 0.029 0.4 2e-10
O88480 2182 Calcineurin-binding prote yes N/A 0.844 0.029 0.4 2e-10
>sp|Q9Y6J0|CABIN_HUMAN Calcineurin-binding protein cabin-1 OS=Homo sapiens GN=CABIN1 PE=1 SV=1 Back     alignment and function desciption
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 46/65 (70%)

Query: 13   CLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKDE 72
            C  +  +F  G+WR P+ ++DRPGSFA+HM+RSI L++ +L++++D  TL+ ++  L+  
Sbjct: 1573 CERNKTNFFNGIWRIPVDEIDRPGSFAWHMNRSIVLLLKVLAQLRDHSTLLKVSSMLQRT 1632

Query: 73   PEAEK 77
            P+  K
Sbjct: 1633 PDQGK 1637




May be required for replication-independent chromatin assembly. May serve as a negative regulator of T-cell receptor (TCR) signaling via inhibition of calcineurin. Inhibition of activated calcineurin is dependent on both PKC and calcium signals.
Homo sapiens (taxid: 9606)
>sp|O88480|CABIN_RAT Calcineurin-binding protein cabin-1 OS=Rattus norvegicus GN=Cabin1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query77
328707865 1927 PREDICTED: calcineurin-binding protein c 0.766 0.030 0.542 2e-12
242020592 2138 conserved hypothetical protein [Pediculu 0.766 0.027 0.491 1e-10
32146448689 hypothetical protein DAPPUDRAFT_37199 [D 0.714 0.617 0.527 4e-10
224072116 2243 PREDICTED: calcineurin-binding protein c 0.844 0.028 0.430 6e-10
326929908 2203 PREDICTED: calcineurin-binding protein c 0.844 0.029 0.430 1e-09
363740130 2174 PREDICTED: calcineurin-binding protein c 0.844 0.029 0.430 1e-09
390458677 2027 PREDICTED: LOW QUALITY PROTEIN: calcineu 0.844 0.032 0.4 7e-09
354492002 2193 PREDICTED: calcineurin-binding protein c 0.844 0.029 0.4 7e-09
70995287 2187 calcineurin binding protein 1 [Mus muscu 0.844 0.029 0.4 7e-09
223462245 2187 Calcineurin binding protein 1 [Mus muscu 0.844 0.029 0.4 7e-09
>gi|328707865|ref|XP_003243527.1| PREDICTED: calcineurin-binding protein cabin-1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 45/59 (76%)

Query: 19   HFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKDEPEAEK 77
            +F  G+WR P++++DRPGSFAYHMSR IHL++D L E  D K L+D+A+ LK  P+ +K
Sbjct: 1406 NFFHGVWRIPVSEIDRPGSFAYHMSRCIHLLLDFLKETGDHKMLLDLAIQLKYIPDLDK 1464




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020592|ref|XP_002430736.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515933|gb|EEB17998.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|321464486|gb|EFX75494.1| hypothetical protein DAPPUDRAFT_37199 [Daphnia pulex] Back     alignment and taxonomy information
>gi|224072116|ref|XP_002196855.1| PREDICTED: calcineurin-binding protein cabin-1-like [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|326929908|ref|XP_003211095.1| PREDICTED: calcineurin-binding protein cabin-1-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|363740130|ref|XP_415231.3| PREDICTED: calcineurin-binding protein cabin-1-like [Gallus gallus] Back     alignment and taxonomy information
>gi|390458677|ref|XP_002806598.2| PREDICTED: LOW QUALITY PROTEIN: calcineurin-binding protein cabin-1-like, partial [Callithrix jacchus] Back     alignment and taxonomy information
>gi|354492002|ref|XP_003508141.1| PREDICTED: calcineurin-binding protein cabin-1-like [Cricetulus griseus] gi|344256047|gb|EGW12151.1| Calcineurin-binding protein cabin-1 [Cricetulus griseus] Back     alignment and taxonomy information
>gi|70995287|ref|NP_766137.2| calcineurin binding protein 1 [Mus musculus] gi|148699944|gb|EDL31891.1| calcineurin binding protein 1, isoform CRA_a [Mus musculus] Back     alignment and taxonomy information
>gi|223462245|gb|AAI50826.1| Calcineurin binding protein 1 [Mus musculus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query77
UNIPROTKB|E1BUF4 2168 CABIN1 "Uncharacterized protei 0.844 0.029 0.430 2.7e-09
UNIPROTKB|B5MEB3 590 CABIN1 "Calcineurin binding pr 0.714 0.093 0.436 4.8e-09
UNIPROTKB|G5E9F3 2141 CABIN1 "Calcineurin-binding pr 0.844 0.030 0.4 7e-09
RGD|620263 2182 Cabin1 "calcineurin binding pr 0.844 0.029 0.4 7.1e-09
UNIPROTKB|F1PJD2 2213 CABIN1 "Uncharacterized protei 0.844 0.029 0.4 7.2e-09
UNIPROTKB|Q9Y6J0 2220 CABIN1 "Calcineurin-binding pr 0.844 0.029 0.4 7.3e-09
UNIPROTKB|G3X746 2164 CABIN1 "Uncharacterized protei 0.844 0.030 0.384 1.5e-08
UNIPROTKB|E1BUF4 CABIN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 153 (58.9 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 28/65 (43%), Positives = 46/65 (70%)

Query:    13 CLTSVVHFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKDE 72
             C  +  +F  G+WR P+ ++DRPGSFA HM+RSI L++++LS++KD  TL+ ++  L+  
Sbjct:  1567 CERNKTNFFNGIWRIPVDEIDRPGSFASHMNRSIVLLLNVLSQLKDYNTLLKVSSMLQRT 1626

Query:    73 PEAEK 77
             P+  K
Sbjct:  1627 PDQGK 1631




GO:0005737 "cytoplasm" evidence=IEA
GO:0016235 "aggresome" evidence=IEA
UNIPROTKB|B5MEB3 CABIN1 "Calcineurin binding protein 1, isoform CRA_c" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G5E9F3 CABIN1 "Calcineurin-binding protein cabin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|620263 Cabin1 "calcineurin binding protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PJD2 CABIN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y6J0 CABIN1 "Calcineurin-binding protein cabin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|G3X746 CABIN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 77
PF1399829 MgrB: MgrB protein 80.03
>PF13998 MgrB: MgrB protein Back     alignment and domain information
Probab=80.03  E-value=0.67  Score=25.81  Aligned_cols=15  Identities=20%  Similarity=0.281  Sum_probs=13.1

Q ss_pred             cccccccccccccccc
Q psy1631          12 SCLTSVVHFGLGLWRT   27 (77)
Q Consensus        12 fc~rnktNFFnGiWri   27 (77)
                      +|+.- .+||+||++|
T Consensus         9 ~CDQg-~~F~~GiC~i   23 (29)
T PF13998_consen    9 YCDQG-EQFFSGICSI   23 (29)
T ss_pred             HhcCC-CCceeeeeEE
Confidence            58866 8999999987




Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query77
d1h97a_147 Trematode hemoglobin/myoglobin {Paramphistomum epi 86.39
>d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]} Back     information, alignment and structure
class: All alpha proteins
fold: Globin-like
superfamily: Globin-like
family: Globins
domain: Trematode hemoglobin/myoglobin
species: Paramphistomum epiclitum [TaxId: 54403]
Probab=86.39  E-value=0.59  Score=28.65  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=46.8

Q ss_pred             ccccccccccccccCCCCchhHHHHHHHHHHHHHHHhcCcHhHHHHHHHHhccC
Q psy1631          19 HFGLGLWRTPIADLDRPGSFAYHMSRSIHLVVDLLSEIKDAKTLMDIAVALKDE   72 (77)
Q Consensus        19 NFFnGiWriPv~dIDRPGsFa~Hm~Rsv~LLl~vL~e~~D~~tLl~l~~~L~r~   72 (77)
                      ++|...=.+|.+++.-...|.+|..|-+.-+-++...++|.+.|......|.++
T Consensus        44 ~~F~~~~~~~~~~l~~~~~~~~ha~~v~~~l~~~v~~ldd~~~l~~~l~~lg~~   97 (147)
T d1h97a_          44 SHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKD   97 (147)
T ss_dssp             GGSGGGTTCCTTTGGGSHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHT
T ss_pred             HhhhhhccccHHhhhcCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Confidence            566666667999999999999999999999999999999999998888777653