Psyllid ID: psy16321

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MMCSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRNG
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHcccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEHHHHHHHHHHcccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHcccHHHHHHHHHHHHccccccHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHcccEEEEEccHHHHHHHHcccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mmcsykalkkrgslDVQIQEIKEsvelplthpeyyeemgikppkgvilygppgtgkTLLAKAVANQTSATFLRVVGSELIQKylgdgpklVRVALVPEVRNG
Flexible Loop (DISEMBL)
mmcsykalkkrgsldvqiQEIKEsvelplthpEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIqkylgdgpklvrvalvpevrng
Low Complexity Region (SEG)
MMCSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRNG
Disordered region (IsUnstruct)
*****************IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALV******
Disordered Region (DISOPRED)
***SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPE****
Disordered Region (DISEMBL)
MMCSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRNG
Disordered Region (DISPRO)
MMCSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMCSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRNG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
P48601	439	26S protease regulatory s	yes	N/A	0.794	0.184	0.975	4e-40
P62193	440	26S protease regulatory s	yes	N/A	0.794	0.184	0.975	9e-40
P62192	440	26S protease regulatory s	yes	N/A	0.794	0.184	0.975	9e-40
P62191	440	26S protease regulatory s	yes	N/A	0.794	0.184	0.975	9e-40
Q90732	440	26S protease regulatory s	yes	N/A	0.794	0.184	0.975	1e-39
O16368	443	Probable 26S protease reg	yes	N/A	0.794	0.182	0.913	9e-38
P36612	448	26S protease regulatory s	yes	N/A	0.794	0.180	0.913	6e-37
P40327	437	26S protease regulatory s	yes	N/A	0.794	0.185	0.901	1e-36
Q55BV5	439	26S protease regulatory s	yes	N/A	0.794	0.184	0.876	4e-36
P46466	448	26S protease regulatory s	yes	N/A	0.794	0.180	0.888	6e-36

>sp|P48601|PRS4_DROME 26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=2 SV=2

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 187 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 246

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 247 LRVVGSELIQKYLGDGPKLVR 267

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.
Drosophila melanogaster (taxid: 7227)

>sp|P62193|PRS4_RAT 26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1

 Score =  161 bits (408), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 248 LRVVGSELIQKYLGDGPKLVR 268

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Rattus norvegicus (taxid: 10116)

>sp|P62192|PRS4_MOUSE 26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1

 Score =  161 bits (408), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 248 LRVVGSELIQKYLGDGPKLVR 268

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Mus musculus (taxid: 10090)

>sp|P62191|PRS4_HUMAN 26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1

 Score =  161 bits (408), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 248 LRVVGSELIQKYLGDGPKLVR 268

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Homo sapiens (taxid: 9606)

>sp|Q90732|PRS4_CHICK 26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 248 LRVVGSELIQKYLGDGPKLVR 268

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Gallus gallus (taxid: 9031)

>sp|O16368|PRS4_CAEEL Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=3 SV=1

 Score =  155 bits (391), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 74/81 (91%), Positives = 78/81 (96%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKE+VELPLTHPEYYEEMGI+PPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 191 GGLDQQIQEIKEAVELPLTHPEYYEEMGIRPPKGVILYGCPGTGKTLLAKAVANQTSATF 250

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LR+VGSELIQKYLGDGPK+VR
Sbjct: 251 LRIVGSELIQKYLGDGPKMVR 271

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Caenorhabditis elegans (taxid: 6239)

>sp|P36612|PRS4_SCHPO 26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mts2 PE=2 SV=1

 Score =  152 bits (384), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 74/81 (91%), Positives = 77/81 (95%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ QIQEIKE+VELPLTHPE YEEMGIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 194 GGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 253

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGP+LVR
Sbjct: 254 LRVVGSELIQKYLGDGPRLVR 274

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40327|PRS4_YEAST 26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPT2 PE=1 SV=3

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 76/81 (93%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ QIQEIKESVELPLTHPE YEEMGIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 185 GGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LR+VGSELIQKYLGDGP+L R
Sbjct: 245 LRIVGSELIQKYLGDGPRLCR 265

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity). Has ATPase activity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q55BV5|PRS4_DICDI 26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1

 Score =  149 bits (377), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/81 (87%), Positives = 77/81 (95%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ Q+QE+KE++ELPLTHPE YEE+GIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 187 GGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 246

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 247 LRVVGSELIQKYLGDGPKLVR 267

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex (By similarity). Plays an important role in regulating both growth and multicellular development.

Dictyostelium discoideum (taxid: 44689)

>sp|P46466|PRS4_ORYSJ 26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/81 (88%), Positives = 76/81 (93%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKE+VELPLTHPE YE++GI+PPKGVILYG PGTGKTLLAKAVAN TSATF
Sbjct: 196 GGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATF 255

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 256 LRVVGSELIQKYLGDGPKLVR 276

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
357620831	334	26S protease regulatory subunit [Danaus	0.794	0.242	0.975	1e-38
1066065	439	P26s4 [Drosophila melanogaster]	0.794	0.184	0.975	1e-38
344235811	477	26S protease regulatory subunit 4 [Crice	0.794	0.169	0.975	1e-38
289740351	439	26S proteasome regulatory complex ATPase	0.794	0.184	0.975	1e-38
291229298	227	PREDICTED: protease (prosome, macropain)	0.794	0.356	0.975	2e-38
194910105	439	GG12390 [Drosophila erecta] gi|195445240	0.794	0.184	0.975	2e-38
307199279	486	26S protease regulatory subunit 4 [Harpe	0.794	0.166	0.975	2e-38
195390229	444	GJ24070 [Drosophila virilis] gi|19415185	0.794	0.182	0.975	2e-38
195112656	439	GI22277 [Drosophila mojavensis] gi|19391	0.794	0.184	0.975	2e-38
157131453	438	26S protease regulatory subunit [Aedes a	0.794	0.184	0.975	2e-38

>gi|357620831|gb|EHJ72875.1| 26S protease regulatory subunit [Danaus plexippus]

 Score =  163 bits (413), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 82  GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 141

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 142 LRVVGSELIQKYLGDGPKLVR 162

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1066065|gb|AAB34134.1| P26s4 [Drosophila melanogaster]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 187 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 246

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 247 LRVVGSELIQKYLGDGPKLVR 267

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344235811|gb|EGV91914.1| 26S protease regulatory subunit 4 [Cricetulus griseus]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 248 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 307

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 308 LRVVGSELIQKYLGDGPKLVR 328

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|289740351|gb|ADD18923.1| 26S proteasome regulatory complex ATPase RPT2 [Glossina morsitans morsitans]

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 187 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 246

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 247 LRVVGSELIQKYLGDGPKLVR 267

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291229298|ref|XP_002734612.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 1-like, partial [Saccoglossus kowalevskii]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
          G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 19 GGLDAQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 78

Query: 72 LRVVGSELIQKYLGDGPKLVR 92
          LRVVGSELIQKYLGDGPKLVR
Sbjct: 79 LRVVGSELIQKYLGDGPKLVR 99

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|194910105|ref|XP_001982075.1| GG12390 [Drosophila erecta] gi|195445240|ref|XP_002070237.1| GK11948 [Drosophila willistoni] gi|195505012|ref|XP_002099325.1| GE10845 [Drosophila yakuba] gi|190656713|gb|EDV53945.1| GG12390 [Drosophila erecta] gi|194166322|gb|EDW81223.1| GK11948 [Drosophila willistoni] gi|194185426|gb|EDW99037.1| GE10845 [Drosophila yakuba]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 187 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 246

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 247 LRVVGSELIQKYLGDGPKLVR 267

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199279|gb|EFN79932.1| 26S protease regulatory subunit 4 [Harpegnathos saltator]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 234 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 293

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 294 LRVVGSELIQKYLGDGPKLVR 314

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195390229|ref|XP_002053771.1| GJ24070 [Drosophila virilis] gi|194151857|gb|EDW67291.1| GJ24070 [Drosophila virilis]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 192 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 251

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 252 LRVVGSELIQKYLGDGPKLVR 272

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112656|ref|XP_002000888.1| GI22277 [Drosophila mojavensis] gi|193917482|gb|EDW16349.1| GI22277 [Drosophila mojavensis]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 187 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 246

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 247 LRVVGSELIQKYLGDGPKLVR 267

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131453|ref|XP_001655853.1| 26S protease regulatory subunit [Aedes aegypti] gi|94468994|gb|ABF18346.1| 26S proteasome regulatory chain 4 [Aedes aegypti] gi|108871524|gb|EAT35749.1| AAEL012095-PA [Aedes aegypti]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct: 186 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 245

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 246 LRVVGSELIQKYLGDGPKLVR 266

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
FB|FBgn0015282	439	Rpt2 "Regulatory particle trip	0.794	0.184	0.975	8.9e-38
UNIPROTKB|F1NSP7	439	PSMC1 "26S protease regulatory	0.794	0.184	0.975	1.9e-37
UNIPROTKB|F1NTZ4	438	PSMC1 "26S protease regulatory	0.794	0.184	0.975	1.9e-37
UNIPROTKB|Q90732	440	PSMC1 "26S protease regulatory	0.794	0.184	0.975	1.9e-37
UNIPROTKB|A4FUZ3	440	PSMC1 "Proteasome (Prosome, ma	0.794	0.184	0.975	1.9e-37
UNIPROTKB|F1PQ40	440	PSMC1 "Uncharacterized protein	0.794	0.184	0.975	1.9e-37
UNIPROTKB|B4DR63	367	PSMC1 "cDNA FLJ58247, highly s	0.794	0.220	0.975	1.9e-37
UNIPROTKB|P62191	440	PSMC1 "26S protease regulatory	0.794	0.184	0.975	1.9e-37
UNIPROTKB|F2Z5J1	440	PSMC1 "Uncharacterized protein	0.794	0.184	0.975	1.9e-37
MGI|MGI:106054	440	Psmc1 "protease (prosome, macr	0.794	0.184	0.975	1.9e-37

FB|FBgn0015282 Rpt2 "Regulatory particle triple-A ATPase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   187 GGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 246

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   247 LRVVGSELIQKYLGDGPKLVR 267

GO:0006508 "proteolysis" evidence=ISS;IDA;NAS

GO:0000502 "proteasome complex" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0016887 "ATPase activity" evidence=NAS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0005838 "proteasome regulatory particle" evidence=ISS;IDA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

UNIPROTKB|F1NSP7 PSMC1 "26S protease regulatory subunit 4" [Gallus gallus (taxid:9031)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   187 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 246

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   247 LRVVGSELIQKYLGDGPKLVR 267

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IEA

UNIPROTKB|F1NTZ4 PSMC1 "26S protease regulatory subunit 4" [Gallus gallus (taxid:9031)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   186 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 245

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   246 LRVVGSELIQKYLGDGPKLVR 266

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IEA

UNIPROTKB|Q90732 PSMC1 "26S protease regulatory subunit 4" [Gallus gallus (taxid:9031)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   248 LRVVGSELIQKYLGDGPKLVR 268

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=ISS

UNIPROTKB|A4FUZ3 PSMC1 "Proteasome (Prosome, macropain) 26S subunit, ATPase, 1" [Bos taurus (taxid:9913)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   248 LRVVGSELIQKYLGDGPKLVR 268

GO:0022624 "proteasome accessory complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

UNIPROTKB|F1PQ40 PSMC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   248 LRVVGSELIQKYLGDGPKLVR 268

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B4DR63 PSMC1 "cDNA FLJ58247, highly similar to 26S protease regulatory subunit 4" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   115 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 174

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   175 LRVVGSELIQKYLGDGPKLVR 195

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P62191 PSMC1 "26S protease regulatory subunit 4" [Homo sapiens (taxid:9606)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   248 LRVVGSELIQKYLGDGPKLVR 268

GO:0005524 "ATP binding" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0000502 "proteasome complex" evidence=NAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5J1 PSMC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   248 LRVVGSELIQKYLGDGPKLVR 268

GO:0022624 "proteasome accessory complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

MGI|MGI:106054 Psmc1 "protease (prosome, macropain) 26S subunit, ATPase 1" [Mus musculus (taxid:10090)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/81 (97%), Positives = 79/81 (97%)

Query:    12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             G LD QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF
Sbjct:   188 GGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 247

Query:    72 LRVVGSELIQKYLGDGPKLVR 92
             LRVVGSELIQKYLGDGPKLVR
Sbjct:   248 LRVVGSELIQKYLGDGPKLVR 268

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017025 "TBP-class protein binding" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4G0S4	PAN_METM5	No assigned EC number	0.6913	0.7941	0.1990	yes	N/A
P36612	PRS4_SCHPO	No assigned EC number	0.9135	0.7941	0.1808	yes	N/A
A3CV35	PAN_METMJ	No assigned EC number	0.7160	0.7941	0.1966	yes	N/A
P46466	PRS4_ORYSJ	No assigned EC number	0.8888	0.7941	0.1808	yes	N/A
O28303	PAN_ARCFU	No assigned EC number	0.7530	0.7941	0.2035	yes	N/A
P48601	PRS4_DROME	No assigned EC number	0.9753	0.7941	0.1845	yes	N/A
A6UQT3	PAN_METVS	No assigned EC number	0.6913	0.7941	0.1990	yes	N/A
O16368	PRS4_CAEEL	No assigned EC number	0.9135	0.7941	0.1828	yes	N/A
B8GGN4	PAN_METPE	No assigned EC number	0.7037	0.7941	0.1966	yes	N/A
Q55BV5	PRS4_DICDI	No assigned EC number	0.8765	0.7941	0.1845	yes	N/A
Q9SZD4	PRS4A_ARATH	No assigned EC number	0.8888	0.7941	0.1828	yes	N/A
Q6LWR0	PAN_METMP	No assigned EC number	0.6913	0.7941	0.1990	yes	N/A
P40327	PRS4_YEAST	No assigned EC number	0.9012	0.7941	0.1853	yes	N/A
Q8SRH0	PRS4_ENCCU	No assigned EC number	0.8765	0.7941	0.1910	yes	N/A
Q2FQ56	PAN_METHJ	No assigned EC number	0.6790	0.7941	0.1966	yes	N/A
B6YXR2	PAN_THEON	No assigned EC number	0.6375	0.7843	0.2010	yes	N/A
Q5JHS5	PAN_PYRKO	No assigned EC number	0.65	0.7843	0.2015	yes	N/A
Q8TI88	PAN_METAC	No assigned EC number	0.7283	0.7941	0.1923	yes	N/A
Q9SL67	PRS4B_ARATH	No assigned EC number	0.8888	0.7941	0.1828	yes	N/A
Q0W257	PAN_UNCMA	No assigned EC number	0.6790	0.7941	0.1942	yes	N/A
O26824	PAN_METTH	No assigned EC number	0.6	0.8529	0.2121	yes	N/A
Q8U4H3	PAN_PYRFU	No assigned EC number	0.65	0.7843	0.2020	yes	N/A
A7I8B8	PAN_METB6	No assigned EC number	0.6790	0.7941	0.1857	yes	N/A
P62191	PRS4_HUMAN	No assigned EC number	0.9753	0.7941	0.1840	yes	N/A
P62192	PRS4_MOUSE	No assigned EC number	0.9753	0.7941	0.1840	yes	N/A
P62193	PRS4_RAT	No assigned EC number	0.9753	0.7941	0.1840	yes	N/A
Q58576	PAN_METJA	No assigned EC number	0.6790	0.7941	0.1883	yes	N/A
A6VHR1	PAN_METM7	No assigned EC number	0.6913	0.7941	0.1990	yes	N/A
A9A916	PAN_METM6	No assigned EC number	0.6913	0.7941	0.1990	yes	N/A
Q90732	PRS4_CHICK	No assigned EC number	0.9753	0.7941	0.1840	yes	N/A
Q8PY58	PAN_METMA	No assigned EC number	0.7407	0.7941	0.1928	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	2e-55
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	4e-54
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	1e-50
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	2e-45
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	5e-42
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	8e-31
TIGR03689	512	TIGR03689, pup_AAA, proteasome ATPase	9e-29
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	1e-26
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	2e-26
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	4e-22
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	2e-20
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	5e-19
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	3e-18
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	6e-15
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	9e-15
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	1e-12
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	2e-11
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	3e-08
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	3e-07
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	4e-07
PRK13341	725	PRK13341, PRK13341, recombination factor protein R	5e-07
smart00382	148	smart00382, AAA, ATPases associated with a variety	7e-07
PRK08116	268	PRK08116, PRK08116, hypothetical protein; Validate	1e-05
CHL00195	489	CHL00195, ycf46, Ycf46; Provisional	2e-05
TIGR03922	557	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas	2e-05
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	2e-05
PRK00080	328	PRK00080, ruvB, Holliday junction DNA helicase Ruv	6e-05
TIGR02928	365	TIGR02928, TIGR02928, orc1/cdc6 family replication	7e-05
pfam07726	131	pfam07726, AAA_3, ATPase family associated with va	8e-05
PHA02544	316	PHA02544, 44, clamp loader, small subunit; Provisi	1e-04
COG0466	782	COG0466, Lon, ATP-dependent Lon protease, bacteria	1e-04
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	1e-04
pfam05673	248	pfam05673, DUF815, Protein of unknown function (DU	1e-04
COG1484	254	COG1484, DnaC, DNA replication protein [DNA replic	2e-04
COG2255	332	COG2255, RuvB, Holliday junction resolvasome, heli	3e-04
pfam07724	168	pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	4e-04
CHL00206	2281	CHL00206, ycf2, Ycf2; Provisional	5e-04
pfam05496	231	pfam05496, RuvB_N, Holliday junction DNA helicase	6e-04
COG1224	450	COG1224, TIP49, DNA helicase TIP49, TBP-interactin	7e-04
pfam13207	114	pfam13207, AAA_17, AAA domain	8e-04
pfam01078	207	pfam01078, Mg_chelatase, Magnesium chelatase, subu	8e-04
pfam00910	105	pfam00910, RNA_helicase, RNA helicase	8e-04
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	9e-04
pfam06068	395	pfam06068, TIP49, TIP49 C-terminus	0.001
COG2607	287	COG2607, COG2607, Predicted ATPase (AAA+ superfami	0.001
pfam13401	124	pfam13401, AAA_22, AAA domain	0.002
pfam01057	271	pfam01057, Parvo_NS1, Parvovirus non-structural pr	0.002
COG1474	366	COG1474, CDC6, Cdc6-related protein, AAA superfami	0.002
pfam01695	178	pfam01695, IstB_IS21, IstB-like ATP binding protei	0.003
TIGR00635	305	TIGR00635, ruvB, Holliday junction DNA helicase, R	0.003
PRK06835	329	PRK06835, PRK06835, DNA replication protein DnaC;	0.003
COG3172	187	COG3172, NadR, Predicted ATPase/kinase involved in	0.004
TIGR00763	775	TIGR00763, lon, ATP-dependent protease La	0.004

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score =  176 bits (449), Expect = 2e-55
 Identities = 72/81 (88%), Positives = 78/81 (96%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ QIQEIKE+VELPLTHPE Y+++GIKPPKGVILYGPPGTGKTLLAKAVAN+TSATF
Sbjct: 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LRVVGSELIQKYLGDGPKLVR
Sbjct: 246 LRVVGSELIQKYLGDGPKLVR 266

Length = 438

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  172 bits (439), Expect = 4e-54
 Identities = 63/81 (77%), Positives = 73/81 (90%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QIQEI+E VELPL +PE +EE+GI PPKGV+LYGPPGTGKTLLAKAVANQT ATF
Sbjct: 154 GGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF 213

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +RVVGSEL+QKY+G+G +LVR
Sbjct: 214 IRVVGSELVQKYIGEGARLVR 234

Length = 406

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score =  163 bits (415), Expect = 1e-50
 Identities = 57/81 (70%), Positives = 75/81 (92%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ QI+E++E+VELPL  PE +EE+GI+PPKGV+LYGPPGTGKTLLAKAVA++T+ATF
Sbjct: 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 193

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +RVVGSEL+QK++G+G +LVR
Sbjct: 194 IRVVGSELVQKFIGEGARLVR 214

Length = 389

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score =  150 bits (380), Expect = 2e-45
 Identities = 59/81 (72%), Positives = 74/81 (91%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD+Q QEI+E+VELPLT PE YE++GI PP+GV+LYGPPGTGKT+LAKAVA+ T+ATF
Sbjct: 148 GGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +RVVGSE +QKYLG+GP++VR
Sbjct: 208 IRVVGSEFVQKYLGEGPRMVR 228

Length = 398

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score =  140 bits (354), Expect = 5e-42
 Identities = 59/81 (72%), Positives = 76/81 (93%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ QI+EI+E+VELPL HPE +EE+GI+PPKGV+LYGPPGTGKTLLAKAVA++T+ATF
Sbjct: 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +RVVGSEL++KY+G+G +LVR
Sbjct: 185 IRVVGSELVRKYIGEGARLVR 205

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score =  112 bits (283), Expect = 8e-31
 Identities = 44/86 (51%), Positives = 64/86 (74%)

Query: 7   ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
            L   G L+   +E+KE++E PL  PE + ++G++PPKGV+LYGPPGTGKTLLAKAVA +
Sbjct: 240 TLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE 299

Query: 67  TSATFLRVVGSELIQKYLGDGPKLVR 92
           + + F+ V GSEL+ K++G+  K +R
Sbjct: 300 SRSRFISVKGSELLSKWVGESEKNIR 325

Length = 494

>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase

 Score =  107 bits (268), Expect = 9e-29
 Identities = 46/92 (50%), Positives = 62/92 (67%), Gaps = 10/92 (10%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN------ 65
           G L  QI++I+++VELP  HPE Y E G+KPPKGV+LYGPPG GKTL+AKAVAN      
Sbjct: 185 GGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAVANSLAARI 244

Query: 66  ----QTSATFLRVVGSELIQKYLGDGPKLVRV 93
                  + FL + G EL+ KY+G+  + +R+
Sbjct: 245 GAEGGGKSYFLNIKGPELLNKYVGETERQIRL 276

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =  101 bits (254), Expect = 1e-26
 Identities = 45/81 (55%), Positives = 61/81 (75%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L    ++I+E VELP+ HPE +E +GI+PPKGV+LYGPPGTGKTLLAKAVAN+  A F
Sbjct: 181 GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF 240

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           + + G E++ KY G+  + +R
Sbjct: 241 ISINGPEIMSKYYGESEERLR 261

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score =  101 bits (252), Expect = 2e-26
 Identities = 46/81 (56%), Positives = 64/81 (79%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+   QE++E+VE PL HPE +E+MGI+PPKGV+L+GPPGTGKTLLAKAVA ++ A F
Sbjct: 456 GGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF 515

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           + V G E++ K++G+  K +R
Sbjct: 516 IAVRGPEILSKWVGESEKAIR 536

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 88.9 bits (221), Expect = 4e-22
 Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           +E+ E V+  L +P  + ++G K PKGV+L GPPGTGKTLLAKAVA +    F  + GS+
Sbjct: 65  EELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123

Query: 79  LIQKYLGDGPKLVR 92
            ++ ++G G   VR
Sbjct: 124 FVEMFVGVGASRVR 137

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 78.8 bits (195), Expect = 2e-20
 Identities = 27/47 (57%), Positives = 36/47 (76%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 92
          ++LYGPPGTGKT LAKAVA +  A F+ + GSEL+ KY+G+  K +R
Sbjct: 1  LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLR 47

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 80.1 bits (198), Expect = 5e-19
 Identities = 35/74 (47%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           +E +E V   L  PE +  +G K PKGV+L GPPGTGKTLLAKA+A +    F  + GSE
Sbjct: 193 EEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSE 251

Query: 79  LIQKYLGDGPKLVR 92
            ++ ++G G   VR
Sbjct: 252 FVEMFVGVGAARVR 265

Length = 638

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 77.7 bits (192), Expect = 3e-18
 Identities = 36/78 (46%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 15  DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
           D   +E+ E V+  L +P+ Y+ +G K PKGV+L GPPGTGKTLLAKAVA +    F  +
Sbjct: 156 DEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI 214

Query: 75  VGSELIQKYLGDGPKLVR 92
            GS+ ++ ++G G   VR
Sbjct: 215 SGSDFVEMFVGVGASRVR 232

Length = 596

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 68.5 bits (167), Expect = 6e-15
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           +E+ E VE  L  P  ++++G K PKGV++ GPPGTGKTLLAKA+A +    F  + GS+
Sbjct: 162 EEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 220

Query: 79  LIQKYLGDGPKLVR 92
            ++ ++G G   VR
Sbjct: 221 FVEMFVGVGASRVR 234

Length = 644

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 67.5 bits (165), Expect = 9e-15
 Identities = 31/74 (41%), Positives = 45/74 (60%)

Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           +E K    L + + E  E  G   PK V+ YGPPGTGKT++AKA+AN+     L V  +E
Sbjct: 127 EEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE 186

Query: 79  LIQKYLGDGPKLVR 92
           LI +++GDG + + 
Sbjct: 187 LIGEHVGDGARRIH 200

Length = 368

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 37/70 (52%), Positives = 52/70 (74%), Gaps = 1/70 (1%)

Query: 26 ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 85
          ELPL  PE ++++GI+PPKGV+L+GPPGTGKTLLA+A+AN   A FL + G E++ KY+G
Sbjct: 1  ELPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALAN-EGAEFLSINGPEILSKYVG 59

Query: 86 DGPKLVRVAL 95
          +    +R   
Sbjct: 60 ESELRLRELF 69

Length = 494

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSELIQKYLGDG 87
           PPK ++LYGPPGTGKT LA+A+AN+     A FL +  S+L++  +   
Sbjct: 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAE 66

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 49.3 bits (119), Expect = 3e-08
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
          +IL+GPPGTGKT LA+ +A  T A F  +
Sbjct: 39 MILWGPPGTGKTTLARIIAGATDAPFEAL 67

Length = 413

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 17/25 (68%), Positives = 20/25 (80%)

Query: 41 KPPKGVILYGPPGTGKTLLAKAVAN 65
          KP K ++LYGPPG GKT LA A+AN
Sbjct: 37 KPKKALLLYGPPGVGKTSLAHALAN 61

Length = 482

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
          +IL+GPPGTGKT LA+ +A  T+A F  +
Sbjct: 51 MILWGPPGTGKTTLARLIAGTTNAAFEAL 79

Length = 436

>gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 17/26 (65%), Positives = 19/26 (73%)

Query: 47 ILYGPPGTGKTLLAKAVANQTSATFL 72
          ILYGPPG GKT LA+ +AN T A F 
Sbjct: 56 ILYGPPGVGKTTLARIIANHTRAHFS 81

Length = 725

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 44.3 bits (104), Expect = 7e-07
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
          P + +++ GPPG+GKT LA+A+A +       V+
Sbjct: 1  PGEVILIVGPPGSGKTTLARALARELGPPGGGVI 34

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 35  YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
           +EEM  K   G++L+G  GTGKT LA  +AN+     + V+
Sbjct: 107 FEEMK-KENVGLLLWGSVGTGKTYLAACIANELIEKGVPVI 146

Length = 268

>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 36  EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
              G+  P+G++L G  GTGK+L AKA+AN      LR
Sbjct: 252 SNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR 289

Length = 489

>gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 15/84 (17%)

Query: 17  QIQEIKESVELPLTHPEYYEEMGIKPP---KGVILYGPPGTGKTLLAKAVANQTSA-TFL 72
           Q+  +K S  + L       E G+        ++  GPPGTGKT +A+ VA        L
Sbjct: 287 QVAALKSSTAMALAR----AERGLPVAQTSNHMLFAGPPGTGKTTIARVVAKIYCGLGVL 342

Query: 73  R------VVGSELIQKYLGD-GPK 89
           R      V  ++LI +Y+G+   K
Sbjct: 343 RKPLVREVSRADLIGQYIGESEAK 366

This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
          V+L GPPG GKTLLA+A+A      F+R+
Sbjct: 46 VLLEGPPGVGKTLLARALARALGLPFVRI 74

Length = 329

>gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82
          V+LYGPPG GKT LA  +AN+     +R+     ++K
Sbjct: 54 VLLYGPPGLGKTTLANIIANEMGVN-IRITSGPALEK 89

Length = 328

>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation protein

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 42 PPKGVILYGPPGTGKTLLAKAVANQ 66
           P  V +YG  GTGKT + K V  +
Sbjct: 39 RPSNVFIYGKTGTGKTAVTKYVMKE 63

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other [DNA metabolism, DNA replication, recombination, and repair]. Length = 365

>gnl|CDD|116340 pfam07726, AAA_3, ATPase family associated with various cellular activities (AAA)

 Score = 38.3 bits (90), Expect = 8e-05
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
          V+L G PG  KTLLA+ +A      F R+
Sbjct: 2  VLLEGVPGLAKTLLARTLARSLGLDFRRI 30

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 131

>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 47 ILYGP-PGTGKTLLAKAVANQTSATFLRVVGS 77
          +L+ P PGTGKT +AKA+ N+  A  L V GS
Sbjct: 46 LLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77

Length = 316

>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 44  KGVI--LYGPPGTGKTLLAKAVANQTSATFLRV 74
           KG I  L GPPG GKT L K++A      F+R+
Sbjct: 349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381

Length = 782

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 9/67 (13%)

Query: 45  GVILYGPPGTGKTLLAKAVANQTS-ATFLRVVGS------ELIQKYL--GDGPKLVRVAL 95
           GV+L GPPGTGK+ LA+ +A   S      V  +      +L  +      G   V   L
Sbjct: 1   GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTEEDLKGRRNIDPGGASWVDGPL 60

Query: 96  VPEVRNG 102
           V   R G
Sbjct: 61  VRAAREG 67

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

>gnl|CDD|218685 pfam05673, DUF815, Protein of unknown function (DUF815)

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)

Query: 46  VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 92
           V+L+G  GTGK+ L KA+ N+ +   LR++  E+ +  LGD P +V 
Sbjct: 56  VLLWGARGTGKSSLVKALLNEYADQGLRLI--EVDKDDLGDLPDIVD 100

This family consists of several bacterial proteins of unknown function. Length = 248

>gnl|CDD|224401 COG1484, DnaC, DNA replication protein [DNA replication, recombination, and repair]

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)

Query: 43  PKGVILYGPPGTGKTLLAKAVANQT-----SATFLRVVGSELIQK 82
            + ++L GPPG GKT LA A+ N+      S  F+     +L+ K
Sbjct: 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITA--PDLLSK 147

Length = 254

>gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 13/20 (65%), Positives = 16/20 (80%)

Query: 46 VILYGPPGTGKTLLAKAVAN 65
          V+L+GPPG GKT LA  +AN
Sbjct: 55 VLLFGPPGLGKTTLAHIIAN 74

Length = 332

>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily)

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 43 PKGVILY-GPPGTGKTLLAKAVANQ---TSATFLRVVGSELIQKYL 84
          P G  L+ GP G GKT LAKA+A          +R+  SE ++++ 
Sbjct: 2  PIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHS 47

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168

>gnl|CDD|214396 CHL00206, ycf2, Ycf2; Provisional

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 37   EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK 89
             + + P +G+++ G  GTG++ L K +A  +   F+ V     + K+L + PK
Sbjct: 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITV----FLNKFLDNKPK 1672

Length = 2281

>gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATF 71
          V+LYGPPG GKT LA  +AN+     
Sbjct: 53 VLLYGPPGLGKTTLANIIANEMGVNI 78

The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231

>gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription]

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 44  KGVILYGPPGTGKTLLAKAVANQTSAT--FLRVVGSEL 79
           +G+++ GPPGTGKT LA  +A +      F+ + GSE+
Sbjct: 66  RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103

Length = 450

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 35.7 bits (82), Expect = 8e-04
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
          +++ GPPG+GK+ LAK +A +     +
Sbjct: 2  ILITGPPGSGKSTLAKKLAEKLGIPVI 28

Length = 114

>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 46 VILYGPPGTGKTLLAKA 62
          +++ GPPG+GKT+LAK 
Sbjct: 25 LLMIGPPGSGKTMLAKR 41

Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207

>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase

 Score = 35.3 bits (82), Expect = 8e-04
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
          + LYGPPG GK+ LAK +A        
Sbjct: 1  IWLYGPPGCGKSTLAKYLARALLKHLG 27

This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses. Length = 105

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 36.0 bits (83), Expect = 9e-04
 Identities = 13/51 (25%), Positives = 19/51 (37%)

Query: 33 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83
          +         P  V+L GP GTGKT L + +         +   +E    Y
Sbjct: 14 DALRRARSGGPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPY 64

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 44 KGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGSEL 79
          + V++ GPPGTGKT LA A++ +      F  + GSE+
Sbjct: 51 RAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEV 88

This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395

>gnl|CDD|225327 COG2607, COG2607, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 41  KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLV 91
            P   V+L+G  GTGK+ L KA+ N+ +   LR+V  E+ ++ L   P LV
Sbjct: 83  LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV--EVDKEDLATLPDLV 131

Length = 287

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 46 VILYGPPGTGKTLLAKAVANQ 66
           +L G  G+GKT L + +A Q
Sbjct: 7  GVLTGESGSGKTTLLRRLARQ 27

Length = 124

>gnl|CDD|216270 pfam01057, Parvo_NS1, Parvovirus non-structural protein NS1

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 46  VILYGPPGTGKTLLAKAVAN 65
           V  YGP  TGKT LA+A+A+
Sbjct: 116 VWFYGPASTGKTNLAQAIAH 135

This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity. Length = 271

>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 43 PKGVILYGPPGTGKTLLAKAVANQ 66
          P  +I+YGP GTGKT   K V  +
Sbjct: 42 PSNIIIYGPTGTGKTATVKFVMEE 65

Length = 366

>gnl|CDD|110677 pfam01695, IstB_IS21, IstB-like ATP binding protein

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%)

Query: 45 GVILYGPPGTGKTLLA-----KAVANQTSATFLRVV 75
           ++L GPPG GKT LA     +A     S  F R  
Sbjct: 49 NLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTP 84

This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function. Length = 178

>gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK 82
          ++LYGPPG GKT LA  +AN+     L++     ++K
Sbjct: 33 LLLYGPPGLGKTTLAHIIANEMG-VNLKITSGPALEK 68

All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305

>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 41  KPPKGVILYGPPGTGKTLLAKAVAN 65
           K  + ++ YG  GTGKT L+  +A 
Sbjct: 181 KNNENLLFYGNTGTGKTFLSNCIAK 205

Length = 329

>gnl|CDD|225713 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKL 90
          K V + G   +GK+ L   +AN  + T     G E + ++LG    L
Sbjct: 9  KTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFEHLGGDEAL 55

Length = 187

>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 44  KGVIL--YGPPGTGKTLLAKAVANQTSATFLRV 74
           KG IL   GPPG GKT L K++A   +  F+R 
Sbjct: 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 775

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.91
KOG0730|consensus	693		99.88
KOG0733|consensus	802		99.84
KOG0736|consensus	953		99.82
KOG0728|consensus	404		99.81
KOG0727|consensus	408		99.81
KOG0726|consensus	440		99.8
KOG0733|consensus	802		99.8
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.77
KOG0738|consensus	491		99.77
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.76
KOG0652|consensus	424		99.74
KOG0737|consensus	386		99.72
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.72
KOG0729|consensus	435		99.72
KOG0739|consensus	439		99.7
KOG0731|consensus	774		99.7
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.7
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.69
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.69
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.68
KOG0735|consensus	952		99.68
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.67
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.65
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.63
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.63
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.61
KOG0651|consensus	388		99.6
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.59
KOG0732|consensus	1080		99.59
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.59
KOG0734|consensus	752		99.58
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.57
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.56
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.55
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.54
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.54
CHL00195	489	ycf46 Ycf46; Provisional	99.53
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.53
KOG0740|consensus	428		99.52
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.51
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.51
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.5
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.5
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.49
cd03246	173	ABCC_Protease_Secretion This family represents the	99.48
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.48
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.48
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.48
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.48
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.48
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.48
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.47
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.47
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.47
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.47
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.47
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.47
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.47
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.47
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.47
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.47
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.47
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.47
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.47
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.47
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.47
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.46
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.46
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.46
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.46
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.46
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.46
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.46
CHL00176	638	ftsH cell division protein; Validated	99.46
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.46
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.46
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.46
PRK10908	222	cell division protein FtsE; Provisional	99.46
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.45
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.45
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.45
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.45
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.45
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.45
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.45
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.45
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.45
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.45
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.45
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.45
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.45
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.45
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.45
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.45
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.45
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.45
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.45
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.44
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.44
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.44
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.44
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.44
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.44
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.44
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.44
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.44
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.44
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.44
COG4559	259	ABC-type hemin transport system, ATPase component	99.43
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.43
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.43
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.43
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.43
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.43
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.43
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.43
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.43
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.43
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.43
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.43
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.43
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.43
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.42
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.42
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.42
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.42
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.42
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.42
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.42
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.42
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.42
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.42
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.42
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.42
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.42
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.42
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.42
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.42
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.42
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.42
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.41
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.41
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.41
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.41
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.41
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.41
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.41
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.41
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.41
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.41
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.4
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.4
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.4
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.4
KOG0730|consensus	693		99.4
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.4
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.4
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.39
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.39
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.39
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.39
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.39
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.39
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.39
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.39
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.39
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.39
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.39
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.39
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.39
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.38
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.38
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.38
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.38
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.38
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.38
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.38
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.38
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.38
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.38
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.38
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.38
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.38
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.37
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.37
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.37
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.37
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.37
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.37
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.37
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.37
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.37
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.37
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.37
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.36
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.36
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.36
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.36
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.35
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.35
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.35
COG4988	559	CydD ABC-type transport system involved in cytochr	99.35
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.35
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.35
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.35
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.35
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.35
PRK10938	490	putative molybdenum transport ATP-binding protein	99.35
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.35
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.35
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.35
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.35
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.35
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.35
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.35
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.35
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.35
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.35
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.35
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.35
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.35
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.35
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.35
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.35
KOG0058|consensus	716		99.35
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.35
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.34
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.34
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.34
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.34
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.34
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.34
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.34
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.34
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.34
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.33
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.33
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.33
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.33
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.33
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.33
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.32
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.32
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.32
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.32
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.32
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.32
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.32
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.32
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.32
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.32
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.31
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.31
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.3
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.3
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.3
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.3
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.3
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.3
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.3
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.3
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.3
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.29
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.29
COG4181	228	Predicted ABC-type transport system involved in ly	99.29
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.29
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.29
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.29
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.28
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.28
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.28
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.28
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.28
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.28
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.28
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.28
COG1123	539	ATPase components of various ABC-type transport sy	99.28
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.28
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.27
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.27
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.27
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.27
CHL00181	287	cbbX CbbX; Provisional	99.26
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.26
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.26
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.26
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.26
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.26
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.25
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.25
KOG0055|consensus	1228		99.25
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.25
PLN03232	1495	ABC transporter C family member; Provisional	99.25
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.25
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.25
COG4987	573	CydC ABC-type transport system involved in cytochr	99.25
KOG0057|consensus	591		99.25
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.25
KOG0741|consensus	744		99.24
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.24
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.23
PLN03130	1622	ABC transporter C family member; Provisional	99.23
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.23
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.23
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.22
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.22
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.22
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.22
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.22
PTZ00243	1560	ABC transporter; Provisional	99.22
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.21
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.21
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.21
KOG0743|consensus	457		99.21
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.21
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.21
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.2
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.2
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.2
PRK10938	490	putative molybdenum transport ATP-binding protein	99.2
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.2
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.2
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.19
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.19
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.19
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.19
KOG0056|consensus	790		99.18
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.18
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.18
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.17
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.17
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.17
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.17
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.16
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.16
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.15
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.15
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.15
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.15
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.14
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.13
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.12
PRK13409	590	putative ATPase RIL; Provisional	99.12
PLN03073	718	ABC transporter F family; Provisional	99.11
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.11
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.11
PRK11147	635	ABC transporter ATPase component; Reviewed	99.11
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.1
KOG0055|consensus	1228		99.1
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.1
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.1
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.1
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.09
PLN03211	659	ABC transporter G-25; Provisional	99.08
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.07
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.06
PRK11147	635	ABC transporter ATPase component; Reviewed	99.05
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.05
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.04
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.04
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.03
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.02
COG1123	539	ATPase components of various ABC-type transport sy	99.02
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.01
COG0488	530	Uup ATPase components of ABC transporters with dup	99.01
PF00004	132	AAA: ATPase family associated with various cellula	99.0
KOG0744|consensus	423		99.0
PLN03140	1470	ABC transporter G family member; Provisional	99.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.99
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.99
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.98
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.96
COG4172	534	ABC-type uncharacterized transport system, duplica	98.95
COG4674	249	Uncharacterized ABC-type transport system, ATPase	98.95
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.95
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.94
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.94
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.92
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.92
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.9
PRK04195	482	replication factor C large subunit; Provisional	98.9
PRK13409	590	putative ATPase RIL; Provisional	98.9
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	98.9
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	98.89
PLN03130	1622	ABC transporter C family member; Provisional	98.88
PTZ00243	1560	ABC transporter; Provisional	98.87
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.86
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.85
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.83
PLN03140	1470	ABC transporter G family member; Provisional	98.83
KOG0054|consensus	1381		98.82
PLN03232	1495	ABC transporter C family member; Provisional	98.82
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.82
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.79
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.78
CHL00206	2281	ycf2 Ycf2; Provisional	98.78
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.77
KOG0059|consensus	885		98.76
PRK09825	176	idnK D-gluconate kinase; Provisional	98.76
COG0488	530	Uup ATPase components of ABC transporters with dup	98.76
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	98.76
KOG0060|consensus	659		98.75
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	98.74
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.74
PLN03073	718	ABC transporter F family; Provisional	98.73
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.72
KOG0064|consensus	728		98.72
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.7
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.7
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.7
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.69
COG4178	604	ABC-type uncharacterized transport system, permeas	98.67
KOG0061|consensus	613		98.67
PRK12402	337	replication factor C small subunit 2; Reviewed	98.66
PHA02544	316	44 clamp loader, small subunit; Provisional	98.65
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.65
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.64
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.64
PLN03025	319	replication factor C subunit; Provisional	98.63
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.63
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.63
KOG2004|consensus	906		98.63
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.62
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	98.62
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.61
PRK15455	644	PrkA family serine protein kinase; Provisional	98.6
PRK13342	413	recombination factor protein RarA; Reviewed	98.6
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.6
smart00382	148	AAA ATPases associated with a variety of cellular	98.6
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.58
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.58
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.58
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.57
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.56
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.56
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.56
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.56
KOG0989|consensus	346		98.56
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	98.55
KOG0927|consensus	614		98.55
PRK00300	205	gmk guanylate kinase; Provisional	98.55
PRK08118	167	topology modulation protein; Reviewed	98.54
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.54
PRK05480	209	uridine/cytidine kinase; Provisional	98.54
KOG0065|consensus	1391		98.54
COG2256	436	MGS1 ATPase related to the helicase subunit of the	98.53
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.52
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.52
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.52
COG4172	534	ABC-type uncharacterized transport system, duplica	98.52
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.51
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.51
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.51
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.5
PRK10416	318	signal recognition particle-docking protein FtsY;	98.49
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.49
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.48
PRK07261	171	topology modulation protein; Provisional	98.47
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.47
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.46
KOG0054|consensus	1381		98.46
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.45
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.45
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.45
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.45
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.44
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.44
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.44
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	98.44
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.43
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	98.42
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.42
PRK00131	175	aroK shikimate kinase; Reviewed	98.42
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.41
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.41
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.4
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.39
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.39
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.39

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.4e-24  Score=149.05  Aligned_cols=97  Identities=65%  Similarity=1.020  Sum_probs=92.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|++||||++|+++|++.+++|+++|++|..+++.|+++++|+||||+|||.|+|++|...+.+++.+.+++++.+|
T Consensus       146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKY  225 (406)
T COG1222         146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKY  225 (406)
T ss_pred             CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhhh
Q psy16321         84 LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~~  100 (102)
                      .++..+..|-.|..+..
T Consensus       226 iGEGaRlVRelF~lAre  242 (406)
T COG1222         226 IGEGARLVRELFELARE  242 (406)
T ss_pred             hccchHHHHHHHHHHhh
Confidence            99999988888876653

>KOG0730|consensus

Probab=99.88  E-value=1.8e-22  Score=147.66  Aligned_cols=97  Identities=44%  Similarity=0.795  Sum_probs=91.8

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK   82 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~   82 (102)
                      .+-++|+||||+++++.+|++.+.+|++|++.|..+++.++++++++||||||||+++|++|.+...+++.+.+.++.++
T Consensus       428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk  507 (693)
T KOG0730|consen  428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK  507 (693)
T ss_pred             CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHccchhh
Q psy16321         83 YLGDGPKLVRVALVPEV   99 (102)
Q Consensus        83 ~~~~~~~~~~~~~~~q~   99 (102)
                      |++++|+..+-.|..++
T Consensus       508 ~vGeSEr~ir~iF~kAR  524 (693)
T KOG0730|consen  508 YVGESERAIREVFRKAR  524 (693)
T ss_pred             hcCchHHHHHHHHHHHh
Confidence            99999998887776554

>KOG0733|consensus

Probab=99.84  E-value=5.6e-21  Score=139.49  Aligned_cols=96  Identities=39%  Similarity=0.699  Sum_probs=91.3

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|+|||+++++..+++.++.+|.++++.|+.+++..+.+++++||||||||.|+|++|.+....++.|.+.++.++|
T Consensus       506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY  585 (802)
T KOG0733|consen  506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY  585 (802)
T ss_pred             CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      ++++|+..|..|..+.
T Consensus       586 VGESErAVR~vFqRAR  601 (802)
T KOG0733|consen  586 VGESERAVRQVFQRAR  601 (802)
T ss_pred             hhhHHHHHHHHHHHhh
Confidence            9999999888776554

>KOG0736|consensus

Probab=99.82  E-value=2.4e-20  Score=138.64  Aligned_cols=97  Identities=41%  Similarity=0.714  Sum_probs=89.6

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK   82 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~   82 (102)
                      .+-++|+||||+++++++|.+.+.+|++|+++|.+ ++.+..+++|+||||||||.++|++|.++...+..|.+.++...
T Consensus       666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM  744 (953)
T KOG0736|consen  666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM  744 (953)
T ss_pred             CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence            35689999999999999999999999999999875 67778899999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHccchhhh
Q psy16321         83 YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        83 ~~~~~~~~~~~~~~~q~~  100 (102)
                      |+|++|.+.|-+|..+..
T Consensus       745 YVGqSE~NVR~VFerAR~  762 (953)
T KOG0736|consen  745 YVGQSEENVREVFERARS  762 (953)
T ss_pred             HhcchHHHHHHHHHHhhc
Confidence            999999999988876653

>KOG0728|consensus

Probab=99.81  E-value=1.4e-19  Score=121.65  Aligned_cols=96  Identities=57%  Similarity=0.969  Sum_probs=90.2

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      --+|+-+||++.|+++|++.+++|.+||++|+++++.++++++|+||||+|||.|+++++....+.++.+++++++.++.
T Consensus       143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~i  222 (404)
T KOG0728|consen  143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI  222 (404)
T ss_pred             ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHh
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHccchhhh
Q psy16321         85 GDGPKLVRVALVPEVR  100 (102)
Q Consensus        85 ~~~~~~~~~~~~~q~~  100 (102)
                      ++..+-.|-.|+.+..
T Consensus       223 gegsrmvrelfvmare  238 (404)
T KOG0728|consen  223 GEGSRMVRELFVMARE  238 (404)
T ss_pred             hhhHHHHHHHHHHHHh
Confidence            9998888888877653

>KOG0727|consensus

Probab=99.81  E-value=1.2e-19  Score=122.05  Aligned_cols=97  Identities=60%  Similarity=1.016  Sum_probs=90.1

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|.|+||++-|+++|++.+++|+.|.+++..+++.++++++++||||||||.|++++|......++.+.+++++.++
T Consensus       150 pdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqky  229 (408)
T KOG0727|consen  150 PDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKY  229 (408)
T ss_pred             CCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhhh
Q psy16321         84 LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~~  100 (102)
                      .++..+-.|-.|..+..
T Consensus       230 lgegprmvrdvfrlake  246 (408)
T KOG0727|consen  230 LGEGPRMVRDVFRLAKE  246 (408)
T ss_pred             hccCcHHHHHHHHHHhc
Confidence            99998888877766543

>KOG0726|consensus

Probab=99.80  E-value=9.2e-20  Score=124.41  Aligned_cols=97  Identities=79%  Similarity=1.141  Sum_probs=90.1

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK   82 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~   82 (102)
                      .+..+|.||||++.|+++|++.+++|+.||+.++.+++.+++++.++|+||+|||.|++++|..-..++..+.++++..+
T Consensus       179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk  258 (440)
T KOG0726|consen  179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK  258 (440)
T ss_pred             CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHccchhh
Q psy16321         83 YLGDGPKLVRVALVPEV   99 (102)
Q Consensus        83 ~~~~~~~~~~~~~~~q~   99 (102)
                      +.++..+..|..|.-++
T Consensus       259 ylGdGpklvRqlF~vA~  275 (440)
T KOG0726|consen  259 YLGDGPKLVRELFRVAE  275 (440)
T ss_pred             HhccchHHHHHHHHHHH
Confidence            99999888887775544

>KOG0733|consensus

Probab=99.80  E-value=2.5e-19  Score=130.94  Aligned_cols=96  Identities=33%  Similarity=0.621  Sum_probs=89.6

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +.++|.+|||++.+..++.+.+.+ .++|+.|..+++.|+++++|+||||||||.|+++|||.+..+++.|.+.++++..
T Consensus       185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv  263 (802)
T KOG0733|consen  185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV  263 (802)
T ss_pred             CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence            356899999999999999999988 9999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhhh
Q psy16321         84 LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~~  100 (102)
                      .+++|.+.|-.|..+..
T Consensus       264 SGESEkkiRelF~~A~~  280 (802)
T KOG0733|consen  264 SGESEKKIRELFDQAKS  280 (802)
T ss_pred             CcccHHHHHHHHHHHhc
Confidence            99999998888766543

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.77  E-value=2e-18  Score=122.81  Aligned_cols=92  Identities=64%  Similarity=1.100  Sum_probs=81.8

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++|||++.++++|++.+.+++.+++.+..+++.++++++|+||||||||++++++++.....++.+.+.++...+
T Consensus       140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~  219 (398)
T PTZ00454        140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKY  219 (398)
T ss_pred             CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHh
Confidence            45789999999999999999999999999999999999999999999999999999999999999888888887777777


Q ss_pred             cCchHHHHHHcc
Q psy16321         84 LGDGPKLVRVAL   95 (102)
Q Consensus        84 ~~~~~~~~~~~~   95 (102)
                      .++.+...+..|
T Consensus       220 ~ge~~~~lr~lf  231 (398)
T PTZ00454        220 LGEGPRMVRDVF  231 (398)
T ss_pred             cchhHHHHHHHH
Confidence            777665544333

>KOG0738|consensus

Probab=99.77  E-value=1.4e-18  Score=121.78  Aligned_cols=94  Identities=40%  Similarity=0.624  Sum_probs=88.0

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      -..|+||.|+.+.++.|++++.+|+..|++|..+. .|.++++++||||+|||.|+|+++.++..++++|....+.++|.
T Consensus       208 ~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwR  286 (491)
T KOG0738|consen  208 NIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWR  286 (491)
T ss_pred             CcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhc
Confidence            36899999999999999999999999999999865 78899999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHccchhh
Q psy16321         85 GDGPKLVRVALVPEV   99 (102)
Q Consensus        85 ~~~~~~~~~~~~~q~   99 (102)
                      +++|+..|+.|..+.
T Consensus       287 GeSEKlvRlLFemAR  301 (491)
T KOG0738|consen  287 GESEKLVRLLFEMAR  301 (491)
T ss_pred             cchHHHHHHHHHHHH
Confidence            999999998887654

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.76  E-value=5.5e-18  Score=121.56  Aligned_cols=92  Identities=78%  Similarity=1.208  Sum_probs=81.8

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +.++|++|+|++.++++|++.+.+++.+++.+.++++.++++++|+||||||||++++++++.....++.+...++...+
T Consensus       178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~  257 (438)
T PTZ00361        178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY  257 (438)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence            34799999999999999999999999999999999999999999999999999999999999999888888888877777


Q ss_pred             cCchHHHHHHcc
Q psy16321         84 LGDGPKLVRVAL   95 (102)
Q Consensus        84 ~~~~~~~~~~~~   95 (102)
                      .++.+...+..|
T Consensus       258 ~Ge~~~~vr~lF  269 (438)
T PTZ00361        258 LGDGPKLVRELF  269 (438)
T ss_pred             cchHHHHHHHHH
Confidence            777665544444

>KOG0652|consensus

Probab=99.74  E-value=5.5e-18  Score=114.55  Aligned_cols=96  Identities=53%  Similarity=0.921  Sum_probs=88.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +...|.+|||++.|++++.+.+.+|..|++.|+++++.++++++++||||+|||.++|+.+..-+.++..+.+..++..+
T Consensus       166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf  245 (424)
T KOG0652|consen  166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF  245 (424)
T ss_pred             CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhh
Confidence            46789999999999999999999999999999999999999999999999999999999999888888888888888889


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      +++..+..|-+|..+.
T Consensus       246 IGdGAkLVRDAFaLAK  261 (424)
T KOG0652|consen  246 IGDGAKLVRDAFALAK  261 (424)
T ss_pred             hcchHHHHHHHHHHhh
Confidence            9988888887776543

>KOG0737|consensus

Probab=99.72  E-value=1.1e-17  Score=116.38  Aligned_cols=94  Identities=40%  Similarity=0.729  Sum_probs=85.4

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      .++|++|||++.+++++++.+.+|+.+|++|..-. +.+.++++++||||||||.++++++......++.+..+.+.++|
T Consensus        88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW  167 (386)
T KOG0737|consen   88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW  167 (386)
T ss_pred             eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence            36899999999999999999999999999996433 56889999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchh
Q psy16321         84 LGDGPKLVRVALVPE   98 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q   98 (102)
                      .++.++..+..|.++
T Consensus       168 fgE~eKlv~AvFslA  182 (386)
T KOG0737|consen  168 FGEAQKLVKAVFSLA  182 (386)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999998888777654

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.72  E-value=4e-17  Score=115.92  Aligned_cols=91  Identities=63%  Similarity=1.079  Sum_probs=81.1

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      -.+|++|+|+++++++|++.+.+++.+++.+..+++.++.+++|+||||||||+++++++......++.+...++...+.
T Consensus       127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~  206 (389)
T PRK03992        127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFI  206 (389)
T ss_pred             CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhc
Confidence            46899999999999999999999999999999999999999999999999999999999999988888888888877777


Q ss_pred             CchHHHHHHcc
Q psy16321         85 GDGPKLVRVAL   95 (102)
Q Consensus        85 ~~~~~~~~~~~   95 (102)
                      ++.+...+..|
T Consensus       207 g~~~~~i~~~f  217 (389)
T PRK03992        207 GEGARLVRELF  217 (389)
T ss_pred             cchHHHHHHHH
Confidence            76665554433

>KOG0729|consensus

Probab=99.72  E-value=3.5e-17  Score=110.96  Aligned_cols=95  Identities=54%  Similarity=0.926  Sum_probs=87.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|.++||-.+|++.|++.++.|+.||+.|.++++.++++++++||||+|||.++|++|.--+..++.+.+++++.++
T Consensus       172 pdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqky  251 (435)
T KOG0729|consen  172 PDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKY  251 (435)
T ss_pred             CCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             cCchHHHHHHccchh
Q psy16321         84 LGDGPKLVRVALVPE   98 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q   98 (102)
                      +++..+-.|-.|..+
T Consensus       252 vgegarmvrelf~ma  266 (435)
T KOG0729|consen  252 VGEGARMVRELFEMA  266 (435)
T ss_pred             hhhhHHHHHHHHHHh
Confidence            998887766666544

>KOG0739|consensus

Probab=99.70  E-value=4.6e-17  Score=111.54  Aligned_cols=95  Identities=37%  Similarity=0.647  Sum_probs=86.1

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-+.|+++.||+..++.|++.+.+|.+.|++|..-. .|.+.++|+||||+|||-|++++|.+.+.+++.|..++++++|
T Consensus       128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR-~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKW  206 (439)
T KOG0739|consen  128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKR-KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW  206 (439)
T ss_pred             CCCchhhhccchhHHHHHHhheeecccchhhhcCCC-CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHH
Confidence            457899999999999999999999999999988644 5688999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .+++++..+-.|..+.
T Consensus       207 mGESEkLVknLFemAR  222 (439)
T KOG0739|consen  207 MGESEKLVKNLFEMAR  222 (439)
T ss_pred             hccHHHHHHHHHHHHH
Confidence            9999988876665544

>KOG0731|consensus

Probab=99.70  E-value=6.4e-17  Score=121.11  Aligned_cols=93  Identities=43%  Similarity=0.698  Sum_probs=84.3

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG   85 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~   85 (102)
                      ++|+|+.|.++.+++|.|.+.+ +++|+.|.++++..+++++|+||||||||.|||++||+.+.+++.+++++++-.+.+
T Consensus       308 V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g  386 (774)
T KOG0731|consen  308 VKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG  386 (774)
T ss_pred             CccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence            6899999999999999998876 899999999999999999999999999999999999999999999999999888887


Q ss_pred             chHHHHHHccchhh
Q psy16321         86 DGPKLVRVALVPEV   99 (102)
Q Consensus        86 ~~~~~~~~~~~~q~   99 (102)
                      ....+.+-.|..+.
T Consensus       387 ~~asrvr~lf~~ar  400 (774)
T KOG0731|consen  387 VGASRVRDLFPLAR  400 (774)
T ss_pred             cchHHHHHHHHHhh
Confidence            77777666655444

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.70  E-value=8e-17  Score=117.26  Aligned_cols=92  Identities=50%  Similarity=0.920  Sum_probs=77.3

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc----------EEE
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT----------FLR   73 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~----------~~~   73 (102)
                      +-++|++|+|+++++++|++.+.+++.+++.+..+++.++.+++|+||||||||+++++++..+...          +..
T Consensus       177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~  256 (512)
T TIGR03689       177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN  256 (512)
T ss_pred             CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence            4578999999999999999999999999999999999999999999999999999999999976432          445


Q ss_pred             EccchhhhhccCchHHHHHHcc
Q psy16321         74 VVGSELIQKYLGDGPKLVRVAL   95 (102)
Q Consensus        74 i~~~~~~~~~~~~~~~~~~~~~   95 (102)
                      +...++..++.++.+...+..|
T Consensus       257 v~~~eLl~kyvGete~~ir~iF  278 (512)
T TIGR03689       257 IKGPELLNKYVGETERQIRLIF  278 (512)
T ss_pred             ccchhhcccccchHHHHHHHHH
Confidence            5556666677777766555443

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.69  E-value=1.3e-16  Score=120.55  Aligned_cols=94  Identities=49%  Similarity=0.868  Sum_probs=86.3

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++++|++++++.|++.+.+++.+++.+..+++.++.+++|+||||||||+++++++..+..+++.+...++..++
T Consensus       448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~  527 (733)
T TIGR01243       448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKW  527 (733)
T ss_pred             cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999998899


Q ss_pred             cCchHHHHHHccch
Q psy16321         84 LGDGPKLVRVALVP   97 (102)
Q Consensus        84 ~~~~~~~~~~~~~~   97 (102)
                      .++++...+..|..
T Consensus       528 vGese~~i~~~f~~  541 (733)
T TIGR01243       528 VGESEKAIREIFRK  541 (733)
T ss_pred             cCcHHHHHHHHHHH
Confidence            99888776665544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.4e-16  Score=115.81  Aligned_cols=96  Identities=46%  Similarity=0.816  Sum_probs=89.6

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +.++|++++|+++.++.+++.+.+++.+++.+...++.+..+++|+||||||||+|+++++...+.+++.+...++.+++
T Consensus       237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~  316 (494)
T COG0464         237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKW  316 (494)
T ss_pred             CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccc
Confidence            45789999999999999999999999999999998889999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .++++++.+..|..+.
T Consensus       317 vGesek~ir~~F~~A~  332 (494)
T COG0464         317 VGESEKNIRELFEKAR  332 (494)
T ss_pred             cchHHHHHHHHHHHHH
Confidence            9999999887776654

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.68  E-value=2.2e-16  Score=111.22  Aligned_cols=87  Identities=66%  Similarity=1.135  Sum_probs=76.5

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++|+|+++++++|++.+.+++.+++.+..+++.++.+++|+||||||||+++++++..+...+..+...++...+
T Consensus       117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~  196 (364)
T TIGR01242       117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY  196 (364)
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence            34689999999999999999999999999999999999999999999999999999999999998888888776666666


Q ss_pred             cCchHHH
Q psy16321         84 LGDGPKL   90 (102)
Q Consensus        84 ~~~~~~~   90 (102)
                      .+.....
T Consensus       197 ~g~~~~~  203 (364)
T TIGR01242       197 IGEGARL  203 (364)
T ss_pred             hhHHHHH
Confidence            5554443

Many proteins may score above the trusted cutoff because an internal

>KOG0735|consensus

Probab=99.68  E-value=1.5e-16  Score=118.11  Aligned_cols=94  Identities=33%  Similarity=0.578  Sum_probs=89.0

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG   85 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~   85 (102)
                      -.|++|||+.++++.+++.+++|-+++.+|.+..+....+++|+||||||||.|+.+++...+..++.+.+.++.++++|
T Consensus       664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG  743 (952)
T KOG0735|consen  664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG  743 (952)
T ss_pred             CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHccchhh
Q psy16321         86 DGPKLVRVALVPEV   99 (102)
Q Consensus        86 ~~~~~~~~~~~~q~   99 (102)
                      .+|...|..|..+.
T Consensus       744 aSEq~vR~lF~rA~  757 (952)
T KOG0735|consen  744 ASEQNVRDLFERAQ  757 (952)
T ss_pred             ccHHHHHHHHHHhh
Confidence            99999888876654

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.67  E-value=3.9e-17  Score=110.01  Aligned_cols=64  Identities=22%  Similarity=0.194  Sum_probs=55.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|++++|+||||||||||+|+|+|+++|..|.|..++.........+..++++|++|.+
T Consensus        22 s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~   85 (258)
T COG1120          22 SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSP   85 (258)
T ss_pred             eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCC
Confidence            4678999999999999999999999999999998887776655445567778888999999985

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.65  E-value=7.1e-16  Score=116.65  Aligned_cols=91  Identities=49%  Similarity=0.894  Sum_probs=80.2

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      -.+|++|+|++.+++.|++.+.+++.+++.+.++++.++++++|+||||||||+++++|++.+....+.+++.++...+.
T Consensus       174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~  253 (733)
T TIGR01243       174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYY  253 (733)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccc
Confidence            46899999999999999999999999999999999999999999999999999999999999988888888877777776


Q ss_pred             CchHHHHHHcc
Q psy16321         85 GDGPKLVRVAL   95 (102)
Q Consensus        85 ~~~~~~~~~~~   95 (102)
                      +..+.+.+..|
T Consensus       254 g~~~~~l~~lf  264 (733)
T TIGR01243       254 GESEERLREIF  264 (733)
T ss_pred             cHHHHHHHHHH
Confidence            66655444333

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.63  E-value=1.2e-16  Score=111.66  Aligned_cols=62  Identities=23%  Similarity=0.220  Sum_probs=51.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|.|||||||||++|+|||+..|+.|.|..++...  .+....++.+++|||++
T Consensus        25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i--~~lpp~kR~ig~VFQ~Y   86 (352)
T COG3842          25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDI--TDVPPEKRPIGMVFQSY   86 (352)
T ss_pred             eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEC--CCCChhhcccceeecCc
Confidence            577899999999999999999999999999999988776654422  23556678899999985

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.63  E-value=1.9e-16  Score=103.91  Aligned_cols=64  Identities=17%  Similarity=0.198  Sum_probs=52.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch--hhhhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE--LIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      ++++.+|+.++|+||||||||||+|||.++..++.|.|...+  +..+. .....|+++++|||++|
T Consensus        22 ~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~-~~~~~R~~vGmVFQ~fn   87 (240)
T COG1126          22 SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK-DILKLRRKVGMVFQQFN   87 (240)
T ss_pred             ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh-hHHHHHHhcCeeccccc
Confidence            467899999999999999999999999999999988776554  22222 44566778999999875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.61  E-value=2e-16  Score=110.08  Aligned_cols=63  Identities=22%  Similarity=0.233  Sum_probs=52.1

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      -++.+..|+++.|+|||||||||++|+|||+..++.|+|...+....  ......+.+++|||++
T Consensus        22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt--~l~P~~R~iamVFQ~y   84 (338)
T COG3839          22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVT--DLPPEKRGIAMVFQNY   84 (338)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC--CCChhHCCEEEEeCCc
Confidence            35778999999999999999999999999999999888876654222  2345667899999985

>KOG0651|consensus

Probab=99.60  E-value=2.4e-15  Score=103.28  Aligned_cols=93  Identities=51%  Similarity=0.897  Sum_probs=86.3

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG   85 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~   85 (102)
                      .+|+.++|+..|+-++++.+++++..++++.++++.++.+++|+||+|+|||.++++++.-+...++.+..+.+.+++.+
T Consensus       129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG  208 (388)
T KOG0651|consen  129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG  208 (388)
T ss_pred             cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHccchh
Q psy16321         86 DGPKLVRVALVPE   98 (102)
Q Consensus        86 ~~~~~~~~~~~~q   98 (102)
                      ++.+..|..|-.+
T Consensus       209 EsaRlIRemf~yA  221 (388)
T KOG0651|consen  209 ESARLIRDMFRYA  221 (388)
T ss_pred             cHHHHHHHHHHHH
Confidence            9887777655443

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.59  E-value=6.8e-16  Score=102.29  Aligned_cols=66  Identities=20%  Similarity=0.185  Sum_probs=50.2

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC----chHHHHHHccchhhhc
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG----DGPKLVRVALVPEVRN  101 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~q~~~  101 (102)
                      .++.+++|+.++|+||||||||||+++|+++..|+.+.+...........    ..-++.+++|+||+.+
T Consensus        24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n   93 (226)
T COG1136          24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN   93 (226)
T ss_pred             ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence            46789999999999999999999999999999999777554432111122    1234457999999865

>KOG0732|consensus

Probab=99.59  E-value=2.3e-15  Score=115.54  Aligned_cols=96  Identities=36%  Similarity=0.694  Sum_probs=85.3

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccch
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSE   78 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~   78 (102)
                      +.++|+++|||+.++.++++.+.+|+.++++|.++.+.++++++++||||+|||..+++++..+...     ++.-.+.+
T Consensus       260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD  339 (1080)
T KOG0732|consen  260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD  339 (1080)
T ss_pred             cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence            3679999999999999999999999999999999999999999999999999999999999987543     34445678


Q ss_pred             hhhhccCchHHHHHHccchhh
Q psy16321         79 LIQKYLGDGPKLVRVALVPEV   99 (102)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~q~   99 (102)
                      ..++|+++.++..+..|..+.
T Consensus       340 ~lskwvgEaERqlrllFeeA~  360 (1080)
T KOG0732|consen  340 CLSKWVGEAERQLRLLFEEAQ  360 (1080)
T ss_pred             hhccccCcHHHHHHHHHHHHh
Confidence            889999999998888776654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.59  E-value=5.7e-16  Score=106.03  Aligned_cols=64  Identities=22%  Similarity=0.232  Sum_probs=51.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++..|+.++|.|||||||||++|+|||+..|+.|.|..++... +......+.++++|+||++
T Consensus        22 ~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~Y   86 (345)
T COG1118          22 SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHY   86 (345)
T ss_pred             eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEech
Confidence            567889999999999999999999999999999988887665421 1112345567899999986

>KOG0734|consensus

Probab=99.58  E-value=6.3e-15  Score=107.07  Aligned_cols=94  Identities=39%  Similarity=0.629  Sum_probs=84.4

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      -++|+|+-|.++.++++++.+++ ++.|+-|.+++-.-+++++|+||||+|||.|+|++||+...+++...++++.-.++
T Consensus       300 nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V  378 (752)
T KOG0734|consen  300 NVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV  378 (752)
T ss_pred             ccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh
Confidence            46899999999999999999887 88999999999888899999999999999999999999999999999998877788


Q ss_pred             CchHHHHHHccchhh
Q psy16321         85 GDGPKLVRVALVPEV   99 (102)
Q Consensus        85 ~~~~~~~~~~~~~q~   99 (102)
                      +...+|.|-.|..+.
T Consensus       379 GvGArRVRdLF~aAk  393 (752)
T KOG0734|consen  379 GVGARRVRDLFAAAK  393 (752)
T ss_pred             cccHHHHHHHHHHHH
Confidence            888888877665544

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.57  E-value=1.2e-14  Score=105.99  Aligned_cols=90  Identities=40%  Similarity=0.710  Sum_probs=76.7

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      ..+|++++|++++++++++.+.+ +.+++.+.+++...+++++|+||||||||+++++|++....+++.++..++...+.
T Consensus        51 ~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~  129 (495)
T TIGR01241        51 KVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV  129 (495)
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHh
Confidence            56899999999999999998876 78889999988888899999999999999999999999988888888777766666


Q ss_pred             CchHHHHHHcc
Q psy16321         85 GDGPKLVRVAL   95 (102)
Q Consensus        85 ~~~~~~~~~~~   95 (102)
                      +..+.+.+..|
T Consensus       130 g~~~~~l~~~f  140 (495)
T TIGR01241       130 GVGASRVRDLF  140 (495)
T ss_pred             cccHHHHHHHH
Confidence            66555444433

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.56  E-value=5.6e-15  Score=97.06  Aligned_cols=75  Identities=21%  Similarity=0.232  Sum_probs=57.0

Q ss_pred             hhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEc--cchhhhhccCchHHHHHHccch
Q psy16321         27 LPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVV--GSELIQKYLGDGPKLVRVALVP   97 (102)
Q Consensus        27 ~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~--~~~~~~~~~~~~~~~~~~~~~~   97 (102)
                      +.+...+..+  ++.++++++.+|+|||||||||++|++.++....     .|+|.  +.++........+.|+++++||
T Consensus        15 ~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVF   94 (253)
T COG1117          15 LYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVF   94 (253)
T ss_pred             EEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeec
Confidence            3344444444  5678999999999999999999999999976543     34444  4566656666778899999999


Q ss_pred             hhhc
Q psy16321         98 EVRN  101 (102)
Q Consensus        98 q~~~  101 (102)
                      |.||
T Consensus        95 QkPn   98 (253)
T COG1117          95 QKPN   98 (253)
T ss_pred             cCCC
Confidence            9986

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.55  E-value=1.6e-15  Score=101.21  Aligned_cols=59  Identities=19%  Similarity=0.171  Sum_probs=46.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+|+|||+..|+.|.|...+...     ......++|+||++
T Consensus        23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-----~~p~~~~~~vFQ~~   81 (248)
T COG1116          23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-----TGPGPDIGYVFQED   81 (248)
T ss_pred             eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-----CCCCCCEEEEeccC
Confidence            567899999999999999999999999999999988876543211     11123568888875

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.54  E-value=3.6e-15  Score=98.95  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=52.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC---chHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~q~~~  101 (102)
                      ++.+++|+.++|+||||+|||||+|+|+|+.+++.+++...+.......   ....+++++|+||.+|
T Consensus        24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n   91 (258)
T COG3638          24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN   91 (258)
T ss_pred             eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence            5789999999999999999999999999999999888776653222222   3345678999999875

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.54  E-value=3e-15  Score=99.56  Aligned_cols=66  Identities=15%  Similarity=0.123  Sum_probs=52.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh-hhhccCchHHHHHHccchhhhcC
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL-IQKYLGDGPKLVRVALVPEVRNG  102 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~q~~~~  102 (102)
                      ++++.+|+.++|+|+||||||||+|+|+|+.++..|+|...+. ...........+.+.+|||++.+
T Consensus        27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~   93 (252)
T COG1124          27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS   93 (252)
T ss_pred             eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCcc
Confidence            5678999999999999999999999999999999888876652 22222233455668899999753

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.53  E-value=6.3e-14  Score=102.01  Aligned_cols=89  Identities=27%  Similarity=0.402  Sum_probs=74.1

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      ..+|++|||++.+++.+++....   ......++++..+++++|+||||||||+++++||+..+.+.+.++...+...+.
T Consensus       224 ~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v  300 (489)
T CHL00195        224 NEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV  300 (489)
T ss_pred             CCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence            46899999999999999875532   223446678889999999999999999999999999999999998888888888


Q ss_pred             CchHHHHHHccc
Q psy16321         85 GDGPKLVRVALV   96 (102)
Q Consensus        85 ~~~~~~~~~~~~   96 (102)
                      ++++.+.+..|.
T Consensus       301 Gese~~l~~~f~  312 (489)
T CHL00195        301 GESESRMRQMIR  312 (489)
T ss_pred             ChHHHHHHHHHH
Confidence            888877665554

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.53  E-value=6.7e-15  Score=98.88  Aligned_cols=63  Identities=19%  Similarity=0.162  Sum_probs=55.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV   99 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~   99 (102)
                      +++++.|+.++++|||||||||++|+|.++..|+.|.|..++.........+.|++++|+-|.
T Consensus        21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQq   83 (309)
T COG1125          21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ   83 (309)
T ss_pred             eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence            577899999999999999999999999999999988887665555566677888999999986

>KOG0740|consensus

Probab=99.52  E-value=3e-14  Score=101.51  Aligned_cols=91  Identities=41%  Similarity=0.723  Sum_probs=84.4

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      -+.|++++|+++.++.+.+.+.+|...++.|..+. .+.+.++++||+|+|||.|+++||.+....++.+..+.+.++|.
T Consensus       149 ~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~  227 (428)
T KOG0740|consen  149 NVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV  227 (428)
T ss_pred             cccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence            36899999999999999999999999999999987 56779999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHccc
Q psy16321         85 GDGPKLVRVALV   96 (102)
Q Consensus        85 ~~~~~~~~~~~~   96 (102)
                      |+.+...|..|-
T Consensus       228 Ge~eK~vralf~  239 (428)
T KOG0740|consen  228 GESEKLVRALFK  239 (428)
T ss_pred             ChHHHHHHHHHH
Confidence            999888777663

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.51  E-value=5e-15  Score=99.57  Aligned_cols=61  Identities=21%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||+|||||+|+|.|++.|..|++.......   .....+.+++||||..
T Consensus        24 ~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~---~~~~~~~~IgYVPQ~~   84 (254)
T COG1121          24 SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPV---RKRRKRLRIGYVPQKS   84 (254)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccc---cccccCCeEEEcCccc
Confidence            467899999999999999999999999999999988886543311   1112245799999964

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.51  E-value=9.8e-15  Score=95.66  Aligned_cols=64  Identities=23%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|.+..++...........+.+++|++|++
T Consensus        21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   84 (211)
T cd03225          21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNP   84 (211)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecCh
Confidence            4678899999999999999999999999999988887765432111112223445788999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.50  E-value=2.1e-14  Score=91.65  Aligned_cols=64  Identities=20%  Similarity=0.189  Sum_probs=54.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|.||||||||||+|++|.+..|+.|.+.+..-.....+..+.+.+++|+.|.+
T Consensus        23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p   86 (223)
T COG4619          23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP   86 (223)
T ss_pred             eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCc
Confidence            5778999999999999999999999999999999888766544334456667788999999976

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.50  E-value=1.7e-14  Score=94.90  Aligned_cols=64  Identities=17%  Similarity=0.090  Sum_probs=48.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++..|.+...+........   ...+..++|++|++
T Consensus        23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~   89 (216)
T TIGR00960        23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDH   89 (216)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCc
Confidence            56789999999999999999999999999999988877655321111111   12345789999875

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.49  E-value=1.4e-14  Score=96.35  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.+...+........   ...+..++|++|++
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~   86 (235)
T cd03261          20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSG   86 (235)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCc
Confidence            46789999999999999999999999999999988877654321111111   22345688999874

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.48  E-value=1.8e-14  Score=92.12  Aligned_cols=64  Identities=22%  Similarity=0.252  Sum_probs=48.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+.++..+.+..++...........+.+++|++|++
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   85 (173)
T cd03246          22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD   85 (173)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC
Confidence            4678899999999999999999999999999988777765432212222233455789999875

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.48  E-value=2e-14  Score=98.86  Aligned_cols=64  Identities=23%  Similarity=0.227  Sum_probs=51.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      ++.+.+|+.++|+||||||||||+|+|+|+..|+.|++...+..... ...+.+.+++|++|++.
T Consensus        25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~-~~~~~~~~igy~~~~~~   88 (293)
T COG1131          25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQEPS   88 (293)
T ss_pred             eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc-CHHHHHhheEEEccCCC
Confidence            56789999999999999999999999999999998887665432111 13456678999999863

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.48  E-value=1.8e-14  Score=94.83  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=47.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch----HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG----PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+...+.........    ..+.+++|++|++
T Consensus        24 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~   91 (218)
T cd03255          24 SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSF   91 (218)
T ss_pred             EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeecc
Confidence            467899999999999999999999999999999888876543221111111    1234688988874

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.48  E-value=1.9e-14  Score=95.38  Aligned_cols=64  Identities=20%  Similarity=0.158  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|++...+...........+.+++|++|++
T Consensus        27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   90 (225)
T PRK10247         27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTP   90 (225)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccc
Confidence            5678999999999999999999999999999888887765432111112223445788999874

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.48  E-value=2.1e-14  Score=92.87  Aligned_cols=65  Identities=18%  Similarity=0.083  Sum_probs=52.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh---ccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK---YLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~q~~~  101 (102)
                      ++.+++|+++.++||||+|||||+|.|.+...|+.|.+...+....   .....-.++++++|||+..
T Consensus        22 s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r   89 (223)
T COG2884          22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR   89 (223)
T ss_pred             eEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeecc
Confidence            4678999999999999999999999999999999888776544222   2223456778999999863

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.48  E-value=2.2e-14  Score=94.54  Aligned_cols=64  Identities=20%  Similarity=0.242  Sum_probs=49.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+..|.+...+.........+.+++++|++|++
T Consensus        24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   87 (221)
T cd03244          24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDP   87 (221)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCC
Confidence            5778999999999999999999999999999988887765443222223334456789999875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=1.2e-13  Score=101.91  Aligned_cols=95  Identities=38%  Similarity=0.672  Sum_probs=86.3

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      -++|+|+.|.++.++++.+.+.+ ++.|..|..++..-+++++++||||+|||.|+|+++|+.+.+++.+++++.+-.++
T Consensus       146 ~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV  224 (596)
T COG0465         146 KVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV  224 (596)
T ss_pred             CcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence            46899999999999999999876 78888999999888999999999999999999999999999999999999998899


Q ss_pred             CchHHHHHHccchhhh
Q psy16321         85 GDGPKLVRVALVPEVR  100 (102)
Q Consensus        85 ~~~~~~~~~~~~~q~~  100 (102)
                      +....+.|.-|..+..
T Consensus       225 GvGAsRVRdLF~qAkk  240 (596)
T COG0465         225 GVGASRVRDLFEQAKK  240 (596)
T ss_pred             CCCcHHHHHHHHHhhc
Confidence            9888888877766553

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.47  E-value=2.7e-14  Score=94.55  Aligned_cols=64  Identities=20%  Similarity=0.109  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh-----CccEEEEccchhhhhccC--chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT-----SATFLRVVGSELIQKYLG--DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~-----~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.     .+..|++...+.......  ....+.+++|++|++
T Consensus        20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   90 (227)
T cd03260          20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP   90 (227)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence            4678899999999999999999999999998     787777765432111111  223345688999875

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=2.2e-14  Score=97.66  Aligned_cols=64  Identities=20%  Similarity=0.088  Sum_probs=49.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+.........+.+.+++|++|++
T Consensus        25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   88 (274)
T PRK13647         25 SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDP   88 (274)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecCh
Confidence            4678999999999999999999999999999998887765543222122233445789999975

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.47  E-value=2.3e-14  Score=94.41  Aligned_cols=63  Identities=14%  Similarity=0.073  Sum_probs=47.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|++...+...... ..+.+.+++|++|++
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~   84 (220)
T cd03263          22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFD   84 (220)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcC
Confidence            467899999999999999999999999999999888776543211111 123445688999874

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.47  E-value=2.7e-14  Score=92.32  Aligned_cols=64  Identities=20%  Similarity=0.130  Sum_probs=48.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL--GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+.++..|.+...+......  .....+..++|++|++
T Consensus        12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   77 (190)
T TIGR01166        12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDP   77 (190)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecCh
Confidence            577899999999999999999999999999999888776543211111  1123345689999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.47  E-value=2.3e-14  Score=94.96  Aligned_cols=64  Identities=19%  Similarity=0.235  Sum_probs=48.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+...........+.+++|++|++
T Consensus        23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   86 (229)
T cd03254          23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDT   86 (229)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCc
Confidence            4678899999999999999999999999999988777765432212222233455688998874

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.47  E-value=2.2e-14  Score=93.76  Aligned_cols=61  Identities=20%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+....   ....+.+++|++|++
T Consensus        20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~---~~~~~~~i~~~~q~~   80 (205)
T cd03226          20 SLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIK---AKERRKSIGYVMQDV   80 (205)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhh---hHHhhcceEEEecCh
Confidence            4678899999999999999999999999999998888765432111   123345688999874

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.47  E-value=3e-14  Score=93.56  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=46.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+|..|++...+....     ..+.+++|++|++
T Consensus        19 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~   77 (213)
T cd03235          19 SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRR   77 (213)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEecccc
Confidence            5678999999999999999999999999999988887765432111     2345688988875

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.47  E-value=2.4e-14  Score=93.88  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=47.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|++...+....  .......+..++|++|++
T Consensus        20 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   85 (213)
T cd03262          20 DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQF   85 (213)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEeccc
Confidence            5678899999999999999999999999999988887765432111  011123345688999875

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.47  E-value=2.5e-14  Score=95.66  Aligned_cols=64  Identities=17%  Similarity=0.118  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+.++..|.+..++...........+.+++|++|++
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   84 (242)
T cd03295          21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQI   84 (242)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCc
Confidence            5678999999999999999999999999999988887765432111112223345688999874

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.47  E-value=2.5e-14  Score=95.70  Aligned_cols=64  Identities=16%  Similarity=0.114  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+...........+..++|++|++
T Consensus        23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~   86 (241)
T PRK14250         23 SVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQP   86 (241)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCc
Confidence            5678899999999999999999999999999988887765432111112223445688999874

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.47  E-value=3.2e-14  Score=94.80  Aligned_cols=64  Identities=20%  Similarity=0.197  Sum_probs=47.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC---chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+...+.......   ....+..++|++|++
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~   87 (241)
T cd03256          21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQF   87 (241)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccC
Confidence            5778999999999999999999999999999888777755432111111   122345688999874

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.47  E-value=2.5e-14  Score=97.62  Aligned_cols=64  Identities=11%  Similarity=0.061  Sum_probs=49.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|..|.+...+...........+.+++|++|++
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~   90 (279)
T PRK13650         27 SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNP   90 (279)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcCh
Confidence            5678999999999999999999999999999998887765543222222234456789999975

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.47  E-value=2.7e-14  Score=91.10  Aligned_cols=64  Identities=25%  Similarity=0.292  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+.++..|++...+...........+.+++|++|++
T Consensus        22 ~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~   85 (171)
T cd03228          22 SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP   85 (171)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc
Confidence            4678999999999999999999999999999988777765432211122223445688888874

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.47  E-value=3.4e-14  Score=93.77  Aligned_cols=63  Identities=19%  Similarity=0.095  Sum_probs=47.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+..... .....+.+++|++|++
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~   82 (220)
T cd03265          20 SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDL   82 (220)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCc
Confidence            46788999999999999999999999999999988877654321111 1123345688999875

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.47  E-value=3e-14  Score=94.67  Aligned_cols=64  Identities=19%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+|..|.+...+...........+..++|++|++
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   85 (234)
T cd03251          22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV   85 (234)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCC
Confidence            4678899999999999999999999999999988887765432111122223455688999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.46  E-value=2.8e-14  Score=95.04  Aligned_cols=64  Identities=20%  Similarity=0.181  Sum_probs=48.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++..|++...+...........+.+++|++|++
T Consensus        23 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   86 (238)
T cd03249          23 SLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP   86 (238)
T ss_pred             EEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCch
Confidence            5778999999999999999999999999999988777765442211122233345688998874

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.46  E-value=3e-14  Score=93.21  Aligned_cols=64  Identities=14%  Similarity=0.112  Sum_probs=49.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+..|.+...+.........+.+..++|++|++
T Consensus        28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   91 (207)
T cd03369          28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDP   91 (207)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCC
Confidence            4678899999999999999999999999999988887765543222222233455789999975

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=3.4e-14  Score=96.45  Aligned_cols=64  Identities=13%  Similarity=0.039  Sum_probs=48.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++..|.+...+...........+.+++|++|++
T Consensus        29 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   92 (269)
T PRK13648         29 SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP   92 (269)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeCh
Confidence            4678999999999999999999999999999988887765543211122223455688999875

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.46  E-value=2.7e-14  Score=91.28  Aligned_cols=63  Identities=21%  Similarity=0.133  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..+.+..++....... .+.+.+++|++|++
T Consensus        20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~   82 (173)
T cd03230          20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEP   82 (173)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCC
Confidence            5678999999999999999999999999999888887765432111111 23345688999875

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.46  E-value=2.4e-14  Score=100.76  Aligned_cols=62  Identities=21%  Similarity=0.230  Sum_probs=49.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..++.|.+..++....  .....++.++|++|++
T Consensus        24 sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~--~~~~~~r~ig~v~Q~~   85 (356)
T PRK11650         24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVN--ELEPADRDIAMVFQNY   85 (356)
T ss_pred             eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC--CCCHHHCCEEEEeCCc
Confidence            5778999999999999999999999999999999888765543211  1223446799999985

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.46  E-value=4.1e-14  Score=97.55  Aligned_cols=63  Identities=14%  Similarity=0.117  Sum_probs=48.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||||||||+++|+|+++|+.|.+...+..... .....+.+++|++|++
T Consensus        13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~   75 (302)
T TIGR01188        13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYA   75 (302)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCC
Confidence            57789999999999999999999999999999998877654321111 1123455689999875

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.46  E-value=3.8e-14  Score=94.19  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+...+.........   ..+..++|++|++
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~   91 (233)
T cd03258          25 SLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHF   91 (233)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCc
Confidence            577899999999999999999999999999999877776543211111111   2245688999875

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00176 ftsH cell division protein; Validated

Probab=99.46  E-value=3e-13  Score=101.09  Aligned_cols=84  Identities=39%  Similarity=0.724  Sum_probs=71.0

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      -.+|++++|+++.++++++.+.+ ++.++.+..++...+++++|+||||||||++++++++....+++.+.+.++...+.
T Consensus       179 ~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~  257 (638)
T CHL00176        179 GITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFV  257 (638)
T ss_pred             CCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhh
Confidence            35899999999999999998766 77888888888888899999999999999999999999988888887776655544


Q ss_pred             CchHH
Q psy16321         85 GDGPK   89 (102)
Q Consensus        85 ~~~~~   89 (102)
                      +....
T Consensus       258 g~~~~  262 (638)
T CHL00176        258 GVGAA  262 (638)
T ss_pred             hhhHH
Confidence            44333

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.46  E-value=2.7e-14  Score=94.15  Aligned_cols=64  Identities=22%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|.+...+.......... .+.+++|++|++
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   84 (222)
T cd03224          20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGR   84 (222)
T ss_pred             eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEecccc
Confidence            4678899999999999999999999999999988877765432111111112 234588999875

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.46  E-value=3.1e-14  Score=94.41  Aligned_cols=64  Identities=19%  Similarity=0.126  Sum_probs=48.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|++...+.......... .+.+++|++|++
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   84 (230)
T TIGR03410        20 SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGR   84 (230)
T ss_pred             eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence            5678899999999999999999999999999998887765543211111112 234688999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.46  E-value=5.1e-14  Score=94.02  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|.+...+........   ...+.+++|++|++
T Consensus        22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~   88 (243)
T TIGR02315        22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHY   88 (243)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCC
Confidence            56789999999999999999999999999999887777654321111111   12345689999874

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.46  E-value=5.3e-14  Score=92.94  Aligned_cols=64  Identities=16%  Similarity=0.143  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++..|++...+........   ...+..++|++|++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~   88 (222)
T PRK10908         22 TFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDH   88 (222)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCc
Confidence            46789999999999999999999999999999988887654321111111   12345688999875

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.45  E-value=3.1e-14  Score=94.14  Aligned_cols=64  Identities=20%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|..|++...+........   ...+..++|++|++
T Consensus        25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~   91 (228)
T cd03257          25 SFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP   91 (228)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCc
Confidence            56789999999999999999999999999999888877654321111111   22345688998875

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.45  E-value=3.4e-14  Score=94.60  Aligned_cols=64  Identities=22%  Similarity=0.155  Sum_probs=48.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|++...+...........+.+++|++|++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   85 (237)
T cd03252          22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQEN   85 (237)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCc
Confidence            5678999999999999999999999999999988777765432211122223445688999874

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.45  E-value=4.8e-14  Score=92.46  Aligned_cols=62  Identities=21%  Similarity=0.163  Sum_probs=47.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+| .++|+||||||||||+++|+|++++..|++...+....... .+.+.+++|++|++
T Consensus        20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~   81 (211)
T cd03264          20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEF   81 (211)
T ss_pred             eEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCC
Confidence            4678888 99999999999999999999999998888765442211111 33456788999875

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.45  E-value=4e-14  Score=94.18  Aligned_cols=64  Identities=16%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+...........+..++|++|++
T Consensus        21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~   84 (236)
T cd03253          21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDT   84 (236)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCC
Confidence            5678899999999999999999999999999988887765432212222333445688998874

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.45  E-value=3.5e-14  Score=103.93  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=53.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|..|++..++...... ..+.+..++|++|++
T Consensus       355 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~  417 (529)
T TIGR02868       355 SLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDA  417 (529)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCc
Confidence            366889999999999999999999999999999988887665544445 667778899999986

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.45  E-value=2.9e-14  Score=94.84  Aligned_cols=64  Identities=19%  Similarity=0.122  Sum_probs=46.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+...+.......... .+.+++|++|++
T Consensus        20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   84 (236)
T cd03219          20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIP   84 (236)
T ss_pred             eEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEeccc
Confidence            5778999999999999999999999999999988887765432111111112 123478888874

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.45  E-value=3.8e-14  Score=90.94  Aligned_cols=64  Identities=22%  Similarity=0.215  Sum_probs=47.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC--chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG--DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||+|||||+++|+|++++..+++...+.......  ....+..++|++|++
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   85 (178)
T cd03229          20 SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDF   85 (178)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCC
Confidence            5678999999999999999999999999999988887765432111111  123345688888874

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.45  E-value=3.1e-14  Score=100.07  Aligned_cols=62  Identities=23%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+++.|.+..++....  .....+++++|++|++
T Consensus        26 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~--~~~~~~r~ig~vfQ~~   87 (351)
T PRK11432         26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVT--HRSIQQRDICMVFQSY   87 (351)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECC--CCCHHHCCEEEEeCCc
Confidence            5778999999999999999999999999999999888765543211  2234456799999985

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.45  E-value=4.6e-14  Score=92.48  Aligned_cols=60  Identities=20%  Similarity=0.185  Sum_probs=46.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|++...+....   . ..+.+++|++|++
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~---~-~~~~~i~~~~q~~   79 (210)
T cd03269          20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLD---I-AARNRIGYLPEER   79 (210)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchh---H-HHHccEEEeccCC
Confidence            5778999999999999999999999999999998888765432111   1 2344678888874

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.45  E-value=4.1e-14  Score=93.26  Aligned_cols=64  Identities=22%  Similarity=0.203  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|++...+...........+..++|++|++
T Consensus        24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   87 (220)
T cd03245          24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDV   87 (220)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCC
Confidence            4678999999999999999999999999999888777755432111112223345688999875

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.45  E-value=5.1e-14  Score=92.13  Aligned_cols=62  Identities=18%  Similarity=0.102  Sum_probs=48.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|++...+......  ...+.+++|++|++
T Consensus        20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~   81 (208)
T cd03268          20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAP   81 (208)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCC
Confidence            467889999999999999999999999999998888876654321111  23345688999875

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.45  E-value=3.7e-14  Score=90.97  Aligned_cols=63  Identities=13%  Similarity=0.181  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|.||||||||||+++|+|+.++..+++..++...... ....+..++|++|++
T Consensus        22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~   84 (178)
T cd03247          22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRP   84 (178)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCC
Confidence            577899999999999999999999999999998877775543211111 223445688999875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.45  E-value=5e-14  Score=92.42  Aligned_cols=64  Identities=20%  Similarity=0.121  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC---chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG---DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++..|++...+.......   ....+..++|++|++
T Consensus        21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~   87 (214)
T cd03292          21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDF   87 (214)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCc
Confidence            4678899999999999999999999999999998887765432111111   112345688999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.45  E-value=4.6e-14  Score=106.34  Aligned_cols=68  Identities=19%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             HHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         33 EYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        33 ~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ....+  +++++|+.++|+|+||||||||+|.+.|++.|..|+|..++......+....|+.+++|+|++
T Consensus       487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~  556 (709)
T COG2274         487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDP  556 (709)
T ss_pred             chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccc
Confidence            34443  668999999999999999999999999999999999988877767778888889999999985

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.45  E-value=4.9e-14  Score=95.48  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|.+...+...........+.+++|++|++
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   90 (265)
T PRK10253         27 TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNA   90 (265)
T ss_pred             ceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccC
Confidence            5678899999999999999999999999999988777765432111122223345689999875

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.45  E-value=5.7e-14  Score=92.96  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|++...+...........+..++|++|++
T Consensus        34 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   97 (226)
T cd03248          34 SFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEP   97 (226)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEeccc
Confidence            4678999999999999999999999999999988887765432211122223345688888874

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.45  E-value=4.9e-14  Score=92.52  Aligned_cols=64  Identities=22%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|++...+........   ...+..++|++|++
T Consensus        22 s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~   88 (214)
T TIGR02673        22 SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDF   88 (214)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecCh
Confidence            56789999999999999999999999999998888877654321111111   12345688998874

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.45  E-value=1.5e-14  Score=93.25  Aligned_cols=75  Identities=17%  Similarity=0.237  Sum_probs=56.2

Q ss_pred             hhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321         25 VELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        25 ~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      +.+.+.+...-.++.++.++.++|+||||+|||||++.|||+..|..+.+..++....  ......+-+.++||+.|
T Consensus         7 V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t--~~~P~~RPVSmlFQEnN   81 (231)
T COG3840           7 VRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHT--ASPPAERPVSMLFQENN   81 (231)
T ss_pred             eEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecC--cCCcccCChhhhhhccc
Confidence            4555566555567789999999999999999999999999999999888776654221  22233445778888754

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.45  E-value=2.8e-14  Score=95.41  Aligned_cols=65  Identities=25%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh-ccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~q~~~  101 (102)
                      ++.+.+|+.++|+||||||||||++.++|++.|..+.+...+.... .....+.+++++||||++.
T Consensus        24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd   89 (235)
T COG1122          24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPD   89 (235)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcc
Confidence            5678999999999999999999999999999999888755443222 1334566778999999975

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=4.3e-14  Score=96.50  Aligned_cols=64  Identities=16%  Similarity=0.075  Sum_probs=49.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||+|||||+++|+|+.+|..|.+...+...........+.+++|++|++
T Consensus        27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~   90 (279)
T PRK13635         27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP   90 (279)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence            4678999999999999999999999999999999887765543222122223455789999875

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.44  E-value=5e-14  Score=92.72  Aligned_cols=63  Identities=19%  Similarity=0.168  Sum_probs=47.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|++...+..... .....+..++|++|++
T Consensus        25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~   87 (218)
T cd03266          25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDST   87 (218)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCc
Confidence            46788999999999999999999999999999888877654321111 1123345788999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.44  E-value=4.9e-14  Score=97.42  Aligned_cols=63  Identities=19%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|++.|+.|.+...+..... .....+.+++|++|++
T Consensus        27 sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~-~~~~~~~~ig~v~q~~   89 (306)
T PRK13537         27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS-RARHARQRVGVVPQFD   89 (306)
T ss_pred             eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEeccc-chHHHHhcEEEEeccC
Confidence            57788999999999999999999999999999998877654432111 1123456799999985

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.44  E-value=4e-14  Score=99.56  Aligned_cols=62  Identities=23%  Similarity=0.202  Sum_probs=49.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+..|+.|++...+....  .....++.++|+||++
T Consensus        24 s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~--~~~~~~r~ig~v~Q~~   85 (353)
T TIGR03265        24 SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQKRDYGIVFQSY   85 (353)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECC--CCCHHHCCEEEEeCCc
Confidence            5778899999999999999999999999999999888765543211  1223456799999985

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=4.1e-14  Score=96.15  Aligned_cols=64  Identities=11%  Similarity=0.089  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|++..++...........+.+++|++|++
T Consensus        29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~   92 (271)
T PRK13632         29 SFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNP   92 (271)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCH
Confidence            4678899999999999999999999999999988887765443211112223445688999875

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.44  E-value=3.6e-14  Score=99.47  Aligned_cols=64  Identities=14%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+.+|+.|.+...+.........   ..+++++|+||++
T Consensus        25 sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~   91 (343)
T TIGR02314        25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHF   91 (343)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCc
Confidence            567899999999999999999999999999999988876554321111111   2345699999985

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=5.3e-14  Score=95.32  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=47.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+...+...........+..++|++|++
T Consensus        31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   94 (265)
T PRK10575         31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQL   94 (265)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCC
Confidence            5678899999999999999999999999999888777765432111122233345688998874

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.44  E-value=5.5e-14  Score=96.44  Aligned_cols=66  Identities=15%  Similarity=0.050  Sum_probs=53.2

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch--hh-hhccCchHHHHHHccchhhhc
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE--LI-QKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~--~~-~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      .++.+++|++++++|.||+|||||+|+|.++..|+.|.+..++  +. ....+....|++++++||++|
T Consensus        25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn   93 (339)
T COG1135          25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN   93 (339)
T ss_pred             ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence            3678999999999999999999999999999999988776554  22 122344566778999999875

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.44  E-value=5.1e-14  Score=92.46  Aligned_cols=62  Identities=19%  Similarity=0.210  Sum_probs=46.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+|..|++...+.....  ....+.+++|++|++
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--~~~~~~~i~~v~q~~   81 (213)
T cd03259          20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTG--VPPERRNIGMVFQDY   81 (213)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCc--CchhhccEEEEcCch
Confidence            56789999999999999999999999999999888877654321111  112234688888874

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=6.5e-14  Score=94.30  Aligned_cols=64  Identities=25%  Similarity=0.272  Sum_probs=47.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+...+...........+..++|++|++
T Consensus        22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   85 (255)
T PRK11231         22 SLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHH   85 (255)
T ss_pred             eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccC
Confidence            4678899999999999999999999999999888777765432111112223345688998874

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.44  E-value=2.2e-14  Score=88.02  Aligned_cols=64  Identities=25%  Similarity=0.262  Sum_probs=49.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|...+..+.+..++...........+..++|++|+.
T Consensus         5 ~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~   68 (137)
T PF00005_consen    5 SLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDP   68 (137)
T ss_dssp             EEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH
T ss_pred             EEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccc
Confidence            4667899999999999999999999999999998888765543322223344556788888873

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.44  E-value=4.8e-14  Score=95.66  Aligned_cols=64  Identities=16%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+...........+.+++|++|++
T Consensus        33 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   96 (267)
T PRK15112         33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP   96 (267)
T ss_pred             eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCc
Confidence            5778999999999999999999999999999998887765432111111112234588888874

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.44  E-value=5.4e-14  Score=93.33  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=46.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+.......... .+..++|++|++
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   84 (232)
T cd03218          20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEA   84 (232)
T ss_pred             eeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCc
Confidence            4678899999999999999999999999999988887765432111111112 223588888874

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.43  E-value=1.2e-13  Score=90.89  Aligned_cols=75  Identities=19%  Similarity=0.260  Sum_probs=56.2

Q ss_pred             hhhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         26 ELPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        26 ~~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .+.+..+.+..  ++++.+|+..+|+||||+|||||+++|+|++.|+.+++...+.....+...+..++.+..+|+.
T Consensus         8 s~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s   84 (259)
T COG4559           8 SYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNS   84 (259)
T ss_pred             EEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCc
Confidence            34444445544  4568899999999999999999999999999999888877765444445555555666777754

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.43  E-value=6.7e-14  Score=92.28  Aligned_cols=64  Identities=16%  Similarity=0.165  Sum_probs=47.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH---H-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP---K-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+..........   . +.+++|++|++
T Consensus        25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~   92 (221)
T TIGR02211        25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFH   92 (221)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccc
Confidence            4778999999999999999999999999999998887765432111111111   1 24588999874

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.43  E-value=5.9e-14  Score=94.79  Aligned_cols=64  Identities=22%  Similarity=0.270  Sum_probs=47.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||||||||+++|+|+.++..|++...+...........+..++|++|++
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   85 (258)
T PRK13548         22 SLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHS   85 (258)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCC
Confidence            4678899999999999999999999999999988777765432111112223345688998874

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.43  E-value=8.4e-14  Score=89.51  Aligned_cols=62  Identities=23%  Similarity=0.258  Sum_probs=45.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPE   98 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q   98 (102)
                      ++.+.+|+.++|.||||||||||+++|+|+.++..|.+...+...........+..++|++|
T Consensus        19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q   80 (180)
T cd03214          19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ   80 (180)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence            56789999999999999999999999999999988877654321111122233446777775

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=5.8e-14  Score=93.39  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH---H-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP---K-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+...+..........   . +.+++|++|++
T Consensus        29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~   96 (233)
T PRK11629         29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFH   96 (233)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCc
Confidence            5678999999999999999999999999999998888765543211111111   1 23588999874

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.43  E-value=4.6e-14  Score=95.98  Aligned_cols=76  Identities=21%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             hhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh--hh--hccCchHHHHHHccchhhhc
Q psy16321         26 ELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL--IQ--KYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        26 ~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~--~~--~~~~~~~~~~~~~~~~q~~~  101 (102)
                      ...+....+-.++.++...+++|+|+||+|||||+++|+|+.+|+.+.|..++.  ..  +.......+++++||||+.+
T Consensus         7 ~~~lG~~~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR   86 (352)
T COG4148           7 RQRLGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR   86 (352)
T ss_pred             hhhcCceEEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc
Confidence            344455555566777766899999999999999999999999999877765543  22  33345667789999999864

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=7.2e-14  Score=95.27  Aligned_cols=64  Identities=17%  Similarity=0.023  Sum_probs=48.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||+|||||+++|+|+..|..|.+...+...........+.+++|++|++
T Consensus        24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   87 (277)
T PRK13652         24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNP   87 (277)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCc
Confidence            4678999999999999999999999999999999888765443211112233445688999875

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.43  E-value=5e-14  Score=99.76  Aligned_cols=62  Identities=19%  Similarity=0.155  Sum_probs=49.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|.|...+....  .....+++++|+||++
T Consensus        34 sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~--~~~~~~r~ig~vfQ~~   95 (375)
T PRK09452         34 DLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT--HVPAENRHVNTVFQSY   95 (375)
T ss_pred             EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC--CCCHHHCCEEEEecCc
Confidence            5778999999999999999999999999999998887765543211  2233456799999985

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.43  E-value=8.9e-14  Score=102.75  Aligned_cols=64  Identities=20%  Similarity=0.131  Sum_probs=54.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|..|++..++...........+..++|++|++
T Consensus       363 ~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~  426 (582)
T PRK11176        363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV  426 (582)
T ss_pred             eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCc
Confidence            4568899999999999999999999999999999888877665444555566777899999985

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.43  E-value=6.3e-14  Score=96.65  Aligned_cols=63  Identities=19%  Similarity=0.194  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..|..|.+...+..... .....+.+++|++|++
T Consensus        24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~v~q~~   86 (303)
T TIGR01288        24 SFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFD   86 (303)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-cHHHHhhcEEEEeccc
Confidence            46789999999999999999999999999999988887654321111 1123455689999875

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.43  E-value=5.1e-14  Score=100.45  Aligned_cols=64  Identities=28%  Similarity=0.286  Sum_probs=49.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|.+.+|++++|+||||||||||+|+|+|+++|..|.+...+.........+.+++++|++|++
T Consensus        23 s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~   86 (402)
T PRK09536         23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDT   86 (402)
T ss_pred             EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCC
Confidence            4678999999999999999999999999999998887765543222222334456789999875

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.43  E-value=6.9e-14  Score=94.25  Aligned_cols=64  Identities=25%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|++++..|++...+...........+..++|++|++
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~   84 (256)
T TIGR03873        21 DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS   84 (256)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccC
Confidence            4678899999999999999999999999999988777765432211122223344688988875

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.43  E-value=7.4e-14  Score=92.52  Aligned_cols=64  Identities=19%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH---H-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP---K-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~---~-~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.+...+..........   . +.+++|++|++
T Consensus        30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~   97 (228)
T PRK10584         30 ELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSF   97 (228)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEccc
Confidence            5778999999999999999999999999999998887765432111111111   1 23588888874

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.43  E-value=3e-14  Score=96.06  Aligned_cols=64  Identities=17%  Similarity=0.119  Sum_probs=47.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh-----hhccCchH----HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI-----QKYLGDGP----KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~-----~~~~~~~~----~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|.||||||||||+++|+|+++|..|++...+..     ........    .+..++|++|++
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~   98 (258)
T PRK11701         26 SFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHP   98 (258)
T ss_pred             eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeCc
Confidence            56789999999999999999999999999999988877655431     11111111    123588999875

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=6.2e-14  Score=98.23  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=48.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|++...+.........   ..+.+++|++|++
T Consensus        25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~   91 (343)
T PRK11153         25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHF   91 (343)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCC
Confidence            577899999999999999999999999999999888876554321111111   2245689999875

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=9e-14  Score=93.28  Aligned_cols=64  Identities=19%  Similarity=0.104  Sum_probs=46.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+     ..|++...+...........+.+++|++|++
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~   91 (250)
T PRK14247         23 NLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIP   91 (250)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccC
Confidence            467889999999999999999999999999864     4677654432111112233445688999875

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.42  E-value=6.9e-14  Score=91.27  Aligned_cols=64  Identities=14%  Similarity=0.061  Sum_probs=47.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc----hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD----GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|++...+........    ...+++++|++|++
T Consensus        18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~   85 (206)
T TIGR03608        18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNF   85 (206)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecch
Confidence            56788999999999999999999999999999988877654332111111    12334688888874

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.42  E-value=9.2e-14  Score=92.60  Aligned_cols=63  Identities=21%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+|..|.+...+....... ......++|++|++
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~-~~~~~~i~~~~q~~   83 (236)
T TIGR03864        21 SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAP-RAALARLGVVFQQP   83 (236)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCC-hhhhhhEEEeCCCC
Confidence            4678899999999999999999999999999998887765432111111 12234688998874

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=6.6e-14  Score=95.94  Aligned_cols=64  Identities=19%  Similarity=0.106  Sum_probs=49.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL--GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.|..|.+...+......  .....+.+++|++|++
T Consensus        27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~   92 (287)
T PRK13637         27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP   92 (287)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCc
Confidence            467899999999999999999999999999999888776554321111  1123456789999975

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=7.6e-14  Score=95.55  Aligned_cols=64  Identities=17%  Similarity=0.147  Sum_probs=49.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc----cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY----LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..+..|.|...+.....    ......+.+++|++|++
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~   94 (286)
T PRK13646         27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFP   94 (286)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecCh
Confidence            46789999999999999999999999999999988877655432111    11124456799999975

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.42  E-value=1.2e-13  Score=90.11  Aligned_cols=63  Identities=17%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|++...+..... .....+.+++|++|++
T Consensus        21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~   83 (200)
T PRK13540         21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRS   83 (200)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEecccc
Confidence            46788999999999999999999999999999988877654321111 1123345688888764

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.42  E-value=5.7e-14  Score=99.09  Aligned_cols=64  Identities=11%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHH----HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK----LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~q~~  100 (102)
                      +|++.+|+.++|+||||||||||+++|+|+..|..|++...+.........+.    ++.++|++|++
T Consensus        13 s~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~   80 (363)
T TIGR01186        13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF   80 (363)
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence            57789999999999999999999999999999998877655432121222222    44689999874

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.42  E-value=7e-14  Score=97.92  Aligned_cols=63  Identities=19%  Similarity=0.251  Sum_probs=48.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|++.+|++++|+||||||||||+++|+|++.|+.|.+...+...... ..+.+.+++|++|++
T Consensus        61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig~v~q~~  123 (340)
T PRK13536         61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR-ARLARARIGVVPQFD  123 (340)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc-hHHHhccEEEEeCCc
Confidence            467899999999999999999999999999999988776544321111 123456789999874

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=6.7e-14  Score=99.20  Aligned_cols=62  Identities=16%  Similarity=0.128  Sum_probs=49.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+..++.|.+...+....  .....++.++|+||++
T Consensus        39 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~--~~~~~~r~ig~vfQ~~  100 (377)
T PRK11607         39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMFQSY  100 (377)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC--CCCHHHCCEEEEeCCC
Confidence            5778899999999999999999999999999999887765543211  1234456799999985

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=7.9e-14  Score=93.10  Aligned_cols=64  Identities=17%  Similarity=0.133  Sum_probs=47.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+.......... .+..++|++|++
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   87 (241)
T PRK10895         23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEA   87 (241)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence            5678999999999999999999999999999988777765432111111112 234688998875

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.42  E-value=6e-14  Score=90.31  Aligned_cols=64  Identities=20%  Similarity=0.144  Sum_probs=47.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|++++..|++...+....... ....+.+++|++|++
T Consensus        20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   84 (182)
T cd03215          20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDR   84 (182)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCc
Confidence            5678999999999999999999999999999998887765542211111 122344688999874

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.42  E-value=1.2e-13  Score=92.00  Aligned_cols=71  Identities=10%  Similarity=0.079  Sum_probs=52.8

Q ss_pred             CChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         30 THPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        30 ~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ..+..+.  ++++.+|++++|+||||||||||+|+|.|++.|+.|+|...........+   .+.+++++++||..
T Consensus        19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g   94 (263)
T COG1127          19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG   94 (263)
T ss_pred             CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc
Confidence            3444444  46789999999999999999999999999999998777654332222222   24456799999973

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.42  E-value=7.6e-14  Score=104.93  Aligned_cols=64  Identities=19%  Similarity=0.162  Sum_probs=54.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|++.|..|.+..++...........+.+++|++|++
T Consensus       473 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~  536 (686)
T TIGR03797       473 SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNG  536 (686)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCC
Confidence            3668899999999999999999999999999999888877665445556667778899999986

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.42  E-value=9.5e-14  Score=104.70  Aligned_cols=64  Identities=22%  Similarity=0.219  Sum_probs=55.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|.+..++.........+.+.+++|++|++
T Consensus       499 sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~  562 (710)
T TIGR03796       499 SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDI  562 (710)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCC
Confidence            4568899999999999999999999999999999888877665545566667788899999986

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.42  E-value=7.1e-14  Score=93.30  Aligned_cols=62  Identities=21%  Similarity=0.175  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+...+.......  ..+.+++|++|++
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~   83 (239)
T cd03296          22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP--VQERNVGFVFQHY   83 (239)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC--ccccceEEEecCC
Confidence            4678899999999999999999999999999988887765432111111  1234578888874

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.42  E-value=9.4e-14  Score=94.08  Aligned_cols=64  Identities=22%  Similarity=0.100  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|++...+.........   ..+..++|++|++
T Consensus        31 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~   97 (265)
T TIGR02769        31 SLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDS   97 (265)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecCh
Confidence            467899999999999999999999999999999888776554221111111   1234689999874

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.42  E-value=1e-13  Score=95.62  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=48.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||||||||+++|+|+..|+.|.+...+..... .....+.+++|++|++
T Consensus        22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~   84 (301)
T TIGR03522        22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHN   84 (301)
T ss_pred             EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCC
Confidence            46789999999999999999999999999999998887654421111 1223455789999875

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.41  E-value=6.6e-14  Score=98.48  Aligned_cols=62  Identities=23%  Similarity=0.180  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++++.|.+...+....  .....+++++|++|++
T Consensus        22 sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~--~~~~~~r~i~~v~Q~~   83 (353)
T PRK10851         22 SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHARDRKVGFVFQHY   83 (353)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC--CCCHHHCCEEEEecCc
Confidence            5678899999999999999999999999999998887765432111  1123345789999975

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.41  E-value=9e-14  Score=91.14  Aligned_cols=64  Identities=17%  Similarity=0.165  Sum_probs=48.3

Q ss_pred             HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ..++++.+|+.++|+||||||||||+++|+|++++..|.+...+.....  ....+..++|++|++
T Consensus        16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~--~~~~~~~i~~~~q~~   79 (211)
T cd03298          16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA--APPADRPVSMLFQEN   79 (211)
T ss_pred             ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCc--CCHhHccEEEEeccc
Confidence            4568889999999999999999999999999999887777654321111  112335688888875

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.41  E-value=1.4e-13  Score=92.31  Aligned_cols=64  Identities=19%  Similarity=0.139  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+..|.     .|++...+.....  ......+..++|++|++
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~   91 (247)
T TIGR00972        21 NLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKP   91 (247)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCc
Confidence            5778999999999999999999999999999876     7777654321111  11223345789999875

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.41  E-value=1.1e-13  Score=92.33  Aligned_cols=64  Identities=17%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL--GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|++++..|++...+......  .....+.+++|++|++
T Consensus        21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   86 (240)
T PRK09493         21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQF   86 (240)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEeccc
Confidence            567889999999999999999999999999998888776554321111  1123345688998874

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=1e-13  Score=94.45  Aligned_cols=64  Identities=19%  Similarity=0.080  Sum_probs=49.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||+|||||+++|+|++++..|.+...+....... ....+.+++|++|++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   86 (274)
T PRK13644         22 NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNP   86 (274)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEECh
Confidence            4678999999999999999999999999999998887766543221111 123445689999875

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.41  E-value=9.8e-14  Score=91.80  Aligned_cols=63  Identities=24%  Similarity=0.294  Sum_probs=49.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc--hhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS--ELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|++++|+||||+||||++++|+|+.++..+.|...  ++. ........+..++||||..
T Consensus        23 sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit-~~p~~~r~r~Gi~~VPegR   87 (237)
T COG0410          23 SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT-GLPPHERARLGIAYVPEGR   87 (237)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecC-CCCHHHHHhCCeEeCcccc
Confidence            57789999999999999999999999999999987777654  332 2223444556789999865

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.41  E-value=1.1e-13  Score=104.28  Aligned_cols=64  Identities=19%  Similarity=0.174  Sum_probs=55.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|++.|..|.|..++.........+.+.+++|++|++
T Consensus       494 sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~  557 (708)
T TIGR01193       494 SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP  557 (708)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCc
Confidence            4568899999999999999999999999999999888877665555566677788899999985

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=1.1e-13  Score=94.66  Aligned_cols=64  Identities=14%  Similarity=0.073  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE---EEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF---LRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.+..   |.+...+...........+.+++|++|++
T Consensus        27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~   93 (282)
T PRK13640         27 SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNP   93 (282)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECH
Confidence            46789999999999999999999999999998865   55544332111111223345789999875

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=9.5e-14  Score=95.27  Aligned_cols=64  Identities=20%  Similarity=0.166  Sum_probs=48.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh----ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK----YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..+..|.+...+....    .......+.+++|++|++
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~   94 (290)
T PRK13634         27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFP   94 (290)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCc
Confidence            4678999999999999999999999999999998887765543211    111223445789999975

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=9.3e-14  Score=92.57  Aligned_cols=64  Identities=30%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|++...+.......... .+..++|++|++
T Consensus        25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   89 (237)
T PRK11614         25 SLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGR   89 (237)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCc
Confidence            4678999999999999999999999999999998887765543211112122 344588888874

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=1.1e-13  Score=93.93  Aligned_cols=64  Identities=19%  Similarity=0.046  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+.....  ......+.+++|++|++
T Consensus        21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~   86 (271)
T PRK13638         21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDP   86 (271)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeCh
Confidence            46789999999999999999999999999999988877654332111  11123345689999875

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.41  E-value=7.1e-13  Score=89.71  Aligned_cols=91  Identities=34%  Similarity=0.548  Sum_probs=77.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-.++||+.|.++.+...+-..+| +.+|+.|.++   .++.++++||||+|||.+++++++..+.+.+.+....+...+
T Consensus       116 ~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh  191 (368)
T COG1223         116 SDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH  191 (368)
T ss_pred             ccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence            456899999999999887765544 7888887775   478999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchh
Q psy16321         84 LGDGPKLVRVALVPE   98 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q   98 (102)
                      +++..++.+..|..+
T Consensus       192 VGdgar~Ihely~rA  206 (368)
T COG1223         192 VGDGARRIHELYERA  206 (368)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            998887776665443

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.41  E-value=9e-14  Score=98.27  Aligned_cols=62  Identities=23%  Similarity=0.233  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..|+.|.+...+....  .....+++++|++|++
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~--~~~~~~~~i~~v~Q~~   84 (369)
T PRK11000         23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMN--DVPPAERGVGMVFQSY   84 (369)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC--CCCHhHCCEEEEeCCc
Confidence            5678899999999999999999999999999998887765432111  1122345689999875

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=1e-13  Score=95.05  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=49.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh----ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK----YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|+.|.+...+....    .....+.+.+++|++|++
T Consensus        26 sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~   93 (288)
T PRK13643         26 DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFP   93 (288)
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCc
Confidence            5678999999999999999999999999999998887765543211    111234456789999975

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.41  E-value=1.6e-13  Score=93.44  Aligned_cols=64  Identities=22%  Similarity=0.207  Sum_probs=46.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc--------EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT--------FLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~--------~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++.        .|.+...+...........+..++|++|++
T Consensus        21 sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~   92 (272)
T PRK13547         21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA   92 (272)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence            4678999999999999999999999999999876        666654432111112223334578888874

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=1.3e-13  Score=94.05  Aligned_cols=64  Identities=16%  Similarity=0.106  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc----cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY----LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.+...+.....    ......+.+++|++|++
T Consensus        27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~   94 (280)
T PRK13649         27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFP   94 (280)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeCh
Confidence            46788999999999999999999999999999988877654321111    11123445689999874

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.40  E-value=9.1e-14  Score=91.18  Aligned_cols=62  Identities=27%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|++...+.......  ..+.+++|++|++
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~--~~~~~i~~~~q~~   81 (213)
T cd03301          20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLP--PKDRDIAMVFQNY   81 (213)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC--cccceEEEEecCh
Confidence            4678999999999999999999999999999988887765432111111  1224688888874

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.40  E-value=1.1e-13  Score=97.63  Aligned_cols=62  Identities=24%  Similarity=0.210  Sum_probs=49.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE--EEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF--LRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..|+.  |.+...+....  .....+++++|++|++
T Consensus        25 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~--~~~~~~r~ig~vfQ~~   88 (362)
T TIGR03258        25 SLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLT--HAPPHKRGLALLFQNY   88 (362)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECC--CCCHHHCCEEEEECCc
Confidence            46788999999999999999999999999999988  88865543211  2223455789999985

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.40  E-value=1.7e-13  Score=92.09  Aligned_cols=64  Identities=17%  Similarity=0.051  Sum_probs=46.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++++     .|++...+....  .......+.+++|++|++
T Consensus        24 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~   94 (253)
T PRK14267         24 DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYP   94 (253)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCC
Confidence            4678899999999999999999999999998763     677654432111  111223345689999875

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=1.6e-13  Score=93.72  Aligned_cols=64  Identities=16%  Similarity=0.082  Sum_probs=48.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.+..|.+...+....... ..+.+.+++|++|++
T Consensus        30 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~   94 (280)
T PRK13633         30 NLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNP   94 (280)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecCh
Confidence            4678999999999999999999999999999998887765543211111 123456789999875

>KOG0730|consensus

Probab=99.40  E-value=1e-12  Score=97.07  Aligned_cols=90  Identities=47%  Similarity=0.834  Sum_probs=84.5

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP   88 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~   88 (102)
                      +++||+..+.+.+++.+.+++.++..+.+++++++.+++++||||+|||.++++++.......+.+++..+.+++.++++
T Consensus       184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte  263 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE  263 (693)
T ss_pred             cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccchh
Q psy16321         89 KLVRVALVPE   98 (102)
Q Consensus        89 ~~~~~~~~~q   98 (102)
                      ...|..|...
T Consensus       264 ~~LR~~f~~a  273 (693)
T KOG0730|consen  264 SNLRKAFAEA  273 (693)
T ss_pred             HHHHHHHHHH
Confidence            8877666543

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=1.8e-13  Score=91.44  Aligned_cols=64  Identities=14%  Similarity=0.058  Sum_probs=47.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh---ccC---chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK---YLG---DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~---~~~---~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..+..|.+...+....   ...   ....+.+++|++|++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~   91 (242)
T PRK11124         22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY   91 (242)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence            4678899999999999999999999999999988887765442110   001   122345688999875

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.40  E-value=1.7e-13  Score=92.51  Aligned_cols=64  Identities=20%  Similarity=0.137  Sum_probs=48.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+.++..|.+...+...........+.+++|++|++
T Consensus        41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~  104 (257)
T cd03288          41 KAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDP  104 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCC
Confidence            4678899999999999999999999999999888777765432212222234456789999875

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.39  E-value=1.9e-13  Score=100.11  Aligned_cols=64  Identities=20%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|.+..++.........+.+.+++|++|++
T Consensus       342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~  405 (529)
T TIGR02857       342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP  405 (529)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCC
Confidence            3568899999999999999999999999999999888876655444455566777899999986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.39  E-value=1.4e-13  Score=93.41  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+........   ...+.+++|++|++
T Consensus        27 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~   93 (269)
T PRK11831         27 SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSG   93 (269)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEeccc
Confidence            57789999999999999999999999999999888877654321111111   12234588998874

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.39  E-value=2.2e-13  Score=91.38  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC--------chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG--------DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~--------~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++..|.+...+.......        ....+.+++|++|++
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   94 (250)
T PRK11264         23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF   94 (250)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence            4678899999999999999999999999999988887754432111100        112345688999874

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.39  E-value=1.5e-13  Score=101.72  Aligned_cols=63  Identities=17%  Similarity=0.147  Sum_probs=53.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|++ |..|+|..++...........+..++|++|++
T Consensus       370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~  432 (588)
T PRK11174        370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNP  432 (588)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCC
Confidence            4668899999999999999999999999999 88888876655445556667778899999986

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=1.8e-13  Score=92.04  Aligned_cols=64  Identities=17%  Similarity=0.098  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|.+...+.......... .+..++|++|++
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   89 (255)
T PRK11300         25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHV   89 (255)
T ss_pred             eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCc
Confidence            5678899999999999999999999999999998887765543211111111 223467788874

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.39  E-value=2e-13  Score=103.15  Aligned_cols=64  Identities=25%  Similarity=0.221  Sum_probs=54.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|..|+|..++...........+.+++|++|++
T Consensus       501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~  564 (711)
T TIGR00958       501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEP  564 (711)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCc
Confidence            4668899999999999999999999999999999888876655445556667778899999986

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=1.4e-13  Score=93.84  Aligned_cols=64  Identities=14%  Similarity=0.039  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+.........+.+..++|++|++
T Consensus        27 ~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~   90 (277)
T PRK13642         27 SFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNP   90 (277)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECH
Confidence            4678999999999999999999999999999998777765432111112223445689999975

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=1.4e-13  Score=95.78  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hc---------------cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KY---------------LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~---------------~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.+..|.|...+... ..               ......+.+++|++|++
T Consensus        46 sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~  125 (320)
T PRK13631         46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFP  125 (320)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECc
Confidence            467899999999999999999999999999999888776543211 11               01223456789999975

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.39  E-value=2e-13  Score=91.12  Aligned_cols=64  Identities=19%  Similarity=0.166  Sum_probs=44.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.  .+..|.+...+.......... .+..++|++|++
T Consensus        20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   86 (243)
T TIGR01978        20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYP   86 (243)
T ss_pred             ceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccc
Confidence            5678999999999999999999999999985  567777655432111111111 123477888875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.39  E-value=1.9e-13  Score=91.24  Aligned_cols=64  Identities=16%  Similarity=0.140  Sum_probs=47.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||+|||||+++|+|+++|..|.+...+.......... .+..++|++|++
T Consensus        22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   86 (242)
T TIGR03411        22 SLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKP   86 (242)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEecccc
Confidence            5678999999999999999999999999999988887765543211111111 223588888874

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.39  E-value=2.3e-13  Score=88.58  Aligned_cols=63  Identities=14%  Similarity=0.115  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..+.+...+....... ...+..++|++|+.
T Consensus        20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~   82 (198)
T TIGR01189        20 SFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLP   82 (198)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCc
Confidence            5678999999999999999999999999999988877765432111111 22335678888753

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.39  E-value=2.2e-13  Score=100.83  Aligned_cols=64  Identities=16%  Similarity=0.154  Sum_probs=53.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|++..++...........+..++|++|++
T Consensus       360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~  423 (574)
T PRK11160        360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRV  423 (574)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccc
Confidence            3567899999999999999999999999999999888877655444555566677899999986

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.39  E-value=1.5e-13  Score=87.16  Aligned_cols=62  Identities=15%  Similarity=0.197  Sum_probs=45.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPE   98 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q   98 (102)
                      ++.+.+|+.++|.||||||||||+++|+|+.+|..+.+...+........ ...+.+++|++|
T Consensus        20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q   82 (163)
T cd03216          20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ   82 (163)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe
Confidence            46789999999999999999999999999999988877655432111111 122345777765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.38  E-value=1.4e-13  Score=90.50  Aligned_cols=63  Identities=16%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .++.+.+|+.++|+||||+|||||+++|+|+.++..|++...+.....  ....+..++|++|++
T Consensus        17 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~~~i~~v~q~~   79 (213)
T TIGR01277        17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG--LAPYQRPVSMLFQEN   79 (213)
T ss_pred             eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc--CChhccceEEEeccC
Confidence            467889999999999999999999999999999988877654321111  112345688988875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.38  E-value=2.4e-13  Score=91.11  Aligned_cols=64  Identities=19%  Similarity=0.045  Sum_probs=46.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+..   +..|++...+...........+..++|++|++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~   88 (246)
T PRK14269         22 NMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQP   88 (246)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCC
Confidence            46789999999999999999999999999874   45676654432111122223445689999875

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.38  E-value=8.8e-14  Score=91.78  Aligned_cols=59  Identities=20%  Similarity=0.152  Sum_probs=44.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..|..|.+...+....     ..+.+++|++|++
T Consensus        24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~   82 (220)
T cd03293          24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT-----GPGPDRGYVFQQD   82 (220)
T ss_pred             eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc-----cccCcEEEEeccc
Confidence            5678899999999999999999999999999888887765432111     1123577777764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=1.9e-13  Score=93.14  Aligned_cols=64  Identities=22%  Similarity=0.099  Sum_probs=48.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|++++..|.+...+.....  ......+.+++|++|++
T Consensus        22 sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~   87 (275)
T PRK13639         22 NFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP   87 (275)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeCh
Confidence            57789999999999999999999999999999988877655432111  11123455789999985

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.38  E-value=2.3e-13  Score=100.86  Aligned_cols=64  Identities=20%  Similarity=0.109  Sum_probs=53.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+|+||||||||+++|+|++.|..|.+..++...........+.+++|++|++
T Consensus       361 ~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~  424 (592)
T PRK10790        361 NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDP  424 (592)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCC
Confidence            4668899999999999999999999999999999888776654444555667778899999986

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.38  E-value=2.1e-13  Score=102.65  Aligned_cols=64  Identities=20%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||++.|+|+++|..|++..++...........+..++|++|++
T Consensus       485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~  548 (694)
T TIGR03375       485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP  548 (694)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCCh
Confidence            4668899999999999999999999999999999888876665445556667778899999985

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.38  E-value=1.6e-13  Score=93.17  Aligned_cols=75  Identities=11%  Similarity=0.101  Sum_probs=50.6

Q ss_pred             hhhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH----HHHHHccchhh
Q psy16321         26 ELPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP----KLVRVALVPEV   99 (102)
Q Consensus        26 ~~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~   99 (102)
                      ...+.....+.  ++++.+|++++|+||||||||||+++|+|++++..|.+...+..........    .+.+++|++|+
T Consensus        31 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~  110 (269)
T cd03294          31 LKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQS  110 (269)
T ss_pred             hhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecC
Confidence            33333433344  4678899999999999999999999999999998877765432111111111    12358888887


Q ss_pred             h
Q psy16321        100 R  100 (102)
Q Consensus       100 ~  100 (102)
                      +
T Consensus       111 ~  111 (269)
T cd03294         111 F  111 (269)
T ss_pred             c
Confidence            4

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=1.9e-13  Score=90.90  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=47.9

Q ss_pred             HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ..++++.+|+.++|+||||||||||+++|+|+..+..|.+...+......  ...+..++|++|++
T Consensus        17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~   80 (232)
T PRK10771         17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT--PPSRRPVSMLFQEN   80 (232)
T ss_pred             eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC--ChhhccEEEEeccc
Confidence            34678899999999999999999999999999998877776543211111  11234688888874

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.38  E-value=2.3e-13  Score=91.43  Aligned_cols=64  Identities=13%  Similarity=0.120  Sum_probs=47.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-------------chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-------------DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+..|++...+.......             ....+.+++|++|++
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   96 (252)
T TIGR03005        20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSF   96 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEEecCc
Confidence            5678999999999999999999999999999998887765432111110             012345688998874

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=2.2e-13  Score=93.20  Aligned_cols=64  Identities=17%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+.++..|.+...+....  .......+.+++|++|++
T Consensus        26 s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~   91 (283)
T PRK13636         26 NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP   91 (283)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence            4678999999999999999999999999999998887765543211  111223455789999975

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.38  E-value=2.1e-13  Score=90.62  Aligned_cols=62  Identities=18%  Similarity=0.139  Sum_probs=45.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc----cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA----TFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|.||||||||||+++|+|+.+|    ..|.+...+......  ...+..++|++|++
T Consensus         6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~   71 (230)
T TIGR02770         6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNP   71 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCc
Confidence            567889999999999999999999999999988    677765443211111  11224688888875

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.38  E-value=1.9e-13  Score=96.04  Aligned_cols=65  Identities=20%  Similarity=0.199  Sum_probs=48.9

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc----cCchHHHHHHccchhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY----LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~q~~  100 (102)
                      .++++.+|+.++|+||||||||||+++|+|+.+|+.|.+...+.....    ......+++++|++|++
T Consensus        17 vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~   85 (352)
T PRK11144         17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDA   85 (352)
T ss_pred             EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCc
Confidence            467889999999999999999999999999999988877654321111    01223345789999875

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.38  E-value=3.1e-13  Score=99.56  Aligned_cols=64  Identities=20%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|.+..++.........+.+..++|++|++
T Consensus       352 nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~  415 (571)
T TIGR02203       352 SLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV  415 (571)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCc
Confidence            4568899999999999999999999999999999888877665445556667777899999986

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.37  E-value=2.8e-13  Score=88.58  Aligned_cols=63  Identities=16%  Similarity=0.103  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.+...+...... ....+.+++|++|++
T Consensus        21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~-~~~~~~~~~~~~~~~   83 (204)
T PRK13538         21 SFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ-RDEYHQDLLYLGHQP   83 (204)
T ss_pred             eEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc-hHHhhhheEEeCCcc
Confidence            567899999999999999999999999999999888776543211111 122344677777753

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.37  E-value=3e-13  Score=99.77  Aligned_cols=64  Identities=25%  Similarity=0.350  Sum_probs=52.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|++.|..|++..++...........+..++|++|++
T Consensus       360 nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~  423 (576)
T TIGR02204       360 NLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDP  423 (576)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCC
Confidence            4668899999999999999999999999999998887766554334445556667899999986

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=2e-13  Score=93.55  Aligned_cols=64  Identities=16%  Similarity=0.062  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc----CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL----GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||+|||||+++|+|+.+|..|.+..........    ...+.+..++|++|++
T Consensus        27 sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~   94 (287)
T PRK13641         27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFP   94 (287)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeCh
Confidence            467899999999999999999999999999999888776544211110    1123345688999875

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.37  E-value=2.4e-13  Score=91.98  Aligned_cols=59  Identities=15%  Similarity=0.134  Sum_probs=45.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|.+...+..     ....+.+++|++|++
T Consensus        32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~-----~~~~~~~i~~v~q~~   90 (257)
T PRK11247         32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP-----LAEAREDTRLMFQDA   90 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEE-----HHHhhCceEEEecCc
Confidence            46788999999999999999999999999999988877543211     012334578888874

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.37  E-value=3.7e-13  Score=91.33  Aligned_cols=64  Identities=16%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++     ..|.|...+.....  ......+.+++|++|++
T Consensus        39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~  109 (267)
T PRK14235         39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP  109 (267)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence            467899999999999999999999999999874     56776544321111  11223445689999875

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=2.4e-13  Score=93.97  Aligned_cols=41  Identities=15%  Similarity=0.138  Sum_probs=36.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.+...
T Consensus        27 sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~   67 (305)
T PRK13651         27 SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI   67 (305)
T ss_pred             EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEe
Confidence            56789999999999999999999999999999988877653

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.37  E-value=2.8e-13  Score=90.40  Aligned_cols=77  Identities=22%  Similarity=0.160  Sum_probs=51.2

Q ss_pred             HHHHhhhhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchh
Q psy16321         21 IKESVELPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPE   98 (102)
Q Consensus        21 i~~~~~~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q   98 (102)
                      ++..+...+.....+.  ++.+.+|+.++|+||||||||||+++|+|+.+|..|++...+..... .....+.+++|++|
T Consensus        23 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~  101 (236)
T cd03267          23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFG  101 (236)
T ss_pred             HHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcC
Confidence            3344434333334444  46688999999999999999999999999999988877654321111 11223345777763

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.37  E-value=3.3e-13  Score=88.11  Aligned_cols=63  Identities=16%  Similarity=0.176  Sum_probs=46.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+..+..|.+...+...... ....+.+++|++|++
T Consensus        20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~   82 (201)
T cd03231          20 SFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ-RDSIARGLLYLGHAP   82 (201)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-cHHhhhheEEecccc
Confidence            467889999999999999999999999999998877775443211111 123445688888764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.37  E-value=3.6e-13  Score=87.28  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=55.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      +|.+..++.++++|.||||||||++.|+|...|+.+++..++....+...+.+..++-++||++|
T Consensus        33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpn   97 (267)
T COG4167          33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPN   97 (267)
T ss_pred             EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCc
Confidence            46788999999999999999999999999999999988877665555555556677889999986

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.37  E-value=2.1e-13  Score=95.21  Aligned_cols=64  Identities=16%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+|+||||||||+++|+|++.+..|.|...+.........   ..+.+++|++|++
T Consensus        41 sl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~  107 (331)
T PRK15079         41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP  107 (331)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCc
Confidence            577899999999999999999999999999998877776543221111111   2334689999985

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.37  E-value=2.9e-13  Score=100.25  Aligned_cols=63  Identities=19%  Similarity=0.208  Sum_probs=53.1

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +.+++|+.++|+||||||||||+++|+|+++|..|.+..++...........+.+++|++|++
T Consensus       356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~  418 (588)
T PRK13657        356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA  418 (588)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence            567899999999999999999999999999999887766654444556667778899999986

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.36  E-value=3.3e-13  Score=90.72  Aligned_cols=42  Identities=17%  Similarity=0.209  Sum_probs=37.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++..|++...+
T Consensus        23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g   64 (253)
T TIGR02323        23 SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM   64 (253)
T ss_pred             eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec
Confidence            577899999999999999999999999999999888776543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.36  E-value=2.7e-13  Score=95.34  Aligned_cols=65  Identities=18%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc----CchHHHHHHccchhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL----GDGPKLVRVALVPEVR  100 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~q~~  100 (102)
                      -++.+.+|+.++|+||||||||||+++|+|+++|+.|.+...+......    .....++.++|++|++
T Consensus        16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~   84 (354)
T TIGR02142        16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA   84 (354)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCC
Confidence            4677899999999999999999999999999999888776543211111    1123345688999875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.36  E-value=2.6e-13  Score=88.62  Aligned_cols=41  Identities=22%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+++|+.++|.||||||||||+++|+|+.++..|++...
T Consensus        25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~   65 (204)
T cd03250          25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVP   65 (204)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEc
Confidence            46689999999999999999999999999999887776543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.36  E-value=4e-13  Score=91.24  Aligned_cols=64  Identities=20%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+..|.+...+........   ...+..++|++|++
T Consensus        32 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~   98 (268)
T PRK10419         32 SLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDS   98 (268)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcCh
Confidence            46789999999999999999999999999999888877655431111111   12345688998874

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.35  E-value=3.9e-13  Score=88.51  Aligned_cols=61  Identities=15%  Similarity=0.202  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++..|++...+....   ....+..++|++|++
T Consensus        31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~---~~~~~~~i~~~~q~~   91 (214)
T PRK13543         31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT---RGDRSRFMAYLGHLP   91 (214)
T ss_pred             eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEcc---chhhhhceEEeecCc
Confidence            4678999999999999999999999999999998888765542111   112234578888764

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.35  E-value=4.4e-13  Score=90.36  Aligned_cols=64  Identities=11%  Similarity=0.093  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc-------------CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL-------------GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||+|||||+++|+|+.++..|++...+......             .....+.+++|++|++
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~  101 (257)
T PRK10619         25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF  101 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEEecCc
Confidence            567899999999999999999999999999998888776543211100             0123345689999875

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.35  E-value=4.7e-13  Score=89.94  Aligned_cols=64  Identities=14%  Similarity=0.100  Sum_probs=45.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..     +..|++...+.....  ......+..++|++|++
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~   96 (253)
T PRK14242         26 SLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP   96 (253)
T ss_pred             eEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence            46789999999999999999999999999864     356666544321111  11123345689999875

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=5.7e-13  Score=97.33  Aligned_cols=64  Identities=17%  Similarity=0.145  Sum_probs=58.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+|+||||||||+++|+|++.+..|++..++...........++++.+++|+|
T Consensus       341 ~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p  404 (559)
T COG4988         341 NLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNP  404 (559)
T ss_pred             eeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCC
Confidence            5678999999999999999999999999999999999988887777777788889999999986

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.35  E-value=4.1e-13  Score=98.85  Aligned_cols=64  Identities=16%  Similarity=0.004  Sum_probs=51.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|.+..++...........+.+++|++|++
T Consensus       343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~  406 (547)
T PRK10522        343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDF  406 (547)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecCh
Confidence            4668899999999999999999999999999999888876554333334445667799999985

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.35  E-value=5.5e-13  Score=88.04  Aligned_cols=64  Identities=20%  Similarity=0.163  Sum_probs=47.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|++++..|++...+........   ...+..++|++|++
T Consensus        25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~   91 (220)
T TIGR02982        25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAH   91 (220)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCCh
Confidence            46688999999999999999999999999999988877654321111111   12345688998875

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.35  E-value=5.1e-13  Score=88.49  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +.+.+|+.++|+||||||||||+++|+|+.++..|++..++...     ...+.+++|++|++
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-----~~~~~~i~~v~q~~   58 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-----GKGWRHIGYVPQRH   58 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-----hHhhCcEEEecccc
Confidence            45789999999999999999999999999998888776543211     12234578888864

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.35  E-value=4.3e-13  Score=87.52  Aligned_cols=64  Identities=22%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.  .+..|++..++........... +.+++|++|++
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   86 (200)
T cd03217          20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYP   86 (200)
T ss_pred             ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecCh
Confidence            4678999999999999999999999999994  6777766554321111111122 23488998875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.35  E-value=2.6e-13  Score=88.72  Aligned_cols=63  Identities=25%  Similarity=0.252  Sum_probs=46.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++   +..+.+...+....... ...+.+++|++|++
T Consensus        27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i~~~~q~~   92 (202)
T cd03233          27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEIIYVSEED   92 (202)
T ss_pred             EEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceEEEEeccc
Confidence            46789999999999999999999999999988   67777665432111111 23344688888864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.35  E-value=5.6e-13  Score=96.94  Aligned_cols=64  Identities=16%  Similarity=0.026  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.+...............+..++|++|++
T Consensus        23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~   86 (490)
T PRK10938         23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRN   86 (490)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCc
Confidence            5678999999999999999999999999999988777754321111111122344588888864

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.35  E-value=4.1e-13  Score=87.32  Aligned_cols=61  Identities=21%  Similarity=0.200  Sum_probs=47.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|.||||||||||+++|+|+.  ++..|++...+....   ....+.+++|++|++
T Consensus        29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~---~~~~~~~i~~~~q~~   91 (194)
T cd03213          29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD---KRSFRKIIGYVPQDD   91 (194)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc---hHhhhheEEEccCcc
Confidence            4678999999999999999999999999999  888887765432111   113345688888874

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.35  E-value=4.9e-13  Score=91.30  Aligned_cols=63  Identities=19%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|++. ..|.|..++...........+.+++|++|++
T Consensus        24 sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~   86 (275)
T cd03289          24 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKV   86 (275)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCc
Confidence            46789999999999999999999999999987 5676665543222334445566799999986

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=7e-13  Score=89.22  Aligned_cols=64  Identities=14%  Similarity=0.147  Sum_probs=46.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++     ..|++...+  +..........+..++|++|++
T Consensus        27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~   97 (254)
T PRK14273         27 NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTP   97 (254)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecc
Confidence            467889999999999999999999999999886     356665433  2111111123345689999875

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.35  E-value=3.2e-13  Score=88.97  Aligned_cols=64  Identities=17%  Similarity=0.109  Sum_probs=46.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC----chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG----DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+..|++...+.......    ....+..++|++|++
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~   88 (218)
T cd03290          21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP   88 (218)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCC
Confidence            4678999999999999999999999999999888777765432111111    112234588988875

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=8.3e-13  Score=88.70  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=46.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+..+     ..|.+...+  +..........+.+++|++|++
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~   94 (251)
T PRK14270         24 NLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKP   94 (251)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCC
Confidence            467889999999999999999999999998764     456665443  2111111223455789999875

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.35  E-value=5.3e-13  Score=98.53  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=55.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+|||||||||+++.|.+++++..|.|..++...+.......+.++++++|++
T Consensus       349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~  412 (567)
T COG1132         349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP  412 (567)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence            4668999999999999999999999999999998777776555446677778888999999986

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=5.9e-13  Score=89.44  Aligned_cols=64  Identities=20%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSE--LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.+.     .|.+...+  +..........+..++|++|++
T Consensus        24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~   94 (251)
T PRK14249         24 NMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP   94 (251)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCC
Confidence            4678899999999999999999999999998875     36655433  2111111223345689999875

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=2.9e-13  Score=92.76  Aligned_cols=64  Identities=13%  Similarity=0.111  Sum_probs=47.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh----cc-CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK----YL-GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.+..|.+...+....    .. .....+..++|++|++
T Consensus        31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~   99 (289)
T PRK13645         31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFP   99 (289)
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCc
Confidence            4678999999999999999999999999999988777754432110    01 1123344688999874

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=2.4e-13  Score=96.98  Aligned_cols=64  Identities=16%  Similarity=0.218  Sum_probs=47.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH----HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP----KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.|..|.+..++..........    ++.+++|++|++
T Consensus        48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~  115 (400)
T PRK10070         48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSF  115 (400)
T ss_pred             EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCC
Confidence            5678999999999999999999999999999998887765432111111111    123588999874

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=7.6e-13  Score=88.76  Aligned_cols=64  Identities=16%  Similarity=0.164  Sum_probs=45.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh-ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK-YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~-~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+.++     ..+.+...+.... .......+..++|++|++
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~   92 (249)
T PRK14253         23 NLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP   92 (249)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCC
Confidence            467899999999999999999999999999875     3566554332111 111223445689999875

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.35  E-value=5.7e-13  Score=90.62  Aligned_cols=64  Identities=17%  Similarity=0.185  Sum_probs=46.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhh--hccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQ--KYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.     +..|.+...+...  ........+..++|++|++
T Consensus        44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~  114 (271)
T PRK14238         44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKP  114 (271)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCC
Confidence            46789999999999999999999999999986     4667665443211  1111223455689999875

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.35  E-value=3.6e-13  Score=89.23  Aligned_cols=61  Identities=18%  Similarity=0.196  Sum_probs=46.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++   +..+.+...+...   .....+++++|++|++
T Consensus        27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~---~~~~~~~~i~~~~q~~   90 (226)
T cd03234          27 SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR---KPDQFQKCVAYVRQDD   90 (226)
T ss_pred             eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC---ChHHhcccEEEeCCCC
Confidence            56789999999999999999999999999988   7777765543211   1123345688888874

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.35  E-value=5.5e-13  Score=98.58  Aligned_cols=64  Identities=19%  Similarity=0.230  Sum_probs=51.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|++..++...........+..++|++|++
T Consensus       335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~  398 (569)
T PRK10789        335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP  398 (569)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence            4568899999999999999999999999999999887765544333344455667799999985

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.35  E-value=4.9e-13  Score=90.32  Aligned_cols=64  Identities=14%  Similarity=0.087  Sum_probs=46.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..     +..|.+...+....  .......+.+++|++|++
T Consensus        33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~  103 (260)
T PRK10744         33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP  103 (260)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence            46789999999999999999999999999975     35666654432111  111223345689999875

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=3.2e-13  Score=94.15  Aligned_cols=64  Identities=14%  Similarity=0.056  Sum_probs=48.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.+..|.+...+........   ...+.+++|++|++
T Consensus        35 sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~  101 (327)
T PRK11308         35 SFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNP  101 (327)
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCc
Confidence            57789999999999999999999999999998887777654321111111   12334689999986

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=5.4e-13  Score=90.64  Aligned_cols=64  Identities=19%  Similarity=0.121  Sum_probs=45.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+     +..|.+...+....  .......+.+++|++|++
T Consensus        33 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~  103 (269)
T PRK14259         33 FCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP  103 (269)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence            46789999999999999999999999999976     45666654332111  111223445688999875

>KOG0058|consensus

Probab=99.35  E-value=7.8e-13  Score=98.56  Aligned_cols=67  Identities=21%  Similarity=0.253  Sum_probs=59.0

Q ss_pred             HHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         34 YYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        34 ~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .+++  |+++||+.++|+||||+||||++..|-+++.|+.|.|..++...+..+....++++++|-|+|
T Consensus       483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP  551 (716)
T KOG0058|consen  483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP  551 (716)
T ss_pred             hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence            5554  568999999999999999999999999999999998887777667777778888999999987

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.35  E-value=6e-13  Score=89.29  Aligned_cols=64  Identities=19%  Similarity=0.113  Sum_probs=46.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..+     ..|.+..++.....  ......+.+++|++|++
T Consensus        23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~   93 (250)
T PRK14262         23 TMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP   93 (250)
T ss_pred             eEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCC
Confidence            577899999999999999999999999998863     56666544321111  11123345689999875

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.34  E-value=3.8e-13  Score=85.58  Aligned_cols=40  Identities=33%  Similarity=0.400  Sum_probs=36.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..+++..
T Consensus        21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~   60 (166)
T cd03223          21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM   60 (166)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence            4678899999999999999999999999999988777754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.34  E-value=2.5e-12  Score=90.65  Aligned_cols=62  Identities=23%  Similarity=0.286  Sum_probs=57.2

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV   99 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~   99 (102)
                      .++.++.+++|+||||||||.++++|+..+...++.+++.++.+++.++++++.|..|..+.
T Consensus       143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~  204 (413)
T PLN00020        143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAA  204 (413)
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999988886553

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.34  E-value=3.4e-13  Score=91.71  Aligned_cols=61  Identities=20%  Similarity=0.144  Sum_probs=45.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|++...+....   ....+.+++|++|++
T Consensus        27 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~---~~~~~~~i~~v~q~~   87 (272)
T PRK15056         27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR---QALQKNLVAYVPQSE   87 (272)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhH---HhhccceEEEecccc
Confidence            4678899999999999999999999999999998887754432111   111122478888764

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.34  E-value=5.7e-13  Score=89.55  Aligned_cols=64  Identities=14%  Similarity=0.085  Sum_probs=45.7

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .++.+.+|++++|+||||||||||+++|+|+.++ .|.+...+...........+..++|++|++
T Consensus        15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~   78 (248)
T PRK03695         15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQ   78 (248)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccC
Confidence            3577899999999999999999999999999854 676654432111112223344578988874

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.34  E-value=5.5e-13  Score=93.02  Aligned_cols=65  Identities=23%  Similarity=0.208  Sum_probs=45.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC----ccEEEEccchhhhhccCchHH----HHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS----ATFLRVVGSELIQKYLGDGPK----LVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~----~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~q~~~  101 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+    ++.|.|...+.........+.    +++++|++|++.
T Consensus        27 sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence            57789999999999999999999999999986    355666544321111111121    125889999863

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.34  E-value=5.6e-13  Score=98.02  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|..|.+..++...........+..++|++|++
T Consensus       338 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~  401 (544)
T TIGR01842       338 SFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDV  401 (544)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCc
Confidence            4668899999999999999999999999999999887765544333334445667899999985

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.34  E-value=4.3e-13  Score=90.42  Aligned_cols=40  Identities=28%  Similarity=0.401  Sum_probs=36.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..|..|.+..
T Consensus        24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~   63 (251)
T PRK09544         24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR   63 (251)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            5778999999999999999999999999999988887754

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.34  E-value=6.4e-13  Score=87.10  Aligned_cols=60  Identities=17%  Similarity=0.149  Sum_probs=45.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV   99 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~   99 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+..|.+...+....   ....+..++|++|+
T Consensus        22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~---~~~~~~~~~~~~~~   81 (207)
T PRK13539         22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID---DPDVAEACHYLGHR   81 (207)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCc---chhhHhhcEEecCC
Confidence            5678999999999999999999999999999988887765432111   11134567787765

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.34  E-value=6.8e-13  Score=89.03  Aligned_cols=64  Identities=17%  Similarity=0.148  Sum_probs=45.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++     ..|++...+....  .......+.+++|++|++
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   93 (250)
T PRK14240         23 NLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP   93 (250)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCC
Confidence            567889999999999999999999999998652     3566654432111  112223445689999875

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.33  E-value=6.8e-13  Score=99.97  Aligned_cols=64  Identities=19%  Similarity=0.214  Sum_probs=54.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|++.|..|.|..++.........+.+..++|++|++
T Consensus       477 ~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~  540 (694)
T TIGR01846       477 NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQEN  540 (694)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCC
Confidence            4568899999999999999999999999999999888877665445556667777899999985

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.33  E-value=7e-13  Score=87.65  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=36.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++..|.+..
T Consensus        28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~   67 (224)
T TIGR02324        28 SLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV   67 (224)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence            5678999999999999999999999999999988777764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.2e-12  Score=88.34  Aligned_cols=64  Identities=13%  Similarity=0.120  Sum_probs=45.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+     ..|.+...+  +..........+..++|++|++
T Consensus        32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~  102 (259)
T PRK14274         32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG  102 (259)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence            467889999999999999999999999999863     356654433  2110111223345689999875

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.33  E-value=8e-13  Score=85.76  Aligned_cols=60  Identities=18%  Similarity=0.116  Sum_probs=44.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.  ++..+++...+....    ...+.+++|++|++
T Consensus        27 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~   88 (192)
T cd03232          27 SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQD   88 (192)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccC
Confidence            4678899999999999999999999999975  356676654432111    23345688888864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.33  E-value=6.3e-13  Score=92.79  Aligned_cols=64  Identities=13%  Similarity=0.061  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhccCchHH---H-HHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYLGDGPK---L-VRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~~~~~~---~-~~~~~~~q~~  100 (102)
                      +|++.+|++++|+|+||||||||+++|+|++.+.   .|.|...+.........+.   + .+++|++|++
T Consensus        36 sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~  106 (330)
T PRK09473         36 NFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP  106 (330)
T ss_pred             EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCc
Confidence            5778999999999999999999999999999874   6666544321111122221   1 2589999986

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.33  E-value=7.9e-13  Score=87.96  Aligned_cols=62  Identities=26%  Similarity=0.218  Sum_probs=46.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||+|||||+++|+|++++..|.+...+......  ...+..++|++|++
T Consensus        20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~   81 (232)
T cd03300          20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL--PPHKRPVNTVFQNY   81 (232)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC--ChhhcceEEEeccc
Confidence            466889999999999999999999999999999887775543211111  12234678888874

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.32  E-value=6.6e-13  Score=87.26  Aligned_cols=65  Identities=15%  Similarity=0.167  Sum_probs=47.3

Q ss_pred             HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc----CchHHHHHHccchhhh
Q psy16321         35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL----GDGPKLVRVALVPEVR  100 (102)
Q Consensus        35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~q~~  100 (102)
                      ..++++.+ +.++|+||||||||||+++|+|+++|..|.+...+......    .....+..++|++|++
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~   84 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY   84 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence            45678899 99999999999999999999999998877775443211100    1112345688998875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.32  E-value=6.8e-13  Score=88.57  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=46.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+..+..|++...+.....  ....+..++|++|++
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~--~~~~~~~i~~~~q~~   81 (237)
T TIGR00968        20 NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATR--VHARDRKIGFVFQHY   81 (237)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCc--CChhhcCEEEEecCh
Confidence            46789999999999999999999999999998887877654321111  112344688888875

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.32  E-value=4.7e-13  Score=90.16  Aligned_cols=62  Identities=19%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc----cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA----TFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++    ..|++...+....  .....+..++|++|++
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~--~~~~~~~~i~~v~q~~   88 (254)
T PRK10418         23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVA--PCALRGRKIATIMQNP   88 (254)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecc--ccccccceEEEEecCC
Confidence            567899999999999999999999999999988    6676654432111  1111224588888875

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=7.9e-13  Score=89.66  Aligned_cols=64  Identities=14%  Similarity=0.206  Sum_probs=44.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..     +..|.+...+  +..........+.+++|++|++
T Consensus        41 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~  111 (268)
T PRK14248         41 SMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP  111 (268)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCC
Confidence            46788999999999999999999999999764     4566665433  2111111123345688998875

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.32  E-value=8.4e-13  Score=89.05  Aligned_cols=64  Identities=14%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+     ..|.|...+....  .......+..++|++|++
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~   94 (258)
T PRK14241         24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRP   94 (258)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccc
Confidence            467889999999999999999999999999864     4676655432111  111223345688998874

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.32  E-value=6.6e-13  Score=97.01  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=46.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+..|..|.+...+.......... .+.+++|++|++
T Consensus        25 s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~   89 (510)
T PRK09700         25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQEL   89 (510)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecc
Confidence            5678999999999999999999999999999988787765432111111111 223588999874

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.32  E-value=7.2e-13  Score=89.45  Aligned_cols=41  Identities=20%  Similarity=0.319  Sum_probs=36.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...
T Consensus        21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~   61 (255)
T PRK11248         21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD   61 (255)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence            56789999999999999999999999999999887777543

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.32  E-value=7.6e-13  Score=92.24  Aligned_cols=64  Identities=14%  Similarity=0.132  Sum_probs=45.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc----cEEEEccchhhhhccCchHHH----HHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA----TFLRVVGSELIQKYLGDGPKL----VRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~----~~~~i~~~~~~~~~~~~~~~~----~~~~~~~q~~  100 (102)
                      +|++.+|++++|+||||||||||+++|+|++.+    +.|.+...+.........+.+    ..++|++|++
T Consensus        27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~   98 (326)
T PRK11022         27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDP   98 (326)
T ss_pred             EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence            577899999999999999999999999999863    456555443211111111211    2489999985

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=1.7e-12  Score=87.15  Aligned_cols=64  Identities=13%  Similarity=0.080  Sum_probs=45.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQKYL--GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..     +..|++...+......  .....+.+++|++|++
T Consensus        25 s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~   95 (251)
T PRK14244         25 NLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKP   95 (251)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCc
Confidence            46788999999999999999999999999975     3467665443211111  1123355789999875

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=9.2e-13  Score=88.44  Aligned_cols=64  Identities=20%  Similarity=0.179  Sum_probs=45.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|++.+.     .+.+...+....  .......+.+++|++|++
T Consensus        24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   94 (252)
T PRK14272         24 NLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKP   94 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccC
Confidence            4668899999999999999999999999998753     566654332111  011123345688999875

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.32  E-value=1.1e-12  Score=88.63  Aligned_cols=64  Identities=14%  Similarity=0.118  Sum_probs=45.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhcc-----CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYL-----GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~-----~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|.   .|.+...+......     .....+.+++|++|++
T Consensus        24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~   95 (262)
T PRK09984         24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF   95 (262)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence            5678899999999999999999999999998764   36655433211111     1123345689999875

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.32  E-value=8.2e-13  Score=88.08  Aligned_cols=62  Identities=16%  Similarity=0.262  Sum_probs=46.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++..|.+...+.....  ....+.+++|++|++
T Consensus        19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~--~~~~~~~i~~~~q~~   80 (235)
T cd03299          19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISYVPQNY   80 (235)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCc--CChhHcCEEEEeecC
Confidence            46788999999999999999999999999999988877654321111  112345688888864

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.32  E-value=5.5e-13  Score=97.27  Aligned_cols=64  Identities=13%  Similarity=0.195  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.|+.|++...+.......... .+.+++|++|++
T Consensus        24 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   88 (501)
T PRK10762         24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQEL   88 (501)
T ss_pred             eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcch
Confidence            5678899999999999999999999999999998887765432111111111 223578998874

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.31  E-value=1e-12  Score=82.70  Aligned_cols=62  Identities=26%  Similarity=0.264  Sum_probs=44.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPE   98 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q   98 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|++++..+.+...+.........+.+..++|++|
T Consensus        19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q   80 (157)
T cd00267          19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ   80 (157)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence            56788999999999999999999999999999887777655431111111223345666665

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=1.1e-12  Score=88.49  Aligned_cols=64  Identities=17%  Similarity=0.049  Sum_probs=45.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYL--GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++     ..|++...+......  .....+..++|++|++
T Consensus        32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~  102 (258)
T PRK14268         32 SMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKP  102 (258)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCC
Confidence            467899999999999999999999999999864     567665443211111  1123345689999875

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=1.3e-12  Score=87.74  Aligned_cols=64  Identities=14%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--c---cEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--A---TFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~---~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+  +   ..+++.........  ......+.+++|++|++
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~   94 (252)
T PRK14256         24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP   94 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCC
Confidence            46789999999999999999999999999975  3   35666544321111  11123345688999874

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.31  E-value=1e-12  Score=85.38  Aligned_cols=43  Identities=16%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .++++.+|+.++|+||||||||||+++|+|+.++..|.+...+
T Consensus        19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g   61 (195)
T PRK13541         19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN   61 (195)
T ss_pred             EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence            3577899999999999999999999999999999888776543

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=1.3e-12  Score=89.06  Aligned_cols=64  Identities=19%  Similarity=0.114  Sum_probs=46.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhcc-CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYL-GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~-~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+.++     ..+.+.......... .....+.+++|++|++
T Consensus        41 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~  110 (276)
T PRK14271         41 SMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP  110 (276)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence            467889999999999999999999999999875     466665543211111 1123455789999875

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=1.3e-12  Score=88.51  Aligned_cols=64  Identities=13%  Similarity=-0.003  Sum_probs=46.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|++.|     ..|++...+....  .......+.+++|++|++
T Consensus        28 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~   98 (261)
T PRK14263         28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP   98 (261)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence            567899999999999999999999999999875     4666654432111  111223445689999875

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.30  E-value=1.7e-12  Score=88.04  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++.+     ..|++..++....  .......+..++|++|++
T Consensus        40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~  110 (267)
T PRK14237         40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRP  110 (267)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCC
Confidence            467899999999999999999999999999863     5666654432111  111223355689999874

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.30  E-value=1.2e-12  Score=96.58  Aligned_cols=64  Identities=14%  Similarity=0.003  Sum_probs=52.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|+.|.+..++.........+.+..+++++|++
T Consensus       362 s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~  425 (555)
T TIGR01194       362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADF  425 (555)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccCh
Confidence            4668899999999999999999999999999999888876654333444455667789999975

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.30  E-value=1.2e-12  Score=97.18  Aligned_cols=64  Identities=19%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|++..++...........+..++|++|++
T Consensus       355 ~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~  418 (585)
T TIGR01192       355 SFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDA  418 (585)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCC
Confidence            4668899999999999999999999999999999887765544333344445667799999985

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=1.8e-12  Score=87.07  Aligned_cols=64  Identities=13%  Similarity=0.070  Sum_probs=45.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..     +..|++...+....  .......+..++|++|++
T Consensus        24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~   94 (251)
T PRK14251         24 SLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQP   94 (251)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCC
Confidence            56789999999999999999999999999986     24666654432111  111123345688888874

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.30  E-value=1.1e-12  Score=86.63  Aligned_cols=60  Identities=18%  Similarity=0.164  Sum_probs=45.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|++++..|.+...+....   ... .+.++|++|++
T Consensus        20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~---~~~-~~~~~~~~q~~   79 (223)
T TIGR03740        20 SLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWT---RKD-LHKIGSLIESP   79 (223)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecc---ccc-cccEEEEcCCC
Confidence            4678899999999999999999999999999988887765432111   111 23577887764

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=1.2e-12  Score=88.03  Aligned_cols=64  Identities=14%  Similarity=0.092  Sum_probs=44.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhcc--CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYL--GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~--~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+     ..|++...+......  .....+..++|++|++
T Consensus        26 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   96 (253)
T PRK14261         26 TISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRP   96 (253)
T ss_pred             EEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCC
Confidence            467899999999999999999999999998652     256665443211111  1223345688998875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.30  E-value=1.1e-12  Score=96.05  Aligned_cols=64  Identities=19%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|..|.+...+.......... .+..++|++|++
T Consensus        31 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   95 (510)
T PRK15439         31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEP   95 (510)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccC
Confidence            4678899999999999999999999999999998887765432111111111 123478999875

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.30  E-value=9.2e-13  Score=93.52  Aligned_cols=64  Identities=20%  Similarity=0.166  Sum_probs=47.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh----hhhccCchH---H-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL----IQKYLGDGP---K-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~----~~~~~~~~~---~-~~~~~~~~q~~  100 (102)
                      +|++.+|+.++|+||||||||||+++|+|++.|+.|++...+.    ........+   . +.+++|++|++
T Consensus        44 sf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~  115 (382)
T TIGR03415        44 SLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF  115 (382)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence            4678999999999999999999999999999998887765431    111111111   1 13589999975

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.30  E-value=2.9e-12  Score=86.85  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=45.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..+     ..|.+...+  +........+.+.+++|++|++
T Consensus        30 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~  100 (264)
T PRK14243         30 WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKP  100 (264)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCC
Confidence            567899999999999999999999999998752     456665433  2111111223455689999874

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.29  E-value=8.8e-14  Score=90.74  Aligned_cols=65  Identities=15%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~~  101 (102)
                      ++++.+|++++|.||||+||||.+.++.|+..++.+.+..++......+ ...++..++|++|++.
T Consensus        24 sl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S   89 (243)
T COG1137          24 SLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS   89 (243)
T ss_pred             eEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccch
Confidence            5778999999999999999999999999999999888876654333333 3445567999999863

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.29  E-value=1.6e-12  Score=86.52  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=36.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++..|++...
T Consensus         5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~   45 (230)
T TIGR01184         5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE   45 (230)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence            57788999999999999999999999999999887777544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.29  E-value=1.8e-12  Score=83.13  Aligned_cols=64  Identities=22%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hH---HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GP---KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+-.++|+..++.+++..........++ ..   +..+++||||..
T Consensus        30 ~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF   97 (228)
T COG4181          30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSF   97 (228)
T ss_pred             eEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEee
Confidence            46789999999999999999999999999999998877654332222222 12   234699999974

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=2.6e-12  Score=87.51  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=45.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+     ..|.+...+  +..........+.+++|++|++
T Consensus        40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~  110 (274)
T PRK14265         40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRP  110 (274)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCC
Confidence            467899999999999999999999999998753     356555433  2111111223345788999874

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=1.8e-12  Score=88.84  Aligned_cols=64  Identities=14%  Similarity=0.080  Sum_probs=45.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh-c-cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK-Y-LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||||||||+++|+|+..     +..|.+..++.... . ......+.+++|++|++
T Consensus        59 sl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~  129 (286)
T PRK14275         59 NADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP  129 (286)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCC
Confidence            46789999999999999999999999999754     36676655432111 1 11123345689999875

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.29  E-value=1.2e-12  Score=87.84  Aligned_cols=41  Identities=22%  Similarity=0.306  Sum_probs=35.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhh--hCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~--~~~~~~~i~~~   77 (102)
                      ++++.+|+.++|+||||||||||+++|+|+  +++..|.+...
T Consensus        27 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~   69 (252)
T CHL00131         27 NLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFK   69 (252)
T ss_pred             eeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEEC
Confidence            477899999999999999999999999997  45666766544

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.29  E-value=1.7e-12  Score=86.87  Aligned_cols=64  Identities=17%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.  ++..|++...+........... +..++|++|++
T Consensus        21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~   87 (248)
T PRK09580         21 NLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYP   87 (248)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCc
Confidence            4678899999999999999999999999994  5777777554321111111112 23477887764

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=2.2e-12  Score=86.60  Aligned_cols=64  Identities=14%  Similarity=0.107  Sum_probs=45.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--c---cEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--A---TFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~---~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||+|||||+++|+|+..  +   ..|++...+.....  ......+.+++|++|++
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~   93 (250)
T PRK14266         23 NLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKP   93 (250)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCC
Confidence            46788999999999999999999999999864  2   45666544321111  11223456789999875

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=1.6e-12  Score=89.06  Aligned_cols=64  Identities=14%  Similarity=0.114  Sum_probs=45.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.     +..|.+...+.....  ......+.+++|++|++
T Consensus        59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~  129 (285)
T PRK14254         59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKP  129 (285)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence            46789999999999999999999999999986     456766544321111  11123345688999875

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=1.8e-12  Score=87.57  Aligned_cols=64  Identities=16%  Similarity=0.061  Sum_probs=45.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch------hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE------LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~------~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+..+..+++...+      ...........+..++|++|++
T Consensus        30 s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~   99 (257)
T PRK14246         30 TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP   99 (257)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCC
Confidence            466889999999999999999999999999988765543221      1001111223345688998875

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.28  E-value=2.7e-12  Score=86.15  Aligned_cols=64  Identities=16%  Similarity=0.157  Sum_probs=44.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--c---cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--A---TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~---~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..  |   ..|.+...+....  .......+..++|++|++
T Consensus        25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~   95 (252)
T PRK14239         25 SLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQP   95 (252)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCC
Confidence            46788999999999999999999999999843  4   2566654432111  111123345689999875

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.28  E-value=1.9e-12  Score=93.69  Aligned_cols=64  Identities=16%  Similarity=0.162  Sum_probs=54.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|.+.+|+.++|+||||||||||+|+|.|.-.|..+.+..+.-..+.+.....-++++|.+|+-
T Consensus       356 sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV  419 (580)
T COG4618         356 SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV  419 (580)
T ss_pred             eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence            4678899999999999999999999999999999888776655445566666778899999973

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.28  E-value=1.6e-11  Score=83.10  Aligned_cols=84  Identities=26%  Similarity=0.376  Sum_probs=58.1

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCC---CCceeEEECCCCCChhHHHHHHHhhhC-------ccEEEE
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGPPGTGKTLLAKAVANQTS-------ATFLRV   74 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~---~~~~~~l~Gp~GsGKStl~~~i~~~~~-------~~~~~i   74 (102)
                      ++.+++++|++++++.|++.+.+...... ....++.   ....++|+|||||||||++++++..+.       .....+
T Consensus         2 ~~~l~~~~Gl~~vk~~i~~~~~~~~~~~~-~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~   80 (261)
T TIGR02881         2 ERELSRMVGLDEVKALIKEIYAWIQINEK-RKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEV   80 (261)
T ss_pred             hHHHHHhcChHHHHHHHHHHHHHHHHHHH-HHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEe
Confidence            35789999999999999999877654322 2223332   234688999999999999999998642       134455


Q ss_pred             ccchhhhhccCchHH
Q psy16321         75 VGSELIQKYLGDGPK   89 (102)
Q Consensus        75 ~~~~~~~~~~~~~~~   89 (102)
                      ...++...+.++...
T Consensus        81 ~~~~l~~~~~g~~~~   95 (261)
T TIGR02881        81 ERADLVGEYIGHTAQ   95 (261)
T ss_pred             cHHHhhhhhccchHH
Confidence            555565555555443

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.6e-12  Score=85.60  Aligned_cols=64  Identities=17%  Similarity=0.090  Sum_probs=44.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh---Cc--cEEEEccchhhhh-c-cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT---SA--TFLRVVGSELIQK-Y-LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~--~~~~i~~~~~~~~-~-~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.   ++  ..|++...+.... . ......+..++|++|++
T Consensus        23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~   93 (250)
T PRK14245         23 SMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRP   93 (250)
T ss_pred             eEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCC
Confidence            5678999999999999999999999999973   33  3566654432111 1 11223445689999874

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.28  E-value=1.2e-12  Score=81.57  Aligned_cols=41  Identities=27%  Similarity=0.297  Sum_probs=37.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+|+.++|.||||+|||||+++|+|+.++..+++..+
T Consensus        20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~   60 (144)
T cd03221          20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG   60 (144)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEEC
Confidence            46789999999999999999999999999999988877654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.28  E-value=1.4e-12  Score=95.13  Aligned_cols=64  Identities=16%  Similarity=0.028  Sum_probs=47.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|+.|.|...+........ ...+.+++|++|++
T Consensus       272 sl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~  336 (501)
T PRK10762        272 SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR  336 (501)
T ss_pred             eEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence            56788999999999999999999999999999988887654321111111 12234589999974

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.28  E-value=1.3e-12  Score=95.47  Aligned_cols=63  Identities=11%  Similarity=-0.026  Sum_probs=46.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEV   99 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~   99 (102)
                      ++.+.+|++++|+||||||||||+++|+|+.+|..|.|...+........ ...+.+++|++|+
T Consensus       283 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~  346 (510)
T PRK09700        283 SFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITES  346 (510)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCc
Confidence            46689999999999999999999999999999888877654321111111 1223458999986

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=2.2e-12  Score=86.63  Aligned_cols=64  Identities=14%  Similarity=0.068  Sum_probs=44.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--c---cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--A---TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~---~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+  +   ..|+|...+....  .......+.+++|++|++
T Consensus        25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~   95 (252)
T PRK14255         25 DLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQP   95 (252)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCC
Confidence            46788999999999999999999999999864  3   2566554332111  111122334688998874

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.28  E-value=2.1e-12  Score=94.39  Aligned_cols=65  Identities=15%  Similarity=0.074  Sum_probs=49.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh--hhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI--QKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      +|++.+|++++|+|+|||||||++|+|+|+..|+.+.+...+..  .........++++-++||++.
T Consensus       311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~  377 (539)
T COG1123         311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY  377 (539)
T ss_pred             eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcc
Confidence            57789999999999999999999999999999987766554321  121112334567888999863

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.28  E-value=1.3e-12  Score=95.02  Aligned_cols=64  Identities=14%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+........ ...+.+++|++|++
T Consensus        18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   82 (491)
T PRK10982         18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL   82 (491)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence            56788999999999999999999999999999988877644321111111 12234588998874

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=3.7e-12  Score=86.03  Aligned_cols=64  Identities=17%  Similarity=0.065  Sum_probs=45.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.++     ..|.+...+....  .......+..++|++|++
T Consensus        27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~   97 (259)
T PRK14260         27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRP   97 (259)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccc
Confidence            467899999999999999999999999999874     2566654432111  111223445789999875

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.27  E-value=1.5e-12  Score=97.34  Aligned_cols=64  Identities=14%  Similarity=0.160  Sum_probs=47.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~  100 (102)
                      +|.+.+|++++|+||||||||||+++|+|+.+++.|.|...+.........   ..+.+++|++|++
T Consensus       344 s~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~  410 (623)
T PRK10261        344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP  410 (623)
T ss_pred             EeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCc
Confidence            567889999999999999999999999999998888776543211111111   1234689999985

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.27  E-value=4.5e-13  Score=89.27  Aligned_cols=65  Identities=18%  Similarity=0.133  Sum_probs=48.4

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh-ccCchHHHHHHccchhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~q~~  100 (102)
                      .++++.+|++++|+||||+||||++++|.|.++|+.+.+........ .......+..++-.||..
T Consensus        23 Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~   88 (250)
T COG0411          23 VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQIT   88 (250)
T ss_pred             eeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccc
Confidence            35788999999999999999999999999999999888776543222 222233344566677754

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.27  E-value=3.4e-12  Score=86.81  Aligned_cols=64  Identities=19%  Similarity=0.186  Sum_probs=45.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch--hhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE--LIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~--~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+     ..|++...+  +..........+..++|++|++
T Consensus        45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~  115 (272)
T PRK14236         45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP  115 (272)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence            467899999999999999999999999999763     566665433  2111111123345688998874

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.27  E-value=1.8e-12  Score=94.66  Aligned_cols=64  Identities=14%  Similarity=0.098  Sum_probs=45.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++  ..|.+...+.......... .+..++|++|++
T Consensus        25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   91 (506)
T PRK13549         25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQEL   91 (506)
T ss_pred             eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEecc
Confidence            567889999999999999999999999999886  5677654432111111111 234588999874

>CHL00181 cbbX CbbX; Provisional

Probab=99.26  E-value=1.8e-11  Score=84.09  Aligned_cols=80  Identities=25%  Similarity=0.370  Sum_probs=58.2

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCC---CceeEEECCCCCChhHHHHHHHhhhC-------ccEEEEccch
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKP---PKGVILYGPPGTGKTLLAKAVANQTS-------ATFLRVVGSE   78 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~l~Gp~GsGKStl~~~i~~~~~-------~~~~~i~~~~   78 (102)
                      ++++|+++++++|++.+.+.. ........++.+   +-.++|+|||||||||++++++..+.       .+...+...+
T Consensus        23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~  101 (287)
T CHL00181         23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD  101 (287)
T ss_pred             HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence            379999999999999887633 344555555533   44589999999999999999988652       2356666666


Q ss_pred             hhhhccCchHH
Q psy16321         79 LIQKYLGDGPK   89 (102)
Q Consensus        79 ~~~~~~~~~~~   89 (102)
                      +...+.++++.
T Consensus       102 l~~~~~g~~~~  112 (287)
T CHL00181        102 LVGQYIGHTAP  112 (287)
T ss_pred             HHHHHhccchH
Confidence            66666665543

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.26  E-value=3e-12  Score=86.14  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +.+.+|+.++|+||||||||||+++|+|+.+|..|.+..
T Consensus        20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~   58 (246)
T cd03237          20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI   58 (246)
T ss_pred             CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEE
Confidence            346689999999999999999999999999988777654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=3.2e-12  Score=88.34  Aligned_cols=64  Identities=19%  Similarity=0.092  Sum_probs=45.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhhc--cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQKY--LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.     +..|.+...+.....  ......+.+++|++|++
T Consensus        65 s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~  135 (305)
T PRK14264         65 SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSP  135 (305)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCC
Confidence            46788999999999999999999999999975     456666544321111  11223345689999875

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=3.6e-12  Score=86.34  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=44.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccc--hhhh--hccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGS--ELIQ--KYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~--~~~~--~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+     ..+++...  ++..  ........+.+++|++|++
T Consensus        36 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~  108 (265)
T PRK14252         36 NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP  108 (265)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCC
Confidence            466889999999999999999999999999864     45555433  2210  0111123345688998874

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.26  E-value=2.7e-11  Score=83.14  Aligned_cols=82  Identities=26%  Similarity=0.393  Sum_probs=59.8

Q ss_pred             ccc-ccCChHHHHHHHHHHhhhhcCChHHHHhcCCC---CCceeEEECCCCCChhHHHHHHHhhhCc-------cEEEEc
Q psy16321          7 ALK-KRGSLDVQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGPPGTGKTLLAKAVANQTSA-------TFLRVV   75 (102)
Q Consensus         7 ~~~-~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~---~~~~~~l~Gp~GsGKStl~~~i~~~~~~-------~~~~i~   75 (102)
                      ..+ +++|+++++++|++.+.+ ...++.....++.   ++..++|+|||||||||++++++..+..       .+..+.
T Consensus        19 ~l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~   97 (284)
T TIGR02880        19 QLDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT   97 (284)
T ss_pred             HHHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence            445 699999999999998887 4455566666655   3457999999999999999999887632       355666


Q ss_pred             cchhhhhccCchHH
Q psy16321         76 GSELIQKYLGDGPK   89 (102)
Q Consensus        76 ~~~~~~~~~~~~~~   89 (102)
                      ..++...+.+.++.
T Consensus        98 ~~~l~~~~~g~~~~  111 (284)
T TIGR02880        98 RDDLVGQYIGHTAP  111 (284)
T ss_pred             HHHHhHhhcccchH
Confidence            65665555555443

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.26  E-value=2.5e-12  Score=93.72  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=45.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+.++  ..|.+...+.......... .+.+++|++|++
T Consensus        21 sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   87 (500)
T TIGR02633        21 DLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQEL   87 (500)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecc
Confidence            567899999999999999999999999999876  5677654432111111111 233588999875

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.25  E-value=2.1e-12  Score=88.53  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=35.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.+..
T Consensus        57 s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i   96 (282)
T cd03291          57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKH   96 (282)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            4668999999999999999999999999999888776654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.25  E-value=4.1e-12  Score=82.98  Aligned_cols=43  Identities=23%  Similarity=0.291  Sum_probs=37.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      ++++.+|+.+.+.||||||||||++.+||+..|..+.+..++.
T Consensus        25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r   67 (259)
T COG4525          25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR   67 (259)
T ss_pred             ceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCE
Confidence            4668899999999999999999999999999999877765544

>KOG0055|consensus

Probab=99.25  E-value=4.6e-12  Score=98.92  Aligned_cols=64  Identities=23%  Similarity=0.193  Sum_probs=56.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+|||||||||+++.|.++++|..|+|..++...+.......+.+++.|+|+|
T Consensus       373 sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QeP  436 (1228)
T KOG0055|consen  373 SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP  436 (1228)
T ss_pred             EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeech
Confidence            4678999999999999999999999999999999888877666556677778888999999997

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.25  E-value=1.7e-12  Score=94.70  Aligned_cols=64  Identities=14%  Similarity=0.155  Sum_probs=47.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.+...+....... ....+.+++|++|++
T Consensus        24 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~   88 (501)
T PRK11288         24 SFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQEL   88 (501)
T ss_pred             eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEech
Confidence            4678999999999999999999999999999988777765432111111 112234588998874

>PLN03232 ABC transporter C family member; Provisional

Probab=99.25  E-value=3.3e-12  Score=102.69  Aligned_cols=64  Identities=16%  Similarity=0.174  Sum_probs=55.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||+|||||||+++|.|++.|..|+|..++......+....|.++++++|++
T Consensus      1256 sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp 1319 (1495)
T PLN03232       1256 SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSP 1319 (1495)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCC
Confidence            3568899999999999999999999999999999888877665556666777888999999986

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.25  E-value=2.9e-12  Score=94.04  Aligned_cols=64  Identities=13%  Similarity=0.104  Sum_probs=45.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccchhhhhccCchH---HH-HHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSELIQKYLGDGP---KL-VRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~~~~~~~~~~~---~~-~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|++++     ..|.+...+.........+   .+ .+++|++|++
T Consensus        29 sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~  101 (529)
T PRK15134         29 SLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP  101 (529)
T ss_pred             EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence            467889999999999999999999999999876     4676654332111111111   11 3589999975

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.25  E-value=4.7e-12  Score=101.62  Aligned_cols=64  Identities=14%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc-hhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS-ELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|.|... +...........+..++|++|++
T Consensus       405 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~  469 (1466)
T PTZ00265        405 NFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDP  469 (1466)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccc
Confidence            46689999999999999999999999999999998888763 22223334445567799999985

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=7.3e-12  Score=91.09  Aligned_cols=74  Identities=12%  Similarity=0.156  Sum_probs=58.4

Q ss_pred             hhcCChHHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         27 LPLTHPEYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        27 ~~~~~~~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      |+-..+..+.+  +.+.+|+.++|+|+|||||||+++.++|.++++.|++..++.......+...+..+.++.|..
T Consensus       346 y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~  421 (573)
T COG4987         346 YPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRV  421 (573)
T ss_pred             cCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccch
Confidence            33344345554  568899999999999999999999999999999999987776555566666677788888864

>KOG0057|consensus

Probab=99.25  E-value=4.1e-12  Score=92.53  Aligned_cols=63  Identities=14%  Similarity=0.113  Sum_probs=52.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +++++.|+.++|+|+|||||||++|+|-++++ ..|+|..+.+..+.......|+.+++|||+.
T Consensus       372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~  434 (591)
T KOG0057|consen  372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS  434 (591)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence            57799999999999999999999999999998 6566555544446666667778899999985

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=5.9e-12  Score=85.14  Aligned_cols=64  Identities=20%  Similarity=0.196  Sum_probs=44.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEEccc--hhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRVVGS--ELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i~~~--~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++.     .+.+...  ++..........+..++|++|++
T Consensus        27 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~   97 (261)
T PRK14258         27 SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP   97 (261)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence            4778999999999999999999999999998864     3444332  22111111123345688888874

>KOG0741|consensus

Probab=99.24  E-value=3.1e-11  Score=88.13  Aligned_cols=90  Identities=36%  Similarity=0.620  Sum_probs=75.9

Q ss_pred             ccCChHHHHHH-HHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE-EEccchhhhhccCch
Q psy16321         10 KRGSLDVQIQE-IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL-RVVGSELIQKYLGDG   87 (102)
Q Consensus        10 ~i~g~~~~~~~-i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~-~i~~~~~~~~~~~~~   87 (102)
                      -||||+..... .++++......|+..+.+++..-++++|+||||||||.++|.|..+++...- -+++.++.++|++++
T Consensus       222 GIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeS  301 (744)
T KOG0741|consen  222 GIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGES  301 (744)
T ss_pred             ccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhccc
Confidence            37899877766 4667777788899999999999999999999999999999999999876533 367889999999999


Q ss_pred             HHHHHHccchhh
Q psy16321         88 PKLVRVALVPEV   99 (102)
Q Consensus        88 ~~~~~~~~~~q~   99 (102)
                      |.+.|-.|.-++
T Consensus       302 E~NvR~LFaDAE  313 (744)
T KOG0741|consen  302 EENVRKLFADAE  313 (744)
T ss_pred             HHHHHHHHHhHH
Confidence            999887775543

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.24  E-value=8.9e-12  Score=81.44  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=50.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV   99 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~   99 (102)
                      ++++++|+...|+||||+|||||+..++++.+.+.|++.............+..+++....|+
T Consensus        21 sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~   83 (252)
T COG4604          21 SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE   83 (252)
T ss_pred             eeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhh
Confidence            467899999999999999999999999999999988877665544444555666666666665

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.23  E-value=2.9e-12  Score=93.74  Aligned_cols=64  Identities=20%  Similarity=0.171  Sum_probs=46.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch-HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG-PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||||||||+++|+|+.+|..|.+...+......... ..+.+++|++|++
T Consensus       283 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~  347 (510)
T PRK15439        283 SLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDR  347 (510)
T ss_pred             eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCCh
Confidence            466889999999999999999999999999998888776543211111111 1233588998863

>PLN03130 ABC transporter C family member; Provisional

Probab=99.23  E-value=4.2e-12  Score=102.63  Aligned_cols=64  Identities=17%  Similarity=0.183  Sum_probs=56.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+|++|||||||+++|.+++.+..|.|..++......+....|.++++++|++
T Consensus      1259 s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp 1322 (1622)
T PLN03130       1259 SFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAP 1322 (1622)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCC
Confidence            4668999999999999999999999999999999888877766556667778888999999996

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=6.1e-12  Score=87.85  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=46.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC-----ccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-----ATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..     +..|.+...+....  .......+.+++|++|++
T Consensus       102 s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~  172 (329)
T PRK14257        102 NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP  172 (329)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC
Confidence            46789999999999999999999999999975     34566554332211  112234456799999985

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.23  E-value=2.6e-12  Score=94.83  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=36.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +|.+.+|+.++|+||||||||||+++|+|++.|..|.+..
T Consensus        27 s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~   66 (556)
T PRK11819         27 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARP   66 (556)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence            4678999999999999999999999999999988777754

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.22  E-value=6.8e-12  Score=84.13  Aligned_cols=60  Identities=22%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|.+++|++++++||||+||||++|+|.+++.++.++|...+-..    ..+.+.+++|.|.++
T Consensus        22 sf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~----~~~~~~rIGyLPEER   81 (300)
T COG4152          22 SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL----SQEIKNRIGYLPEER   81 (300)
T ss_pred             eeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch----hhhhhhhcccChhhh
Confidence            577899999999999999999999999999999988876543211    224456789988764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.22  E-value=2.7e-12  Score=93.68  Aligned_cols=64  Identities=22%  Similarity=0.192  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+....... ....+.+++|++|++
T Consensus       273 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~  337 (501)
T PRK11288        273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDR  337 (501)
T ss_pred             eEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCH
Confidence            4668899999999999999999999999999988887765432111111 112234588888875

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.22  E-value=7.4e-12  Score=80.63  Aligned_cols=41  Identities=27%  Similarity=0.143  Sum_probs=36.7

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      +.+.+|+.++|+||||||||||+++|+|+..|+.+++...+
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g   60 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG   60 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC
Confidence            57789999999999999999999999999999888776543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.22  E-value=4.4e-12  Score=92.69  Aligned_cols=64  Identities=17%  Similarity=0.118  Sum_probs=46.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-cEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-TFLRVVGSELIQKYLGD-GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||||||||+++|+|+.++ ..|.|...+........ ...+..++|++|++
T Consensus       282 sl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~  347 (506)
T PRK13549        282 SFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDR  347 (506)
T ss_pred             eeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcch
Confidence            567899999999999999999999999999884 77777654321111111 12233588999874

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.22  E-value=4.2e-12  Score=92.58  Aligned_cols=64  Identities=19%  Similarity=0.122  Sum_probs=45.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-cEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-TFLRVVGSELIQKYLGD-GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+| ..|.+...+........ ...+.+++|++|++
T Consensus       280 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~  345 (500)
T TIGR02633       280 SFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDR  345 (500)
T ss_pred             eeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcch
Confidence            466889999999999999999999999999985 57777654321111111 12234588999874

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PTZ00243 ABC transporter; Provisional

Probab=99.22  E-value=6e-12  Score=101.47  Aligned_cols=64  Identities=16%  Similarity=0.122  Sum_probs=55.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+|++|||||||+++|.+++.+..|.|..++......+..+.+.++++++|++
T Consensus      1330 sf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp 1393 (1560)
T PTZ00243       1330 SFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDP 1393 (1560)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCC
Confidence            4668899999999999999999999999999999888876665555566777888999999986

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.21  E-value=5.5e-12  Score=92.60  Aligned_cols=63  Identities=17%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++ ..|.|...+.........   ..+.+++|++|++
T Consensus       306 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~  371 (529)
T PRK15134        306 SFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP  371 (529)
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence            56788999999999999999999999999985 667765443211111111   1234689999975

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.21  E-value=8.7e-12  Score=91.36  Aligned_cols=64  Identities=22%  Similarity=0.198  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc-h--h--hhhcc--CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS-E--L--IQKYL--GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~-~--~--~~~~~--~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|+||||||||||+++|+|+.+|..|.+... +  .  .....  .....+.+++|++|++
T Consensus       304 s~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~  374 (520)
T TIGR03269       304 SLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY  374 (520)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc
Confidence            46689999999999999999999999999999888887652 1  1  01110  0112244689999974

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.21  E-value=7.8e-12  Score=100.37  Aligned_cols=64  Identities=9%  Similarity=0.023  Sum_probs=52.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----------------------------------------------
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----------------------------------------------   69 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----------------------------------------------   69 (102)
                      ++.+++|+.++|+|||||||||++++|.|+++|                                               
T Consensus      1188 sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1267 (1466)
T PTZ00265       1188 TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSG 1267 (1466)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            466899999999999999999999999999998                                               


Q ss_pred             -------cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         70 -------TFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        70 -------~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                             ..|.|..++...........+..++||+|++
T Consensus      1268 ~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep 1305 (1466)
T PTZ00265       1268 EDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP 1305 (1466)
T ss_pred             cccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCC
Confidence                   3556655544445556667778899999986

>KOG0743|consensus

Probab=99.21  E-value=3.6e-11  Score=85.98  Aligned_cols=73  Identities=23%  Similarity=0.378  Sum_probs=66.1

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .+|+.++=-.+.+++|.+.+..+.+..+.+.+.+.+-.++.+|+|||||||||++.|||+.++.+...+...+
T Consensus       198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~  270 (457)
T KOG0743|consen  198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE  270 (457)
T ss_pred             CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc
Confidence            6788888888999999999999999999999999999999999999999999999999999998877665543

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.1e-11  Score=80.15  Aligned_cols=46  Identities=20%  Similarity=0.310  Sum_probs=39.9

Q ss_pred             HHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         33 EYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        33 ~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .+|.+  |.+.+|+.+-|.||||+|||||+|+|+|++.|..++|...+
T Consensus        16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~   63 (209)
T COG4133          16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG   63 (209)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence            34444  56889999999999999999999999999999999887663

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.21  E-value=1.2e-11  Score=81.71  Aligned_cols=65  Identities=18%  Similarity=0.097  Sum_probs=52.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      ++++..++++.++|-||+|||||+++|+|.+.++.++|..............+...++-|||+|.
T Consensus        26 sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~   90 (263)
T COG1101          26 SLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPL   90 (263)
T ss_pred             ceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchh
Confidence            57789999999999999999999999999999998877766544344455555567888999873

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.20  E-value=9e-11  Score=88.16  Aligned_cols=87  Identities=39%  Similarity=0.702  Sum_probs=70.4

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      ...|+++.|++..++++.+.+.+ +..++.+..+....+++++|+||||||||++++++++....+++.+.+.++...+.
T Consensus       148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~  226 (644)
T PRK10733        148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV  226 (644)
T ss_pred             hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence            46799999999999999998887 45566667777666778999999999999999999999999988888877665555


Q ss_pred             CchHHHHH
Q psy16321         85 GDGPKLVR   92 (102)
Q Consensus        85 ~~~~~~~~   92 (102)
                      +....+.+
T Consensus       227 g~~~~~~~  234 (644)
T PRK10733        227 GVGASRVR  234 (644)
T ss_pred             cccHHHHH
Confidence            55444433

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.20  E-value=5e-12  Score=92.07  Aligned_cols=64  Identities=13%  Similarity=0.016  Sum_probs=45.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch-HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG-PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+...+......... ..+..++|++|++
T Consensus       268 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~  332 (491)
T PRK10982        268 SFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEER  332 (491)
T ss_pred             eEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCch
Confidence            466899999999999999999999999999998888776543211111111 1223477887763

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.20  E-value=7.3e-12  Score=100.86  Aligned_cols=64  Identities=16%  Similarity=0.190  Sum_probs=56.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+|++|||||||+++|.+++.+..|.|..++......+....|.++++++|++
T Consensus      1306 s~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp 1369 (1522)
T TIGR00957      1306 NVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDP 1369 (1522)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCC
Confidence            4568999999999999999999999999999999888877766556677778888999999996

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.20  E-value=9.2e-12  Score=90.61  Aligned_cols=64  Identities=13%  Similarity=0.043  Sum_probs=44.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-cEEEEccchhhh-hccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-TFLRVVGSELIQ-KYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-~~~~i~~~~~~~-~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.++ ..|.+...+... ........+.+++|++|++
T Consensus       280 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~  345 (490)
T PRK10938        280 SWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSL  345 (490)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHH
Confidence            466889999999999999999999999998654 356665443211 1011122345688988864

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.20  E-value=2.4e-11  Score=82.59  Aligned_cols=60  Identities=20%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccch
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVP   97 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (102)
                      +|++++|++++++||||+||||++|.+.|++.|..|.+...... ++....+.-+++++|+
T Consensus        44 sf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~-Pf~~~~~~~~~~~~v~  103 (325)
T COG4586          44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD-PFRRREEYLRSIGLVM  103 (325)
T ss_pred             eeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcC-cchhHHHHHHHHHHHh
Confidence            47799999999999999999999999999999998887655432 2223333334555544

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.20  E-value=5.3e-12  Score=92.72  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=35.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|..|.+..
T Consensus       339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~  378 (530)
T PRK15064        339 NLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKW  378 (530)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence            4668899999999999999999999999999988887754

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.19  E-value=4.7e-12  Score=93.40  Aligned_cols=40  Identities=18%  Similarity=0.181  Sum_probs=35.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..|..|.+..
T Consensus        25 s~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~   64 (552)
T TIGR03719        25 SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARP   64 (552)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence            4678999999999999999999999999999888777654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.19  E-value=2e-11  Score=77.03  Aligned_cols=63  Identities=16%  Similarity=0.081  Sum_probs=47.6

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .++++.+|+++.|.||||||||||+..++|.+.+.   .+++..++....  .....++++++.||++
T Consensus        21 ~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~--~lPa~qRq~GiLFQD~   86 (213)
T COG4136          21 VNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD--MLPAAQRQIGILFQDA   86 (213)
T ss_pred             eeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeecc--ccchhhhheeeeeccc
Confidence            36778999999999999999999999999988765   455555443222  2334566789999874

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.19  E-value=1.5e-11  Score=80.43  Aligned_cols=60  Identities=15%  Similarity=0.036  Sum_probs=45.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccch
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVP   97 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (102)
                      +|.+..|++++|.||||+||||++|.|+.++.|+.+.+.......... ....+++++.++
T Consensus        22 SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IGVl~   81 (245)
T COG4555          22 SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIGVLF   81 (245)
T ss_pred             eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcceec
Confidence            577889999999999999999999999999999988877655432211 223445566655

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.19  E-value=4.9e-12  Score=92.88  Aligned_cols=40  Identities=18%  Similarity=0.140  Sum_probs=35.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|+.|.+..
T Consensus        21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~   60 (530)
T PRK15064         21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL   60 (530)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence            4678999999999999999999999999999888777654

>KOG0056|consensus

Probab=99.18  E-value=1.6e-11  Score=89.21  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=55.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|.+.+|+.++++||||+||||++|.+-++.+...|.|..++...+.+..+..|..++.|||+.
T Consensus       558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt  621 (790)
T KOG0056|consen  558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDT  621 (790)
T ss_pred             eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcc
Confidence            4678999999999999999999999999999988777766665556777788888999999985

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.18  E-value=1.1e-11  Score=81.70  Aligned_cols=39  Identities=15%  Similarity=0.259  Sum_probs=35.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..+..|++.
T Consensus         7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~   45 (213)
T PRK15177          7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI   45 (213)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence            577899999999999999999999999999988877764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.18  E-value=4.9e-12  Score=94.53  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=36.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +|++.+|++++|+||||||||||+++|+|++.+..+.+..
T Consensus        36 s~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~   75 (623)
T PRK10261         36 SFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQC   75 (623)
T ss_pred             EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEE
Confidence            5778999999999999999999999999999888777654

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.17  E-value=1.7e-11  Score=81.30  Aligned_cols=56  Identities=14%  Similarity=0.048  Sum_probs=43.5

Q ss_pred             HHHhhhhcCChHHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         22 KESVELPLTHPEYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        22 ~~~~~~~~~~~~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      .+.+...+.....+.+  +++.+|+.++|+||||||||||+++|+|+.++..+++...
T Consensus        25 ~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~   82 (224)
T cd03220          25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR   82 (224)
T ss_pred             hhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence            3344445544445554  6789999999999999999999999999998887776543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.17  E-value=1.8e-11  Score=82.77  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=33.8

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      +.+|+.++|+||||||||||+++|+|+++|+.|.+.
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~   58 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD   58 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence            578999999999999999999999999999988884

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.17  E-value=1.2e-11  Score=89.78  Aligned_cols=66  Identities=15%  Similarity=0.144  Sum_probs=51.4

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhhc
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVRN  101 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~~  101 (102)
                      .+|.+.+|++.+|+|.||+|||||+|.|+|.+.|+.|++..+.....+....+ ....+..++|+.+
T Consensus        27 v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~   93 (500)
T COG1129          27 VSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS   93 (500)
T ss_pred             ceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechh
Confidence            35788999999999999999999999999999999888876654433333333 3345888888753

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.3e-11  Score=80.73  Aligned_cols=62  Identities=18%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC--ccEEEEcc--chhhhhccCchHH-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--ATFLRVVG--SELIQKYLGDGPK-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~~~~~i~~--~~~~~~~~~~~~~-~~~~~~~~q~~  100 (102)
                      |+.+.+|++.+|.||||||||||+++|+|...  .+.+.|..  .++..  ....|+ +..+...||.|
T Consensus        24 nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~--l~~~ERAr~GifLafQ~P   90 (251)
T COG0396          24 NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILE--LSPDERARAGIFLAFQYP   90 (251)
T ss_pred             ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCccccc--CCHhHHHhcCCEEeecCC
Confidence            57789999999999999999999999999764  44555544  44432  232333 33455667765

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.16  E-value=3e-11  Score=80.79  Aligned_cols=71  Identities=17%  Similarity=0.101  Sum_probs=48.5

Q ss_pred             hcCChHHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchh
Q psy16321         28 PLTHPEYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPE   98 (102)
Q Consensus        28 ~~~~~~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q   98 (102)
                      .+..+.+..+  +.+++++...|+||||||||||++.+++...|..+.+..-........- .+.++++++|..
T Consensus        40 ~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~  113 (257)
T COG1119          40 RRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSS  113 (257)
T ss_pred             EECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCH
Confidence            3444445554  5689999999999999999999999999998865444322111111111 567778888754

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.16  E-value=1.4e-11  Score=92.45  Aligned_cols=64  Identities=14%  Similarity=0.064  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHH----HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK----LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++++.+.+..++.........+.    ++.++|++|++
T Consensus        28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~   95 (648)
T PRK10535         28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRY   95 (648)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCc
Confidence            56789999999999999999999999999999988877655432222222221    34588999875

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.15  E-value=2.1e-11  Score=87.86  Aligned_cols=65  Identities=14%  Similarity=0.079  Sum_probs=51.4

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR  100 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~  100 (102)
                      -++++.+|++.+|+|.||+|||||+++|.|++.|+.|+|..+........ ....+..+++|+|++
T Consensus        23 V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF   88 (501)
T COG3845          23 VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF   88 (501)
T ss_pred             eeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecc
Confidence            35788999999999999999999999999999999888766543333322 334456799999975

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.15  E-value=1.5e-11  Score=90.93  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|++++|+||||||||||+++|+|+..|..|.|..
T Consensus       344 sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~  383 (556)
T PRK11819        344 SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI  383 (556)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence            3568899999999999999999999999999988887754

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.15  E-value=2.5e-11  Score=82.51  Aligned_cols=41  Identities=22%  Similarity=0.205  Sum_probs=36.2

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      .++.+.+|+.++|+||||||||||+++|+|++++..|.+..
T Consensus        43 is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546         43 ISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            35778999999999999999999999999999888776643

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.15  E-value=2.4e-11  Score=81.12  Aligned_cols=42  Identities=26%  Similarity=0.225  Sum_probs=37.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      +|++.+|+.++|+|+||||||||+|.|+|.++|+.|.+....
T Consensus        47 sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G   88 (249)
T COG1134          47 SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG   88 (249)
T ss_pred             eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc
Confidence            577899999999999999999999999999999988876543

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.14  E-value=1.5e-11  Score=90.84  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=35.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|++++|+||||||||||+++|+|+..|..|.|..
T Consensus       342 sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~  381 (552)
T TIGR03719       342 SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI  381 (552)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEE
Confidence            4568899999999999999999999999999988887754

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.13  E-value=5.3e-11  Score=80.54  Aligned_cols=43  Identities=21%  Similarity=0.236  Sum_probs=39.2

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .+|++.+|+.++|+|+|||||||+.|+|.++..|+.|+|.+.+
T Consensus        32 Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g   74 (268)
T COG4608          32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG   74 (268)
T ss_pred             eeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC
Confidence            4678999999999999999999999999999999988887654

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.12  E-value=3e-11  Score=88.53  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=35.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.  .|..|++..
T Consensus        20 s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~   61 (520)
T TIGR03269        20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY   61 (520)
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEE
Confidence            4678999999999999999999999999996  577777654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.12  E-value=3.3e-11  Score=89.71  Aligned_cols=40  Identities=28%  Similarity=0.192  Sum_probs=35.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|++++|+||||||||||+++|+|+++|..|.+..
T Consensus       359 s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~  398 (590)
T PRK13409        359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP  398 (590)
T ss_pred             ceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            3456899999999999999999999999999988777653

>PLN03073 ABC transporter F family; Provisional

Probab=99.11  E-value=1.9e-11  Score=92.61  Aligned_cols=39  Identities=23%  Similarity=0.426  Sum_probs=35.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.+.
T Consensus       529 sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~  567 (718)
T PLN03073        529 NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVF  567 (718)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEE
Confidence            456889999999999999999999999999998877765

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.11  E-value=5.2e-11  Score=82.17  Aligned_cols=66  Identities=17%  Similarity=0.099  Sum_probs=45.8

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhC-cc----EEEEccchhhhhccCchHH----HHHHccchhhhc
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS-AT----FLRVVGSELIQKYLGDGPK----LVRVALVPEVRN  101 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~-~~----~~~i~~~~~~~~~~~~~~~----~~~~~~~~q~~~  101 (102)
                      -+|++.+|+.++|+|.|||||||++++|.++++ +.    .+++.+.+...-...+.+.    ...++++||++.
T Consensus        24 vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~   98 (316)
T COG0444          24 VSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPM   98 (316)
T ss_pred             eeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCch
Confidence            367899999999999999999999999999997 32    3444433221111222221    235899999974

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.11  E-value=2.4e-11  Score=91.41  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=34.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++++++|+.++|+||||||||||+++|+|+.++..|.+.
T Consensus       472 sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~  510 (659)
T TIGR00954       472 SFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT  510 (659)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEe
Confidence            456889999999999999999999999999988777664

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.11  E-value=2.8e-11  Score=90.67  Aligned_cols=40  Identities=30%  Similarity=0.353  Sum_probs=35.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|+.|.+..
T Consensus       339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~  378 (635)
T PRK11147        339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC  378 (635)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence            4568899999999999999999999999999888777754

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.10  E-value=8.2e-11  Score=75.91  Aligned_cols=66  Identities=15%  Similarity=0.154  Sum_probs=49.0

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh---h--ccCchHHHH----HHccchhhhc
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ---K--YLGDGPKLV----RVALVPEVRN  101 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~---~--~~~~~~~~~----~~~~~~q~~~  101 (102)
                      .+|++.||+.++|+|.||||||||+++|++.+.|+.+.+.+.....   +  ...+.+++.    .-+||.|+|.
T Consensus        25 vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~   99 (258)
T COG4107          25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPR   99 (258)
T ss_pred             cceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeecCcc
Confidence            4678899999999999999999999999999999887776543211   1  123333332    2579998875

>KOG0055|consensus

Probab=99.10  E-value=7.6e-11  Score=92.29  Aligned_cols=68  Identities=19%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             HHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321         34 YYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        34 ~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      .+.+  +++.+|+.++|+|||||||||++..|-+.++|..|.|..++...+.......|.+++.|.|+|.
T Consensus      1005 Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~ 1074 (1228)
T KOG0055|consen 1005 VLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPV 1074 (1228)
T ss_pred             hhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCch
Confidence            4444  5688999999999999999999999999999998877766555577778888899999999973

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.10  E-value=2.1e-11  Score=91.45  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=35.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+..|..|.|..
T Consensus       332 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~  371 (638)
T PRK10636        332 KLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGL  371 (638)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence            3567899999999999999999999999999888777654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.10  E-value=4.2e-11  Score=96.44  Aligned_cols=63  Identities=17%  Similarity=0.122  Sum_probs=53.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+|++|||||||+++|.|++. ..|.|..++......+....+.++++++|++
T Consensus      1239 s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp 1301 (1490)
T TIGR01271      1239 SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKV 1301 (1490)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCC
Confidence            36689999999999999999999999999987 6677766665545666677888999999986

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.10  E-value=4e-11  Score=98.44  Aligned_cols=63  Identities=19%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|++++|.||||||||||+++|+|+..|+.|++...+..... ...+.++.++|++|+.
T Consensus      1959 Sf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~ 2021 (2272)
T TIGR01257      1959 CVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFD 2021 (2272)
T ss_pred             EEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccc
Confidence            46688999999999999999999999999999998887654322111 1223455799999974

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.09  E-value=9.7e-11  Score=81.09  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=48.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch----HHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG----PKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~q~~  100 (102)
                      ++++..|+++.|.|-||||||||+|++.++..|+.+++...+...-.....    -++.++++|||..
T Consensus        48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F  115 (386)
T COG4175          48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSF  115 (386)
T ss_pred             eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhh
Confidence            577899999999999999999999999999999977776543221222222    2345689999974

>PLN03211 ABC transporter G-25; Provisional

Probab=99.08  E-value=4.2e-11  Score=90.11  Aligned_cols=64  Identities=19%  Similarity=0.238  Sum_probs=46.5

Q ss_pred             HHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCcc--EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         33 EYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT--FLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        33 ~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .++++  +.+.+|+.++|+||||||||||+++|+|...+.  .|++..++...   . ...+++++|++|+.
T Consensus        82 ~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~---~-~~~~~~i~yv~Q~~  149 (659)
T PLN03211         82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP---T-KQILKRTGFVTQDD  149 (659)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC---c-hhhccceEEECccc
Confidence            34444  568899999999999999999999999998764  67665543211   1 12234688998874

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.07  E-value=7e-11  Score=88.63  Aligned_cols=40  Identities=30%  Similarity=0.238  Sum_probs=36.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +|.+.+|+.++|+||||||||||+++|+|++.|+.|.|..
T Consensus        21 s~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~   60 (638)
T PRK10636         21 TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTF   60 (638)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEe
Confidence            4678999999999999999999999999999888777654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.06  E-value=5.9e-10  Score=74.09  Aligned_cols=66  Identities=26%  Similarity=0.358  Sum_probs=44.9

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      .+++++++.|.++.++.++-.+......        -.+-..++|+||||+|||||++.||..++......++.
T Consensus        19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~   84 (233)
T PF05496_consen   19 RPKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGP   84 (233)
T ss_dssp             S-SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECC
T ss_pred             CCCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccch
Confidence            4679999999999999877655432111        12345789999999999999999999998876655553

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.05  E-value=1e-10  Score=87.68  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=35.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +|.+.+|+.++|+||||||||||+++|+|+..|+.|.|..
T Consensus        23 s~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~   62 (635)
T PRK11147         23 ELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIY   62 (635)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEe
Confidence            4678999999999999999999999999999888777654

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.05  E-value=1.1e-10  Score=87.25  Aligned_cols=61  Identities=21%  Similarity=0.131  Sum_probs=45.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|...+.   .|++..++...   .....++.++|++|++
T Consensus        45 s~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~---~~~~~~~~i~yv~Q~~  108 (617)
T TIGR00955        45 SGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI---DAKEMRAISAYVQQDD  108 (617)
T ss_pred             EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC---CHHHHhhhceeecccc
Confidence            3558899999999999999999999999987663   56565443321   1234456789999975

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.04  E-value=8.7e-11  Score=96.51  Aligned_cols=63  Identities=13%  Similarity=0.056  Sum_probs=47.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+..|+.|.+...+..... ...+.++.++|++|+.
T Consensus       950 sl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~ 1012 (2272)
T TIGR01257       950 NITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHN 1012 (2272)
T ss_pred             EEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCC
Confidence            46688999999999999999999999999999998877654321111 1223445689999874

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.04  E-value=6.1e-11  Score=77.45  Aligned_cols=64  Identities=17%  Similarity=0.261  Sum_probs=40.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE-Eccc---hhhhh--ccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR-VVGS---ELIQK--YLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~-i~~~---~~~~~--~~~~~~~~~~~~~~~q~~~  101 (102)
                      ++++.++ .++|+||||+|||||+++|++++++..+. +...   ++...  .........+++++||+++
T Consensus        17 ~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~   86 (197)
T cd03278          17 TIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSD   86 (197)
T ss_pred             eeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCC
Confidence            4567777 99999999999999999999987654221 1111   11110  0001122356889999864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.03  E-value=8.7e-11  Score=81.90  Aligned_cols=51  Identities=24%  Similarity=0.249  Sum_probs=37.4

Q ss_pred             EECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         48 LYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        48 l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      |+||||||||||+++|+|+.++..|.+...+....  .....+++++|++|++
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~--~~~~~~~~i~~v~q~~   51 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVT--NVPPHLRHINMVFQSY   51 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECC--CCCHHHCCEEEEecCc
Confidence            57999999999999999999998888765432111  1122345688999875

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.02  E-value=2.9e-10  Score=73.08  Aligned_cols=64  Identities=14%  Similarity=0.230  Sum_probs=46.6

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh--hhhccCc------hHHHHHHccchhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL--IQKYLGD------GPKLVRVALVPEV   99 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~--~~~~~~~------~~~~~~~~~~~q~   99 (102)
                      .+|+++.|++++|.||||+||||++|++-+-+.++.++|.....  ..+....      .-++..++||.|.
T Consensus        30 vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQF  101 (235)
T COG4778          30 VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQF  101 (235)
T ss_pred             eeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHH
Confidence            35778999999999999999999999999999999877754311  1111111      1234568898885

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.02  E-value=2.4e-10  Score=83.73  Aligned_cols=66  Identities=18%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc----EEEEccchhhhhccCchH----HHHHHccchhhhc
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT----FLRVVGSELIQKYLGDGP----KLVRVALVPEVRN  101 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~----~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~~~  101 (102)
                      -||++.+|+.++|+|.|||||||++++|.|+++..    .|+|.+.....-...+.+    +..+++++||++.
T Consensus        28 vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~  101 (539)
T COG1123          28 VSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM  101 (539)
T ss_pred             ceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence            46789999999999999999999999999998876    566654432111112211    2246999999863

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.01  E-value=6.5e-11  Score=70.46  Aligned_cols=28  Identities=32%  Similarity=0.439  Sum_probs=25.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ++.+.+++.++|.||||||||||++++.
T Consensus         9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           9 LVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            4567889999999999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.01  E-value=1.4e-10  Score=85.32  Aligned_cols=49  Identities=22%  Similarity=0.297  Sum_probs=40.1

Q ss_pred             cCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         29 LTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        29 ~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      +....++.  ++.+.+|+.++|+|+||+|||||+++|+|...++.+.|...
T Consensus        13 ~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~   63 (530)
T COG0488          13 YGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP   63 (530)
T ss_pred             eCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeec
Confidence            34444555  46688999999999999999999999999999888777543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.00  E-value=1.1e-09  Score=66.24  Aligned_cols=48  Identities=48%  Similarity=0.794  Sum_probs=38.8

Q ss_pred             eEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHH
Q psy16321         46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRV   93 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (102)
                      ++|+||+|+|||++++.++..+..+...++...+........+...+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~   48 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRD   48 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccc
Confidence            579999999999999999999999899998887765555555544443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0744|consensus

Probab=99.00  E-value=4.8e-10  Score=77.95  Aligned_cols=88  Identities=25%  Similarity=0.295  Sum_probs=59.1

Q ss_pred             ccccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCc---------cEEEEccc
Q psy16321          8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSA---------TFLRVVGS   77 (102)
Q Consensus         8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~---------~~~~i~~~   77 (102)
                      |+++.--...++.+.......+...+...+-. +...+.++++||||+|||+|+|++|..+..         ..++++..
T Consensus       141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh  220 (423)
T KOG0744|consen  141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH  220 (423)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence            55555555666666665544443333222222 455788999999999999999999997642         24567777


Q ss_pred             hhhhhccCchHHHHHHcc
Q psy16321         78 ELIQKYLGDGPKLVRVAL   95 (102)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~   95 (102)
                      .+.++|.+++-+.....|
T Consensus       221 sLFSKWFsESgKlV~kmF  238 (423)
T KOG0744|consen  221 SLFSKWFSESGKLVAKMF  238 (423)
T ss_pred             HHHHHHHhhhhhHHHHHH
Confidence            788888888776654443

>PLN03140 ABC transporter G family member; Provisional

Probab=99.00  E-value=1.6e-10  Score=92.91  Aligned_cols=60  Identities=23%  Similarity=0.207  Sum_probs=45.0

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +.+++|+.++|+||||||||||+++|+|.+++.   .|+|..++.....   ...+..++|++|+.
T Consensus       186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~---~~~~~~i~yv~Q~d  248 (1470)
T PLN03140        186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNE---FVPRKTSAYISQND  248 (1470)
T ss_pred             EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechh---hcccceeEEecccc
Confidence            458899999999999999999999999998876   6777655432111   11134688888863

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.99  E-value=7.6e-10  Score=71.77  Aligned_cols=76  Identities=13%  Similarity=0.095  Sum_probs=52.0

Q ss_pred             hhhcCChHHHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc--chhhhhc-----------cCchHHH
Q psy16321         26 ELPLTHPEYYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG--SELIQKY-----------LGDGPKL   90 (102)
Q Consensus        26 ~~~~~~~~~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~--~~~~~~~-----------~~~~~~~   90 (102)
                      ...+...+.++  ++....|+.+.|+|.|||||||++|||.-+..|..+.|..  .++..+.           ......+
T Consensus        13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R   92 (256)
T COG4598          13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR   92 (256)
T ss_pred             HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence            33444555555  3556789999999999999999999999999998666543  3332111           1112344


Q ss_pred             HHHccchhhhc
Q psy16321         91 VRVALVPEVRN  101 (102)
Q Consensus        91 ~~~~~~~q~~~  101 (102)
                      .+.++|||..|
T Consensus        93 s~L~mVFQ~FN  103 (256)
T COG4598          93 TRLGMVFQHFN  103 (256)
T ss_pred             HHhhHhhhhcc
Confidence            57899999865

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.99  E-value=3.8e-10  Score=81.88  Aligned_cols=60  Identities=12%  Similarity=0.133  Sum_probs=39.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE-EEc--cchhhhhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL-RVV--GSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~-~i~--~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      ++.+.+|+.++|+||||||||||++  +++..++.+ .+.  +.++..  ....+ ....-+|+|+.+
T Consensus        26 sl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~--~~~~a-i~~LR~VFQ~fn   88 (504)
T TIGR03238        26 NKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFS--PNKNA-METLDEIFDGFN   88 (504)
T ss_pred             ceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCC--CCHHH-HHHHHHHHHhhh
Confidence            5678899999999999999999999  566666544 344  333322  22222 112228888754

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.98  E-value=2.8e-10  Score=83.62  Aligned_cols=40  Identities=23%  Similarity=0.166  Sum_probs=35.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+.+|+.++|+||||+|||||+++|+|+..|..|.+..
T Consensus        44 SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I   83 (549)
T PRK13545         44 SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI   83 (549)
T ss_pred             EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence            5678899999999999999999999999999888777654

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.96  E-value=1.3e-09  Score=70.46  Aligned_cols=63  Identities=17%  Similarity=0.133  Sum_probs=45.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +..+..|+.+-++||||||||||+..+||+.+.. ++|.........+...+..++.+|..|+.
T Consensus        19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s-Gsi~~~G~~l~~~~~~eLArhRAYLsQqq   81 (248)
T COG4138          19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS-GSIQFAGQPLEAWSATELARHRAYLSQQQ   81 (248)
T ss_pred             ccccccceEEEEECCCCccHHHHHHHHhCCCCCC-ceEEECCcchhHHhHhHHHHHHHHHhhcc
Confidence            3467889999999999999999999999987654 44443333334445566667777877764

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.95  E-value=7.1e-10  Score=79.10  Aligned_cols=65  Identities=17%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc--chhhh-hccCchHHHHHHccchhhhcC
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG--SELIQ-KYLGDGPKLVRVALVPEVRNG  102 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~--~~~~~-~~~~~~~~~~~~~~~~q~~~~  102 (102)
                      ++++.+|+.++|+|.|||||||+.++|.+++++. |.|.+  .++.. ........++++..|||+|.|
T Consensus       307 sl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPyg  374 (534)
T COG4172         307 SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYG  374 (534)
T ss_pred             eeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCC
Confidence            4678899999999999999999999999998877 55554  44432 122334566789999999865

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=98.95  E-value=2e-10  Score=75.05  Aligned_cols=64  Identities=19%  Similarity=0.179  Sum_probs=48.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch-hhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE-LIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~-~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      +|.+.+|+.-+|+||||+||||++.+|.|..+|..+.+...+ .......+.+ .+..++--||.|
T Consensus        25 s~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~P   90 (249)
T COG4674          25 SFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKP   90 (249)
T ss_pred             EEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCC
Confidence            467899999999999999999999999999999988887654 3223333333 344577777765

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.95  E-value=3.6e-10  Score=90.68  Aligned_cols=59  Identities=20%  Similarity=0.136  Sum_probs=44.6

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +.+.+|+.++|+||||||||||+++|+|...   +..|++..++....    ...+++++|++|+.
T Consensus       784 ~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~  845 (1394)
T TIGR00956       784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQD  845 (1394)
T ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccc
Confidence            5578999999999999999999999999986   45576654432111    13455689999874

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.94  E-value=3e-10  Score=91.58  Aligned_cols=40  Identities=13%  Similarity=0.209  Sum_probs=35.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+++|+.++|+||||||||||+++|+|++++..|.+..
T Consensus       446 ~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~  485 (1490)
T TIGR01271       446 SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKH  485 (1490)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence            4668899999999999999999999999999998777654

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.94  E-value=3.4e-10  Score=91.48  Aligned_cols=40  Identities=23%  Similarity=0.157  Sum_probs=35.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++.+++|+.++|+||||||||||+++|+|++++..|.+..
T Consensus       658 sl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~  697 (1522)
T TIGR00957       658 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHM  697 (1522)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEE
Confidence            4668899999999999999999999999999988777654

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.92  E-value=8.1e-10  Score=78.69  Aligned_cols=43  Identities=23%  Similarity=0.226  Sum_probs=38.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      |+++..|+.+.|+|.|||||||+++.+.|++.|..|.|..++-
T Consensus       343 Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~  385 (546)
T COG4615         343 NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK  385 (546)
T ss_pred             eeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc
Confidence            5678899999999999999999999999999999888766543

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.92  E-value=7.4e-10  Score=71.32  Aligned_cols=29  Identities=24%  Similarity=0.318  Sum_probs=26.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++++.+|+.++|.||||||||||++++.+
T Consensus        15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            57789999999999999999999999863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.90  E-value=4e-10  Score=90.43  Aligned_cols=62  Identities=21%  Similarity=0.178  Sum_probs=43.5

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhh----CccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT----SATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +.+.+|+.++|+||||||||||+++|+|..    .+..|+|..++....... ...+..++|++|+.
T Consensus        82 ~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d  147 (1394)
T TIGR00956        82 GLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETD  147 (1394)
T ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEecccc
Confidence            457899999999999999999999999986    345677765543211111 11223478888863

>PRK04195 replication factor C large subunit; Provisional

Probab=98.90  E-value=5.1e-09  Score=76.45  Aligned_cols=66  Identities=35%  Similarity=0.479  Sum_probs=53.4

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .+++++++.|.+..++.|++.+.....         -.+...++|+||+|+||||++++++..+......++.++
T Consensus         9 rP~~l~dlvg~~~~~~~l~~~l~~~~~---------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd   74 (482)
T PRK04195          9 RPKTLSDVVGNEKAKEQLREWIESWLK---------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD   74 (482)
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence            478999999999999999988754221         123678999999999999999999999887777776544

>PRK13409 putative ATPase RIL; Provisional

Probab=98.90  E-value=1e-09  Score=81.84  Aligned_cols=37  Identities=24%  Similarity=0.189  Sum_probs=34.3

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      .+.+|++++|+||||+|||||+++|+|++.|+.|.+.
T Consensus        95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~  131 (590)
T PRK13409         95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE  131 (590)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence            4778999999999999999999999999999988875

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=98.90  E-value=5.3e-09  Score=71.93  Aligned_cols=60  Identities=27%  Similarity=0.383  Sum_probs=46.3

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      ++|+++.|.++.++.|+..+.......        .....++|+||+|+|||+|+++++..+......
T Consensus         1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~   60 (305)
T TIGR00635         1 KLLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKI   60 (305)
T ss_pred             CCHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            479999999999999988774322111        234568999999999999999999988765433

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=2.3e-09  Score=76.59  Aligned_cols=64  Identities=14%  Similarity=0.124  Sum_probs=53.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++++||+|+||||+++.+-+.+++..|.|..++...+.......++.++.|||+.
T Consensus       283 sf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDt  346 (497)
T COG5265         283 SFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDT  346 (497)
T ss_pred             cccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccc
Confidence            5678999999999999999999999999999999877765544445556667778899999984

>PLN03130 ABC transporter C family member; Provisional

Probab=98.88  E-value=7.5e-10  Score=89.88  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE-EEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF-LRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~-~~i~   75 (102)
                      ++.+++|+.++|+||+|||||||+++|.|++++.. |.+.
T Consensus       637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~  676 (1622)
T PLN03130        637 NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV  676 (1622)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEE
Confidence            46688999999999999999999999999999887 7764

>PTZ00243 ABC transporter; Provisional

Probab=98.87  E-value=8.4e-10  Score=89.36  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=35.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++.+++|+.++|+||||||||||+++|+|++.+..|.+.
T Consensus       680 sl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~  718 (1560)
T PTZ00243        680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW  718 (1560)
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE
Confidence            467899999999999999999999999999998877764

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.86  E-value=4.5e-09  Score=67.23  Aligned_cols=65  Identities=18%  Similarity=0.181  Sum_probs=45.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc--cchhh-hhccC---chHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV--GSELI-QKYLG---DGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~--~~~~~-~~~~~---~~~~~~~~~~~~q~~~  101 (102)
                      +++.+.|+.+.+.||||+|||||+|.+.-+.-|..+.+.  .+.+. +....   ..+.|+.+++|||.++
T Consensus        22 ~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~   92 (242)
T COG4161          22 TLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN   92 (242)
T ss_pred             eecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhc
Confidence            456788999999999999999999999887777655543  33221 11111   2345567999999864

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.85  E-value=8.8e-09  Score=72.64  Aligned_cols=65  Identities=14%  Similarity=0.193  Sum_probs=48.8

Q ss_pred             ccccc-ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-------cEEEEcc
Q psy16321          5 YKALK-KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-------TFLRVVG   76 (102)
Q Consensus         5 ~~~~~-~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-------~~~~i~~   76 (102)
                      +.-|+ ++.|+++.++++.+.+....      ...+ .+.+.++|.||||||||||+++|++.+..       ..+.+.+
T Consensus        46 y~~F~~~~~G~~~~i~~lv~~l~~~a------~g~~-~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~  118 (361)
T smart00763       46 YRFFDHDFFGMEEAIERFVNYFKSAA------QGLE-ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW  118 (361)
T ss_pred             ccccchhccCcHHHHHHHHHHHHHHH------hcCC-CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence            45566 99999999999887765432      1122 34578899999999999999999998755       4555555

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR00235 udk uridine kinase

Probab=98.83  E-value=3.9e-09  Score=69.22  Aligned_cols=29  Identities=24%  Similarity=0.257  Sum_probs=26.5

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +++..++|.||||||||||+++|++++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            56889999999999999999999998875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PLN03140 ABC transporter G family member; Provisional

Probab=98.83  E-value=1.6e-09  Score=87.37  Aligned_cols=61  Identities=16%  Similarity=0.076  Sum_probs=43.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|...+  ..|.+..++..   ......++.++|++|+.
T Consensus       900 s~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~---~~~~~~~~~igyv~Q~d  962 (1470)
T PLN03140        900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP---KKQETFARISGYCEQND  962 (1470)
T ss_pred             EEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc---CChHHhhhheEEEcccc
Confidence            345789999999999999999999999998653  34555433321   11123345679999874

>KOG0054|consensus

Probab=98.82  E-value=2.3e-09  Score=85.41  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=62.0

Q ss_pred             CChHHHHh--cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         30 THPEYYEE--MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        30 ~~~~~~~~--~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ..|...++  +.+.+++.++|+|..|||||||+.+|-++..+..|.|..+++.....+....|.+++.+||+|
T Consensus      1151 ~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdP 1223 (1381)
T KOG0054|consen 1151 NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDP 1223 (1381)
T ss_pred             CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCC
Confidence            33445554  568999999999999999999999999999999888888887778889999999999999997

>PLN03232 ABC transporter C family member; Provisional

Probab=98.82  E-value=7.9e-10  Score=89.28  Aligned_cols=36  Identities=28%  Similarity=0.265  Sum_probs=32.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      ++.+++|+.++|+||+|||||||+++|.|++++..+
T Consensus       637 nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G  672 (1495)
T PLN03232        637 NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAET  672 (1495)
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCC
Confidence            466899999999999999999999999999988754

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.82  E-value=5e-09  Score=67.75  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=31.2

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      +.+..++.++|+||+||||||++++|+++.++....+
T Consensus        20 ~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i   56 (186)
T cd01130          20 LAVEARKNILISGGTGSGKTTLLNALLAFIPPDERII   56 (186)
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence            3467899999999999999999999999987764443

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.79  E-value=2.4e-08  Score=71.75  Aligned_cols=76  Identities=24%  Similarity=0.410  Sum_probs=53.8

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh-hhccC
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI-QKYLG   85 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~-~~~~~   85 (102)
                      -|.|.++.++.+...+...+....+...+. -.++..++|+||+|||||+++++|+..++.++..++...+. ..+.+
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG   90 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   90 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCccc
Confidence            478888888888777765443332222221 11347899999999999999999999999988888766543 24545

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=8.2e-09  Score=77.58  Aligned_cols=64  Identities=27%  Similarity=0.333  Sum_probs=52.5

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      .+.-||+++++.|.+.+.......       --.|.++||+||||.|||+|.+.||.-++..++.+....+
T Consensus       323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv  386 (782)
T COG0466         323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV  386 (782)
T ss_pred             ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence            466799999999999887643321       1357899999999999999999999999999988876655

>CHL00206 ycf2 Ycf2; Provisional

Probab=98.78  E-value=1.2e-08  Score=83.04  Aligned_cols=52  Identities=21%  Similarity=0.511  Sum_probs=45.6

Q ss_pred             CChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh
Q psy16321         30 THPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ   81 (102)
Q Consensus        30 ~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~   81 (102)
                      ..+.....+++.++++++|+||||||||.|+|++|+....+++.+.++++..
T Consensus      1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206       1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred             cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence            3445667788899999999999999999999999999999999998887764

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.77  E-value=8.5e-09  Score=66.59  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=25.1

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ++.++|+|||||||||+++.|++...+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~   29 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQ   29 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence            5689999999999999999999987664

>KOG0059|consensus

Probab=98.76  E-value=4.9e-09  Score=81.31  Aligned_cols=64  Identities=17%  Similarity=0.104  Sum_probs=50.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.++++++.++.||||+||||+++++.|...++.|++...+... ........+..+||+||..
T Consensus       585 s~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d  649 (885)
T KOG0059|consen  585 SFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFD  649 (885)
T ss_pred             EEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchh
Confidence            467899999999999999999999999999999988776543322 2223344667899999973

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.76  E-value=1.5e-08  Score=65.11  Aligned_cols=29  Identities=34%  Similarity=0.515  Sum_probs=26.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +|+.++++|||||||||++++|++++.+.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~   30 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAK   30 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence            47899999999999999999999998874

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.76  E-value=6e-09  Score=76.84  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++.+.+|+.++|+||||+|||||++.|+|...+..|.+.
T Consensus       342 s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~  380 (530)
T COG0488         342 SFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVK  380 (530)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEE
Confidence            456889999999999999999999999998877766554

>TIGR00763 lon ATP-dependent protease La

Probab=98.76  E-value=1.9e-08  Score=77.19  Aligned_cols=61  Identities=28%  Similarity=0.349  Sum_probs=47.4

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.|++++++.|.+.+......       .-..+..++|+||||||||+++++|++.+...++.+...
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~  381 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLG  381 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCC
Confidence            4789999999988876543211       112456899999999999999999999998887777543

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>KOG0060|consensus

Probab=98.75  E-value=4.1e-09  Score=77.65  Aligned_cols=39  Identities=21%  Similarity=0.377  Sum_probs=33.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++.++.|+.++|+||||||||+|+|.++|+-+...|.+.
T Consensus       455 s~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~  493 (659)
T KOG0060|consen  455 SLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLT  493 (659)
T ss_pred             eeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEE
Confidence            356889999999999999999999999998776666553

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=98.74  E-value=3e-08  Score=69.16  Aligned_cols=62  Identities=29%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      +.+|+++.|.++.++.+...+......        -.+...++|+||+|+||||++++++..+......+
T Consensus        21 P~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~   82 (328)
T PRK00080         21 PKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRIT   82 (328)
T ss_pred             cCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence            578999999999999988777432111        12456789999999999999999999887654333

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.74  E-value=6.1e-09  Score=68.17  Aligned_cols=34  Identities=12%  Similarity=0.392  Sum_probs=29.6

Q ss_pred             HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        34 ~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...++++..++.++|+||||||||||+|+|++..
T Consensus        16 v~n~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          16 VANDIDMEKKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             ecceEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            4556777888999999999999999999999854

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PLN03073 ABC transporter F family; Provisional

Probab=98.73  E-value=5.8e-09  Score=79.35  Aligned_cols=34  Identities=24%  Similarity=0.232  Sum_probs=29.5

Q ss_pred             HHH--hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         34 YYE--EMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        34 ~~~--~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++.  ++.+.+|+.++|+||||||||||+++|+|..
T Consensus       192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~  227 (718)
T PLN03073        192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHA  227 (718)
T ss_pred             EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            444  4678999999999999999999999999853

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.72  E-value=4.5e-09  Score=70.76  Aligned_cols=28  Identities=25%  Similarity=0.310  Sum_probs=25.6

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +...+|+|||||||||++++|++++.+.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~   52 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGIT   52 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence            5689999999999999999999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0064|consensus

Probab=98.72  E-value=7.7e-09  Score=75.93  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=29.5

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +.+.+|-.++|.||||||||+|.|.|+|+-+...
T Consensus       503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~  536 (728)
T KOG0064|consen  503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYN  536 (728)
T ss_pred             EEecCCceEEEECCCCccHHHHHHHHhccCcccC
Confidence            5678899999999999999999999999865433

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.70  E-value=1.4e-08  Score=69.35  Aligned_cols=57  Identities=19%  Similarity=0.144  Sum_probs=39.0

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC-chHHHHHHccchhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG-DGPKLVRVALVPEVR  100 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~q~~  100 (102)
                      ..++|+||||||||||+++|++++.+..+.+...+....... ..+......+++|..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~  169 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD  169 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc
Confidence            689999999999999999999999988776654432111111 233334456666654

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.70  E-value=4.9e-08  Score=66.94  Aligned_cols=60  Identities=25%  Similarity=0.362  Sum_probs=48.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      .++.|++..|...++++++-.+.-....        -..-.+++|+||||.|||||+..||.++....
T Consensus        21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~   80 (332)
T COG2255          21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNL   80 (332)
T ss_pred             CcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence            3678999999999999888766543222        23457999999999999999999999987653

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.70  E-value=5e-08  Score=70.20  Aligned_cols=76  Identities=24%  Similarity=0.393  Sum_probs=53.9

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcCC-CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hccC
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLG   85 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i-~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~~~   85 (102)
                      .|.|.++.++.+...+...+....+...... ..+..++|+||+|+|||++++.|+..++.+++.++...+.. .|.+
T Consensus        16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG   93 (443)
T PRK05201         16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG   93 (443)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence            3889999999988777544332222112211 12478999999999999999999999999888887665543 3555

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.69  E-value=4.8e-08  Score=65.70  Aligned_cols=58  Identities=29%  Similarity=0.378  Sum_probs=47.8

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +...++++.|++.|++.|.+.....+..         .+...++|.|+.|||||+++|++...+...
T Consensus        22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G---------~pannvLL~G~rGtGKSSlVkall~~y~~~   79 (249)
T PF05673_consen   22 DPIRLDDLIGIERQKEALIENTEQFLQG---------LPANNVLLWGARGTGKSSLVKALLNEYADQ   79 (249)
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHHcC---------CCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence            4678999999999999998887543332         356789999999999999999999977553

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.67  E-value=1.4e-08  Score=75.48  Aligned_cols=41  Identities=24%  Similarity=0.349  Sum_probs=35.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+++|+.++|.||||||||||+|+|||+-+...|.+...
T Consensus       413 ~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P  453 (604)
T COG4178         413 NFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP  453 (604)
T ss_pred             eeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC
Confidence            45688999999999999999999999999987766666543

>KOG0061|consensus

Probab=98.67  E-value=2e-08  Score=75.34  Aligned_cols=59  Identities=20%  Similarity=0.173  Sum_probs=44.1

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCc---cEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA---TFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .+.+|+..++.||||||||||+++|+|....   ..|.+..++.   .......+...+||.|+.
T Consensus        52 ~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~~~~~~s~yV~QdD  113 (613)
T KOG0061|consen   52 TAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSRSFRKISGYVQQDD  113 (613)
T ss_pred             EEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchhhhhheeEEEcccc
Confidence            4789999999999999999999999998764   3566654442   122334556788999874

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.66  E-value=5.1e-08  Score=67.64  Aligned_cols=52  Identities=23%  Similarity=0.351  Sum_probs=41.6

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+.+|+++.|.+.+++.+...+..             .....++|+||+|+||||++++++..+.
T Consensus        10 ~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         10 RPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             CCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            367899999999999888876642             1112588999999999999999998764

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.65  E-value=8.4e-08  Score=66.28  Aligned_cols=63  Identities=30%  Similarity=0.366  Sum_probs=48.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .+++++++.|.+++++.++..+..           + ..+..++++||+|+||||++++++.....+...++..+
T Consensus        16 rP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~   78 (316)
T PHA02544         16 RPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD   78 (316)
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc
Confidence            478999999999999988877641           1 12346667899999999999999998776666665543

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.65  E-value=6.3e-08  Score=68.52  Aligned_cols=54  Identities=19%  Similarity=0.242  Sum_probs=43.8

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+++|+++.|.+..++.++..+...            .-+..++|+||+|+||||++++++..+.
T Consensus        10 yrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         10 WRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             hCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            46789999999999999888776431            1123578999999999999999998765

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.64  E-value=3.9e-08  Score=58.90  Aligned_cols=30  Identities=37%  Similarity=0.689  Sum_probs=25.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      +++|.|||||||||+++.|+..++...+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~   30 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISM   30 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence            478999999999999999999887655444

...

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.64  E-value=7.6e-08  Score=70.98  Aligned_cols=62  Identities=24%  Similarity=0.367  Sum_probs=48.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .+++.++|.....-+++++..+.-.+        .+-.+.++++|.||+||||||++++||..+.+...+
T Consensus        14 ~P~~~~eLavhkkKv~eV~~wl~~~~--------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E   75 (519)
T PF03215_consen   14 APKTLDELAVHKKKVEEVRSWLEEMF--------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE   75 (519)
T ss_pred             CCCCHHHhhccHHHHHHHHHHHHHHh--------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence            36778899999988888888876422        122345688999999999999999999998776544

>PLN03025 replication factor C subunit; Provisional

Probab=98.63  E-value=7.1e-08  Score=67.10  Aligned_cols=51  Identities=25%  Similarity=0.275  Sum_probs=41.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+++++++.|.+++++.|+..+..             .....++|+||+|+||||++++++..+
T Consensus         8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025          8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            477999999999999888776432             112258899999999999999999876

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.63  E-value=7e-08  Score=70.49  Aligned_cols=54  Identities=24%  Similarity=0.282  Sum_probs=43.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+++|+++.|.+..++.|+..+...            ..+..++|+||+|+||||++++++..+..
T Consensus         9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962          9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5789999999999988887765421            12335799999999999999999997654

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.63  E-value=6e-08  Score=72.93  Aligned_cols=59  Identities=15%  Similarity=0.277  Sum_probs=47.8

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .+++++++.|.+..+++++..+.-.        .+...+++.++|+||+||||||+++++++.+...
T Consensus        79 rP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~  137 (637)
T TIGR00602        79 KPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQ  137 (637)
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence            3678899999999999888776431        2334567889999999999999999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2004|consensus

Probab=98.63  E-value=1e-07  Score=72.01  Aligned_cols=64  Identities=25%  Similarity=0.362  Sum_probs=52.2

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      +|.=||+++++.|.+.+......       +-..|+++|++||||.|||+++|.||.-++..++.++...+
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~  474 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGM  474 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEecccc
Confidence            45678999999999888654322       12469999999999999999999999999999888876544

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.62  E-value=7.7e-09  Score=68.12  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=22.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +++.++|+|||||||||++++|+..
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~~~   51 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAITYA   51 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHheee
Confidence            3679999999999999999999964

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=98.62  E-value=9.4e-08  Score=73.44  Aligned_cols=62  Identities=24%  Similarity=0.312  Sum_probs=48.3

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      ++-|++++++.|.+.+......       .-..+..++|+||||+||||+++.|++.++.+++.+....
T Consensus       323 ~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~  384 (784)
T PRK10787        323 DHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGG  384 (784)
T ss_pred             hccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            4889999999998777643221       1136789999999999999999999999988877776443

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.61  E-value=9.3e-09  Score=67.49  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=25.7

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHH----hhhCccE
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVA----NQTSATF   71 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~----~~~~~~~   71 (102)
                      +.+.++ +++|+||||+|||||+++|.    |...+..
T Consensus        18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~   54 (204)
T cd03240          18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNS   54 (204)
T ss_pred             EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCccc
Confidence            455555 99999999999999999996    5544433

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=98.60  E-value=1.1e-07  Score=70.66  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=46.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+.-|+++-|+++.++.|.+.+....      ..++ ....+++|+||+|+|||||+++|+..+..
T Consensus        71 ry~fF~d~yGlee~ieriv~~l~~Aa------~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~  129 (644)
T PRK15455         71 RYPAFEEFYGMEEAIEQIVSYFRHAA------QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMER  129 (644)
T ss_pred             cccchhcccCcHHHHHHHHHHHHHHH------HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence            46678999999999999988774321      2222 35679999999999999999999997643

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.60  E-value=1e-07  Score=68.47  Aligned_cols=61  Identities=31%  Similarity=0.467  Sum_probs=46.7

Q ss_pred             ccccccccCChHHHHHH---HHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321          4 SYKALKKRGSLDVQIQE---IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~---i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      .+++++++.|.+..+..   |+..+..             .....++|+||+|+||||++++|+......+..+...
T Consensus         7 RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~   70 (413)
T PRK13342          7 RPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAV   70 (413)
T ss_pred             CCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence            46789999999988766   6665521             1223688999999999999999999888777666543

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.60  E-value=8.5e-08  Score=70.62  Aligned_cols=55  Identities=11%  Similarity=0.207  Sum_probs=45.4

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      |.+++|+++.|.+.+++.|++.+...            .-+..++|+||+|+||||++++++..+.+
T Consensus        10 yRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (509)
T PRK14958         10 WRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNC   64 (509)
T ss_pred             HCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            56889999999999999998877431            12336789999999999999999997754

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.60  E-value=8.4e-08  Score=57.42  Aligned_cols=35  Identities=34%  Similarity=0.668  Sum_probs=28.5

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGS   77 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~   77 (102)
                      +..++|+||+|+||||+++.++..+...   ...+..+
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~   39 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE   39 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence            5689999999999999999999988765   4444443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.58  E-value=4.5e-08  Score=65.12  Aligned_cols=24  Identities=38%  Similarity=0.571  Sum_probs=22.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHH
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      ++++.+|++++|+||||||||||+
T Consensus        15 sl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270          15 DVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             eeecCCCcEEEEEcCCCCCHHHHH
Confidence            678999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.58  E-value=8.8e-08  Score=51.67  Aligned_cols=34  Identities=24%  Similarity=0.469  Sum_probs=26.5

Q ss_pred             hcCCCC-CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         37 EMGIKP-PKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        37 ~~~i~~-~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .+.+.+ +...+|.||||+||||++.+|.-.+-+.
T Consensus        16 ~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~   50 (62)
T PF13555_consen   16 TIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN   50 (62)
T ss_pred             EEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence            344544 3589999999999999999998766543

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.58  E-value=4e-08  Score=64.19  Aligned_cols=30  Identities=13%  Similarity=0.365  Sum_probs=26.6

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++.+..++.++|+||||+||||++++|++
T Consensus        22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~   51 (202)
T cd03243          22 NDINLGSGRLLLITGPNMGGKSTYLRSIGL   51 (202)
T ss_pred             eeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence            346677889999999999999999999994

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.57  E-value=1.4e-07  Score=67.56  Aligned_cols=61  Identities=16%  Similarity=0.314  Sum_probs=47.2

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ..|++|+|.+.+++.|++.+.......   ..++...+..++|+||+|+|||++++.++..+.+
T Consensus         2 ~~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c   62 (394)
T PRK07940          2 SVWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQC   62 (394)
T ss_pred             ChhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            479999999999999999997654322   1223334567899999999999999999986543

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.56  E-value=1.3e-07  Score=69.24  Aligned_cols=53  Identities=25%  Similarity=0.375  Sum_probs=43.3

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.+++|+++.|.+.+++.|++.+...            .-+..++|+||+|+||||+++++|..+
T Consensus         7 yRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~L   59 (491)
T PRK14964          7 YRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCL   59 (491)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHH
Confidence            56789999999999999888765431            123578999999999999999999854

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.56  E-value=1.3e-07  Score=68.98  Aligned_cols=55  Identities=22%  Similarity=0.376  Sum_probs=44.3

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +.+++|+++.|.+.++..|+..+...            .-+..++|+||+|+||||++++++..+.+
T Consensus        12 yRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc   66 (484)
T PRK14956         12 YRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNC   66 (484)
T ss_pred             hCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            45789999999999999888776421            11335799999999999999999998765

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.56  E-value=3.7e-07  Score=55.15  Aligned_cols=36  Identities=61%  Similarity=1.042  Sum_probs=28.8

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGS   77 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~   77 (102)
                      .+..+.|+||+|+|||++++.++...   ......+...
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~   56 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS   56 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence            56789999999999999999999987   4445555443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.56  E-value=1.3e-07  Score=69.57  Aligned_cols=54  Identities=15%  Similarity=0.186  Sum_probs=44.1

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+++|+++.|.+.+++.|+..+...            ..+..++|+||+|+||||++++++..+.
T Consensus         8 yRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963          8 ARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             hCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46789999999999999888876531            1234569999999999999999998764

>KOG0989|consensus

Probab=98.56  E-value=1.5e-07  Score=65.10  Aligned_cols=52  Identities=29%  Similarity=0.398  Sum_probs=44.0

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +++|+++.|.+.+++.++..+..             .-.-..+++||||+|||+.+++.++.+.+
T Consensus        32 Pkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~   83 (346)
T KOG0989|consen   32 PKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNC   83 (346)
T ss_pred             CCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence            67899999999999998887643             12347899999999999999999998766

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=98.55  E-value=1.7e-07  Score=67.48  Aligned_cols=70  Identities=20%  Similarity=0.229  Sum_probs=47.5

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhc--CC-CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEM--GI-KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~--~i-~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      .+.|.++.++.+...+..+++........  .+ .+...++|+||+|||||+++++|+..++.++..++...+
T Consensus        72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l  144 (412)
T PRK05342         72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTL  144 (412)
T ss_pred             HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence            37888988888876664333221110000  11 134679999999999999999999988877777665543

>KOG0927|consensus

Probab=98.55  E-value=5.3e-08  Score=71.46  Aligned_cols=40  Identities=33%  Similarity=0.447  Sum_probs=35.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +|++.....++++||||||||||++.+.+.+.|..|.+..
T Consensus       410 ~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~  449 (614)
T KOG0927|consen  410 NFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSR  449 (614)
T ss_pred             hcccCcccceeEecCCCCchhhhHHHHhhccccccccccc
Confidence            3667889999999999999999999999999998777654

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.55  E-value=8e-08  Score=62.60  Aligned_cols=28  Identities=32%  Similarity=0.559  Sum_probs=25.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+|+.++|+||||||||||++.|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4789999999999999999999999875

>PRK08118 topology modulation protein; Reviewed

Probab=98.54  E-value=9e-08  Score=61.07  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=25.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      .+.|+|||||||||+++.|+..++.+.+++
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~l   32 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHL   32 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceec
Confidence            589999999999999999999887765444

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.54  E-value=7.3e-08  Score=64.34  Aligned_cols=25  Identities=28%  Similarity=0.408  Sum_probs=22.7

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +++++|+||||||||||+++|++++
T Consensus        23 ~~~~~i~GpNGsGKStll~ai~~~l   47 (243)
T cd03272          23 PKHNVVVGRNGSGKSNFFAAIRFVL   47 (243)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999999998653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.54  E-value=1.4e-07  Score=61.78  Aligned_cols=28  Identities=29%  Similarity=0.415  Sum_probs=25.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..+..++|.||||||||||++.|++.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4577899999999999999999999874

>KOG0065|consensus

Probab=98.54  E-value=3.4e-08  Score=78.25  Aligned_cols=69  Identities=23%  Similarity=0.233  Sum_probs=47.7

Q ss_pred             CChHHHHhcC--CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321         30 THPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEVR  100 (102)
Q Consensus        30 ~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~  100 (102)
                      .+.+++.+.+  +.||...+|.|+||+|||||++.||+-.  +.|.|.++-.++..... ..-++++|||.|+.
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~--t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~D  873 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK--TGGYIEGDILISGFPKDQETFARVSGYVEQQD  873 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc--ccceEEeEEEECCeeCchhhhccccceeeccc
Confidence            3344555544  6789999999999999999999999854  34455544333333322 45567899999874

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=98.53  E-value=2.3e-07  Score=66.16  Aligned_cols=60  Identities=33%  Similarity=0.505  Sum_probs=43.1

Q ss_pred             ccccccccCChHHHHHH---HHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321          4 SYKALKKRGSLDVQIQE---IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~---i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      .++++++++|.+..+.+   |+..+             .-..--...|.||||+||||++++|++..+..+..++.
T Consensus        19 RP~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA   81 (436)
T COG2256          19 RPKSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA   81 (436)
T ss_pred             CCCCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence            36788999987765532   22222             11223357889999999999999999998888777654

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.52  E-value=1.4e-07  Score=62.77  Aligned_cols=32  Identities=28%  Similarity=0.311  Sum_probs=28.1

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .+...++|.||||||||||++.|++.+++..+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g   62 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE   62 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence            45779999999999999999999999887644

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.52  E-value=2.2e-07  Score=68.45  Aligned_cols=55  Identities=18%  Similarity=0.246  Sum_probs=44.5

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +.+.+|+++.|.+.++..|+..+...            ..+..++|+||+|+||||++++++..+.+
T Consensus        15 yRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc   69 (507)
T PRK06645         15 YRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNC   69 (507)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            45789999999999999887765321            12357899999999999999999998764

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.52  E-value=1.4e-07  Score=61.27  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=21.8

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhC
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .++|.|||||||||++++|++++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999999873

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.52  E-value=9.3e-08  Score=68.53  Aligned_cols=63  Identities=14%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-----EEEE--ccchhhhhccCchHHH----HHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-----FLRV--VGSELIQKYLGDGPKL----VRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-----~~~i--~~~~~~~~~~~~~~~~----~~~~~~~q~~~  101 (102)
                      +|++.+|+.++|+|.||||||..+.+|.++++.+     .+.+  .+.++..  ..+.+.+    .+++++||+|.
T Consensus        30 sf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~--~se~~lr~iRG~~I~MIFQEPM  103 (534)
T COG4172          30 SFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA--ASERQLRGVRGNKIGMIFQEPM  103 (534)
T ss_pred             eeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc--CCHHHHhhhcccceEEEecccc
Confidence            5788999999999999999999999999998652     2333  3444432  2222222    25899999873

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.51  E-value=1.9e-07  Score=72.24  Aligned_cols=56  Identities=14%  Similarity=0.211  Sum_probs=45.2

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      |.+.+|++|.|.+.+++.|++.+...            .-...++|+||+|+||||++++++..+.+.
T Consensus        10 yRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         10 WRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            56789999999999999988776431            113456899999999999999999987653

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.51  E-value=2.3e-07  Score=69.92  Aligned_cols=55  Identities=15%  Similarity=0.217  Sum_probs=45.3

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +.+++|+++.|.+..++.|+..+...            .....++|+||+|+||||+++++|..+.+
T Consensus         9 yRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC   63 (702)
T PRK14960          9 YRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNC   63 (702)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            56789999999999999888877421            12357899999999999999999998754

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.51  E-value=1.1e-07  Score=60.80  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=23.7

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ++.++|+|||||||||++++|+..+..
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            357899999999999999999998654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.50  E-value=2.3e-07  Score=70.23  Aligned_cols=55  Identities=16%  Similarity=0.275  Sum_probs=45.8

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      |.+++|++|.|.+.+++.|++.+...            ..+..++|+||+|+||||++++++..+.+
T Consensus        10 YRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC   64 (709)
T PRK08691         10 WRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNC   64 (709)
T ss_pred             hCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence            56889999999999999998877531            12356899999999999999999997654

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.49  E-value=2.6e-07  Score=64.49  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=26.7

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .+++.++|+||||+||||++..||+.+.+.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~  141 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ  141 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence            457899999999999999999999987654

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.49  E-value=8.6e-08  Score=62.58  Aligned_cols=29  Identities=21%  Similarity=0.430  Sum_probs=25.3

Q ss_pred             HhcCCCCC-ceeEEECCCCCChhHHHHHHH
Q psy16321         36 EEMGIKPP-KGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        36 ~~~~i~~~-~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      .++.+.++ +.++|.||||+|||||++.|+
T Consensus        20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            35667787 479999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.48  E-value=2.9e-07  Score=68.08  Aligned_cols=55  Identities=18%  Similarity=0.293  Sum_probs=44.8

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      |.+++|+++.|.+.+++.|+..+...            ..+..++|+||+|+||||++++++..+.+
T Consensus        10 ~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (527)
T PRK14969         10 WRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNC   64 (527)
T ss_pred             hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            56789999999999999888876531            12345789999999999999999987754

>PRK07261 topology modulation protein; Provisional

Probab=98.47  E-value=2.1e-07  Score=59.55  Aligned_cols=30  Identities=23%  Similarity=0.500  Sum_probs=25.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      .++|+|+||||||||++.|+..++.+.+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~   31 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHL   31 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence            578999999999999999998876654443

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.47  E-value=1.4e-07  Score=60.24  Aligned_cols=26  Identities=31%  Similarity=0.558  Sum_probs=23.4

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      |+.++|+|||||||||+++.|++..+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            57899999999999999999999654

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.46  E-value=3.4e-07  Score=68.43  Aligned_cols=55  Identities=15%  Similarity=0.227  Sum_probs=44.6

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +.+++|++|.|.+.+++.|+..+...            .-+..++|+||+|+||||++++++..+.+
T Consensus         7 yRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   61 (584)
T PRK14952          7 YRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNC   61 (584)
T ss_pred             hCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            56789999999999999988876421            12235789999999999999999997654

>KOG0054|consensus

Probab=98.46  E-value=9.2e-08  Score=76.52  Aligned_cols=41  Identities=27%  Similarity=0.310  Sum_probs=35.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+++|+.++++||.|||||+|+.+|.|+++...|.+...
T Consensus       541 n~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~  581 (1381)
T KOG0054|consen  541 NFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVN  581 (1381)
T ss_pred             eEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEc
Confidence            45689999999999999999999999999999877766443

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.45  E-value=1.1e-07  Score=68.87  Aligned_cols=38  Identities=13%  Similarity=0.188  Sum_probs=33.4

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      .+.+|+.++|+||||+|||||+++|+++..++.+.+..
T Consensus       161 ~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~l  198 (450)
T PRK06002        161 PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIAL  198 (450)
T ss_pred             eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeee
Confidence            47889999999999999999999999998888665543

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.45  E-value=3.8e-07  Score=62.46  Aligned_cols=28  Identities=14%  Similarity=0.285  Sum_probs=24.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|.|+|||||||+++.|++++.+..+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~   28 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV   28 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCce
Confidence            4789999999999999999999877644

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.45  E-value=5e-07  Score=67.95  Aligned_cols=51  Identities=29%  Similarity=0.478  Sum_probs=39.2

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+|+++.|.+..++.+...+..             .....++|+|||||||||+++++.+...
T Consensus       150 p~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~  200 (615)
T TIGR02903       150 PRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAK  200 (615)
T ss_pred             cCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            56888898888877766544321             2345799999999999999999998763

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.45  E-value=1.9e-07  Score=64.87  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=32.2

Q ss_pred             HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      +-++.+..++.+++.||+||||||++++|++++++...
T Consensus       136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~  173 (308)
T TIGR02788       136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDER  173 (308)
T ss_pred             HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcccc
Confidence            34556788999999999999999999999999876543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.44  E-value=4.2e-07  Score=67.45  Aligned_cols=55  Identities=16%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +.+.+|+++.|.+..++.|...+...            .....++|+||+|+||||++++++..+.+
T Consensus        10 yRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         10 YRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             HCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45789999999999999888776431            11234789999999999999999997653

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.44  E-value=4e-07  Score=68.63  Aligned_cols=55  Identities=15%  Similarity=0.234  Sum_probs=45.8

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      |..++|++|.|.+.+++.|++.+....            -...++|+||+|+||||++++++..+.+
T Consensus        10 YRPqtFddVIGQe~vv~~L~~al~~gR------------LpHA~LFtGP~GvGKTTLAriLAkaLnC   64 (700)
T PRK12323         10 WRPRDFTTLVGQEHVVRALTHALEQQR------------LHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (700)
T ss_pred             hCCCcHHHHcCcHHHHHHHHHHHHhCC------------CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            567899999999999999988875321            1346789999999999999999998765

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.44  E-value=2.5e-07  Score=59.12  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=26.7

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      +++.+.|.|+|||||||+++.|+.........+
T Consensus         1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~   33 (175)
T cd00227           1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHF   33 (175)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence            367899999999999999999998765544433

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=98.44  E-value=4e-07  Score=59.91  Aligned_cols=48  Identities=23%  Similarity=0.391  Sum_probs=34.3

Q ss_pred             ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321          8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus         8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      |.+|.|.+..+..+.-...               -+..++++||+|+|||++++.+..++++-
T Consensus         2 f~dI~GQe~aKrAL~iAAa---------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l   49 (206)
T PF01078_consen    2 FSDIVGQEEAKRALEIAAA---------------GGHHLLLIGPPGTGKTMLARRLPSLLPPL   49 (206)
T ss_dssp             TCCSSSTHHHHHHHHHHHH---------------CC--EEEES-CCCTHHHHHHHHHHCS--C
T ss_pred             hhhhcCcHHHHHHHHHHHc---------------CCCCeEEECCCCCCHHHHHHHHHHhCCCC
Confidence            6788998877776643321               24589999999999999999999998763

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.43  E-value=4.7e-07  Score=68.01  Aligned_cols=55  Identities=13%  Similarity=0.260  Sum_probs=44.6

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      |.+++|+++.|.+.+++.|++.+...            .-+..++|+||+|+||||++++++..+.+
T Consensus        10 yRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         10 YRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             HCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            56789999999999999888876532            11345789999999999999999987754

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=98.42  E-value=6.9e-07  Score=64.34  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=44.3

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHH--Hh--cCC-CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYY--EE--MGI-KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~--~~--~~i-~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .+.|.++.++.+...+...++.-...  ..  -++ .....++|.||+|+|||+++++|+..++.++..++...
T Consensus        78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~  151 (413)
T TIGR00382        78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATT  151 (413)
T ss_pred             eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhh
Confidence            35788888887776663322221110  00  011 12457999999999999999999998876665555443

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.42  E-value=5.9e-07  Score=61.85  Aligned_cols=52  Identities=27%  Similarity=0.347  Sum_probs=41.8

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+++|+++.|.+++++.++..+...             ....++|+||+|+||||++++++..+.
T Consensus        12 rP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         12 RPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            3678999999999999888776421             112479999999999999999998753

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.42  E-value=4.4e-07  Score=57.27  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=28.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      +++..+.|+||+||||||+++.|+..++...+.
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d   34 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID   34 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence            467789999999999999999999988765543

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.41  E-value=5.2e-07  Score=68.97  Aligned_cols=55  Identities=15%  Similarity=0.221  Sum_probs=44.6

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      |..++|++|.|.+.+++.|++.+...            .-...++|+||+|+||||++++++..+.+
T Consensus        10 YRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnC   64 (830)
T PRK07003         10 WRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNC   64 (830)
T ss_pred             hCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            56789999999999999988876421            11345789999999999999999997754

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.41  E-value=4e-07  Score=68.67  Aligned_cols=55  Identities=15%  Similarity=0.267  Sum_probs=44.5

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      |.+++|++|.|.+.+++.|+..+...            .-...++|+||+|+||||++++++..+.+
T Consensus        10 yRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c   64 (647)
T PRK07994         10 WRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNC   64 (647)
T ss_pred             hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            56789999999999999888766431            11234789999999999999999998765

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.40  E-value=4.3e-07  Score=55.75  Aligned_cols=33  Identities=45%  Similarity=0.688  Sum_probs=27.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      .++|+||+|+|||++++.++..+......+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~   33 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCS   33 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-T
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEec
Confidence            378999999999999999999997766555443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.39  E-value=2.1e-07  Score=61.47  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++++|+||||+||||++++|...
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~~~   48 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSMLFV   48 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            79999999999999999999843

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=7e-07  Score=66.82  Aligned_cols=54  Identities=17%  Similarity=0.305  Sum_probs=43.8

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+.+|+++.|.+..++.|+..+...            ..+..++|+||+|+||||++++++..+.
T Consensus        10 yRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~   63 (585)
T PRK14950         10 WRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVN   63 (585)
T ss_pred             hCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999888776431            1234578999999999999999998764

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=7.8e-07  Score=63.71  Aligned_cols=54  Identities=22%  Similarity=0.299  Sum_probs=42.9

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+.+|++|.|.+.+++.|+..+...            .-+..++|+||+|+||||++++++..+.+
T Consensus        11 RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955         11 RPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             CCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            4678999999999998887766420            12335889999999999999999997754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
4b4t_I	437	Near-Atomic Resolution Structural Model Of The Yeas		1e-37
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		3e-29
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		9e-29
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		3e-27
4b4t_H	467	Near-Atomic Resolution Structural Model Of The Yeas		3e-26
4b4t_M	434	Near-Atomic Resolution Structural Model Of The Yeas		3e-23
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		4e-21
3cf1_A	806	Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len		2e-20
1r7r_A	816	The Crystal Structure Of Murine P97VCP AT 3.6A Leng		2e-20
1e32_A	458	Structure Of The N-Terminal Domain And The D1 Aaa D		2e-20
3hu3_A	489	Structure Of P97 N-D1 R155h Mutant In Complex With		2e-20
3hu1_A	489	Structure Of P97 N-D1 R95g Mutant In Complex With A		2e-20
3hu2_A	489	Structure Of P97 N-D1 R86a Mutant In Complex With A		2e-20
3b9p_A	297	Spastin Length = 297		6e-17
3cf0_A	301	Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH		2e-16
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		4e-15
3vfd_A	389	Human Spastin Aaa Domain Length = 389		7e-15
2x8a_A	274	Human Nuclear Valosin Containing Protein Like (Nvl)		3e-14
2ce7_A	476	Edta Treated Length = 476		3e-14
2qp9_X	355	Crystal Structure Of S.Cerevisiae Vps4 Length = 355		5e-14
2rko_A	331	Crystal Structure Of The Vps4p-Dimer Length = 331		5e-14
3eih_A	340	Crystal Structure Of S.Cerevisiae Vps4 In The Prese		7e-14
3eie_A	322	Crystal Structure Of S.Cerevisiae Vps4 In The So4-B		7e-14
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		1e-13
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		2e-13
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		8e-13
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		1e-11
2zam_A	444	Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt		1e-11
1xwi_A	322	Crystal Structure Of Vps4b Length = 322		1e-11
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		2e-11
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		2e-11
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		5e-11
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		5e-11

>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score =  151 bits (381), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 73/81 (90%), Positives = 76/81 (93%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ QIQEIKESVELPLTHPE YEEMGIKPPKGVILYG PGTGKTLLAKAVANQTSATF
Sbjct: 185 GGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244
Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           LR+VGSELIQKYLGDGP+L R
Sbjct: 245 LRIVGSELIQKYLGDGPRLCR 265

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 73/81 (90%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ Q+QEI+E VELPL HPE +E++GI+PPKG++LYGPPGTGKTLLAKAVA +T+ATF
Sbjct: 20  GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF 79
Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +RVVGSEL++K++G+G  LV+
Sbjct: 80  IRVVGSELVKKFIGEGASLVK 100

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score =  121 bits (304), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 67/81 (82%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD+Q QEI+E+VELPL   + YE++GI PP+GV+LYGPPGTGKT+L KAVAN T A F
Sbjct: 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234
Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +RV GSE + KYLG+GP++VR
Sbjct: 235 IRVNGSEFVHKYLGEGPRMVR 255

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/85 (62%), Positives = 67/85 (78%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L  QI+EIKE +ELP+ HPE +E +GI  PKGVILYGPPGTGKTLLA+AVA+ T   F
Sbjct: 151 GGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF 210
Query: 72  LRVVGSELIQKYLGDGPKLVRVALV 96
           +RV G+EL+QKY+G+G ++VR   V
Sbjct: 211 IRVSGAELVQKYIGEGSRMVRELFV 235

>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 67/81 (82%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G    QI++++E VELPL  PE +  +GI PPKG++LYGPPGTGKTL A+AVAN+T ATF
Sbjct: 212 GGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF 271
Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +RV+GSEL+QKY+G+G ++VR
Sbjct: 272 IRVIGSELVQKYVGEGARMVR 292

>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434

Iteration: 1
 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 65/84 (77%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G LD QI+E+ E++ LP+   + +++MGI+ PKG ++YGPPGTGKTLLA+A A QT+ATF
Sbjct: 184 GGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243
Query: 72  LRVVGSELIQKYLGDGPKLVRVAL 95
           L++   +L+Q Y+G+G KLVR A 
Sbjct: 244 LKLAAPQLVQMYIGEGAKLVRDAF 267

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 61/81 (75%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L  QI+E++E +ELPL +PE ++ +GIKPPKGV+LYGPPGTGKTLLAKAVA    A F
Sbjct: 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243
Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +    S ++ KY+G+  +++R
Sbjct: 244 IFSPASGIVDKYIGESARIIR 264

>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G    Q+ +IKE VELPL HP  ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72  LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
             + G E++ K  G+    +R A     +N 
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297

>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G    Q+ +IKE VELPL HP  ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72  LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
             + G E++ K  G+    +R A     +N 
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297

>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G    Q+ +IKE VELPL HP  ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72  LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
             + G E++ K  G+    +R A     +N 
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297

>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G    Q+ +IKE VELPL HP  ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72  LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
             + G E++ K  G+    +R A     +N 
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297

>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G    Q+ +IKE VELPL HP  ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72  LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
             + G E++ K  G+    +R A     +N 
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297

>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G    Q+ +IKE VELPL HP  ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266
Query: 72  LRVVGSELIQKYLGDGPKLVRVALVPEVRNG 102
             + G E++ K  G+    +R A     +N 
Sbjct: 267 FLINGPEIMSKLAGESESNLRKAFEEAEKNA 297

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 15  DVQIQEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLLAKAVANQTSATFLR 73
           DV  Q ++E V LP   PE +   G++ P KG++L+GPPG GKTLLA+AVA + SATFL 
Sbjct: 27  DVAKQALQEMVILPSVRPELF--TGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLN 84
Query: 74  VVGSELIQKYLGDGPKLVR 92
           +  + L  KY+GDG KLVR
Sbjct: 85  ISAASLTSKYVGDGEKLVR 103

>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
          G L+   +E++E V+ P+ HP+ + + G+ P KGV+ YGPPG GKTLLAKA+AN+  A F
Sbjct: 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
          + + G EL+  + G+    VR
Sbjct: 78 ISIKGPELLTMWFGESEANVR 98

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 21  IKESVELPLTHPEYYEEMGIK-PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79
           IKE V  P+  P+ +   G++ PPKG++L+GPPGTGKTL+ K +A+Q+ ATF  +  S L
Sbjct: 96  IKEIVVWPMLRPDIF--TGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL 153
Query: 80  IQKYLGDGPKLVRV 93
             K++G+G K+VR 
Sbjct: 154 TSKWVGEGEKMVRA 167

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 3/80 (3%)
Query: 15  DVQIQEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLLAKAVANQTSATFLR 73
           D+  Q ++E V LP   PE +   G++ P +G++L+GPPG GKT+LAKAVA +++ATF  
Sbjct: 121 DLAKQALQEIVILPSLRPELF--TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178
Query: 74  VVGSELIQKYLGDGPKLVRV 93
           +  + L  KY+G+G KLVR 
Sbjct: 179 ISAASLTSKYVGEGEKLVRA 198

>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
          G+L+   +E+  ++  P+ +P+ ++ +G+  P GV+L GPPG GKTLLAKAVAN++   F
Sbjct: 13 GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNF 72
Query: 72 LRVVGSELIQKYLGDGPKLVR 92
          + V G EL+  Y+G+  + VR
Sbjct: 73 ISVKGPELLNMYVGESERAVR 93

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 8  LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67
           K  G  +  I+E+KE VE  L  P  +  +G + PKG++L GPPGTGKTLLA+AVA + 
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73
Query: 68 SATFLRVVGSELIQKYLGDGPKLVR 92
          +  F  + GS+ ++ ++G G   VR
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVR 98

>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           + +KE+V LP+  P  ++    KP  G++LYGPPGTGK+ LAKAVA + ++TF  V  S+
Sbjct: 61  EALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 119
Query: 79  LIQKYLGDGPKLVR 92
           L+ K++G+  KLV+
Sbjct: 120 LVSKWMGESEKLVK 133

>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           + +KE+V LP+  P  ++    KP  G++LYGPPGTGK+ LAKAVA + ++TF  V  S+
Sbjct: 37  EALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 95
Query: 79  LIQKYLGDGPKLVR 92
           L+ K++G+  KLV+
Sbjct: 96  LVSKWMGESEKLVK 109

>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           + +KE+V LP+  P  ++    KP  G++LYGPPGTGK+ LAKAVA + ++TF  V  S+
Sbjct: 46  EALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 104
Query: 79  LIQKYLGDGPKLVR 92
           L+ K++G+  KLV+
Sbjct: 105 LVSKWMGESEKLVK 118

>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322

Iteration: 1
 Score = 72.0 bits (175), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           + +KE+V LP+  P  ++    KP  G++LYGPPGTGK+ LAKAVA + ++TF  V  S+
Sbjct: 28  EALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86
Query: 79  LIQKYLGDGPKLVR 92
           L+ K++G+  KLV+
Sbjct: 87  LVSKWMGESEKLVK 100

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 1/85 (1%)
Query: 8  LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67
           K  G  +  I+E+KE VE  L  P  +  +G + PKG++L GPPGTG TLLA+AVA + 
Sbjct: 15 FKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEA 73
Query: 68 SATFLRVVGSELIQKYLGDGPKLVR 92
          +  F  + GS+ ++ ++G G   VR
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVR 98

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
          +E+ E V+  L +PE Y  +G K PKGV+L GPPGTGKTLLAKAVA +    F  + GS 
Sbjct: 21 EEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSS 79
Query: 79 LIQKYLGDGPKLVR 92
           I+ ++G G   VR
Sbjct: 80 FIEMFVGLGASRVR 93

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
          +E+ E VE  L  P  ++++G K PKGV++ GPPGTGKTLLAKA+A +    F  + GS+
Sbjct: 22 EEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80
Query: 79 LIQKYLGDGPKLVR 92
           ++ ++G G   VR
Sbjct: 81 FVEMFVGVGASRVR 94

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 20  EIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL 79
           E++E V+  L  PE + ++G K PKG +L GPPG GKTLLAKAVA +    FL + G+E 
Sbjct: 17  EVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEF 75
Query: 80  IQKYLGDGPKLVRVALVPEVR 100
           ++   G G   VR +L  E R
Sbjct: 76  VEVIGGLGAARVR-SLFKEAR 95

>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 19  QEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLLAKAVANQ-TSATFLRVVG 76
           + +KE+V LP+  P  +   G + P +G++L+GPPGTGK+ LAKAVA +  ++TF  +  
Sbjct: 144 EALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201
Query: 77  SELIQKYLGDGPKLVR 92
           S+L+ K+LG+  KLV+
Sbjct: 202 SDLVSKWLGESEKLVK 217

>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/76 (43%), Positives = 53/76 (69%), Gaps = 4/76 (5%)
Query: 19 QEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLLAKAVANQ-TSATFLRVVG 76
          + +KE+V LP+  P  +   G + P +G++L+GPPGTGK+ LAKAVA +  ++TF  +  
Sbjct: 22 EALKEAVILPIKFPHLF--TGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79
Query: 77 SELIQKYLGDGPKLVR 92
          S+L+ K+LG+  KLV+
Sbjct: 80 SDLVSKWLGESEKLVK 95

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 29  LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
           L +P  + EMG + PKGV+L GPPG GKT LA+AVA +    F+   GS+ ++ ++G G 
Sbjct: 59  LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 89  KLVR 92
             VR
Sbjct: 119 ARVR 122

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 29 LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
          L +P  + EMG + PKGV+L GPPG GKT LA+AVA +    F+   GS+ ++ ++G G 
Sbjct: 35 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94
Query: 89 KLVR 92
            VR
Sbjct: 95 ARVR 98

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 29  LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
           L +P  + EMG + PKGV+L GPPG GKT LA+AVA +    F+   GS+ ++ ++G G 
Sbjct: 50  LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109
Query: 89  KLVR 92
             VR
Sbjct: 110 ARVR 113

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/64 (45%), Positives = 41/64 (64%)
Query: 29  LTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
           L +P  + EMG + PKGV+L GPPG GKT LA+AVA +    F+   GS+ ++ ++G G 
Sbjct: 59  LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 89  KLVR 92
             VR
Sbjct: 119 ARVR 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	1e-55
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	5e-37
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	4e-36
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	5e-36
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	3e-34
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	1e-28
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	6e-05
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	7e-33
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	1e-32
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	7e-32
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	3e-31
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	1e-30
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	2e-30
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	8e-28
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	3e-25
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	2e-24
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	8e-22
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	1e-19
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	3e-19
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	3e-19
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	4e-19
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	5e-17
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	5e-17
3pvs_A	447	Replication-associated recombination protein A; ma	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	3e-08
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	5e-08
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	7e-08
2qgz_A	308	Helicase loader, putative primosome component; str	1e-07
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	2e-07
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	2e-06
2chq_A	319	Replication factor C small subunit; DNA-binding pr	5e-06
2chg_A	226	Replication factor C small subunit; DNA-binding pr	5e-06
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	1e-05
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	1e-05
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	2e-05
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	2e-05
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	3e-05
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	4e-05
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	4e-05
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	2e-04
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	4e-04
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	4e-04
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	4e-04
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	5e-04
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	5e-04
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	6e-04
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	6e-04
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	7e-04
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	8e-04
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	8e-04

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score =  172 bits (439), Expect = 1e-55
 Identities = 55/81 (67%), Positives = 73/81 (90%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G L+ Q+QEI+E VELPL HPE +E++GI+PPKG++LYGPPGTGKTLLAKAVA +T+ATF
Sbjct: 20  GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF 79

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
           +RVVGSEL++K++G+G  LV+
Sbjct: 80  IRVVGSELVKKFIGEGASLVK 100

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score =  125 bits (316), Expect = 5e-37
 Identities = 36/81 (44%), Positives = 54/81 (66%)

Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
          G L+   +E++E V+ P+ HP+ + + G+ P KGV+ YGPPG GKTLLAKA+AN+  A F
Sbjct: 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 77

Query: 72 LRVVGSELIQKYLGDGPKLVR 92
          + + G EL+  + G+    VR
Sbjct: 78 ISIKGPELLTMWFGESEANVR 98

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score =  122 bits (308), Expect = 4e-36
 Identities = 34/81 (41%), Positives = 55/81 (67%)

Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
          G+L+   +E+  ++  P+ +P+ ++ +G+  P GV+L GPPG GKTLLAKAVAN++   F
Sbjct: 13 GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNF 72

Query: 72 LRVVGSELIQKYLGDGPKLVR 92
          + V G EL+  Y+G+  + VR
Sbjct: 73 ISVKGPELLNMYVGESERAVR 93

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score =  126 bits (318), Expect = 5e-36
 Identities = 41/81 (50%), Positives = 58/81 (71%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           G    Q+ +IKE VELPL HP  ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 266

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
             + G E++ K  G+    +R
Sbjct: 267 FLINGPEIMSKLAGESESNLR 287

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score =  114 bits (288), Expect = 7e-33
 Identities = 41/82 (50%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
              DV  Q ++E V LP   PE +  +   P KG++L+GPPG GKTLLA+AVA + SATF
Sbjct: 24  AGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATF 82

Query: 72  LRVVGSELIQKYLGDGPKLVRV 93
           L +  + L  KY+GDG KLVR 
Sbjct: 83  LNISAASLTSKYVGDGEKLVRA 104

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score =  114 bits (288), Expect = 1e-32
 Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             L+   + +KE+V LP+  P  ++    KP  G++LYGPPGTGK+ LAKAVA + ++TF
Sbjct: 21  AGLEGAKEALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 79

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
             V  S+L+ K++G+  KLV+
Sbjct: 80  FSVSSSDLVSKWMGESEKLVK 100

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score =  113 bits (284), Expect = 7e-32
 Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             ++     IKE V  P+  P+ +  +   PPKG++L+GPPGTGKTL+ K +A+Q+ ATF
Sbjct: 87  AGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATF 145

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
             +  S L  K++G+G K+VR
Sbjct: 146 FSISASSLTSKWVGEGEKMVR 166

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score =  111 bits (280), Expect = 3e-31
 Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
              D+  Q ++E V LP   PE +  +   P +G++L+GPPG GKT+LAKAVA +++ATF
Sbjct: 118 AGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATF 176

Query: 72  LRVVGSELIQKYLGDGPKLVRV 93
             +  + L  KY+G+G KLVR 
Sbjct: 177 FNISAASLTSKYVGEGEKLVRA 198

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score =  109 bits (273), Expect = 1e-30
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 10 KRGSLDVQIQEIKESVELPLTHPE-YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS 68
          K     +    + +   L +   + + +   IK P  + ++G  G GK+   + V  +  
Sbjct: 5  KLDGFYIAPAFMDK---LVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMG 61

Query: 69 ATFLRVVGSELIQKYLGDGPKLVR 92
             + +   EL     G+  KL+R
Sbjct: 62 INPIMMSAGELESGNAGEPAKLIR 85

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score =  109 bits (273), Expect = 2e-30
 Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 2/83 (2%)

Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT-SAT 70
            L+   + +KE+V LP+  P  +      P +G++L+GPPGTGK+ LAKAVA +  ++T
Sbjct: 15 AGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNST 73

Query: 71 FLRVVGSELIQKYLGDGPKLVRV 93
          F  +  S+L+ K+LG+  KLV+ 
Sbjct: 74 FFSISSSDLVSKWLGESEKLVKN 96

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score =  102 bits (256), Expect = 8e-28
 Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 1/81 (1%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             L+   + +KE+V LP+  P  ++    KP  G++LYGPPGTGK+ LAKAVA + ++TF
Sbjct: 54  AGLEGAKEALKEAVILPVKFPHLFK-GNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112

Query: 72  LRVVGSELIQKYLGDGPKLVR 92
             V  S+L+ K++G+  KLV+
Sbjct: 113 FSVSSSDLVSKWMGESEKLVK 133

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 96.6 bits (240), Expect = 3e-25
 Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT-SAT 70
             L+   + +KE+V LP+  P  +      P +G++L+GPPGTGK+ LAKAVA +  ++T
Sbjct: 137 AGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNST 195

Query: 71  FLRVVGSELIQKYLGDGPKLVR 92
           F  +  S+L+ K+LG+  KLV+
Sbjct: 196 FFSISSSDLVSKWLGESEKLVK 217

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 92.1 bits (229), Expect = 2e-24
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 12  GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
                 +  + +  EL +   +  +     P   V+L GPP +GKT LA  +A +++  F
Sbjct: 36  IKWGDPVTRVLDDGELLVQQTKNSDR---TPLVSVLLEGPPHSGKTALAAKIAEESNFPF 92

Query: 72  LRVVGSELIQKYLGDG 87
           +++   + +  +    
Sbjct: 93  IKICSPDKMIGFSETA 108

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 85.0 bits (211), Expect = 8e-22
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 1/74 (1%)

Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           E++E V+  L  PE + ++G K PKG +L GPPG GKTLLAKAVA +    FL + G+E
Sbjct: 16 LEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAE 74

Query: 79 LIQKYLGDGPKLVR 92
           ++   G G   VR
Sbjct: 75 FVEVIGGLGAARVR 88

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 79.6 bits (197), Expect = 1e-19
 Identities = 37/74 (50%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
          +E+ E V+  L +PE Y  +G K PKGV+L GPPGTGKTLLAKAVA +    F  + GS 
Sbjct: 21 EEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSS 79

Query: 79 LIQKYLGDGPKLVR 92
           I+ ++G G   VR
Sbjct: 80 FIEMFVGLGASRVR 93

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 78.1 bits (193), Expect = 3e-19
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 14 LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
           +   +E+KE VE  L +P  + EMG + PKGV+L GPPG GKT LA+AVA +    F+ 
Sbjct: 21 AEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT 79

Query: 74 VVGSELIQKYLGDGPKLVR 92
            GS+ ++ ++G G   VR
Sbjct: 80 ASGSDFVEMFVGVGAARVR 98

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 78.2 bits (193), Expect = 3e-19
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 1/79 (1%)

Query: 14  LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
            +   +E+KE VE  L +P  + EMG + PKGV+L GPPG GKT LA+AVA +    F+ 
Sbjct: 45  AEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT 103

Query: 74  VVGSELIQKYLGDGPKLVR 92
             GS+ ++ ++G G   VR
Sbjct: 104 ASGSDFVEMFVGVGAARVR 122

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 77.7 bits (192), Expect = 4e-19
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
          +E+ E VE  L  P  ++++G K PKGV++ GPPGTGKTLLAKA+A +    F  + GS+
Sbjct: 22 EEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80

Query: 79 LIQKYLGDGPKLVR 92
           ++ ++G G   VR
Sbjct: 81 FVEMFVGVGASRVR 94

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476

 Score = 73.8 bits (182), Expect = 5e-17
 Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 19 QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
          +E+KE VE  L  P  +  +G + PKG++L GPPGTGKTLLA+AVA + +  F  + GS+
Sbjct: 26 EELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSD 84

Query: 79 LIQKYLGDGPKLVR 92
           ++ ++G G   VR
Sbjct: 85 FVELFVGVGAARVR 98

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499

 Score = 73.8 bits (182), Expect = 5e-17
 Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 19  QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE 78
           +E+KE VE  L +P  + EMG + PKGV+L GPPG GKT LA+AVA +    F+   GS+
Sbjct: 41  EELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 99

Query: 79  LIQKYLGDGPKLVR 92
            ++ ++G G   VR
Sbjct: 100 FVEMFVGVGAARVR 113

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447

 Score = 51.0 bits (123), Expect = 4e-09
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
          +IL+GPPGTGKT LA+ +A   +A   R+
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERI 81

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-09
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 4   SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEE-----MGIKPPKGVILYGPPGTGKTL 58
            Y   + R   D Q+   K +V    +  + Y +     + ++P K V++ G  G+GKT 
Sbjct: 111 MYIEQRDRLYNDNQVF-AKYNV----SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 59  LAKAVAN 65
           +A  V  
Sbjct: 166 VALDVCL 172

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 48.6 bits (115), Expect = 3e-08
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 17  QIQEIKESVELPLTHPEYYEEMGIKPPKG---VILYGPPGTGKTLLAKAVANQTSA---- 69
           +I+E    + +        +++G+        +   G PGTGKT +A  +A         
Sbjct: 42  RIRETAALLLVE----RARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYV 97

Query: 70  ---TFLRVVGSELIQKYLGDGPKLVR 92
                + V   +L+ +Y+G      +
Sbjct: 98  RKGHLVSVTRDDLVGQYIGHTAPKTK 123

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180

 Score = 47.4 bits (113), Expect = 5e-08
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 33 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
           +      +  KG+   G PG GKT LA A    
Sbjct: 28 VFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score = 47.6 bits (113), Expect = 7e-08
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 44  KGVILYGPPGTGKTLLAKAVANQ 66
           +  +LYGPPG GKT  A  VA +
Sbjct: 78  RAAMLYGPPGIGKTTAAHLVAQE 100

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} Length = 308

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 33  EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
           ++ E+      KG+ LYG  G GK+ L  A+A++
Sbjct: 142 DFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHE 175

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} Length = 202

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 40 IKPPKGVILYGPPGTGKTLLAKAVANQ-----TSATFLRVVGSELIQK 82
           K  KG+ L+G  G GKT L  A+AN+      S+  + V   EL ++
Sbjct: 51 GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV--PELFRE 96

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
          G++ P  +I+ G P TGKT L++A+A       L 
Sbjct: 1  GMQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 47 ILYGPPGTGKTLLAKAVANQ 66
          +  GPPGTGKT  A A+A  
Sbjct: 42 LFSGPPGTGKTATAIALARD 61

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score = 41.8 bits (99), Expect = 5e-06
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 47 ILYGPPGTGKTLLAKAVANQ 66
          +  GPPGTGKT  A A+A  
Sbjct: 42 LFSGPPGTGKTATAIALARD 61

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 41  KPPKGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGSEL 79
              + V+L GPPGTGKT LA A+A +  +   F  +VGSE+
Sbjct: 61  MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 47 ILYGPPGTGKTLLAKAVANQ 66
          +  GPPG GKT  A A+A +
Sbjct: 50 LFAGPPGVGKTTAALALARE 69

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 9/52 (17%)

Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
          +  +++   ++   + +               +  G  GTGKT ++K + N+
Sbjct: 26 EDILRDAAIAIRYFVKNEV---------KFSNLFLGLTGTGKTFVSKYIFNE 68

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 24 SVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
           V+L   +  +   M  +P + V++ G  G+GKT +A  VA++T   F   
Sbjct: 10 GVDLGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 9/52 (17%)

Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
          + QI++I   +       +         P  + +YG  GTGKT + K V ++
Sbjct: 26 EDQIRKIASILAPLYREEK---------PNNIFIYGLTGTGKTAVVKFVLSK 68

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 46 VILYGPPGTGKTLLAKAVANQ-TSATFLRV 74
          V L GPPG  K+L+A+ +     +A     
Sbjct: 44 VFLLGPPGIAKSLIARRLKFAFQNARAFEY 73

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389

 Score = 39.8 bits (92), Expect = 4e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 7/52 (13%)

Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ 66
          + Q+Q++   +   L +P               L G PGTGKT+  + +   
Sbjct: 23 EQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWEL 67

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A Length = 543

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 44  KGVIL--YGPPGTGKTLLAKAVANQTSATFLRV 74
           KG IL   GPPG GKT LAK++A      F+R+
Sbjct: 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 37 EMGIKPPKGVILYGPPGTGKTLLAKAVA 64
          +      + V+L G PGTGK++L +A+A
Sbjct: 54 KTAANQKRHVLLIGEPGTGKSMLGQAMA 81

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} Length = 338

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 46 VILYGPPGTGKTLLAKAVAN 65
          ++  GP G GKT LA  ++ 
Sbjct: 58 ILFSGPAGLGKTTLANIISY 77

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* Length = 334

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 12/20 (60%), Positives = 15/20 (75%)

Query: 46 VILYGPPGTGKTLLAKAVAN 65
          V+L GPPG GKT LA  +A+
Sbjct: 54 VLLAGPPGLGKTTLAHIIAS 73

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* Length = 324

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 46 VILYGPPGTGKTLLAKAVAN 65
          ++L+GPPG GKT LA  +A+
Sbjct: 41 LLLFGPPGLGKTTLAHVIAH 60

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Length = 202

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
          + P  +++ G  G+GK+ + +A+A      F+ 
Sbjct: 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 28 PLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83
          PL  PE+     I      +L G PG GKT L K +A+++   ++ V   +L ++ 
Sbjct: 2  PLGSPEFMLLPNI------LLTGTPGVGKTTLGKELASKSGLKYINV--GDLAREE 49

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 46 VILYGPPGTGKTLLAKAVANQ 66
          ++ YGPPGTGKT    A+A +
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 35.8 bits (82), Expect = 7e-04
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP 88
             ++L G PG+GK+ +A+A+AN      +    S+ +  Y+  G 
Sbjct: 9  GNILLLSGHPGSGKSTIAEALANLPGVPKVH-FHSDDLWGYIKHGR 53

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350

 Score = 35.9 bits (83), Expect = 8e-04
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 45 GVILYGPPGTGKTLLAKAVA 64
          GV+++G  GTGK+   +A+A
Sbjct: 47 GVLVFGDRGTGKSTAVRALA 66

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 35.5 bits (81), Expect = 8e-04
 Identities = 6/33 (18%), Positives = 14/33 (42%)

Query: 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
            + +IL G    GK+ + + + +     +L  
Sbjct: 2  TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.89
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.87
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.87
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.87
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.87
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.86
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.81
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.78
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.73
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.73
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.67
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.64
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.63
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.63
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.61
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.61
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.6
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.59
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.58
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.58
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.57
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.57
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.56
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.56
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.56
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.56
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.55
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.55
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.55
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.55
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.55
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.54
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.54
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.53
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.53
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.53
1g6h_A	257	High-affinity branched-chain amino acid transport	99.53
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.52
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.52
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.52
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.52
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.51
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.51
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.51
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.51
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.51
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.5
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.5
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.49
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.49
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.49
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.49
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.49
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.47
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.46
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.46
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.46
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.46
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.46
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.46
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.45
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.44
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.43
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.43
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.43
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.43
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.43
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.42
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.41
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.4
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.39
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.31
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.29
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.28
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.27
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.25
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.21
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.2
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.19
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.19
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.19
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.18
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.16
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.14
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.13
2og2_A	359	Putative signal recognition particle receptor; nuc	99.13
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.12
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.08
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.06
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.05
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.05
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.05
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.04
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.04
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.02
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.01
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.0
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.98
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.98
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.97
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.97
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.96
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.95
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.95
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.95
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.94
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.94
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.94
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.94
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.94
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.94
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.93
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.92
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.92
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.92
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.92
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.91
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.9
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.88
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.88
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.88
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.87
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.87
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.87
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.86
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.86
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	98.85
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.85
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.84
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.82
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	98.81
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.81
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.81
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.81
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.81
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.8
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.79
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.79
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	98.78
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	98.78
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.76
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.75
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.75
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.75
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.74
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.74
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.73
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.72
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.71
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.71
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.71
3pvs_A	447	Replication-associated recombination protein A; ma	98.7
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.7
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.68
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.68
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.68
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.68
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.68
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.66
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.65
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	98.65
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.65
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.65
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	98.63
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.63
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.63
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.62
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.62
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.61
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.61
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.59
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.58
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.58
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.58
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.57
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.57
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.57
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.57
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	98.57
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.57
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.56
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.55
2r44_A	331	Uncharacterized protein; putative ATPase, structur	98.54
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.54
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	98.53
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	98.53
2chq_A	319	Replication factor C small subunit; DNA-binding pr	98.53
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.53
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	98.53
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.53
3co5_A	143	Putative two-component system transcriptional RES	98.52
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.52
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.52
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.51
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.51
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.5
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.49
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	98.49
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.49
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.48
3bos_A	242	Putative DNA replication factor; P-loop containing	98.48
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	98.48
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.48
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.48
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.47
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.46
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.44
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.44
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.43
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.43
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.42
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.42
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	98.42
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.41
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.41
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	98.39
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.39
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.39
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	98.39
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.39
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.37
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.37
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.36
1via_A	175	Shikimate kinase; structural genomics, transferase	98.36
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.36
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.36
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.36
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.35
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	98.35
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.35
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.35
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.31
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.31
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.3
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.3
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	98.29
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.28
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.27
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	98.27
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.27
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	98.27
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	98.26
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	98.26
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	98.25
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.24
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	98.24
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	98.24
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.23
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.23
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	98.23
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	98.23
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	98.22
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	98.22
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.22
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.21
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.21
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.21
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.21
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	98.21
2vli_A	183	Antibiotic resistance protein; transferase, tunica	98.2
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	98.2
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.2
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.2
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.2
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.2
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	98.2
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.2
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.19
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.18
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	98.18
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.18
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.18
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	98.17
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.16
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.16
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.16
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	98.15
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	98.15
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.15
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.14
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	98.14
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.14
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.13
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.13
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.13
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.13
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.12
2qgz_A	308	Helicase loader, putative primosome component; str	98.12
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	98.12
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.12
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.11
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	98.11
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.1
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.09
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.09
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.08
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.08
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.07
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.07
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	98.06
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	98.05
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.04
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.04
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.03
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	98.03
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.02
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	98.01
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.0
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.0
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.0
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.98
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.98
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.97
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.97
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.97
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.96
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.96
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.94
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	97.93
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.91
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.91
2fna_A	357	Conserved hypothetical protein; structural genomic	97.89
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.88
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.88
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.88
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.86
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.86
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.86
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.86
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.86
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	97.86
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.85
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.85
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.85
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.84
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.83
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.83
3ice_A	422	Transcription termination factor RHO; transcriptio	97.81
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.8
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.8
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.78
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.77
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.77
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.76
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.76
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.75
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.75
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.74
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.73
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.73
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.72
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.68
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.67
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.67
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.66
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.66
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.65
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.64
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.64
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.64
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	97.63
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.62
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	97.62
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.62
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.62
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.62
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.61
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.6
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.6
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.59
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.59
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.59
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.59
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.58
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.58
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.58
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.58
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.58
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.58
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.57
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	97.57
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.57
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.56
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.56
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.56
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.55
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.55
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.55
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.54
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.54
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.54
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.54
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.54
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.53
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.52
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.52
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.52
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.52
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.52
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	97.52
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.51
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.51
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	97.51
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.51
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.51
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.51
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.51
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	97.5
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.5
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.5
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.49
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.49
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.48
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.48
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.48
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.48
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.47
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.47
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.47
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.46
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.46
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.46
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.46
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.45
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.44
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.44
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.44
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.44
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.44
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.43
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.43
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.43
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.43
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.43
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.43
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	97.42
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.42
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.42
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.41
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.41
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.41
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.41
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.4
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.4
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.4
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.39
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.39
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.38
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.38
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.38
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.38
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.38
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.37
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.37
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.37
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.37
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.36
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	97.36
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.36
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.35
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	97.35
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.34
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.34
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	97.34
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.34
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.34
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.33
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.32
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	97.32
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	97.32
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.31
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.31
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.31
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.31
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	97.3
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.3
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.3
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.3
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.3
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.3
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.29
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.29
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.29
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.29
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	97.28
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.28
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	97.28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.28
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.27
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.27
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.27
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	97.26
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.26

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3e-23  Score=146.34  Aligned_cols=96  Identities=55%  Similarity=0.944  Sum_probs=90.3

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|+||||+++++++|++.+.+|+.+|++|..+++.++++++|+||||||||++++++|+....+++.+.++++.+++
T Consensus       143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~  222 (405)
T 4b4t_J          143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKY  222 (405)
T ss_dssp             CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSS
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .++++...+..|..+.
T Consensus       223 vGese~~vr~lF~~Ar  238 (405)
T 4b4t_J          223 IGEGSRMVRELFVMAR  238 (405)
T ss_dssp             TTHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH
Confidence            9999988887776543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.5e-22  Score=142.38  Aligned_cols=96  Identities=76%  Similarity=1.114  Sum_probs=90.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|+||||+++++++|++.+.+|+.+++.|..+++.++++++|+||||||||++++++|+....+++.+.+.++.+++
T Consensus       177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~  256 (437)
T 4b4t_I          177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY  256 (437)
T ss_dssp             CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS
T ss_pred             CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .++++...+..|..+.
T Consensus       257 vGesek~ir~lF~~Ar  272 (437)
T 4b4t_I          257 LGDGPRLCRQIFKVAG  272 (437)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHH
Confidence            9999988887775543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3e-22  Score=142.60  Aligned_cols=96  Identities=46%  Similarity=0.818  Sum_probs=89.4

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|+||||+++++++|++.+.+|+.+++.|..+++.++++++|+||||||||+++++||+.+..+++.+.++++.+++
T Consensus       176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~  255 (437)
T 4b4t_L          176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY  255 (437)
T ss_dssp             CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred             CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .++++...+..|..+.
T Consensus       256 ~Gese~~ir~~F~~A~  271 (437)
T 4b4t_L          256 IGESARIIREMFAYAK  271 (437)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHH
Confidence            9999888777665543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.8e-22  Score=142.61  Aligned_cols=95  Identities=47%  Similarity=0.861  Sum_probs=89.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +.++|++|||+++++++|++.+.+|+.+|+.|..++++++++++|+||||||||++++++|+.+..+++.+.+.++..++
T Consensus       176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~  255 (434)
T 4b4t_M          176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMY  255 (434)
T ss_dssp             CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSC
T ss_pred             CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchh
Q psy16321         84 LGDGPKLVRVALVPE   98 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q   98 (102)
                      .++++...+..|..+
T Consensus       256 vGese~~ir~lF~~A  270 (434)
T 4b4t_M          256 IGEGAKLVRDAFALA  270 (434)
T ss_dssp             SSHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHH
Confidence            999998887776544

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.6e-22  Score=142.66  Aligned_cols=96  Identities=52%  Similarity=0.897  Sum_probs=90.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|+||||+++++++|++.+.+|+.+++.|..+++.++++++|+||||||||+|+++||+.+..+++.+.+.++..++
T Consensus       204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~  283 (467)
T 4b4t_H          204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY  283 (467)
T ss_dssp             CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred             CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .+++++..+..|..+.
T Consensus       284 vGesek~ir~lF~~Ar  299 (467)
T 4b4t_H          284 VGEGARMVRELFEMAR  299 (467)
T ss_dssp             SSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999988887776543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=8.2e-22  Score=140.06  Aligned_cols=96  Identities=55%  Similarity=0.960  Sum_probs=89.4

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|+||||+++++++|++.+.+|+.+++.|..+++.++++++|+||||||||++++++|+.++.+++.+.+.++.+++
T Consensus       167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~  246 (428)
T 4b4t_K          167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY  246 (428)
T ss_dssp             CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS
T ss_pred             CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .++++...+..|..+.
T Consensus       247 ~Ge~e~~ir~lF~~A~  262 (428)
T 4b4t_K          247 LGEGPRMVRDVFRLAR  262 (428)
T ss_dssp             CSHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHH
Confidence            9999988877775543

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.81  E-value=5.8e-20  Score=123.96  Aligned_cols=94  Identities=36%  Similarity=0.637  Sum_probs=74.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +.++|++|+|+++++++|++.+.+++.+++.+.++++..+++++|+||||||||||+++|++.+.+..+.+.+.++...+
T Consensus         5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~   84 (274)
T 2x8a_A            5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY   84 (274)
T ss_dssp             -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence            45799999999999999999999999999999999988888899999999999999999999999988888887765554


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .++.+  ..+.+++|.
T Consensus        85 ~~~~~--~~i~~vf~~   98 (274)
T 2x8a_A           85 VGESE--RAVRQVFQR   98 (274)
T ss_dssp             THHHH--HHHHHHHHH
T ss_pred             hhHHH--HHHHHHHHH
Confidence            44333  345566654

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.78  E-value=1.1e-19  Score=136.84  Aligned_cols=96  Identities=44%  Similarity=0.779  Sum_probs=89.1

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|++|+|+++++++|++.+.+|+.+|++|..+++.++++++|+||||||||+|++++|+.+..+++.+++.++.+++
T Consensus       199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~  278 (806)
T 3cf2_A          199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL  278 (806)
T ss_dssp             SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred             CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .++++.+.+..|..+.
T Consensus       279 ~gese~~lr~lF~~A~  294 (806)
T 3cf2_A          279 AGESESNLRKAFEEAE  294 (806)
T ss_dssp             TTHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHH
Confidence            9999988877775543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.73  E-value=2.9e-18  Score=129.26  Aligned_cols=96  Identities=38%  Similarity=0.700  Sum_probs=89.9

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +.++|++|+|+++++++|++.+.+++.+++.+..+++.++++++|+||||||||.+++++|..+..+++.+...++.+++
T Consensus       472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~  551 (806)
T 3cf2_A          472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW  551 (806)
T ss_dssp             CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTT
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .+++++..+..|..+.
T Consensus       552 vGese~~vr~lF~~Ar  567 (806)
T 3cf2_A          552 FGESEANVREIFDKAR  567 (806)
T ss_dssp             CSSCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH
Confidence            9999998887776554

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.73  E-value=7.7e-18  Score=114.55  Aligned_cols=86  Identities=40%  Similarity=0.786  Sum_probs=77.4

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++|+|++++++.|++.+.+++.+++.+.++++.++.+++|+||||||||++++++++.+...++.+++.++...+
T Consensus        10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~   89 (301)
T 3cf0_A           10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW   89 (301)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence            45789999999999999999999999999999999999999999999999999999999999999888888887776666


Q ss_pred             cCchHH
Q psy16321         84 LGDGPK   89 (102)
Q Consensus        84 ~~~~~~   89 (102)
                      .+..+.
T Consensus        90 ~g~~~~   95 (301)
T 3cf0_A           90 FGESEA   95 (301)
T ss_dssp             HTTCTT
T ss_pred             cCchHH
Confidence            655443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.67  E-value=1.6e-16  Score=109.16  Aligned_cols=91  Identities=36%  Similarity=0.670  Sum_probs=76.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh-CccEEEEccchhhhh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT-SATFLRVVGSELIQK   82 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~-~~~~~~i~~~~~~~~   82 (102)
                      +.++|++|+|++++++.|++.+.+++.+++.+... ..++..++|+||+|||||+++++++..+ ...++.+...++...
T Consensus         7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~   85 (322)
T 1xwi_A            7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK   85 (322)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh
Confidence            45789999999999999999999999999887753 4667899999999999999999999988 677888888887777


Q ss_pred             ccCchHHHHHHcc
Q psy16321         83 YLGDGPKLVRVAL   95 (102)
Q Consensus        83 ~~~~~~~~~~~~~   95 (102)
                      +.+..+...+..|
T Consensus        86 ~~g~~~~~~~~lf   98 (322)
T 1xwi_A           86 WLGESEKLVKNLF   98 (322)
T ss_dssp             SCCSCHHHHHHHH
T ss_pred             hhhHHHHHHHHHH
Confidence            7777666554433

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.64  E-value=9.5e-16  Score=102.75  Aligned_cols=87  Identities=62%  Similarity=1.087  Sum_probs=76.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++|+|++++++.|++.+..++.+++.+..+++.++..++|+||||+|||+++++++..+......+...++...+
T Consensus        12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~   91 (285)
T 3h4m_A           12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF   91 (285)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc
Confidence            45689999999999999999999999999999999999999999999999999999999999999888888877776655


Q ss_pred             cCchHHH
Q psy16321         84 LGDGPKL   90 (102)
Q Consensus        84 ~~~~~~~   90 (102)
                      .+..+..
T Consensus        92 ~~~~~~~   98 (285)
T 3h4m_A           92 IGEGASL   98 (285)
T ss_dssp             TTHHHHH
T ss_pred             cchHHHH
Confidence            5554433

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.63  E-value=8.2e-16  Score=105.33  Aligned_cols=90  Identities=39%  Similarity=0.712  Sum_probs=77.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++|+|++++++.|++.+.++..+++.+.. ...+...++|+||||||||+++++++..+...++.+...++...+
T Consensus        13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~   91 (322)
T 3eie_A           13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW   91 (322)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT
T ss_pred             CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc
Confidence            4578999999999999999999999999888776 346678999999999999999999999999999999888887777


Q ss_pred             cCchHHHHHHc
Q psy16321         84 LGDGPKLVRVA   94 (102)
Q Consensus        84 ~~~~~~~~~~~   94 (102)
                      .+..+...+..
T Consensus        92 ~g~~~~~~~~~  102 (322)
T 3eie_A           92 MGESEKLVKQL  102 (322)
T ss_dssp             GGGHHHHHHHH
T ss_pred             cchHHHHHHHH
Confidence            77766555433

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.61  E-value=1.7e-15  Score=100.43  Aligned_cols=86  Identities=37%  Similarity=0.672  Sum_probs=66.9

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      ...+|++|+|++.+++++++.+.+ +.+++.+.+++......++|+|||||||||++++|++.+..+.+.+...++...+
T Consensus         7 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~   85 (257)
T 1lv7_A            7 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF   85 (257)
T ss_dssp             SCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSC
T ss_pred             CCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHh
Confidence            357899999999999999998765 6666777777777778899999999999999999999998888888877765555


Q ss_pred             cCchHHH
Q psy16321         84 LGDGPKL   90 (102)
Q Consensus        84 ~~~~~~~   90 (102)
                      .+..+..
T Consensus        86 ~~~~~~~   92 (257)
T 1lv7_A           86 VGVGASR   92 (257)
T ss_dssp             CCCCHHH
T ss_pred             hhhhHHH
Confidence            5554443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.61  E-value=4.1e-15  Score=98.46  Aligned_cols=93  Identities=39%  Similarity=0.665  Sum_probs=71.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++++|+++++.++++.... +..+..+.++++....+++|+||||||||||+++|++......+.+.+.++....
T Consensus        11 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~   89 (254)
T 1ixz_A           11 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF   89 (254)
T ss_dssp             CSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred             CCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHH
Confidence            456899999999999999987765 5667788888877777799999999999999999999998777777766654444


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .+...  ..+..++|.
T Consensus        90 ~~~~~--~~i~~~~~~  103 (254)
T 1ixz_A           90 VGVGA--ARVRDLFET  103 (254)
T ss_dssp             TTHHH--HHHHHHHHH
T ss_pred             hhHHH--HHHHHHHHH
Confidence            33322  334445554

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.60  E-value=1.5e-15  Score=105.53  Aligned_cols=89  Identities=39%  Similarity=0.724  Sum_probs=73.5

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++|+|++++++.|++.+.+++.+++.+.. ...++..++|+||+|||||+++++++..+..+++.+...++...+
T Consensus        46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~  124 (355)
T 2qp9_X           46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW  124 (355)
T ss_dssp             -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhh
Confidence            3578999999999999999999999999988776 456778899999999999999999999999988888888777666


Q ss_pred             cCchHHHHHH
Q psy16321         84 LGDGPKLVRV   93 (102)
Q Consensus        84 ~~~~~~~~~~   93 (102)
                      .+..+...+.
T Consensus       125 ~g~~~~~~~~  134 (355)
T 2qp9_X          125 MGESEKLVKQ  134 (355)
T ss_dssp             ---CHHHHHH
T ss_pred             cchHHHHHHH
Confidence            6666554443

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.59  E-value=4.6e-16  Score=102.93  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH----HHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP----KLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~~~  101 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|+|...+.........+    ++.+++|++|++.
T Consensus        25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~   93 (235)
T 3tif_A           25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN   93 (235)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred             eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence            5778999999999999999999999999999999888876543222222222    2346999999863

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.58  E-value=5.4e-16  Score=103.27  Aligned_cols=64  Identities=17%  Similarity=0.091  Sum_probs=50.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.|...+...........+.+++|++|++
T Consensus        29 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~   92 (247)
T 2ff7_A           29 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDN   92 (247)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCC
Confidence            5678899999999999999999999999999999888876543222222234456799999975

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.58  E-value=8.4e-16  Score=103.59  Aligned_cols=64  Identities=23%  Similarity=0.158  Sum_probs=50.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.|...+...........+.+++|++|++
T Consensus        39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~  102 (271)
T 2ixe_A           39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEP  102 (271)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSC
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCC
Confidence            5678999999999999999999999999999999888876543222222334456799999975

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.57  E-value=1.1e-14  Score=104.82  Aligned_cols=91  Identities=40%  Similarity=0.742  Sum_probs=76.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++|+|+++.++++++.+.+ +..+..+.++++..+.+++|+||||||||++++++++....+++.++..++...+
T Consensus        11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~   89 (476)
T 2ce7_A           11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF   89 (476)
T ss_dssp             CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred             CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence            346899999999999999998876 6677888888888888999999999999999999999999889889888776666


Q ss_pred             cCchHHHHHHcc
Q psy16321         84 LGDGPKLVRVAL   95 (102)
Q Consensus        84 ~~~~~~~~~~~~   95 (102)
                      .+....+.+..|
T Consensus        90 ~g~~~~~~r~lf  101 (476)
T 2ce7_A           90 VGVGAARVRDLF  101 (476)
T ss_dssp             TTHHHHHHHHHH
T ss_pred             hcccHHHHHHHH
Confidence            665554444333

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.57  E-value=6.8e-15  Score=99.17  Aligned_cols=87  Identities=47%  Similarity=0.776  Sum_probs=72.7

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      ..+|++++|.+.+++.|++.+..+..+++.+..+. .++..++|+|||||||||+++++++.+...+..+...++...+.
T Consensus        17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~   95 (297)
T 3b9p_A           17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYV   95 (297)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSC
T ss_pred             CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhccc
Confidence            56899999999999999999999988888777654 45789999999999999999999999988888888877766665


Q ss_pred             CchHHHHH
Q psy16321         85 GDGPKLVR   92 (102)
Q Consensus        85 ~~~~~~~~   92 (102)
                      +..+...+
T Consensus        96 ~~~~~~~~  103 (297)
T 3b9p_A           96 GDGEKLVR  103 (297)
T ss_dssp             SCHHHHHH
T ss_pred             chHHHHHH
Confidence            55544433

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.56  E-value=9.8e-15  Score=105.29  Aligned_cols=90  Identities=47%  Similarity=0.853  Sum_probs=79.2

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG   85 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~   85 (102)
                      .+|++|+|++.+++.|++.+..++.+++.+..+++.+...++|+||||||||+++++|+.....+++.+++.++...+.+
T Consensus       201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g  280 (489)
T 3hu3_A          201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG  280 (489)
T ss_dssp             CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTT
T ss_pred             CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcc
Confidence            47999999999999999999999999999999999999999999999999999999999999888999988888777766


Q ss_pred             chHHHHHHcc
Q psy16321         86 DGPKLVRVAL   95 (102)
Q Consensus        86 ~~~~~~~~~~   95 (102)
                      +.+...+-.|
T Consensus       281 ~~~~~~~~~f  290 (489)
T 3hu3_A          281 ESESNLRKAF  290 (489)
T ss_dssp             HHHHHHHHHH
T ss_pred             hhHHHHHHHH
Confidence            6554444333

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.56  E-value=4.5e-16  Score=105.20  Aligned_cols=64  Identities=17%  Similarity=0.093  Sum_probs=49.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+++|..|.|...+....  .....+.+.+++|++|++
T Consensus        28 sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~   93 (275)
T 3gfo_A           28 NMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDP   93 (275)
T ss_dssp             EEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSG
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCc
Confidence            5678999999999999999999999999999999888865543211  111223456799999976

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.56  E-value=1.9e-14  Score=96.55  Aligned_cols=93  Identities=39%  Similarity=0.665  Sum_probs=70.8

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++++|++++++++++.... +..+..+.++++....+++|+||||||||||+++|++......+.+.+.++....
T Consensus        35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~  113 (278)
T 1iy2_A           35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF  113 (278)
T ss_dssp             CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence            457899999999999999987764 5667788888777777799999999999999999999998777777766654433


Q ss_pred             cCchHHHHHHccchhh
Q psy16321         84 LGDGPKLVRVALVPEV   99 (102)
Q Consensus        84 ~~~~~~~~~~~~~~q~   99 (102)
                      .+...  .++.+++|.
T Consensus       114 ~~~~~--~~i~~~~~~  127 (278)
T 1iy2_A          114 VGVGA--ARVRDLFET  127 (278)
T ss_dssp             TTHHH--HHHHHHHHH
T ss_pred             hhHHH--HHHHHHHHH
Confidence            33322  334445554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.56  E-value=1.2e-15  Score=101.73  Aligned_cols=63  Identities=17%  Similarity=0.145  Sum_probs=50.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|. |.+...+.........+.+.+++|++|++
T Consensus        20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   82 (249)
T 2qi9_C           20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQ   82 (249)
T ss_dssp             EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCC
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCC
Confidence            5678899999999999999999999999999998 98876543222223334556799999975

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.55  E-value=7.8e-16  Score=103.54  Aligned_cols=64  Identities=16%  Similarity=0.102  Sum_probs=50.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|+.|.|...+.........+.++.++|++|++
T Consensus        31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~   94 (266)
T 4g1u_C           31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYS   94 (266)
T ss_dssp             EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCC
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCC
Confidence            4678999999999999999999999999999998877765543222233344556789999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.55  E-value=8e-16  Score=105.35  Aligned_cols=64  Identities=14%  Similarity=0.184  Sum_probs=53.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|.+.+|+.++|+||||||||||+++|+|++.|..|.|...+...........+.+++|++|++
T Consensus        74 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~  137 (306)
T 3nh6_A           74 SFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDT  137 (306)
T ss_dssp             EEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSC
T ss_pred             eEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCC
Confidence            4668899999999999999999999999999999888876654334444556677899999985

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.55  E-value=1.2e-14  Score=95.99  Aligned_cols=83  Identities=40%  Similarity=0.657  Sum_probs=64.1

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      ..+|++++|++++++.|++.+.. +.+++.+..+++..+..++|+||+|+|||+++++++..+..+...+...++...+.
T Consensus         2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~   80 (262)
T 2qz4_A            2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG   80 (262)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence            35899999999999999998876 66677777788888899999999999999999999999988888888776654444


Q ss_pred             CchH
Q psy16321         85 GDGP   88 (102)
Q Consensus        85 ~~~~   88 (102)
                      +..+
T Consensus        81 ~~~~   84 (262)
T 2qz4_A           81 GLGA   84 (262)
T ss_dssp             THHH
T ss_pred             ChhH
Confidence            4333

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.55  E-value=1.4e-14  Score=104.79  Aligned_cols=86  Identities=38%  Similarity=0.689  Sum_probs=71.5

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++++|+++.++++++.+.+ +..+..+.++++..+.+++|+||||||||||+++|++.....++.+++.++...+
T Consensus        26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~  104 (499)
T 2dhr_A           26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF  104 (499)
T ss_dssp             CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred             CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence            456899999999999999998765 5667778888877778899999999999999999999998888888888776555


Q ss_pred             cCchHHH
Q psy16321         84 LGDGPKL   90 (102)
Q Consensus        84 ~~~~~~~   90 (102)
                      .+....+
T Consensus       105 ~g~~~~~  111 (499)
T 2dhr_A          105 VGVGAAR  111 (499)
T ss_dssp             TTHHHHH
T ss_pred             hhhHHHH
Confidence            5544433

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.55  E-value=1.2e-15  Score=101.12  Aligned_cols=64  Identities=25%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.+...+.........+. +.+++|++|++
T Consensus        26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   90 (240)
T 1ji0_A           26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGR   90 (240)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCC
Confidence            46788999999999999999999999999999998888765432111122222 33489999975

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.54  E-value=2e-15  Score=101.39  Aligned_cols=64  Identities=16%  Similarity=0.145  Sum_probs=49.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+++|+.|.|...+....  .......+++++|++|++
T Consensus        44 sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~  109 (263)
T 2olj_A           44 NVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRF  109 (263)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSC
T ss_pred             EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCC
Confidence            5678999999999999999999999999999999888866543211  111223456799999975

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.54  E-value=1.4e-15  Score=106.32  Aligned_cols=65  Identities=15%  Similarity=0.117  Sum_probs=50.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~q~~~  101 (102)
                      +|++.+|++++|+||||||||||+|+|+|+++|+.|.|...+.........   ..+++++|+||+++
T Consensus        48 sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~  115 (366)
T 3tui_C           48 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN  115 (366)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCC
T ss_pred             EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCc
Confidence            577899999999999999999999999999999988887654322222222   23456999999863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.53  E-value=1.8e-15  Score=99.42  Aligned_cols=64  Identities=17%  Similarity=0.155  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCch---HH-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG---PK-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~---~~-~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.+|..|.+...+.........   .. +.+++|++|++
T Consensus        24 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~   91 (224)
T 2pcj_A           24 SLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFH   91 (224)
T ss_dssp             EEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCc
Confidence            467889999999999999999999999999999988886654321111111   11 25689999975

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.53  E-value=1.4e-15  Score=102.88  Aligned_cols=64  Identities=22%  Similarity=0.124  Sum_probs=49.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhh--ccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQK--YLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.|...+....  .....+.+++++|++|++
T Consensus        41 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~  106 (279)
T 2ihy_A           41 SWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSL  106 (279)
T ss_dssp             EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHH
T ss_pred             eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCc
Confidence            4678899999999999999999999999999999888876543211  112233445689999975

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.53  E-value=2.2e-15  Score=100.85  Aligned_cols=63  Identities=17%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+.+|..|.|...+..... .....+.+++|++|++
T Consensus        35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~   97 (256)
T 1vpl_A           35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEA   97 (256)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTC
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCC
Confidence            46789999999999999999999999999999998888655432111 1123345689999975

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.53  E-value=2.3e-15  Score=100.65  Aligned_cols=64  Identities=14%  Similarity=0.085  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc-hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD-GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+++|..|.|...+........ ...+.+++|++|++
T Consensus        27 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~   91 (257)
T 1g6h_A           27 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTP   91 (257)
T ss_dssp             CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCC
T ss_pred             EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCC
Confidence            46678999999999999999999999999999998888665432111111 12344689999975

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.52  E-value=1.3e-15  Score=106.25  Aligned_cols=64  Identities=17%  Similarity=0.169  Sum_probs=49.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh--hccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ--KYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+|+|+|+..|+.|.|...+...  ........+++++|+||++
T Consensus        24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~   89 (359)
T 3fvq_A           24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEG   89 (359)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTC
T ss_pred             EEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCC
Confidence            567899999999999999999999999999999988887554321  1112223345799999985

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.52  E-value=8e-15  Score=104.49  Aligned_cols=83  Identities=36%  Similarity=0.689  Sum_probs=64.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh-CccEEEEccchhhhh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT-SATFLRVVGSELIQK   82 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~-~~~~~~i~~~~~~~~   82 (102)
                      +..+|++|+|++++++.|++.+.+++.+++.+... ..+...++|+||||||||+++++++..+ ...++.+...++...
T Consensus       129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~-~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~  207 (444)
T 2zan_A          129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK  207 (444)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG-GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence            45789999999999999999999999888877642 3567899999999999999999999998 667788887777665


Q ss_pred             ccCch
Q psy16321         83 YLGDG   87 (102)
Q Consensus        83 ~~~~~   87 (102)
                      +.+..
T Consensus       208 ~~g~~  212 (444)
T 2zan_A          208 WLGES  212 (444)
T ss_dssp             ----C
T ss_pred             hcchH
Confidence            55543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.52  E-value=1.8e-15  Score=106.18  Aligned_cols=62  Identities=23%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+|+|+|++.|+.|.|...+.......  ..++.++|+||++
T Consensus        23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~--~~~r~ig~VfQ~~   84 (381)
T 3rlf_A           23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP--PAERGVGMVFQSY   84 (381)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC--GGGSCEEEECTTC
T ss_pred             EEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC--HHHCCEEEEecCC
Confidence            5678999999999999999999999999999999888876543222111  2235699999985

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.52  E-value=6.9e-16  Score=102.45  Aligned_cols=64  Identities=13%  Similarity=0.114  Sum_probs=48.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.|...+...........+.+++|++|++
T Consensus        22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~   85 (243)
T 1mv5_A           22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS   85 (243)
T ss_dssp             EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCC
Confidence            5678999999999999999999999999999998777765432211112222345689999975

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.51  E-value=3.5e-15  Score=103.76  Aligned_cols=62  Identities=19%  Similarity=0.248  Sum_probs=49.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+|+|+|+..|+.|.|...+....  .....+++++|++|++
T Consensus        20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~--~~~~~~r~ig~v~Q~~   81 (348)
T 3d31_A           20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNY   81 (348)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT--TSCHHHHTCEEECTTC
T ss_pred             EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECC--CCchhhCcEEEEecCc
Confidence            5678999999999999999999999999999999888876543211  1234456799999985

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.51  E-value=4.2e-15  Score=99.74  Aligned_cols=64  Identities=9%  Similarity=0.101  Sum_probs=48.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc----------cCc---hHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY----------LGD---GPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~----------~~~---~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+++|..|.|...+.....          ...   ...+++++|++|++
T Consensus        26 sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~  102 (262)
T 1b0u_A           26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF  102 (262)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCc
Confidence            56789999999999999999999999999999998888655421110          111   23345799999975

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.51  E-value=4.6e-15  Score=99.44  Aligned_cols=63  Identities=17%  Similarity=0.104  Sum_probs=48.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++++ .|.|...+...........+.+++|++|++
T Consensus        40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~  102 (260)
T 2ghi_A           40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT  102 (260)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSC
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCC
Confidence            567899999999999999999999999999876 677765543222222233455689999975

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.51  E-value=3.7e-14  Score=98.47  Aligned_cols=87  Identities=38%  Similarity=0.736  Sum_probs=72.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +..+|++|+|++.+++.|++.+.+++.+++.+.... .+...++|+||+|+|||+++++++......++.+...++...+
T Consensus        79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~  157 (357)
T 3d8b_A           79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW  157 (357)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred             CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence            457899999999999999999999888887766553 5678999999999999999999999999888888888776665


Q ss_pred             cCchHHHH
Q psy16321         84 LGDGPKLV   91 (102)
Q Consensus        84 ~~~~~~~~   91 (102)
                      .+..+...
T Consensus       158 ~g~~~~~~  165 (357)
T 3d8b_A          158 VGEGEKMV  165 (357)
T ss_dssp             TTHHHHHH
T ss_pred             cchHHHHH
Confidence            55544443

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.50  E-value=3.8e-15  Score=103.93  Aligned_cols=62  Identities=24%  Similarity=0.251  Sum_probs=48.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+|+|+|+.+|+.|.|...+.......  ..+++++|+||++
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~   84 (359)
T 2yyz_A           23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP--PKYREVGMVFQNY   84 (359)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--GGGTTEEEECSSC
T ss_pred             EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC--hhhCcEEEEecCc
Confidence            5678999999999999999999999999999999888876543211111  2235699999975

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.50  E-value=2.9e-15  Score=97.97  Aligned_cols=59  Identities=22%  Similarity=0.231  Sum_probs=47.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.|...+....     +.+..++|++|++
T Consensus        29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~   87 (214)
T 1sgw_A           29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEI   87 (214)
T ss_dssp             EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCC
Confidence            4678899999999999999999999999999999888865542111     1245688998875

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.49  E-value=4.6e-15  Score=99.70  Aligned_cols=61  Identities=18%  Similarity=0.117  Sum_probs=48.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+.+|..|.|...+.....   ...+.+++|++|++
T Consensus        27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~---~~~~~~i~~v~q~~   87 (266)
T 2yz2_A           27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG---YEIRRNIGIAFQYP   87 (266)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH---HHHGGGEEEECSSG
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch---HHhhhhEEEEeccc
Confidence            56789999999999999999999999999999998888665431111   13345689999974

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.49  E-value=4.8e-15  Score=103.51  Aligned_cols=62  Identities=29%  Similarity=0.252  Sum_probs=48.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+|+|+|+..|+.|.|...+.......  ..+++++|+||++
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~   84 (362)
T 2it1_A           23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP--PKDRNVGLVFQNW   84 (362)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--GGGTTEEEECTTC
T ss_pred             EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC--HhHCcEEEEecCc
Confidence            5678999999999999999999999999999999888866543211111  2235689999975

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.49  E-value=3.7e-15  Score=103.85  Aligned_cols=62  Identities=26%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+|+|+|+.+|+.|.|...+.....  ....+++++|++|++
T Consensus        35 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~--~~~~~r~ig~v~Q~~   96 (355)
T 1z47_A           35 SFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD--LPPQKRNVGLVFQNY   96 (355)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT--CCGGGSSEEEECGGG
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCc--CChhhCcEEEEecCc
Confidence            56788999999999999999999999999999998888765432111  112245689999985

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.49  E-value=6.2e-15  Score=103.80  Aligned_cols=63  Identities=19%  Similarity=0.157  Sum_probs=49.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++ +.|.|...+.........+.++.++|+||++
T Consensus        41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~  103 (390)
T 3gd7_A           41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKV  103 (390)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCC
T ss_pred             eEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCc
Confidence            46789999999999999999999999999987 7787766543322233344566799999985

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.49  E-value=4.9e-15  Score=103.78  Aligned_cols=62  Identities=27%  Similarity=0.327  Sum_probs=47.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+|+|+|+..|+.|.|...+.......  ..+++++|+||++
T Consensus        31 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--~~~r~ig~v~Q~~   92 (372)
T 1v43_A           31 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP--PKDRNISMVFQSY   92 (372)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--GGGGTEEEEEC--
T ss_pred             EEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC--hhhCcEEEEecCc
Confidence            5678999999999999999999999999999999888876543211111  2235689999975

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.47  E-value=2e-14  Score=96.69  Aligned_cols=64  Identities=17%  Similarity=0.144  Sum_probs=46.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh--CccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT--SATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~--~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+.  .|..|.|...+........... +..++|++|++
T Consensus        40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~  106 (267)
T 2zu0_C           40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYP  106 (267)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCc
Confidence            4678999999999999999999999999984  5677777654432121222222 23478999875

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.46  E-value=1.2e-14  Score=96.77  Aligned_cols=64  Identities=17%  Similarity=0.124  Sum_probs=46.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhh--hCccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ--TSATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~--~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~  100 (102)
                      ++++.+|+.++|+||||||||||+++|+|+  +.|..|.|...+.........+. +..++|++|++
T Consensus        23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~   89 (250)
T 2d2e_A           23 NLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYP   89 (250)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence            467889999999999999999999999998  67777877655432111122222 22367888875

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.46  E-value=3.2e-15  Score=104.09  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=48.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc---cCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY---LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+..|+.|.|...+.....   ......+++++|++|++
T Consensus        25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~   91 (353)
T 1oxx_K           25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTW   91 (353)
T ss_dssp             EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTS
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCC
Confidence            57789999999999999999999999999999998888655422111   00122345689999975

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.46  E-value=7e-15  Score=97.59  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=46.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+ +.++|+||||||||||+++|+|+.+|..|.+...+......  ...+++++|++|++
T Consensus        19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~i~~v~q~~   79 (240)
T 2onk_A           19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL--PPERRGIGFVPQDY   79 (240)
T ss_dssp             EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS--CTTTSCCBCCCSSC
T ss_pred             EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC--chhhCcEEEEcCCC
Confidence            567889 99999999999999999999999999988886554211111  12234688999875

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.46  E-value=6e-15  Score=103.34  Aligned_cols=64  Identities=23%  Similarity=0.267  Sum_probs=48.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc--cC--chHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY--LG--DGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~--~~--~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+|+|+|+..|+.|.|...+.....  ..  ....+++++|+||++
T Consensus        23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~   90 (372)
T 1g29_1           23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSY   90 (372)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCC
T ss_pred             EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCC
Confidence            56788999999999999999999999999999998888655432111  00  112235689999975

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.46  E-value=3.3e-14  Score=104.49  Aligned_cols=64  Identities=19%  Similarity=0.253  Sum_probs=53.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|+.|++..++.........+.+.+++|++|++
T Consensus       375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~  438 (598)
T 3qf4_B          375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDT  438 (598)
T ss_dssp             EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTC
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCC
Confidence            4668999999999999999999999999999999888876654444445556677899999986

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.46  E-value=1.4e-13  Score=96.38  Aligned_cols=86  Identities=41%  Similarity=0.744  Sum_probs=68.3

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      ..+|++|+|.+.+++.|++.+..+..+++.+..+. .+...++|+||+|+|||+++++|+......++.+...++...+.
T Consensus       111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~  189 (389)
T 3vfd_A          111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV  189 (389)
T ss_dssp             CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-----
T ss_pred             CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc
Confidence            45799999999999999999999888888777665 45689999999999999999999999999999998887766666


Q ss_pred             CchHHHH
Q psy16321         85 GDGPKLV   91 (102)
Q Consensus        85 ~~~~~~~   91 (102)
                      +..+...
T Consensus       190 g~~~~~~  196 (389)
T 3vfd_A          190 GEGEKLV  196 (389)
T ss_dssp             --CHHHH
T ss_pred             chHHHHH
Confidence            6555443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.45  E-value=1.6e-14  Score=95.08  Aligned_cols=41  Identities=20%  Similarity=0.236  Sum_probs=37.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|++...
T Consensus        28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~   68 (229)
T 2pze_A           28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS   68 (229)
T ss_dssp             EEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEEC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEEC
Confidence            56788999999999999999999999999999998887654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.44  E-value=1.5e-14  Score=95.68  Aligned_cols=41  Identities=22%  Similarity=0.163  Sum_probs=37.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.|...
T Consensus        25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~   65 (237)
T 2cbz_A           25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIK   65 (237)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEEC
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence            56789999999999999999999999999999988887654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.43  E-value=3.4e-14  Score=104.06  Aligned_cols=64  Identities=20%  Similarity=0.147  Sum_probs=51.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|+.|++..++.........+.+.+++|++|++
T Consensus       363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~  426 (582)
T 3b60_A          363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV  426 (582)
T ss_dssp             EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSC
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCC
Confidence            4668899999999999999999999999999999888876554323334445566799999986

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.43  E-value=6.3e-14  Score=93.22  Aligned_cols=76  Identities=45%  Similarity=0.698  Sum_probs=65.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI   80 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~   80 (102)
                      +..+|++++|.+.+++.+++.+.. +.+++.+.+++...+..++|+||+|+|||+++++++.....+.+.+...++.
T Consensus         6 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~   81 (268)
T 2r62_A            6 PNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI   81 (268)
T ss_dssp             CCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred             CCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence            356899999999999999998775 7788888888888888899999999999999999999888777666655543

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.43  E-value=3.7e-14  Score=104.06  Aligned_cols=64  Identities=22%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|..|++..++.........+.+.+++|++|++
T Consensus       363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~  426 (587)
T 3qf4_A          363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET  426 (587)
T ss_dssp             EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCC
Confidence            3568899999999999999999999999999999888876655444455566777899999986

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.43  E-value=2.3e-14  Score=104.89  Aligned_cols=64  Identities=19%  Similarity=0.177  Sum_probs=53.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|..|++..++.........+.+.+++|++|++
T Consensus       361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~  424 (578)
T 4a82_A          361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN  424 (578)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSC
T ss_pred             EEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCC
Confidence            4668899999999999999999999999999999888876654434445556677899999985

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.42  E-value=3.5e-14  Score=104.00  Aligned_cols=64  Identities=19%  Similarity=0.087  Sum_probs=50.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|+.|++..++.........+.+.+++|++|++
T Consensus       363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~  426 (582)
T 3b5x_A          363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV  426 (582)
T ss_pred             eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCC
Confidence            4668999999999999999999999999999998887765543223333345556799999986

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.41  E-value=1.7e-14  Score=96.36  Aligned_cols=39  Identities=13%  Similarity=0.187  Sum_probs=36.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++++.+|+.++|+||||||||||+++|+|+++|..|.|.
T Consensus        25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~   63 (253)
T 2nq2_C           25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE   63 (253)
T ss_dssp             EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            467889999999999999999999999999999988875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.40  E-value=5.9e-14  Score=94.27  Aligned_cols=59  Identities=22%  Similarity=0.367  Sum_probs=46.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHc-cchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVA-LVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~q~~  100 (102)
                      ++.+. |+.++|+||||||||||+++|+|+. |+.|.+...+...... . . +++++ |++|++
T Consensus        25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~-~-~~~i~~~v~Q~~   84 (263)
T 2pjz_A           25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-R-N-YIRYSTNLPEAY   84 (263)
T ss_dssp             EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-S-C-CTTEEECCGGGS
T ss_pred             eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-H-H-hhheEEEeCCCC
Confidence            57789 9999999999999999999999999 9888886554221111 1 2 45688 999986

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.39  E-value=6.2e-14  Score=95.35  Aligned_cols=41  Identities=20%  Similarity=0.236  Sum_probs=37.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.+...
T Consensus        58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~   98 (290)
T 2bbs_A           58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS   98 (290)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECC
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence            46688999999999999999999999999999998888654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.31  E-value=6.6e-13  Score=104.33  Aligned_cols=64  Identities=14%  Similarity=0.048  Sum_probs=54.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|+++|..|.|..++...........+.+++|++|++
T Consensus       410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~  473 (1284)
T 3g5u_A          410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP  473 (1284)
T ss_dssp             EEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence            4668899999999999999999999999999999888876655445555666777899999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.29  E-value=3.4e-13  Score=106.18  Aligned_cols=64  Identities=17%  Similarity=0.211  Sum_probs=56.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||+|||||||+++|.++++|..|.|..++......+....|.++++|+|++
T Consensus      1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp 1162 (1321)
T 4f4c_A         1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP 1162 (1321)
T ss_dssp             EEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSC
T ss_pred             eEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCC
Confidence            4678999999999999999999999999999999888777666556677778888999999996

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.28  E-value=1.1e-12  Score=103.32  Aligned_cols=64  Identities=14%  Similarity=0.112  Sum_probs=56.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||+|||||||+++|.|+++|..|.|..++...+.......+.+++||+|++
T Consensus       438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~  501 (1321)
T 4f4c_A          438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEP  501 (1321)
T ss_dssp             EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred             EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcc
Confidence            4678999999999999999999999999999999998887766556667777888999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.27  E-value=8.7e-13  Score=103.67  Aligned_cols=64  Identities=16%  Similarity=0.114  Sum_probs=53.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+|+.++|+||||||||||+++|+|+++|..|.|..++...........+.+++|++|++
T Consensus      1053 sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A         1053 SLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116 (1284)
T ss_dssp             CEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCC
Confidence            4568899999999999999999999999999999998877655434444455566799999986

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.25  E-value=3.2e-12  Score=79.95  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=35.9

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      .++.+.+|+.++|+||||||||||+++|+|++ +..+.+...
T Consensus        26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~   66 (158)
T 1htw_A           26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSP   66 (158)
T ss_dssp             HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCC
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEEC
Confidence            46789999999999999999999999999999 776666544

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.21  E-value=3.4e-13  Score=87.73  Aligned_cols=56  Identities=27%  Similarity=0.209  Sum_probs=39.1

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .+|+.++|+||||||||||+++|+|+ .|+.|.+...++.  . ...+.+.+++|++|++
T Consensus        20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~--~-~~~~~~~~ig~v~q~~   75 (208)
T 3b85_A           20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILT--R-PAVEAGEKLGFLPGTL   75 (208)
T ss_dssp             HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEE--E-CSCCTTCCCCSSCC--
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEec--C-CchhhhcceEEecCCH
Confidence            57999999999999999999999999 8877766432111  1 1112234578888864

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.20  E-value=1.1e-12  Score=85.50  Aligned_cols=31  Identities=26%  Similarity=0.422  Sum_probs=25.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++
T Consensus        17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            5678899999999999999999999999988

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.19  E-value=4.5e-12  Score=86.57  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=33.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++.+.+|++++|+|||||||||+++.|++++.+..+.+.
T Consensus        94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~  132 (302)
T 3b9q_A           94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL  132 (302)
T ss_dssp             CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            455678999999999999999999999999887655544

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.19  E-value=6.9e-11  Score=84.36  Aligned_cols=77  Identities=30%  Similarity=0.329  Sum_probs=62.5

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC--ccEEEEccchhhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS--ATFLRVVGSELIQK   82 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~~~~~i~~~~~~~~   82 (102)
                      ...|++++|.++.++.+.+.+...        ..+..++..++|+||||||||+++++++..+.  ..+..+.+.++...
T Consensus        33 ~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~  104 (456)
T 2c9o_A           33 KQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST  104 (456)
T ss_dssp             CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred             hhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence            346899999999999988776432        12344678899999999999999999999998  67888888888777


Q ss_pred             ccCchHH
Q psy16321         83 YLGDGPK   89 (102)
Q Consensus        83 ~~~~~~~   89 (102)
                      +.++.+.
T Consensus       105 ~~~~~~~  111 (456)
T 2c9o_A          105 EIKKTEV  111 (456)
T ss_dssp             SSCHHHH
T ss_pred             hhhhhHH
Confidence            7777665

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.19  E-value=2e-12  Score=83.46  Aligned_cols=31  Identities=19%  Similarity=0.371  Sum_probs=26.2

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..+.+|++++|+||||||||||+++|+|+++
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5788999999999999999999999999985

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.18  E-value=4.5e-11  Score=85.37  Aligned_cols=78  Identities=21%  Similarity=0.390  Sum_probs=60.1

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCC-CCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh-hccCc
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIK-PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGD   86 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~-~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~-~~~~~   86 (102)
                      +.|+|.++.++.|...+..++++...+..+... ++.+++|+|||||||||++++|+..++..+..+....+.. .+.+.
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~   94 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK   94 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence            368999999999999987776655554444332 4568999999999999999999999999988888766655 35553

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.16  E-value=8.1e-11  Score=79.39  Aligned_cols=81  Identities=26%  Similarity=0.415  Sum_probs=59.0

Q ss_pred             cc-ccCChHHHHHHHHHHhhhhcCChHHHHhcCCC---CCceeEEECCCCCChhHHHHHHHhhhCc-------cEEEEcc
Q psy16321          8 LK-KRGSLDVQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGPPGTGKTLLAKAVANQTSA-------TFLRVVG   76 (102)
Q Consensus         8 ~~-~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~---~~~~~~l~Gp~GsGKStl~~~i~~~~~~-------~~~~i~~   76 (102)
                      ++ +++|++++++.|++.+..... +.....+++.   ++..++|+||+|+|||+++++++..+..       +...+..
T Consensus        29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~  107 (309)
T 3syl_A           29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR  107 (309)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred             HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence            44 799999999999998877543 4455555543   3446999999999999999999987632       5667776


Q ss_pred             chhhhhccCchHH
Q psy16321         77 SELIQKYLGDGPK   89 (102)
Q Consensus        77 ~~~~~~~~~~~~~   89 (102)
                      .++...+.+....
T Consensus       108 ~~l~~~~~g~~~~  120 (309)
T 3syl_A          108 DDLVGQYIGHTAP  120 (309)
T ss_dssp             GGTCCSSTTCHHH
T ss_pred             HHhhhhcccccHH
Confidence            6665555554443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.15  E-value=3.4e-11  Score=87.77  Aligned_cols=65  Identities=26%  Similarity=0.348  Sum_probs=51.7

Q ss_pred             ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321          8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus         8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      ++++.|++++++.+.+.+.+..      .++.+ ++..++|+|||||||||++++|++.+.++.+.+...+.
T Consensus        80 ~~di~G~~~vk~~i~~~~~l~~------~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~  144 (543)
T 3m6a_A           80 DEEHHGLEKVKERILEYLAVQK------LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV  144 (543)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHHH------HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred             HHHhccHHHHHHHHHHHHHHHH------hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence            4568999999998877665432      12333 68899999999999999999999999999888876653

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.14  E-value=3.4e-12  Score=92.99  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=32.7

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      +.+|++++|+||||||||||+++|+|+.+|..|.+.
T Consensus       309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~  344 (538)
T 1yqt_A          309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE  344 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            468999999999999999999999999998877664

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.13  E-value=3.8e-12  Score=93.89  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      +.+|++++|+||||||||||+++|+|++.|..|.+.
T Consensus       379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~  414 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE  414 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            568999999999999999999999999998877664

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.13  E-value=1.3e-11  Score=86.06  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=33.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++.+.+|++++|+|||||||||+++.|++++.+..+.+.
T Consensus       151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~  189 (359)
T 2og2_A          151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL  189 (359)
T ss_dssp             CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred             ceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEE
Confidence            455678999999999999999999999999877655443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.12  E-value=8.5e-12  Score=79.67  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=26.2

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+.+|+.++|+||||||||||+++|+++.+
T Consensus         2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            2 NAMNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             ---CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4456899999999999999999999999864

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.08  E-value=1.6e-11  Score=88.63  Aligned_cols=39  Identities=26%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ++.+.+|++++|+||||||||||+++|++++.+..+.|.
T Consensus       287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~  325 (503)
T 2yhs_A          287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVM  325 (503)
T ss_dssp             CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             eeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEE
Confidence            456778999999999999999999999999877655443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.06  E-value=1e-10  Score=80.08  Aligned_cols=31  Identities=29%  Similarity=0.530  Sum_probs=29.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++.+++|+.++|+||||||||||+++|+|++
T Consensus       120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            5789999999999999999999999999998

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.05  E-value=1.6e-10  Score=72.66  Aligned_cols=57  Identities=23%  Similarity=0.273  Sum_probs=40.3

Q ss_pred             cccccccCChH-HHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          5 YKALKKRGSLD-VQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         5 ~~~~~~i~g~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..+|++..+.. .+.+.+....       +...++.+.+++.++|+||||+|||||++++++.+.
T Consensus         6 ~~~f~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A            6 NANLDTYHPKNVSQNRALLTIR-------VFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             TCCSSSCCCCSHHHHHHHHHHH-------HHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             hCccccccCCCHHHHHHHHHHH-------HHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35777777633 2333332222       234566777899999999999999999999999875

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.05  E-value=8e-11  Score=78.84  Aligned_cols=42  Identities=17%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-EEEEc
Q psy16321         34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-FLRVV   75 (102)
Q Consensus        34 ~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-~~~i~   75 (102)
                      .+.++.+.+++.++|+|||||||||++++|++++++. .+.+.
T Consensus        16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~   58 (261)
T 2eyu_A           16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHII   58 (261)
T ss_dssp             HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE
T ss_pred             HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEE
Confidence            4555567899999999999999999999999998876 56554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.05  E-value=8.8e-12  Score=89.38  Aligned_cols=37  Identities=22%  Similarity=0.177  Sum_probs=33.6

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++.+.+|+.++|+||||||||||+|+|+|++.+..+
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G  167 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNA  167 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence            5677889999999999999999999999999887766

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.04  E-value=7e-11  Score=84.27  Aligned_cols=40  Identities=23%  Similarity=0.252  Sum_probs=36.1

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      +.+.+|+.++|+||||||||||+++|+|+.+++.+.+...
T Consensus       152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~  191 (438)
T 2dpy_A          152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLI  191 (438)
T ss_dssp             SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEE
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEe
Confidence            6788999999999999999999999999999987776544

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.04  E-value=2e-10  Score=72.63  Aligned_cols=41  Identities=27%  Similarity=0.374  Sum_probs=32.4

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      .+.+|+.++|+|||||||||++++|++.+....+.+...++
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~   45 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   45 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence            46789999999999999999999999985544555655443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.02  E-value=5.2e-11  Score=77.91  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=29.5

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVV   75 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~   75 (102)
                      ..++|+.++|+||||||||||+++|++..++  ..+.+.
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~   50 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVS   50 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEE
Confidence            3578999999999999999999999999875  345444

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.01  E-value=1.1e-10  Score=79.82  Aligned_cols=35  Identities=20%  Similarity=0.150  Sum_probs=30.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++++++|+|||||||||++++|++++.+..+.+..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l  135 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF  135 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence            57899999999999999999999999887555543

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.01  E-value=3.9e-11  Score=92.29  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=37.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|..|.|...
T Consensus       693 Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~  733 (986)
T 2iw3_A          693 NFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH  733 (986)
T ss_dssp             EEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence            46688999999999999999999999999999998888654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.00  E-value=6.8e-11  Score=85.71  Aligned_cols=61  Identities=16%  Similarity=0.044  Sum_probs=42.8

Q ss_pred             hc-CCCCCceeEEECCCCCChhHHHHH--HHhhhCccEEEE--ccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EM-GIKPPKGVILYGPPGTGKTLLAKA--VANQTSATFLRV--VGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~-~i~~~~~~~l~Gp~GsGKStl~~~--i~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++ ++++|+.++|+||||||||||+++  ++|+.++..+.+  .+.+.  . ....+...+++|++|++
T Consensus        32 ~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~--~-~~~~~~~~~~g~~~q~~   97 (525)
T 1tf7_A           32 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET--P-QDIIKNARSFGWDLAKL   97 (525)
T ss_dssp             TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC--H-HHHHHHHGGGTCCHHHH
T ss_pred             cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC--H-HHHHHHHHHcCCChHHh
Confidence            45 678999999999999999999999  689887654444  33331  1 11122334688998875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.98  E-value=4.2e-10  Score=77.14  Aligned_cols=56  Identities=21%  Similarity=0.237  Sum_probs=42.5

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHh-hhCccE
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVAN-QTSATF   71 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~-~~~~~~   71 (102)
                      .+++|+++.|.+..++.+++.+.            .......++|+||||+||||+++++++ +..+..
T Consensus         9 rP~~~~~~vg~~~~~~~l~~~~~------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~   65 (354)
T 1sxj_E            9 RPKSLNALSHNEELTNFLKSLSD------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGV   65 (354)
T ss_dssp             CCCSGGGCCSCHHHHHHHHTTTT------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTC
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHh------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence            47789999999998888876651            011222389999999999999999999 555443

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.98  E-value=5.5e-10  Score=75.64  Aligned_cols=57  Identities=25%  Similarity=0.339  Sum_probs=44.6

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHcc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVAL   95 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (102)
                      ....+.+++|+||||||||+++++|+..+..+.+.++..++...+.+..+...+..|
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f   88 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRY   88 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHH
Confidence            456678999999999999999999999999999999888887777776665544444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.97  E-value=1.2e-10  Score=84.88  Aligned_cols=39  Identities=26%  Similarity=0.269  Sum_probs=34.4

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +++.+|++++|+||||||||||+++|+|+.+|..|.+..
T Consensus       289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~  327 (538)
T 3ozx_A          289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTP  327 (538)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEES
T ss_pred             ceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence            346789999999999999999999999999998777643

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.97  E-value=4.7e-11  Score=80.30  Aligned_cols=53  Identities=15%  Similarity=0.155  Sum_probs=29.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      .++|+||||||||||+++|+|+..+..+.+...+...   .....+..+++++|+.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i---~~~~~~~~i~~v~q~~   56 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI---PKTVEIKAIGHVIEEG   56 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------C---CCCCSCCEEEESCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc---CcceeeeeeEEEeecC
Confidence            5789999999999999999999998877765433211   1111223467777753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.96  E-value=1.3e-10  Score=73.77  Aligned_cols=25  Identities=36%  Similarity=0.659  Sum_probs=22.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .++|+||||||||||+++|+|++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i   26 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5789999999999999999999863

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.95  E-value=3e-10  Score=72.97  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=28.2

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      ..+++.++|+||||||||||+++|++++++....+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v   37 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGERVALL   37 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            35788999999999999999999999987533333

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.95  E-value=2.5e-10  Score=71.70  Aligned_cols=25  Identities=36%  Similarity=0.562  Sum_probs=23.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHH
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAK   61 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~   61 (102)
                      ++.+.+|+.++|+||||||||||++
T Consensus         3 sl~i~~gei~~l~G~nGsGKSTl~~   27 (171)
T 4gp7_A            3 KLTIPELSLVVLIGSSGSGKSTFAK   27 (171)
T ss_dssp             EEEEESSEEEEEECCTTSCHHHHHH
T ss_pred             cccCCCCEEEEEECCCCCCHHHHHH
Confidence            4667899999999999999999999

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.95  E-value=1.4e-10  Score=79.52  Aligned_cols=31  Identities=16%  Similarity=0.090  Sum_probs=28.5

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +.++++++|.||||||||||+++|++++.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~  117 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW  117 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence            6789999999999999999999999998763

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.94  E-value=1.8e-09  Score=74.23  Aligned_cols=60  Identities=27%  Similarity=0.362  Sum_probs=44.9

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      ..++++++.|.+.+++.+...+.....     .  + .+.+.++|+||||+|||||+++|++.+....
T Consensus        20 r~~~l~~~~g~~~~~~~l~~~i~~~~~-----~--~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~   79 (334)
T 1in4_A           20 RPKSLDEFIGQENVKKKLSLALEAAKM-----R--G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNI   79 (334)
T ss_dssp             SCSSGGGCCSCHHHHHHHHHHHHHHHH-----H--T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred             CCccHHHccCcHHHHHHHHHHHHHHHh-----c--C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            467889999988888877766543210     0  1 2346899999999999999999999986543

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.94  E-value=8.6e-10  Score=70.58  Aligned_cols=30  Identities=37%  Similarity=0.622  Sum_probs=25.4

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ...+++.++|+|||||||||++++|++.+.
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g   54 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADETG   54 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            345789999999999999999999999874

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.94  E-value=3.5e-11  Score=77.19  Aligned_cols=54  Identities=22%  Similarity=0.230  Sum_probs=35.5

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      |+.++|+||||||||||+++|++++. ..+ +..........  ...+.+++|++|+.
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~   54 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL   54 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence            57899999999999999999999986 544 43332211111  11234567777653

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.94  E-value=1.2e-09  Score=79.10  Aligned_cols=76  Identities=22%  Similarity=0.295  Sum_probs=55.6

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCC-hHHHHhcCC---CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTH-PEYYEEMGI---KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~-~~~~~~~~i---~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      .+++|+++.|.+..++.|++.+...... +..+...+.   .....++|+||+|+||||++++++..+......++..+.
T Consensus        34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~  113 (516)
T 1sxj_A           34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV  113 (516)
T ss_dssp             CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            4678999999999999999887642111 111111121   245689999999999999999999999887777766543

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.94  E-value=1e-09  Score=70.73  Aligned_cols=38  Identities=32%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCc---cEEEEccc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSA---TFLRVVGS   77 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~---~~~~i~~~   77 (102)
                      ..+++.++|+||||||||||+++|++++.+   ..+.+...
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d   59 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD   59 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence            467999999999999999999999999874   35555543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.93  E-value=1.6e-10  Score=79.91  Aligned_cols=64  Identities=19%  Similarity=0.084  Sum_probs=42.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE--ccchhhhhcc--CchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV--VGSELIQKYL--GDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i--~~~~~~~~~~--~~~~~~~~~~~~~q~~  100 (102)
                      ++.+.+++.++|+||||||||||+++|++++.+..+.+  ...+......  .....+.++++++|++
T Consensus        49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~  116 (337)
T 2qm8_A           49 LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDR  116 (337)
T ss_dssp             GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCT
T ss_pred             CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCc
Confidence            35678999999999999999999999999887654333  3333322111  0011234577777764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.92  E-value=1.1e-10  Score=79.49  Aligned_cols=37  Identities=22%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +..++.++|+||||+|||||+++|+|+..+..+.+..
T Consensus       166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~  202 (301)
T 1u0l_A          166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  202 (301)
T ss_dssp             HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             HhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence            3468899999999999999999999999998887764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.92  E-value=4e-10  Score=82.14  Aligned_cols=55  Identities=22%  Similarity=0.227  Sum_probs=39.0

Q ss_pred             HHHHHHhhhhcCChH-HHHhc-CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         19 QEIKESVELPLTHPE-YYEEM-GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        19 ~~i~~~~~~~~~~~~-~~~~~-~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .++.+.+.+.+.... ...++ .+.+|+.++|+||||||||||+++|+|++.|+.|.
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~   77 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG   77 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred             hhHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            334444544443321 23444 47899999999999999999999999999887665

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.92  E-value=2.6e-10  Score=82.17  Aligned_cols=40  Identities=13%  Similarity=0.073  Sum_probs=35.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+ ++++|+||||||||||+++|+|++.|+.|.+...
T Consensus        24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~   63 (483)
T 3euj_A           24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFR   63 (483)
T ss_dssp             EEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCC
T ss_pred             EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence            567888 9999999999999999999999999987766544

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.92  E-value=3.4e-09  Score=72.34  Aligned_cols=66  Identities=15%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      +.+|+++.|.+..++.+...+......        -.+...++|+||+|+|||+++++++......+..++...
T Consensus        25 p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~   90 (338)
T 3pfi_A           25 PSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM   90 (338)
T ss_dssp             CCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence            568999999999999998887643211        123457999999999999999999999887777766543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.91  E-value=1.4e-09  Score=74.99  Aligned_cols=36  Identities=28%  Similarity=0.312  Sum_probs=31.0

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      ..+|++++|+|||||||||+++.|++++.+..+.+.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~  161 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV  161 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEE
Confidence            367899999999999999999999999887655443

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.91  E-value=3.5e-10  Score=73.85  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHH-hhhC
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVA-NQTS   68 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~-~~~~   68 (102)
                      .++.+.+|+.++|+|||||||||++++|+ ++++
T Consensus        20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~   53 (231)
T 3lnc_A           20 GSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN   53 (231)
T ss_dssp             --CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred             CCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            46778899999999999999999999999 9873

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.90  E-value=3.4e-10  Score=82.55  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      ..+|++++|+||||||||||+++|+|++.|+.|.+
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            45799999999999999999999999999887765

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.89  E-value=9e-10  Score=72.60  Aligned_cols=32  Identities=13%  Similarity=0.140  Sum_probs=26.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +|.+.++..++|.|||||||||++++|++++.
T Consensus        19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             ----CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            56788999999999999999999999999764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.88  E-value=4.7e-10  Score=82.84  Aligned_cols=36  Identities=25%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      .+.+|+.++|+||||||||||+++|+|++.|+.|.+
T Consensus        99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            467899999999999999999999999999987766

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.88  E-value=2.1e-09  Score=72.16  Aligned_cols=71  Identities=20%  Similarity=0.334  Sum_probs=51.3

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      +++.|.++.++.+...+..++....+...+. -..+..++|+||+|+|||+++++++..+......++..+.
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~   86 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   86 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence            4589999999999888765332221111111 1245689999999999999999999999888777776554

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.88  E-value=1.6e-09  Score=69.04  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=27.8

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      .+.+|+.++|+|||||||||+++.|++.+.+..
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~   34 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSY   34 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCe
Confidence            567899999999999999999999999885543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.87  E-value=4.3e-10  Score=78.32  Aligned_cols=43  Identities=19%  Similarity=0.258  Sum_probs=36.7

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      -++.+.+|+.++|+||||||||||+++|++++++..+.+...+
T Consensus       168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~  210 (361)
T 2gza_A          168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIED  210 (361)
T ss_dssp             HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEES
T ss_pred             HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECC
Confidence            4567889999999999999999999999999988766665443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.87  E-value=7.7e-10  Score=71.00  Aligned_cols=28  Identities=39%  Similarity=0.673  Sum_probs=23.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++++.++|+||||||||||+++|+++++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4678999999999999999999999875

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.87  E-value=2.5e-10  Score=78.76  Aligned_cols=41  Identities=27%  Similarity=0.274  Sum_probs=35.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ++.+.+++.++|+||||||||||+++|++++++..+.+...
T Consensus       165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~  205 (330)
T 2pt7_A          165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE  205 (330)
T ss_dssp             HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred             hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence            45677899999999999999999999999998876665544

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.86  E-value=2.8e-09  Score=72.62  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC--ccEEEEcc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS--ATFLRVVG   76 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~--~~~~~i~~   76 (102)
                      .+++.++|+||||||||||+++|++++.  +..+.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v  115 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL  115 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence            6789999999999999999999999987  66554433

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=98.85  E-value=1.7e-09  Score=75.16  Aligned_cols=39  Identities=18%  Similarity=0.259  Sum_probs=34.9

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +.+.+|+.++|+||||||||||+++|++...++.+.+..
T Consensus        66 l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~  104 (347)
T 2obl_A           66 LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL  104 (347)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence            678899999999999999999999999999988766543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.85  E-value=8.6e-09  Score=70.02  Aligned_cols=63  Identities=25%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .+++|+++.|.++.++.+++.+..            -..+..+++.||+|+|||+++++++..+......++..+
T Consensus        21 rP~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~   83 (324)
T 3u61_B           21 RPSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD   83 (324)
T ss_dssp             CCCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred             CCCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence            467899999999999999887751            123356788899999999999999999988887777544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.84  E-value=9.7e-10  Score=81.13  Aligned_cols=35  Identities=34%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .+.+|+.++|+||||||||||+++|+|++.|+.|.
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            47899999999999999999999999999887665

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.82  E-value=1.5e-09  Score=70.03  Aligned_cols=31  Identities=32%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ++++|+.++|+||||||||||+++|++...+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            5789999999999999999999999996544

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=98.81  E-value=4.7e-09  Score=72.64  Aligned_cols=71  Identities=21%  Similarity=0.244  Sum_probs=51.0

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHh-cCC-CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEE-MGI-KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI   80 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~-~~i-~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~   80 (102)
                      .|.|.+..++.+...+...+........ ... .++..++|+||||||||+++++|+..+..+++.++..++.
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~   88 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT   88 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence            3689999999998888543322111000 111 2567899999999999999999999998888888766543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.81  E-value=1.5e-09  Score=68.54  Aligned_cols=35  Identities=17%  Similarity=0.110  Sum_probs=29.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccch
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGSE   78 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~~   78 (102)
                      +.++|+||||||||||++.|++++.+.   .+.+..+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg   40 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA   40 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence            578999999999999999999999886   77776554

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.81  E-value=1.3e-08  Score=63.17  Aligned_cols=50  Identities=22%  Similarity=0.347  Sum_probs=41.0

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...|+++.|.++.++.+.+.+..             ..+..++|+||+|+|||++++.++..+
T Consensus        18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999988888776532             345679999999999999999999876

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.81  E-value=1.5e-09  Score=75.86  Aligned_cols=42  Identities=17%  Similarity=0.277  Sum_probs=35.4

Q ss_pred             HHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc-EEEE
Q psy16321         33 EYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT-FLRV   74 (102)
Q Consensus        33 ~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~-~~~i   74 (102)
                      +.+.++.+.+++.++|+|||||||||++++|++++++. .+.+
T Consensus       126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I  168 (372)
T 2ewv_A          126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI  168 (372)
T ss_dssp             SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred             HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence            34566668899999999999999999999999998875 4555

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.81  E-value=2.2e-08  Score=68.91  Aligned_cols=68  Identities=25%  Similarity=0.337  Sum_probs=49.1

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc--cEEEEccchhhh
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA--TFLRVVGSELIQ   81 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~--~~~~i~~~~~~~   81 (102)
                      .+|+++.|.+..++.+.......       . -...++..++|+||+|+|||+++++++..+..  +...+....+..
T Consensus        41 ~~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~  110 (368)
T 3uk6_A           41 QASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS  110 (368)
T ss_dssp             SEETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred             cchhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence            34999999999988776554321       1 12244679999999999999999999998875  345555544433

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.80  E-value=5e-09  Score=66.96  Aligned_cols=37  Identities=30%  Similarity=0.373  Sum_probs=28.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      ++.+.+++.++|+|||||||||+++.|+..+....+.
T Consensus        19 ~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~   55 (199)
T 3vaa_A           19 YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFID   55 (199)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred             eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence            4567788999999999999999999999988766543

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.79  E-value=6.5e-10  Score=73.78  Aligned_cols=27  Identities=33%  Similarity=0.473  Sum_probs=23.9

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++..++|.|||||||||++++|+..+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            567899999999999999999999443

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.79  E-value=9.7e-09  Score=72.04  Aligned_cols=34  Identities=26%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ++++++++.++|+||||||||||+++|++.....
T Consensus       163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~  196 (377)
T 1svm_A          163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGK  196 (377)
T ss_dssp             HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence            3578999999999999999999999999986543

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=98.78  E-value=1.6e-08  Score=70.27  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=49.6

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHH------------------HhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYY------------------EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~------------------~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      .+.|.+..++.|...+...+......                  ... ..+...++|+||+|+|||+++++++..+..++
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~-~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~  100 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEV-ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI  100 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHT-TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccc-ccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            47899999999988874333222210                  111 23456799999999999999999999988777


Q ss_pred             EEEccchh
Q psy16321         72 LRVVGSEL   79 (102)
Q Consensus        72 ~~i~~~~~   79 (102)
                      ..++...+
T Consensus       101 ~~~~~~~~  108 (376)
T 1um8_A          101 AISDATSL  108 (376)
T ss_dssp             EEEEGGGC
T ss_pred             EEecchhh
Confidence            77765543

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=98.78  E-value=9.9e-09  Score=69.43  Aligned_cols=66  Identities=26%  Similarity=0.395  Sum_probs=50.9

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      .+.+|+++.|.+..++.+.+.+....       ... .....++|+||+|+|||+++++++.........+...
T Consensus         7 ~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~   72 (324)
T 1hqc_A            7 RPKTLDEYIGQERLKQKLRVYLEAAK-------ARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP   72 (324)
T ss_dssp             CCCSTTTCCSCHHHHHHHHHHHHHHH-------HHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTT
T ss_pred             CcccHHHhhCHHHHHHHHHHHHHHHH-------ccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEecc
Confidence            46689999999999999888775421       101 2346899999999999999999999887766666544

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.76  E-value=3.3e-09  Score=73.69  Aligned_cols=36  Identities=25%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             HhcCCCC--CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         36 EEMGIKP--PKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        36 ~~~~i~~--~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      -++.+.+  ++.++|+||||||||||+++|+|++++..
T Consensus       161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            4456777  99999999999999999999999999887

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.75  E-value=6e-09  Score=65.73  Aligned_cols=28  Identities=18%  Similarity=0.415  Sum_probs=25.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+++.++|+||||||||||+++|++..+
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3578999999999999999999999875

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.75  E-value=2.7e-09  Score=74.30  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=30.9

Q ss_pred             HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         34 YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        34 ~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .+.++...+++.++|+|||||||||++++|++++++.
T Consensus       114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~  150 (356)
T 3jvv_A          114 VFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT  150 (356)
T ss_dssp             HHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence            4445555678899999999999999999999998765

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.75  E-value=8.4e-09  Score=64.09  Aligned_cols=29  Identities=31%  Similarity=0.663  Sum_probs=25.9

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +..++|+|||||||||+++.|++.+.+..
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~   32 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF   32 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            56899999999999999999999887644

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.74  E-value=1.5e-08  Score=69.46  Aligned_cols=53  Identities=26%  Similarity=0.389  Sum_probs=41.5

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+.+|+++.|.+.+++.|+..+..          -.++   .++|+||||+||||+++++++.+.+
T Consensus        20 rp~~~~~~~g~~~~~~~L~~~i~~----------g~~~---~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           20 RPETLDEVYGQNEVITTVRKFVDE----------GKLP---HLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             CCSSGGGCCSCHHHHHHHHHHHHT----------TCCC---CEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             CCCcHHHhcCcHHHHHHHHHHHhc----------CCCc---eEEEECCCCCCHHHHHHHHHHHHcC
Confidence            467899999999888888776642          0111   3899999999999999999998643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.74  E-value=2.1e-08  Score=62.25  Aligned_cols=50  Identities=24%  Similarity=0.326  Sum_probs=40.4

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...|+++.|.+..++.+.+.+..             .....++|+||+|+|||++++.++..+
T Consensus        18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           18 AGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             ccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            35688999999888877766532             335678999999999999999999876

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.73  E-value=7.7e-10  Score=75.36  Aligned_cols=36  Identities=22%  Similarity=0.214  Sum_probs=30.1

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +..++.++|+||||+|||||+++|+ +..+..+.+..
T Consensus       162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~  197 (302)
T 2yv5_A          162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE  197 (302)
T ss_dssp             HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred             hccCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence            3468899999999999999999999 88888777654

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.73  E-value=5.9e-09  Score=77.00  Aligned_cols=31  Identities=29%  Similarity=0.343  Sum_probs=27.9

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      |++++|+||||||||||+++|+|+.+|+.|.
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            3789999999999999999999999887653

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.72  E-value=2.6e-09  Score=75.79  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      .+++.++|+|||||||||++++|++++++..+.|
T Consensus       165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I  198 (418)
T 1p9r_A          165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI  198 (418)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred             hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence            5778999999999999999999999988764443

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.71  E-value=1.1e-09  Score=77.64  Aligned_cols=31  Identities=16%  Similarity=0.194  Sum_probs=27.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      .++|+||||+|||||+++|+|+..+..+.+.
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~  101 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAK  101 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence            9999999999999999999999887766554

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.71  E-value=7.1e-10  Score=81.81  Aligned_cols=56  Identities=14%  Similarity=0.102  Sum_probs=30.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc-cEEEEccchhh--hhc-cCchHHHHHHccchhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA-TFLRVVGSELI--QKY-LGDGPKLVRVALVPEVR  100 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~-~~~~i~~~~~~--~~~-~~~~~~~~~~~~~~q~~  100 (102)
                      .++|+||||||||||+++|+|+..| ..|.+...+..  ... ....+.+..++|++|+.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~  106 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEI  106 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---C
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccc
Confidence            3999999999999999999999877 56766544321  111 11112234567777653

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.71  E-value=1.1e-08  Score=65.42  Aligned_cols=32  Identities=22%  Similarity=0.171  Sum_probs=28.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++...+++.++|+|||||||||++++|++.+.
T Consensus        19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           19 RLLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             HHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34457899999999999999999999999875

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.70  E-value=3.4e-08  Score=70.58  Aligned_cols=61  Identities=28%  Similarity=0.419  Sum_probs=48.4

Q ss_pred             ccccccccCChHHHH---HHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321          4 SYKALKKRGSLDVQI---QEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~---~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      .+++|+++.|.+..+   +.|+..+...             ....++|+||+|+||||++++|+......+..++..
T Consensus        21 rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~   84 (447)
T 3pvs_A           21 RPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAV   84 (447)
T ss_dssp             CCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETT
T ss_pred             CCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEec
Confidence            357899999999888   6666655421             124799999999999999999999998888777654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.70  E-value=3.2e-09  Score=68.42  Aligned_cols=31  Identities=32%  Similarity=0.419  Sum_probs=27.6

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ++.+|+.++|+||||||||||++.+++...+
T Consensus        19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~   49 (235)
T 2w0m_A           19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLR   49 (235)
T ss_dssp             SEETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4788999999999999999999999987643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.68  E-value=1.3e-08  Score=65.56  Aligned_cols=29  Identities=28%  Similarity=0.433  Sum_probs=26.5

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+|+.++|+|||||||||+++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            56889999999999999999999998765

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.68  E-value=2.5e-08  Score=73.40  Aligned_cols=52  Identities=27%  Similarity=0.434  Sum_probs=42.9

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ..+.|+++.|.+..++.+...+.               .++.++|+|||||||||++++|++++++.
T Consensus        36 rp~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           36 PEKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             CSSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             cccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            45678899998888877665542               45799999999999999999999998765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.68  E-value=4.5e-09  Score=76.24  Aligned_cols=38  Identities=21%  Similarity=0.198  Sum_probs=32.0

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      +.+..++.++|+|||||||||++++|+++.++..+.+.
T Consensus       255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giit  292 (511)
T 2oap_1          255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVS  292 (511)
T ss_dssp             HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred             HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEE
Confidence            44568899999999999999999999999988754443

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.68  E-value=2.3e-08  Score=61.62  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=25.2

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +++.++|+||||+|||||++++++.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            788999999999999999999999874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.68  E-value=4.9e-08  Score=61.90  Aligned_cols=50  Identities=36%  Similarity=0.414  Sum_probs=40.9

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...|+++.|.++.++.+++.+...             ....++|+||+|+|||++++.++..+
T Consensus        13 p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           13 PRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999988876431             22349999999999999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.66  E-value=1.2e-08  Score=72.52  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             HHhcCCCCCce--eEEECCCCCChhHHHHHHHhhh
Q psy16321         35 YEEMGIKPPKG--VILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        35 ~~~~~i~~~~~--~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..++.+.+|+.  ++|+||||+|||||+++|+|..
T Consensus        32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           32 LVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             CCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            34678999999  9999999999999999999973

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.65  E-value=2.7e-08  Score=61.97  Aligned_cols=29  Identities=34%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+++.++|+|||||||||+++.|++.+..
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~   34 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA   34 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence            35789999999999999999999998754

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=98.65  E-value=1.4e-08  Score=81.75  Aligned_cols=63  Identities=21%  Similarity=0.220  Sum_probs=43.9

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCC----------hHHHHh---------------c---CCCCCceeEEECCCCCCh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTH----------PEYYEE---------------M---GIKPPKGVILYGPPGTGK   56 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~----------~~~~~~---------------~---~i~~~~~~~l~Gp~GsGK   56 (102)
                      .++|++++|+++.++++.+.+.+++.+          ++.+..               +   +++.|+.++++||+||||
T Consensus      1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A         1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp             --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred             CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence            478999999999999999999988843          333333               1   145778899999999999


Q ss_pred             hHHHHHHHhhh
Q psy16321         57 TLLAKAVANQT   67 (102)
Q Consensus        57 Stl~~~i~~~~   67 (102)
                      |+|+++++...
T Consensus      1096 T~la~~~~~~~ 1106 (1706)
T 3cmw_A         1096 TTLTLQVIAAA 1106 (1706)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.65  E-value=7.5e-08  Score=61.59  Aligned_cols=53  Identities=15%  Similarity=0.249  Sum_probs=42.4

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ....|+++.|.+..++.+.+.+...            ..+..++|+||+|+||||+++.++..+.
T Consensus        18 ~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           18 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             CCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567899999999999888876431            1234789999999999999999998654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.65  E-value=5.2e-09  Score=68.88  Aligned_cols=31  Identities=23%  Similarity=0.407  Sum_probs=25.9

Q ss_pred             CCceeEEECCCCCChhHHHHHHH---hhhCccEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVA---NQTSATFL   72 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~---~~~~~~~~   72 (102)
                      .++.++|+|||||||||++++|+   |+..++.+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G   59 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG   59 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH
Confidence            46899999999999999999999   66555433

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=98.63  E-value=6.8e-08  Score=63.95  Aligned_cols=62  Identities=23%  Similarity=0.230  Sum_probs=41.4

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccch
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGSE   78 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~~   78 (102)
                      .+|+++.|.+..+..+.+.+....           ..+..++|+||+|+|||+++++|+....   .++..++...
T Consensus         3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~   67 (265)
T 2bjv_A            3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA   67 (265)
T ss_dssp             -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred             cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence            378999999988888877665422           2346899999999999999999998764   3456665543

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.63  E-value=4.3e-10  Score=74.04  Aligned_cols=38  Identities=16%  Similarity=0.114  Sum_probs=29.8

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      +++.+ ++++|+||||||||||+++|++++.+..+.+..
T Consensus        23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~   60 (227)
T 1qhl_A           23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF   60 (227)
T ss_dssp             ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred             EEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence            44443 678999999999999999999999887655543

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.63  E-value=2.5e-08  Score=68.04  Aligned_cols=52  Identities=27%  Similarity=0.415  Sum_probs=41.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+.+|+++.|.++.++.+...+..             .....++|+||+|+||||+++++++.+.
T Consensus        32 ~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           32 RPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456889999999988888776542             1112489999999999999999999754

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.62  E-value=1.5e-08  Score=68.24  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=30.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ++++.+|+.++|.||||+|||||++.|++...+.
T Consensus        29 ~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~   62 (296)
T 1cr0_A           29 TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA   62 (296)
T ss_dssp             HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999987654

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.62  E-value=1.8e-08  Score=63.22  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=26.3

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +.+.++ ..+|+|||||||||++++|..++.+
T Consensus        22 ~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           22 IPFSKG-FTAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             EecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence            455555 8899999999999999999997754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.61  E-value=8.5e-09  Score=76.64  Aligned_cols=24  Identities=42%  Similarity=0.559  Sum_probs=22.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHH
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      +|++++|+.++|+||||||||||+
T Consensus        38 sl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           38 DVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEEEETTSEEEEECSTTSSHHHHH
T ss_pred             EEEECCCCEEEEECCCCCCHHHHh
Confidence            567899999999999999999998

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.61  E-value=3.2e-08  Score=63.87  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=26.7

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +++...+++.++|+||||+|||||++.|++..+
T Consensus        12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ----CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456666899999999999999999999998765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.59  E-value=2.6e-08  Score=66.30  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=31.8

Q ss_pred             hcCCCC---CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         37 EMGIKP---PKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        37 ~~~i~~---~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      ++.+.+   ++.++|+|++||||||+++.|++.+....+.
T Consensus        39 ~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d   78 (250)
T 3nwj_A           39 AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFD   78 (250)
T ss_dssp             HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence            466777   9999999999999999999999988765543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.58  E-value=1.7e-07  Score=62.24  Aligned_cols=66  Identities=23%  Similarity=0.347  Sum_probs=43.8

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      +.+.|.+...+.+.......   ..........+...++|+||+|+|||+++++++.....++..+...
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~   98 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP   98 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECG
T ss_pred             cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCH
Confidence            34556665555554431110   1222333345677899999999999999999999988877777554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.58  E-value=1.2e-08  Score=74.68  Aligned_cols=33  Identities=27%  Similarity=0.280  Sum_probs=29.4

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      .+.+|+.++|+|+|||||||++++|++.+.+..
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~  397 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMG  397 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence            356899999999999999999999999987654

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.58  E-value=2.4e-08  Score=63.04  Aligned_cols=25  Identities=40%  Similarity=0.537  Sum_probs=22.2

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++.++|+|||||||||+++.|++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCcHHHHHHHHhccc
Confidence            4678999999999999999999843

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.57  E-value=4.6e-09  Score=71.90  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=25.0

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      .+.+|+.++|+||||+|||||+++|++...+..+.+..
T Consensus       169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~  206 (307)
T 1t9h_A          169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  206 (307)
T ss_dssp             GGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence            35579999999999999999999999998887776653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.57  E-value=2.7e-08  Score=69.39  Aligned_cols=35  Identities=23%  Similarity=0.227  Sum_probs=28.7

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC-ccEEEEcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS-ATFLRVVG   76 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~-~~~~~i~~   76 (102)
                      +|+.++|+||||+|||||+++|+|... +..+.+..
T Consensus       214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~  249 (358)
T 2rcn_A          214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN  249 (358)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred             CCCEEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence            688999999999999999999999988 77666643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.57  E-value=1.1e-07  Score=57.88  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=39.3

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccch
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSE   78 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~~   78 (102)
                      ++.|-+..+.++.+.+...           ...+..++|+||+|||||+++++|+...   ..++. ++...
T Consensus         2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~   61 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELT   61 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECC
T ss_pred             CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCC
Confidence            4667777777777666432           1345679999999999999999999875   23344 55443

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.57  E-value=4e-09  Score=73.89  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=27.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++.+.+| .++|+||||||||||+++|.+++.
T Consensus        55 ~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           55 ELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             EEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567888 999999999999999999988775

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=98.57  E-value=1.3e-07  Score=63.65  Aligned_cols=51  Identities=25%  Similarity=0.341  Sum_probs=41.6

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+.+|+++.|.+..++.++..+...             ....++|+||+|+||||++++++..+
T Consensus        20 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l   70 (327)
T 1iqp_A           20 RPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALAREL   70 (327)
T ss_dssp             CCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            3567999999999999988776421             12259999999999999999999875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.57  E-value=3.3e-08  Score=64.18  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=26.1

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++++|+.++|+||||+|||||++.+++.
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999999999994

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.56  E-value=2.2e-07  Score=62.43  Aligned_cols=63  Identities=25%  Similarity=0.389  Sum_probs=43.8

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcC--CCCCceeEEECCCCCChhHHHHHHHhhhCcc---EEEEccc
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVANQTSAT---FLRVVGS   77 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~---~~~i~~~   77 (102)
                      +++.|.+..++.+...+....      ..+.  -.+...++|+||||||||+++++|+..+...   ...+...
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~   84 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   84 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHH------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred             hhcCCHHHHHHHHHHHHHHHh------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence            467788888888888775421      1111  1234579999999999999999999987432   4555443

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.55  E-value=7.9e-08  Score=59.87  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=27.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      +..+.|.|+|||||||+++.|+..++...+.+.
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~   35 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEec
Confidence            467899999999999999999998776555443

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=98.54  E-value=1.3e-07  Score=64.46  Aligned_cols=54  Identities=22%  Similarity=0.206  Sum_probs=39.4

Q ss_pred             ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321          8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus         8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      ++++.|.++.++.+...+.               .+..++|+||||+|||+++++++..+......+..
T Consensus        26 ~~~i~g~~~~~~~l~~~l~---------------~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~   79 (331)
T 2r44_A           26 GKVVVGQKYMINRLLIGIC---------------TGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF   79 (331)
T ss_dssp             TTTCCSCHHHHHHHHHHHH---------------HTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ccceeCcHHHHHHHHHHHH---------------cCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence            4556666666655544332               14689999999999999999999988777665554

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.54  E-value=3.8e-08  Score=63.02  Aligned_cols=31  Identities=19%  Similarity=0.149  Sum_probs=27.2

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ..++..++|.|||||||||+++.|++.+.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~   49 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            4678899999999999999999999987543

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=98.53  E-value=3.9e-08  Score=68.21  Aligned_cols=30  Identities=33%  Similarity=0.414  Sum_probs=28.2

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++++|+.+.|+||||||||||++.+++..
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999999999987

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=98.53  E-value=2.5e-07  Score=62.53  Aligned_cols=37  Identities=30%  Similarity=0.541  Sum_probs=28.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ..+..++|.|||||||||+++.|+..++.....++.+
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D   67 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDND   67 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Confidence            4567899999999999999999998764344555543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=98.53  E-value=1.2e-07  Score=63.62  Aligned_cols=51  Identities=37%  Similarity=0.430  Sum_probs=41.1

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+.+|+++.|.+..++.+++.+..             .....++|+||+|+|||+++++++..+
T Consensus        12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l   62 (319)
T 2chq_A           12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDL   62 (319)
T ss_dssp             SCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred             CCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence            467899999999999988876542             112248999999999999999999875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.53  E-value=1.7e-07  Score=64.25  Aligned_cols=60  Identities=22%  Similarity=0.285  Sum_probs=45.6

Q ss_pred             ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh------CccEEEEcc
Q psy16321          8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT------SATFLRVVG   76 (102)
Q Consensus         8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~------~~~~~~i~~   76 (102)
                      .+++.|-++.++.+.+.+.....         -..+..++|+||+|+|||||++.+++..      ....+.+++
T Consensus        19 p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~   84 (386)
T 2qby_A           19 PDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT   84 (386)
T ss_dssp             CSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence            47889999999988877643211         1456789999999999999999999977      444555553

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=98.53  E-value=9.3e-08  Score=65.18  Aligned_cols=52  Identities=17%  Similarity=0.150  Sum_probs=38.5

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +..+|+++.|.+..+..+......             .....++|+||+|+|||+++++++....
T Consensus        19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence            346899999999876654332211             1223599999999999999999999775

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.53  E-value=2.2e-07  Score=63.70  Aligned_cols=61  Identities=23%  Similarity=0.312  Sum_probs=46.3

Q ss_pred             ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh---------CccEEEEccc
Q psy16321          8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT---------SATFLRVVGS   77 (102)
Q Consensus         8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~---------~~~~~~i~~~   77 (102)
                      .+++.|.++.++.+.+.+.....         -..+..++|+||+|+||||+++.++..+         ......+++.
T Consensus        18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~   87 (387)
T 2v1u_A           18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR   87 (387)
T ss_dssp             CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            37899999999988887643221         2456789999999999999999999877         4455556543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=98.52  E-value=3.1e-08  Score=60.33  Aligned_cols=58  Identities=21%  Similarity=0.245  Sum_probs=40.6

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      ++.|.+..++.+++.+....           .....++|+||+|+|||+++++|+.... ++..++..++
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~   62 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY   62 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred             CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence            45677788888877765321           2346799999999999999999998766 5555554443

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.52  E-value=9.5e-08  Score=61.66  Aligned_cols=28  Identities=32%  Similarity=0.452  Sum_probs=24.6

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +..++|+|||||||||+++.|++.++..
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~   32 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWH   32 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4579999999999999999999987643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.52  E-value=2.7e-08  Score=76.76  Aligned_cols=29  Identities=34%  Similarity=0.626  Sum_probs=26.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++.+.+|+.++|+||||||||||+++|++
T Consensus       455 sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          455 QLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            45678999999999999999999999995

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.51  E-value=2.6e-07  Score=63.40  Aligned_cols=54  Identities=15%  Similarity=0.247  Sum_probs=43.4

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+.+|+++.|.+..++.+++.+...            ..+..++|+||+|+||||++++++..+..
T Consensus        11 rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           11 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4578999999999999988876421            12346899999999999999999987654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.51  E-value=2.5e-07  Score=63.71  Aligned_cols=50  Identities=18%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +++.|.++.++.+.+.+.....         -..+..++|+||+|+||||+++.++..+
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999887754222         1345689999999999999999999876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.50  E-value=5.9e-08  Score=66.34  Aligned_cols=32  Identities=28%  Similarity=0.347  Sum_probs=28.0

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ...+++.++++||||+||||++..|++.+.+.
T Consensus       100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~  131 (306)
T 1vma_A          100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE  131 (306)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence            34678899999999999999999999988654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.49  E-value=1.2e-07  Score=59.87  Aligned_cols=36  Identities=31%  Similarity=0.485  Sum_probs=28.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhh-hCccEE
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ-TSATFL   72 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~-~~~~~~   72 (102)
                      ++....+..++|+|++||||||+++.|+.. +....+
T Consensus         4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~i   40 (184)
T 1y63_A            4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHL   40 (184)
T ss_dssp             --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred             CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEe
Confidence            345566788999999999999999999987 554443

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=98.49  E-value=2e-07  Score=66.75  Aligned_cols=50  Identities=28%  Similarity=0.393  Sum_probs=40.5

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...++.+.|-++.+..+.+.+..             .....++|+||||+|||+++++++..+
T Consensus       176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34678999999998888776542             233478999999999999999999976

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.49  E-value=3.1e-07  Score=63.19  Aligned_cols=58  Identities=22%  Similarity=0.269  Sum_probs=44.0

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCc--eeEEECCCCCChhHHHHHHHhhhCc----cEEEEc
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPK--GVILYGPPGTGKTLLAKAVANQTSA----TFLRVV   75 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~--~~~l~Gp~GsGKStl~~~i~~~~~~----~~~~i~   75 (102)
                      +++.|-++.++.+.+.+......         ..+.  .++|+||+|+||||+++.+++.+..    ....++
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            78999999999988877542211         2344  8999999999999999999998743    344554

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.48  E-value=1.5e-07  Score=58.87  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=27.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVV   75 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~   75 (102)
                      .+|..++|.|++||||||+++.|++.+   ..+.+.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d   40 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   40 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence            357889999999999999999999987   43444444

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.48  E-value=5.4e-07  Score=58.00  Aligned_cols=50  Identities=20%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             ccccccCCh---HHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          6 KALKKRGSL---DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         6 ~~~~~i~g~---~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+|+++.+-   ...++.++.....             ..+..++|+||+|+||||++++++..+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            577888762   3444444443321             2467899999999999999999998764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=98.48  E-value=1.8e-07  Score=61.89  Aligned_cols=39  Identities=23%  Similarity=0.424  Sum_probs=30.6

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      ...+..++|+|||||||||+++.|+..+......+..+.
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~   67 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDS   67 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHH
Confidence            456788999999999999999999998764444444443

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.48  E-value=1.2e-07  Score=60.69  Aligned_cols=29  Identities=24%  Similarity=0.177  Sum_probs=26.2

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+.++..++|.|||||||||+++.|++.+
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            35678899999999999999999999976

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.48  E-value=2.8e-08  Score=63.26  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             HHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..++.+.++..++|+|+||+|||||++++++..
T Consensus        18 l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           18 IRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             GGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             HhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344888999999999999999999999999876

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.47  E-value=4.7e-07  Score=61.53  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccchh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSEL   79 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~~~   79 (102)
                      .+..++|+||+|+||||++++++..+   ......++..+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~   76 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   76 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence            45689999999999999999999987   455666665544

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.46  E-value=4.4e-08  Score=67.01  Aligned_cols=24  Identities=33%  Similarity=0.445  Sum_probs=22.3

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.++|+|+||||||||++.|.+..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            578999999999999999999986

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.44  E-value=1.3e-07  Score=60.50  Aligned_cols=27  Identities=37%  Similarity=0.501  Sum_probs=25.7

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++++|+.++|+||||+|||||++.+++
T Consensus        16 gi~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           16 GFAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999999999999998

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.44  E-value=8.6e-08  Score=62.57  Aligned_cols=28  Identities=25%  Similarity=0.291  Sum_probs=25.8

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ...+|..++|.||+||||||++++|++.
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            4577899999999999999999999998

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.43  E-value=3.1e-07  Score=69.03  Aligned_cols=50  Identities=28%  Similarity=0.393  Sum_probs=40.9

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...++++.|.++.++.+.+.+..             .....++|+||||+|||+++++++..+
T Consensus       176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34688999999999888776542             234568999999999999999999986

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.43  E-value=6.6e-08  Score=65.60  Aligned_cols=29  Identities=28%  Similarity=0.469  Sum_probs=26.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ..+..++|.||+|||||||++.|++++.+
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            56789999999999999999999998865

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.42  E-value=1.9e-07  Score=59.77  Aligned_cols=29  Identities=28%  Similarity=0.463  Sum_probs=26.1

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..++..++|+|||||||||+++.|+..++
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            46789999999999999999999998764

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.42  E-value=2.3e-07  Score=57.16  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=24.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|.||+||||||+++.|+..++...+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i   30 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPII   30 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeee
Confidence            6889999999999999999988776544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=98.42  E-value=2.7e-07  Score=58.79  Aligned_cols=29  Identities=28%  Similarity=0.622  Sum_probs=25.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      ...++|.|+|||||||+++.|++.++...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~   46 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPF   46 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEE
Confidence            46899999999999999999999876543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.41  E-value=6.7e-07  Score=68.10  Aligned_cols=62  Identities=19%  Similarity=0.287  Sum_probs=44.6

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh----------CccEEEE
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT----------SATFLRV   74 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~----------~~~~~~i   74 (102)
                      ...++++.|.++.+..+.+.+..             .....++|+||||+|||+++++++..+          ......+
T Consensus       166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l  232 (854)
T 1qvr_A          166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL  232 (854)
T ss_dssp             TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred             cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence            34678899999888777765522             234568999999999999999999976          4455666


Q ss_pred             ccchh
Q psy16321         75 VGSEL   79 (102)
Q Consensus        75 ~~~~~   79 (102)
                      +...+
T Consensus       233 ~~~~l  237 (854)
T 1qvr_A          233 QMGSL  237 (854)
T ss_dssp             CC---
T ss_pred             ehHHh
Confidence            65544

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.41  E-value=9.2e-08  Score=74.21  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=22.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      |+.++|+||||+||||++|++ |+..
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHH
Confidence            789999999999999999999 7653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=98.39  E-value=3.3e-07  Score=57.56  Aligned_cols=33  Identities=36%  Similarity=0.550  Sum_probs=27.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      ..+..+.|.|++||||||+++.|+..++...+.
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~   35 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS   35 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence            456789999999999999999999877654433

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.39  E-value=4.4e-08  Score=72.82  Aligned_cols=28  Identities=29%  Similarity=0.335  Sum_probs=24.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ++++++|+.++|+||||||||||+++|.
T Consensus       342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            4567899999999999999999998654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.39  E-value=3.4e-07  Score=57.37  Aligned_cols=31  Identities=26%  Similarity=0.344  Sum_probs=26.7

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      +..++|+||+||||||+++.|+..++...+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~   35 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYD   35 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            5689999999999999999999988766544

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.39  E-value=5.7e-07  Score=60.41  Aligned_cols=50  Identities=20%  Similarity=0.228  Sum_probs=40.5

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +..|+++.|.+..++.+++.+..             .....++|+||+|+||||+++.++..+
T Consensus        17 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l   66 (323)
T 1sxj_B           17 PQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHEL   66 (323)
T ss_dssp             CSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            56789999999999988887642             111238999999999999999999875

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.39  E-value=1e-06  Score=66.09  Aligned_cols=49  Identities=16%  Similarity=0.236  Sum_probs=40.1

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..|+++.|.++.+..+.+.+..             ..+..++|+||+|+|||+++++++..+
T Consensus       183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l  231 (758)
T 1r6b_X          183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRI  231 (758)
T ss_dssp             TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence            4678899998888887776532             245688999999999999999999876

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.37  E-value=2.5e-07  Score=63.66  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=23.3

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      -+++|.|||||||||++++|++++.
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4799999999999999999999986

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.37  E-value=5.1e-07  Score=56.41  Aligned_cols=33  Identities=30%  Similarity=0.583  Sum_probs=27.3

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      ...+..++|.|++||||||+++.|+..++...+
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~   40 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYI   40 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEE
Confidence            345678999999999999999999987765443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.36  E-value=1.6e-07  Score=62.82  Aligned_cols=30  Identities=30%  Similarity=0.383  Sum_probs=27.0

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++++|+.++|+||||||||||++.+++...
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999999998653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.36  E-value=3.7e-07  Score=56.88  Aligned_cols=29  Identities=34%  Similarity=0.604  Sum_probs=25.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .++|.|||||||||+++.|+..+....+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d   34 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLD   34 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence            68999999999999999999988765443

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.36  E-value=3.3e-07  Score=58.43  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .++|+|||||||||+++.|++ +...
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~~   28 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGVP   28 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCc
Confidence            689999999999999999998 4443

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.36  E-value=2.5e-07  Score=65.43  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=28.4

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +.+.+++.++|+|||||||||++++|++++.+..
T Consensus        21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            4456688999999999999999999999887653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.36  E-value=9.8e-07  Score=56.00  Aligned_cols=25  Identities=48%  Similarity=0.672  Sum_probs=22.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..++|+||+|+|||+|+++++....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            7899999999999999999998763

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.35  E-value=3.5e-07  Score=60.64  Aligned_cols=30  Identities=30%  Similarity=0.472  Sum_probs=25.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      .++|+|||||||||+++.|+..++...+..
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~   32 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVAL   32 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence            678999999999999999999877655443

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=98.35  E-value=3.2e-07  Score=57.45  Aligned_cols=29  Identities=34%  Similarity=0.555  Sum_probs=24.9

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .+..++|.|++||||||+++.|+..+...
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~   31 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELGFK   31 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            46689999999999999999999876543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.35  E-value=1.4e-07  Score=64.87  Aligned_cols=33  Identities=27%  Similarity=0.215  Sum_probs=28.7

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +...+++.++++||||+||||++..|++.+.+.
T Consensus       100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~  132 (320)
T 1zu4_A          100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL  132 (320)
T ss_dssp             CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            445678999999999999999999999987654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.35  E-value=3.4e-07  Score=58.28  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      .++|+|+|||||||+++.|++ +....
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~   28 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYV   28 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEE
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEE
Confidence            689999999999999999999 55443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.31  E-value=2.2e-07  Score=71.47  Aligned_cols=29  Identities=28%  Similarity=0.321  Sum_probs=26.0

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +++.+++.++|+||||+||||++|++++.
T Consensus       668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          668 LSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             ECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            55678999999999999999999999864

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.31  E-value=3.3e-07  Score=69.58  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=24.7

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+++.++|+||||+||||++|+|+++.
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            568899999999999999999999963

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.30  E-value=6.7e-07  Score=58.40  Aligned_cols=40  Identities=18%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI   80 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~   80 (102)
                      .+..+++++|+|||||||+|.++.|+..++..  .++..++.
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll   64 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL   64 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence            45678899999999999999999999987654  34444444

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.30  E-value=5.6e-07  Score=57.81  Aligned_cols=32  Identities=25%  Similarity=0.279  Sum_probs=28.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+.+.++..++|.|++||||||+++.|++.+.
T Consensus        19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34467789999999999999999999999876

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=98.29  E-value=6.6e-07  Score=56.23  Aligned_cols=31  Identities=35%  Similarity=0.413  Sum_probs=26.9

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ...++..+.|.|++||||||+++.|+..+..
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~   39 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQK   39 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            3457889999999999999999999998754

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.28  E-value=6.2e-07  Score=56.09  Aligned_cols=26  Identities=27%  Similarity=0.417  Sum_probs=23.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +..++|.||+||||||+++.|+..+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999998765

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.27  E-value=1.3e-07  Score=61.48  Aligned_cols=28  Identities=39%  Similarity=0.615  Sum_probs=24.1

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++.+|+.++|.||||+|||||+..++..
T Consensus        19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           19 GIPERNVVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             SEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999997766543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=98.27  E-value=8.3e-07  Score=55.83  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=26.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      ++..++|.|++||||||+++.|+..++...+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i   38 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHL   38 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence            5678999999999999999999987765443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.27  E-value=3.5e-07  Score=63.77  Aligned_cols=39  Identities=21%  Similarity=0.204  Sum_probs=30.7

Q ss_pred             ChHHHHhcC---CCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         31 HPEYYEEMG---IKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        31 ~~~~~~~~~---i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+++..-+.   +++|+.+.|+||||+|||||+..++....+
T Consensus        46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~   87 (356)
T 3hr8_A           46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQK   87 (356)
T ss_dssp             CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            344444443   778999999999999999999999987643

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=98.27  E-value=6.6e-07  Score=60.71  Aligned_cols=29  Identities=28%  Similarity=0.208  Sum_probs=26.3

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +++.++++|++|+||||++..|++.+.+.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~  125 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            78899999999999999999999987654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=98.26  E-value=3.7e-07  Score=63.63  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=25.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++.+.++ +.+|+||||+||||++++|.++.
T Consensus        21 ~~~~~~g-~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           21 TLNFPEG-VTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence            4556677 89999999999999999999853

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=98.26  E-value=9.6e-07  Score=55.32  Aligned_cols=29  Identities=28%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +..++|.|++||||||+++.|+..++...
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~   31 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH   31 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            46799999999999999999998776543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=98.25  E-value=9.4e-07  Score=54.22  Aligned_cols=27  Identities=30%  Similarity=0.596  Sum_probs=22.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|.||+||||||+++.| ..++...+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i   29 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAKVI   29 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence            6889999999999999999 55555443

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.24  E-value=1.1e-06  Score=55.00  Aligned_cols=30  Identities=27%  Similarity=0.538  Sum_probs=25.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      ..++|.|++||||||+++.|+..++...+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id   32 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD   32 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence            468999999999999999999987765443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=98.24  E-value=3.7e-06  Score=63.07  Aligned_cols=62  Identities=26%  Similarity=0.395  Sum_probs=43.2

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcCC----CCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i----~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      ++.|.++.++.+.+.+....        .++    .+...++|+||+|+|||+++++++..+....+.++..+.
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~  524 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY  524 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             hccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence            45666777766666554321        122    123368999999999999999999998777777765544

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=98.24  E-value=7.9e-07  Score=55.13  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=20.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ..++|.|||||||||+++.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999997

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.23  E-value=8.9e-07  Score=55.86  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=22.3

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .++|+||||+|||||++.+++...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            6899999999999999999997643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.23  E-value=1.3e-06  Score=54.03  Aligned_cols=30  Identities=27%  Similarity=0.382  Sum_probs=26.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      ++++|.|++||||||+++.|+..+..+.+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id   37 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD   37 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence            589999999999999999999987766544

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=98.23  E-value=4.8e-07  Score=63.02  Aligned_cols=29  Identities=24%  Similarity=0.453  Sum_probs=24.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++.+.++ ..+|+|||||||||++.+|+..
T Consensus        18 ~i~~~~g-~~~i~G~NGaGKTTll~ai~~a   46 (365)
T 3qf7_A           18 DIEFQSG-ITVVEGPNGAGKSSLFEAISFA   46 (365)
T ss_dssp             EEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            3556666 7889999999999999999854

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=98.23  E-value=4.1e-06  Score=62.96  Aligned_cols=68  Identities=25%  Similarity=0.377  Sum_probs=46.1

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccchhh
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSELI   80 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~~~~   80 (102)
                      +++.|.+..++.+.+.+........   + .-.+...++|+||+|+|||+++++|+..+   ..+.+.++..++.
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~---~-~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~  561 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLK---D-PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM  561 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCS---C-TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccC---C-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence            4678888888888877754321100   0 00122269999999999999999999986   3456777766554

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=98.22  E-value=1.6e-06  Score=55.15  Aligned_cols=32  Identities=31%  Similarity=0.493  Sum_probs=26.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .+..++|.|++||||||+++.|+..+....+.
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~   50 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS   50 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence            35579999999999999999999877655443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=98.22  E-value=1.4e-06  Score=56.11  Aligned_cols=31  Identities=32%  Similarity=0.534  Sum_probs=26.2

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      ++..++|.|++||||||+++.|+..+....+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i   33 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHL   33 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence            4568999999999999999999998775443

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.22  E-value=6.6e-07  Score=61.51  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=24.9

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+..+.|+||||+|||++++.++..+
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            567899999999999999999999977

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.21  E-value=1.1e-06  Score=57.46  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=26.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ..+..++|.||+||||||+++.|+..+..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            47889999999999999999999998874

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.21  E-value=4.4e-07  Score=65.78  Aligned_cols=31  Identities=32%  Similarity=0.456  Sum_probs=28.7

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ++.+|+.++|.||||||||||++.+++...+
T Consensus       277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~  307 (525)
T 1tf7_A          277 GFFKDSIILATGATGTGKTLLVSRFVENACA  307 (525)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            6889999999999999999999999998755

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.21  E-value=2.6e-06  Score=55.44  Aligned_cols=30  Identities=20%  Similarity=0.421  Sum_probs=25.8

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +++....++++||||+||||++.+|+..+.
T Consensus        54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            355566799999999999999999999875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.21  E-value=1.6e-06  Score=56.59  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=26.6

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +..++..++|.|++||||||+++.|++.+...
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~   43 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFT   43 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence            34678899999999999999999999876644

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=98.21  E-value=1.7e-06  Score=54.14  Aligned_cols=30  Identities=27%  Similarity=0.451  Sum_probs=25.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      +..++|.|++||||||+++.|+..++...+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i   35 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL   35 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence            467999999999999999999987765443

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=98.20  E-value=1.1e-06  Score=54.85  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .+..++|.|++||||||+++.|+..+....+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            3567999999999999999999987765543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=98.20  E-value=1.3e-06  Score=55.08  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=26.1

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .+..++|.|++||||||+++.|+..++...+
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i   41 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHL   41 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence            3568999999999999999999998775443

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.20  E-value=7.8e-07  Score=67.30  Aligned_cols=29  Identities=21%  Similarity=0.331  Sum_probs=25.3

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.+. ++.++|+||||+||||++|+|+++.
T Consensus       572 isl~-g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          572 LEMA-HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             EEES-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ccCC-CcEEEEECCCCCChHHHHHHHHhhh
Confidence            3344 8999999999999999999999975

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.20  E-value=1.2e-06  Score=55.69  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=24.1

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +..++|.|++||||||+++.|+..++.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            568999999999999999999987665

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.20  E-value=6.5e-07  Score=68.99  Aligned_cols=27  Identities=19%  Similarity=0.194  Sum_probs=23.8

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      +++.+++.++|+||||+||||++|+++
T Consensus       657 l~~~~g~i~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          657 FEKDKQMFHIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             EETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred             eecCCCeEEEEECCCCCCHHHHHHHHH
Confidence            445678999999999999999999993

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.20  E-value=7e-07  Score=61.00  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=25.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++.+.++ ..+|+||||||||||+.+|..++
T Consensus        19 ~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           19 LIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             EEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            3455666 99999999999999999999665

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=98.20  E-value=2.4e-06  Score=58.05  Aligned_cols=57  Identities=18%  Similarity=0.276  Sum_probs=41.0

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC---ccEEEEccc
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS---ATFLRVVGS   77 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~---~~~~~i~~~   77 (102)
                      ++.|.+..+..+.+.+....           .....++|+||+|+|||+++++|+....   .++..+++.
T Consensus         3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~   62 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA   62 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred             CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence            56777777777777665421           3456899999999999999999998653   234555543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.20  E-value=1.3e-06  Score=61.60  Aligned_cols=27  Identities=19%  Similarity=0.236  Sum_probs=24.8

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+..+..++|+|+||+|||||+++|++
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence            356788999999999999999999999

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.19  E-value=1.6e-06  Score=53.59  Aligned_cols=29  Identities=21%  Similarity=0.447  Sum_probs=24.7

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      ..++|.|++||||||+++.|+..+....+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i   31 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYEFV   31 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            46899999999999999999987765543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.18  E-value=1.4e-06  Score=54.94  Aligned_cols=26  Identities=15%  Similarity=0.488  Sum_probs=23.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .++|.|++||||||+++.|+..+...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~   27 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYE   27 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCc
Confidence            57899999999999999999977654

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=98.18  E-value=1.6e-06  Score=55.52  Aligned_cols=28  Identities=25%  Similarity=0.521  Sum_probs=23.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|.||+||||||+++.|+..++...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i   29 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHI   29 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEe
Confidence            4789999999999999999887765544

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.18  E-value=5e-07  Score=64.10  Aligned_cols=30  Identities=27%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++++..+..++|+|+||+|||||+++|++.
T Consensus       151 ~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          151 RLELMLIADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             EEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             eeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            456778889999999999999999999997

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.18  E-value=1.8e-06  Score=56.91  Aligned_cols=29  Identities=31%  Similarity=0.532  Sum_probs=24.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +..++|.||+||||||+++.|+..+....
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~   37 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARY   37 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            45799999999999999999998776543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=98.17  E-value=1.7e-06  Score=55.47  Aligned_cols=28  Identities=21%  Similarity=0.491  Sum_probs=23.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|.||+||||||+++.|+..++...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i   29 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHI   29 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            4789999999999999999987765543

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.16  E-value=1.7e-06  Score=56.06  Aligned_cols=31  Identities=19%  Similarity=0.411  Sum_probs=25.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .+..++|.|++||||||+++.|+..+....+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i   36 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHL   36 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSEEE
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence            4568999999999999999999987765443

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.16  E-value=1.2e-06  Score=59.50  Aligned_cols=29  Identities=28%  Similarity=0.399  Sum_probs=26.2

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .++++++++||||+||||++..|++.+.+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999998765

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.16  E-value=2.7e-06  Score=53.79  Aligned_cols=26  Identities=15%  Similarity=0.172  Sum_probs=23.8

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+..++|.|++||||||+++.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=98.15  E-value=2.7e-06  Score=53.96  Aligned_cols=31  Identities=23%  Similarity=0.357  Sum_probs=25.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      ....++|.|++||||||+++.|+..++...+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i   44 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHL   44 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCceEE
Confidence            4567999999999999999999987765433

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=98.15  E-value=2.3e-06  Score=56.27  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=26.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++..++|.||+||||||+++.|+..++...+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i   58 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL   58 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence            35678999999999999999999987765433

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.15  E-value=1.9e-06  Score=61.25  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh-----CccEEEEccchh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT-----SATFLRVVGSEL   79 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~-----~~~~~~i~~~~~   79 (102)
                      ...++|+||+|+|||||+++|++.+     ......+...++
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            4689999999999999999999977     444555655443

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.14  E-value=4.7e-06  Score=58.10  Aligned_cols=32  Identities=31%  Similarity=0.589  Sum_probs=26.4

Q ss_pred             CCCCce--eEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         40 IKPPKG--VILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        40 i~~~~~--~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +.+++.  ++|+||+||||||++++|++.+...+
T Consensus        19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             hccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            445555  99999999999999999999876543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=98.14  E-value=2.2e-06  Score=55.41  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=26.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI   80 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~   80 (102)
                      .++|+|||||||+|.++.|+..++...  ++..++.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll   35 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL   35 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence            478899999999999999999887643  4444443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.14  E-value=2.6e-06  Score=54.71  Aligned_cols=28  Identities=32%  Similarity=0.343  Sum_probs=23.6

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +..++|.|++||||||+++.|+. +....
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~   31 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LGINV   31 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TTCEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cCCEE
Confidence            46799999999999999999998 55433

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.13  E-value=1.6e-06  Score=53.27  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=21.2

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ....+|+||||+||||++.+|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3478899999999999999998543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.13  E-value=2.7e-06  Score=52.32  Aligned_cols=28  Identities=18%  Similarity=0.300  Sum_probs=24.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|.|++||||||+++.|+..+....+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i   29 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFY   29 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            5789999999999999999997765544

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.13  E-value=1.9e-06  Score=60.90  Aligned_cols=26  Identities=31%  Similarity=0.447  Sum_probs=23.5

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ++.+|+.+.|+||||||||||++.++
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence            57899999999999999999999654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.13  E-value=2.5e-06  Score=54.06  Aligned_cols=28  Identities=32%  Similarity=0.526  Sum_probs=24.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|.|++||||||+++.|+..++...+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~   31 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYL   31 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence            7899999999999999999998775543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.12  E-value=1.8e-06  Score=55.75  Aligned_cols=29  Identities=21%  Similarity=0.411  Sum_probs=25.0

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .+..++|.||+||||||+++.|+..++..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~   32 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLA   32 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            35679999999999999999999887653

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.12  E-value=6.2e-06  Score=56.14  Aligned_cols=27  Identities=44%  Similarity=0.684  Sum_probs=23.9

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+..++|+||+|+|||+|+++|+..+.
T Consensus       151 ~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          151 EQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             SCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999998654

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=98.12  E-value=2.6e-06  Score=53.80  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ....++|.|++||||||+++.|+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3567999999999999999999987

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.12  E-value=1.6e-06  Score=54.82  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++|+||||+|||||++.+++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58899999999999999999974

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.11  E-value=1.5e-06  Score=54.34  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhC
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .++|.|++||||||+++.|+..++
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999998765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=98.11  E-value=6.1e-06  Score=62.87  Aligned_cols=66  Identities=24%  Similarity=0.390  Sum_probs=45.5

Q ss_pred             ccccCChHHHHHHHHHHhhhhcCChHHHHhcC--CCCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccchh
Q psy16321          8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGSEL   79 (102)
Q Consensus         8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~~~   79 (102)
                      ++++.|.+..++.+...+.....      .+.  -.+...++|+||+|+|||+++++|+..+   ..+++.++...+
T Consensus       557 ~~~viG~~~a~~~l~~~i~~~~~------g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~  627 (854)
T 1qvr_A          557 HKRVVGQDEAIRAVADAIRRARA------GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY  627 (854)
T ss_dssp             HHHSCSCHHHHHHHHHHHHHHGG------GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             hcccCCcHHHHHHHHHHHHHHhc------ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhc
Confidence            35678888888888777654211      011  0122478999999999999999999987   445666765543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.10  E-value=2.6e-06  Score=60.65  Aligned_cols=30  Identities=30%  Similarity=0.236  Sum_probs=26.5

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .++++++++||+|+||||++..|++.+.+.
T Consensus        96 ~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~  125 (425)
T 2ffh_A           96 KDRNLWFLVGLQGSGKTTTAAKLALYYKGK  125 (425)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            367899999999999999999999987654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.09  E-value=2e-06  Score=54.77  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=24.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..+..++|.|++||||||+++.|+..+.
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999998653

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.09  E-value=2.3e-06  Score=54.52  Aligned_cols=28  Identities=14%  Similarity=0.237  Sum_probs=24.5

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..+..++|.|++||||||+++.|+..++
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4577899999999999999999998653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.08  E-value=4.4e-06  Score=54.41  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=26.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .+..++|.|++||||||+++.|+..+....+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~   46 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA   46 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            45679999999999999999999987755433

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.08  E-value=7.8e-07  Score=56.75  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .++|.|++||||||+++.|+..+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            5789999999999999999988754

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.07  E-value=2.6e-06  Score=54.41  Aligned_cols=25  Identities=32%  Similarity=0.626  Sum_probs=21.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+.|+||||+|||||++.|....+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCC
Confidence            4588999999999999999886543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.07  E-value=1.5e-06  Score=60.19  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=24.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+..++|+|+||+|||||++.|++.+.+
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~  100 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTE  100 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence            4678999999999999999999997543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=98.06  E-value=5.3e-06  Score=55.01  Aligned_cols=25  Identities=36%  Similarity=0.503  Sum_probs=22.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .+..++|.|+|||||||+++.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3567999999999999999999986

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=98.05  E-value=3.5e-06  Score=54.29  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=25.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      +..++|.|++||||||+++.|+..+....+.
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~   35 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLS   35 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence            4578999999999999999999987655443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.04  E-value=5.2e-06  Score=51.92  Aligned_cols=23  Identities=30%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999876

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.03  E-value=1.5e-06  Score=59.02  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=19.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhh-hCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ-TSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~-~~~~~~   72 (102)
                      .++|+||||+|||||++.|++. ..+..+
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g   48 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLTDLYPERV   48 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC--------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence            3599999999999999999986 544433

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=98.03  E-value=3.5e-06  Score=61.03  Aligned_cols=29  Identities=31%  Similarity=0.539  Sum_probs=25.1

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ..+..++|+||||+|||+++++|+.....
T Consensus        39 ~~~~~VLL~GpPGtGKT~LAraLa~~l~~   67 (500)
T 3nbx_X           39 LSGESVFLLGPPGIAKSLIARRLKFAFQN   67 (500)
T ss_dssp             HHTCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred             hcCCeeEeecCchHHHHHHHHHHHHHHhh
Confidence            34679999999999999999999997743

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.02  E-value=4.3e-06  Score=53.66  Aligned_cols=29  Identities=24%  Similarity=0.368  Sum_probs=24.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .++|.|++||||||+++.|+..++...+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~   30 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS   30 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            47899999999999999999877654443

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=98.01  E-value=5.5e-06  Score=53.67  Aligned_cols=26  Identities=27%  Similarity=0.615  Sum_probs=22.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .++|.||+||||||+++.|+..+...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~   27 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLA   27 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence            47899999999999999999877643

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.00  E-value=5.2e-07  Score=68.83  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=27.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHH-HHhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKA-VANQT   67 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~-i~~~~   67 (102)
                      ++.++.|+.++|+|+||||||||++. |++.+
T Consensus       517 sl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          517 DVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             EEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             eEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            45688999999999999999999996 77654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.00  E-value=6.1e-06  Score=52.78  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      ...++|+|++||||||+++.++..+....+.
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid   42 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVN   42 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence            4578999999999999999999876655443

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.00  E-value=6.4e-06  Score=57.42  Aligned_cols=24  Identities=25%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhC
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .++|+|+||+|||||++++++...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            489999999999999999998643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.98  E-value=3.4e-06  Score=57.29  Aligned_cols=27  Identities=37%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ++.++++|++|+||||++..|++.+..
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~  124 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKK  124 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            788999999999999999999988754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.98  E-value=6.5e-06  Score=56.71  Aligned_cols=31  Identities=35%  Similarity=0.566  Sum_probs=26.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      ..++|+||+||||||+++.|+..++...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~   36 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALPCELISV   36 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence            4789999999999999999999887655554

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.97  E-value=3.2e-06  Score=60.03  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             eEEECCCCCChhHHHHHHHhhhC
Q psy16321         46 VILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++|+||||+|||||+++|+|...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            69999999999999999999765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.97  E-value=2.5e-06  Score=58.82  Aligned_cols=31  Identities=19%  Similarity=0.156  Sum_probs=27.2

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +....+..++++|+||+||||+++.|++.+.
T Consensus        51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           51 PYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             GGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4467788999999999999999999998764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.97  E-value=5.3e-06  Score=52.34  Aligned_cols=26  Identities=27%  Similarity=0.175  Sum_probs=22.7

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      -..++|.||+|||||||++.|.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            35789999999999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.96  E-value=4.1e-06  Score=51.94  Aligned_cols=26  Identities=31%  Similarity=0.480  Sum_probs=22.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++..++|+|++|+|||||++.+++..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            46679999999999999999999853

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.96  E-value=6.3e-06  Score=54.27  Aligned_cols=29  Identities=14%  Similarity=0.202  Sum_probs=24.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ....++|.|++||||||+++.|+..+...
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~   49 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQN   49 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence            34579999999999999999999876643

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.94  E-value=6.5e-06  Score=52.87  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=21.2

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ....+|+||||+||||++.+|.-.+
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l   47 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999997543

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=97.93  E-value=5.8e-06  Score=56.86  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.0

Q ss_pred             CceeEEECCCCCChhHHHHHHHh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      +...+|+||||+||||++.+|..
T Consensus        23 ~~~~~i~G~NGsGKS~lleAi~~   45 (339)
T 3qkt_A           23 EGINLIIGQNGSGKSSLLDAILV   45 (339)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999854

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.91  E-value=6e-06  Score=50.65  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..++|+|++|+|||||++.+++.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999999984

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.89  E-value=3.8e-05  Score=51.91  Aligned_cols=54  Identities=17%  Similarity=0.158  Sum_probs=39.2

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      .-+.+.|-+..++.|.+ +..                ..++|+||+|+|||||++.++.........++..
T Consensus        11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~   64 (357)
T 2fna_A           11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   64 (357)
T ss_dssp             SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence            44567777777776665 421                4899999999999999999998765554455443

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.88  E-value=1.1e-05  Score=55.92  Aligned_cols=32  Identities=28%  Similarity=0.413  Sum_probs=26.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .+..++|+||+|||||||+..||..++...+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs   70 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVIN   70 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence            34689999999999999999999987754443

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.88  E-value=1.4e-05  Score=51.17  Aligned_cols=30  Identities=33%  Similarity=0.561  Sum_probs=25.1

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      +..++|.|++||||||+++.|+..++...+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~   32 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYV   32 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence            357899999999999999999997765443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.88  E-value=8.8e-06  Score=57.50  Aligned_cols=28  Identities=25%  Similarity=0.390  Sum_probs=24.0

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+..++|+|+|||||||+++.|+..+..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~~~  284 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY  284 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGGTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            4678899999999999999999876643

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.86  E-value=6.4e-06  Score=57.14  Aligned_cols=29  Identities=28%  Similarity=0.527  Sum_probs=25.4

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++++|+.+.|+||||+|||||+..++...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998888654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.86  E-value=1.3e-05  Score=53.82  Aligned_cols=27  Identities=30%  Similarity=0.289  Sum_probs=22.6

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ...++|.|++||||||+++.|+. +...
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~-lg~~  101 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN-LGAY  101 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH-HTCE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-CCCc
Confidence            45799999999999999999994 4443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.86  E-value=6.3e-06  Score=58.80  Aligned_cols=28  Identities=32%  Similarity=0.326  Sum_probs=24.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ++..++++||+|+||||++..|+..+..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~  123 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK  123 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999987644

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.86  E-value=6.8e-06  Score=55.58  Aligned_cols=26  Identities=12%  Similarity=0.198  Sum_probs=20.0

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +..++|.||+||||||+++.|+..++
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999998654

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.86  E-value=1.7e-06  Score=66.84  Aligned_cols=28  Identities=29%  Similarity=0.335  Sum_probs=24.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ++.++.|+.++|+|+||||||||++.|.
T Consensus       644 sl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          644 SVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             eEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            4567899999999999999999999853

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=97.86  E-value=3.5e-06  Score=62.11  Aligned_cols=27  Identities=19%  Similarity=0.439  Sum_probs=23.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ..++|+||||+|||+|+++++...+..
T Consensus       328 ~~vLL~GppGtGKT~LAr~la~~~~r~  354 (595)
T 3f9v_A          328 IHILIIGDPGTAKSQMLQFISRVAPRA  354 (595)
T ss_dssp             CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred             cceEEECCCchHHHHHHHHHHHhCCCc
Confidence            379999999999999999999987543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.85  E-value=7.2e-06  Score=51.15  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=20.3

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999984

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.85  E-value=1.6e-05  Score=54.82  Aligned_cols=37  Identities=24%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             CChHHHHhc--CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         30 THPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        30 ~~~~~~~~~--~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..+.+..-+  ++++|+.+.|+||||+|||||+..++..
T Consensus       107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            334444444  5889999999999999999999999885

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.85  E-value=9.5e-06  Score=54.40  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..++|.|+|||||||+++.|+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999974

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.84  E-value=1.3e-05  Score=55.56  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=24.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      ..++|.||+||||||+++.|+..++...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~~~i   35 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFNGEI   35 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTEEE
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcCCce
Confidence            4789999999999999999999877443

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.83  E-value=1e-05  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|++|+|||||++.+++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999984

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.83  E-value=1.4e-05  Score=53.78  Aligned_cols=27  Identities=37%  Similarity=0.596  Sum_probs=23.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++..+++|+||||+|||+++++|+...
T Consensus       102 ~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          102 GKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            335579999999999999999999864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.81  E-value=2.3e-05  Score=55.46  Aligned_cols=32  Identities=25%  Similarity=0.380  Sum_probs=28.4

Q ss_pred             HhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         36 EEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        36 ~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+.+.+|+.++|+||+|+|||||++.|++..
T Consensus       167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             HHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             eeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            34567889999999999999999999999865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.80  E-value=1.5e-05  Score=50.15  Aligned_cols=25  Identities=20%  Similarity=0.114  Sum_probs=22.1

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..++|.|++||||||++..|+..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4789999999999999999998753

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.80  E-value=9.8e-06  Score=54.94  Aligned_cols=24  Identities=25%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ...++|+|+||+|||||+++|.+.
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999985

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.78  E-value=2.2e-05  Score=54.01  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=24.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      +..++|.||+|||||||+..|+..++...+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~ii   32 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVI   32 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEE
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCcccee
Confidence            357889999999999999999987764433

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.77  E-value=2.4e-05  Score=53.73  Aligned_cols=32  Identities=34%  Similarity=0.606  Sum_probs=26.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      +..++|+||+|||||||+..|+..++...++.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~   41 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILPVELISV   41 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence            46789999999999999999998876544443

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.77  E-value=4.5e-05  Score=47.50  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=22.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..-.++++|++|+|||||++.+.+..
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34579999999999999999999854

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.76  E-value=6.9e-06  Score=61.22  Aligned_cols=32  Identities=38%  Similarity=0.427  Sum_probs=26.7

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +.+..++.++|+|++|+|||||++.|++...+
T Consensus         4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~   35 (665)
T 2dy1_A            4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGA   35 (665)
T ss_dssp             --CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CccCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence            45677889999999999999999999976653

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.76  E-value=9.1e-06  Score=62.59  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=21.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHH
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      ++.++.|+.++|+||||||||||+
T Consensus       604 sl~I~~Geiv~I~G~SGSGKSTLl  627 (916)
T 3pih_A          604 DVEIPLGVFVCVTGVSGSGKSSLV  627 (916)
T ss_dssp             EEEEESSSEEEEECSTTSSHHHHH
T ss_pred             ceEEcCCcEEEEEccCCCChhhhH
Confidence            356788999999999999999997

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.75  E-value=4.7e-05  Score=52.67  Aligned_cols=53  Identities=23%  Similarity=0.213  Sum_probs=38.1

Q ss_pred             cccCChHHHHHHHHHHh-hhhcCChHHHHhcCCCCCceeEE--ECCCCCChhHHHHHHHhhhC
Q psy16321          9 KKRGSLDVQIQEIKESV-ELPLTHPEYYEEMGIKPPKGVIL--YGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~-~~~~~~~~~~~~~~i~~~~~~~l--~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+.|-++.++.|.+.+ ......      .. ..+..++|  +||+|+|||||++.++....
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~------~~-~~~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSG------AG-LSDVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTS------SC-BCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcC------CC-CCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            56888888888888776 422111      00 23567888  99999999999999998653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.75  E-value=3.3e-05  Score=54.56  Aligned_cols=27  Identities=19%  Similarity=0.332  Sum_probs=23.6

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +..+..++|+|+||+|||||+++|.+.
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            456778999999999999999999986

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.74  E-value=7.7e-05  Score=50.30  Aligned_cols=47  Identities=21%  Similarity=0.198  Sum_probs=37.2

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .-+.+.|-+..++.|.+.+..               +..++|+||+|+|||||++.++...+
T Consensus        10 ~~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           10 RREDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             SGGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             ChHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC
Confidence            446678888888888776531               26899999999999999999987654

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.73  E-value=2.1e-05  Score=50.89  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+..++|.||+|+|||||+..|+....
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            367899999999999999999987543

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.73  E-value=4.1e-05  Score=52.29  Aligned_cols=38  Identities=21%  Similarity=0.302  Sum_probs=29.7

Q ss_pred             CChHHHHhc--CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         30 THPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        30 ~~~~~~~~~--~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+.+..-+  ++++|+.+.|+||||+|||+|+..++...
T Consensus        92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A           92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            334444434  57889999999999999999999998753

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.72  E-value=2.7e-05  Score=51.25  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=24.7

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      -.++|.|||||||||+++.|+..+....+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i   37 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFGIPQI   37 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence            36899999999999999999988775543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.68  E-value=3e-05  Score=55.28  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=26.7

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++.+|+.++|.|+||+|||||+..++...
T Consensus       199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~  227 (454)
T 2r6a_A          199 GFQRSDLIIVAARPSVGKTAFALNIAQNV  227 (454)
T ss_dssp             SBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999999998865

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.68  E-value=2.5e-05  Score=50.83  Aligned_cols=24  Identities=21%  Similarity=0.479  Sum_probs=21.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      -.++|+|++|+|||||+++|.+..
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~   53 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRK   53 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCC
Confidence            468999999999999999999854

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.67  E-value=2e-05  Score=52.34  Aligned_cols=24  Identities=38%  Similarity=0.515  Sum_probs=21.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..++|+|++|+|||||++++.+..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999863

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.67  E-value=2.4e-05  Score=49.64  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+..++|.|+||+||||++..+..
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999999988876

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.66  E-value=1.3e-05  Score=55.31  Aligned_cols=28  Identities=29%  Similarity=0.286  Sum_probs=24.0

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++.++..++|.||||+|||+|+..++..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            3556778899999999999999999864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.66  E-value=3.5e-05  Score=54.57  Aligned_cols=30  Identities=23%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      ...++|.||+|+|||||+..|+..++...+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~ii   31 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVI   31 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEE
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEe
Confidence            357889999999999999999988765443

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.65  E-value=3.1e-05  Score=46.88  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999874

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.64  E-value=2.6e-05  Score=50.42  Aligned_cols=26  Identities=38%  Similarity=0.520  Sum_probs=23.1

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ++++|+.+.|.|+||+|||+|+..++
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            47899999999999999999987654

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.64  E-value=5.3e-05  Score=56.30  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh---CccEEEEcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVG   76 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~   76 (102)
                      .+..+.|.|++||||||+++.|+..+   ....+.++.
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg   88 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   88 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence            56789999999999999999999987   555555543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.64  E-value=3.6e-05  Score=46.31  Aligned_cols=22  Identities=27%  Similarity=0.528  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=97.63  E-value=4.1e-05  Score=49.64  Aligned_cols=27  Identities=30%  Similarity=0.322  Sum_probs=24.1

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .|..+.|.|++||||||+++.|+..+.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            477899999999999999999988764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.62  E-value=5.3e-05  Score=54.21  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++..++++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999997653

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=97.62  E-value=3.8e-05  Score=50.37  Aligned_cols=28  Identities=21%  Similarity=0.197  Sum_probs=21.7

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..|..+.|.||+||||||+++.|+..+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678899999999999999999998764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.62  E-value=4e-05  Score=52.21  Aligned_cols=28  Identities=32%  Similarity=0.383  Sum_probs=25.3

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++.+|+.++|.|+||+|||||+..++..
T Consensus        64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~   91 (315)
T 3bh0_A           64 GYKRRNFVLIAARPSMGKTAFALKQAKN   91 (315)
T ss_dssp             SBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            5899999999999999999999888753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.62  E-value=3.7e-05  Score=46.33  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.8

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999998864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.62  E-value=3.5e-05  Score=52.40  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=28.3

Q ss_pred             ChHHHHhc--CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         31 HPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        31 ~~~~~~~~--~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .+.+..-+  ++++++.+.|+||||+|||+|+..++..
T Consensus        84 ~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           84 SSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             CHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            33443334  4788999999999999999999988864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.61  E-value=3.4e-05  Score=47.09  Aligned_cols=22  Identities=50%  Similarity=0.750  Sum_probs=20.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            5899999999999999999874

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.60  E-value=5.3e-05  Score=46.39  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=21.8

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ....++++|++|+|||||++.+.+.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4557899999999999999999873

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.60  E-value=0.00015  Score=50.16  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=30.0

Q ss_pred             CChHHHHhc-CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         30 THPEYYEEM-GIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        30 ~~~~~~~~~-~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+.+..-+ ++.+|+.++|.|+||+|||||+..++...
T Consensus        32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~   70 (338)
T 4a1f_A           32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA   70 (338)
T ss_dssp             SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            444444433 58999999999999999999998888753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.59  E-value=4.1e-05  Score=46.16  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.59  E-value=4.2e-05  Score=46.34  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++++|++|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58899999999999999998753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.59  E-value=4e-05  Score=46.44  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999873

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.59  E-value=3.8e-05  Score=46.18  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999874

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.58  E-value=4.3e-05  Score=46.23  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999999864

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.58  E-value=4.4e-05  Score=49.77  Aligned_cols=26  Identities=19%  Similarity=0.371  Sum_probs=23.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +..++|.|+.||||||+++.|+..+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            56789999999999999999998774

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.58  E-value=8.7e-06  Score=58.90  Aligned_cols=29  Identities=17%  Similarity=0.281  Sum_probs=24.2

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.+.++ ..+|+|+||+|||||+.+|..++
T Consensus        56 l~f~~g-~n~i~G~NGaGKS~lleAl~~ll   84 (517)
T 4ad8_A           56 LELGGG-FCAFTGETGAGKSIIVDALGLLL   84 (517)
T ss_dssp             EECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             EecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence            445555 88999999999999999997764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.58  E-value=4.4e-05  Score=46.70  Aligned_cols=22  Identities=36%  Similarity=0.517  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.58  E-value=3.5e-05  Score=54.65  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=21.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      -.++|+|+||+|||||++.|.+..
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            478999999999999999999875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.58  E-value=4.5e-05  Score=46.29  Aligned_cols=22  Identities=32%  Similarity=0.373  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.57  E-value=4.9e-05  Score=46.56  Aligned_cols=23  Identities=39%  Similarity=0.538  Sum_probs=20.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999998874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=97.57  E-value=4.7e-05  Score=50.16  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=24.1

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+..+.|.|++||||||+++.|+..+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            477899999999999999999988764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.57  E-value=3.8e-05  Score=53.35  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=20.0

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ...+|+||||+||||++.+|.=
T Consensus        26 gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999999984

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.56  E-value=4.1e-05  Score=46.49  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=19.1

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999999975

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.56  E-value=6.1e-05  Score=52.40  Aligned_cols=28  Identities=32%  Similarity=0.469  Sum_probs=25.1

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +++++.+.|.||||+|||||+..++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7789999999999999999998888643

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.56  E-value=4.1e-05  Score=46.40  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5889999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.55  E-value=5e-05  Score=45.87  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999999874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.55  E-value=2.6e-05  Score=51.58  Aligned_cols=28  Identities=14%  Similarity=0.200  Sum_probs=24.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..+..++|.|+.||||||+++.|+..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4567899999999999999999998773

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.55  E-value=6.2e-05  Score=48.98  Aligned_cols=28  Identities=21%  Similarity=0.221  Sum_probs=25.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .|..+.+.|++||||||+++.|+..+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            5788999999999999999999998875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.54  E-value=5.3e-05  Score=48.16  Aligned_cols=25  Identities=28%  Similarity=0.539  Sum_probs=21.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .-.++++|++|+|||||++.+.+..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999999854

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.54  E-value=5.4e-05  Score=47.03  Aligned_cols=23  Identities=17%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999999885

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.54  E-value=3e-05  Score=47.00  Aligned_cols=22  Identities=41%  Similarity=0.729  Sum_probs=19.8

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCc
Confidence            5789999999999999999864

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.54  E-value=3.2e-05  Score=53.91  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=23.1

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+..++++||+|+||||+++.++...
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~   59 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLRE   59 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999998865

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.54  E-value=5.5e-05  Score=45.75  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=19.5

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            588999999999999999986

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.53  E-value=5.5e-05  Score=46.74  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|++|+|||||++.+.+.
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999873

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.52  E-value=5.8e-05  Score=46.56  Aligned_cols=22  Identities=23%  Similarity=0.487  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999874

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.52  E-value=6.4e-05  Score=46.63  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhC
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .++++|++|+|||||++.+.+...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            589999999999999999988543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.52  E-value=4e-05  Score=46.91  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.52  E-value=7.7e-05  Score=47.80  Aligned_cols=29  Identities=21%  Similarity=0.233  Sum_probs=25.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++.|.||.||||||+++.|+..+..+++
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~   35 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY   35 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence            47999999999999999999998877654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.52  E-value=6e-05  Score=46.14  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5889999999999999999864

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=97.52  E-value=7.5e-05  Score=54.92  Aligned_cols=27  Identities=22%  Similarity=0.260  Sum_probs=24.0

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+..+.|.|++||||||+++.|+..+.
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            456789999999999999999998765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.51  E-value=6e-05  Score=46.99  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|++|+|||||++.+.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999999874

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.51  E-value=5.3e-05  Score=50.75  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|+||+|||||++.+.+.
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC
Confidence            36899999999999999999985

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=97.51  E-value=6.7e-05  Score=48.67  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .|..+.|.|++||||||+++.|+..+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.51  E-value=8.4e-05  Score=45.11  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=21.3

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +.-.++++|++|+|||||++.+.+-
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999763

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.51  E-value=5.3e-05  Score=46.36  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999875

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.51  E-value=7.3e-05  Score=48.59  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ..++.+++.||+||||||++..+.-
T Consensus        74 ~~g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           74 SQNSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence            4588999999999999998776653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.51  E-value=6.9e-05  Score=47.11  Aligned_cols=26  Identities=15%  Similarity=0.316  Sum_probs=21.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ...-.++++|++|+|||||++.+.+.
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence            34457999999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=97.50  E-value=8.1e-05  Score=48.68  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=25.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ..+..+.|.|++||||||+++.|+..+..
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45788999999999999999999987654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.50  E-value=8.4e-05  Score=51.32  Aligned_cols=26  Identities=31%  Similarity=0.475  Sum_probs=22.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..-.++++|+||+|||||++.+++..
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~  191 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK  191 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            44579999999999999999999853

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.50  E-value=8.5e-05  Score=56.30  Aligned_cols=62  Identities=16%  Similarity=0.165  Sum_probs=40.8

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChH-HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPE-YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~-~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+|++++-.....+.+++.-.+|..... .+.. .+..++.+++.||+||||||++..+....
T Consensus        71 ~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~-~l~~~~~vii~gpTGSGKTtllp~ll~~~  133 (773)
T 2xau_A           71 INPFTGREFTPKYVDILKIRRELPVHAQRDEFLK-LYQNNQIMVFVGETGSGKTTQIPQFVLFD  133 (773)
T ss_dssp             BCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHH-HHHHCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCccccCCCHHHHHHHHHhhcCChHHHHHHHHH-HHhCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            45688887666666666665555532221 1111 23457889999999999999888886543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.49  E-value=6.8e-05  Score=45.30  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.49  E-value=7.2e-05  Score=46.43  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=20.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6899999999999999999874

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.48  E-value=6.9e-05  Score=46.06  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            46899999999999999999874

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.48  E-value=0.00018  Score=48.96  Aligned_cols=33  Identities=6%  Similarity=0.082  Sum_probs=26.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh------CccEEEEcc
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT------SATFLRVVG   76 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~------~~~~~~i~~   76 (102)
                      ..++|+||+|+||||++++++..+      .++...++.
T Consensus        19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~   57 (305)
T 2gno_A           19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP   57 (305)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcC
Confidence            478999999999999999998753      445666654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.48  E-value=7.2e-05  Score=45.67  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.48  E-value=8.6e-05  Score=46.19  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..-.++++|++|+|||||++.+.+.
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.47  E-value=7.5e-05  Score=45.82  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.47  E-value=5.5e-05  Score=46.88  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=21.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      -.++++|++|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            468999999999999999998753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.47  E-value=6.2e-05  Score=45.96  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35899999999999999999863

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.46  E-value=6.6e-05  Score=47.04  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      -.++++|++|+|||||++.+.+
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999999987

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.46  E-value=5.2e-05  Score=46.91  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            4789999999999999999874

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.46  E-value=7e-05  Score=54.43  Aligned_cols=29  Identities=14%  Similarity=0.070  Sum_probs=25.6

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ..+..+.|.|.+||||||++++|+..+..
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            35668999999999999999999998874

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.46  E-value=8.4e-05  Score=45.54  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=20.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999999874

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.45  E-value=4.5e-05  Score=47.41  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=21.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++++|++|+|||||++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            446899999999999999999875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.44  E-value=8.6e-05  Score=51.26  Aligned_cols=22  Identities=14%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||+++|.|.
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            8999999999999999999994

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.44  E-value=8.5e-05  Score=46.20  Aligned_cols=22  Identities=32%  Similarity=0.534  Sum_probs=20.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.44  E-value=8.6e-05  Score=46.18  Aligned_cols=22  Identities=27%  Similarity=0.377  Sum_probs=20.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999874

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.44  E-value=9e-05  Score=52.78  Aligned_cols=26  Identities=31%  Similarity=0.408  Sum_probs=23.1

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +..++++|++|+||||++..|++.+.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.43  E-value=7.2e-05  Score=46.14  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.43  E-value=0.0002  Score=52.58  Aligned_cols=26  Identities=46%  Similarity=0.636  Sum_probs=22.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ...++|.|||||||||+++.++..+.
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~  229 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAE  229 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999988653

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.43  E-value=9e-05  Score=46.53  Aligned_cols=23  Identities=39%  Similarity=0.556  Sum_probs=20.7

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.43  E-value=0.00011  Score=46.01  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +.-.++++|++|+|||||++.+.+.
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.43  E-value=9e-05  Score=46.23  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+-
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999877653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.43  E-value=8.9e-05  Score=46.45  Aligned_cols=23  Identities=30%  Similarity=0.463  Sum_probs=20.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|++|+|||||++.+.+.
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=97.42  E-value=0.0001  Score=53.52  Aligned_cols=26  Identities=27%  Similarity=0.560  Sum_probs=22.9

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+..++++|.|||||||+++.|+..+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999876

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.42  E-value=0.0001  Score=46.59  Aligned_cols=22  Identities=27%  Similarity=0.255  Sum_probs=18.4

Q ss_pred             CceeEEECCCCCChhHHHHHHH
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      +..++++||+|+||||++..++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~   24 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFV   24 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            6788999999999999984444

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.42  E-value=9.9e-05  Score=45.47  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.42  E-value=7.7e-05  Score=46.26  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999999874

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.41  E-value=7.8e-05  Score=49.41  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=20.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.|.
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999986

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.41  E-value=4.3e-05  Score=48.24  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      -.++++|++|+|||||++.+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999999986

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.41  E-value=6.6e-05  Score=50.97  Aligned_cols=25  Identities=24%  Similarity=0.336  Sum_probs=22.3

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +...++|+|++|+|||||++.+.+.
T Consensus         9 ~~g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A            9 KVGYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCC
Confidence            4557999999999999999999985

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.41  E-value=9.9e-05  Score=45.38  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=19.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999863

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.40  E-value=8.3e-05  Score=51.02  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=22.1

Q ss_pred             CCceeEEECCCCCChhHHHHHHHh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .|..++|.|+||+||||++..+.+
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            478999999999999999999887

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.40  E-value=0.0001  Score=45.78  Aligned_cols=23  Identities=26%  Similarity=0.327  Sum_probs=20.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999863

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.40  E-value=8.7e-05  Score=46.39  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999999874

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.39  E-value=0.00011  Score=52.18  Aligned_cols=29  Identities=28%  Similarity=0.384  Sum_probs=25.9

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++.+|+.+.|.|+||+|||||+..++...
T Consensus       196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          196 TLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             CCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999998888743

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.39  E-value=9.8e-05  Score=46.34  Aligned_cols=23  Identities=22%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|++|+|||||++.+.+.
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.38  E-value=0.00011  Score=45.58  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999874

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.38  E-value=9.5e-05  Score=45.73  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=21.8

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +.-.++++|++|+|||||++.+.+.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4457899999999999999999864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.38  E-value=9.6e-05  Score=47.11  Aligned_cols=25  Identities=32%  Similarity=0.476  Sum_probs=22.0

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...++++|++|+|||||+..+++..
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.38  E-value=0.00011  Score=48.76  Aligned_cols=22  Identities=41%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999984

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.38  E-value=9.5e-05  Score=46.08  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=20.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            46899999999999999999873

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.37  E-value=0.00011  Score=45.74  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.37  E-value=0.00015  Score=44.44  Aligned_cols=24  Identities=21%  Similarity=0.171  Sum_probs=20.9

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++++|++|+|||||++.+.+-
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999864

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.37  E-value=0.00012  Score=45.66  Aligned_cols=24  Identities=25%  Similarity=0.313  Sum_probs=20.9

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++++|++|+|||||++.+.+.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.37  E-value=8.2e-05  Score=45.78  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.0

Q ss_pred             CCceeEEECCCCCChhHHHHHHHh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ..-.++++|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            455799999999999999999874

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.36  E-value=9.8e-05  Score=46.05  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++|+|++|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            58999999999999999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.36  E-value=0.00012  Score=46.21  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..-.++++|++|+|||||++.+.+.
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3457899999999999999999864

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.36  E-value=9.8e-05  Score=46.48  Aligned_cols=26  Identities=27%  Similarity=0.316  Sum_probs=22.1

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..-.++|+|++|+|||||++.+.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34568999999999999999998743

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.35  E-value=0.00012  Score=45.63  Aligned_cols=23  Identities=26%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=97.35  E-value=0.00013  Score=45.93  Aligned_cols=22  Identities=41%  Similarity=0.593  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999863

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.34  E-value=0.00013  Score=45.47  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            35899999999999999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.34  E-value=0.00012  Score=45.08  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.7

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      -.++++|++|+|||||++.+.+
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3689999999999999999985

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=97.34  E-value=0.00011  Score=46.33  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.34  E-value=0.00012  Score=45.96  Aligned_cols=25  Identities=20%  Similarity=0.279  Sum_probs=21.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+.-.++++|++|+|||||++.+.+
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHh
Confidence            3455799999999999999999975

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.34  E-value=6.9e-05  Score=47.25  Aligned_cols=23  Identities=35%  Similarity=0.476  Sum_probs=20.1

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|++|+|||||++.+.+.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999753

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.33  E-value=8.5e-05  Score=51.60  Aligned_cols=22  Identities=23%  Similarity=0.415  Sum_probs=19.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.|.+.
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4699999999999999998764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.32  E-value=0.00011  Score=48.15  Aligned_cols=24  Identities=29%  Similarity=0.509  Sum_probs=21.4

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++|+|++|+|||||++.|.+.
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999999874

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=97.32  E-value=0.00017  Score=46.43  Aligned_cols=26  Identities=27%  Similarity=0.422  Sum_probs=23.0

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++.+.|-|+-||||||+++.|+..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            46789999999999999999998764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.32  E-value=0.00012  Score=46.53  Aligned_cols=23  Identities=30%  Similarity=0.509  Sum_probs=20.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|++|+|||||++.+.+.
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            36899999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.31  E-value=0.00012  Score=48.88  Aligned_cols=23  Identities=30%  Similarity=0.439  Sum_probs=20.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|++|+|||||++++.+.
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~   26 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGS   26 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999985

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.31  E-value=0.00013  Score=50.96  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++|+|+||+|||||+++|.+..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999863

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.31  E-value=9.7e-05  Score=45.30  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.31  E-value=0.00012  Score=47.13  Aligned_cols=24  Identities=33%  Similarity=0.566  Sum_probs=21.2

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++|+|++|+|||||++.+.+.
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=97.30  E-value=0.00014  Score=46.22  Aligned_cols=22  Identities=23%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999999864

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.30  E-value=0.00033  Score=50.23  Aligned_cols=52  Identities=21%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         14 LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        14 ~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +...+..+.+.+............+  ..+-.++|+|++|+|||||++.+.+..
T Consensus       197 ~~~~i~~l~~~l~~~~~~~~~~~~~--r~~~kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          197 IISDIENIAAEISQLLATKDKGELL--RTGLKVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             HHHHHHHHHHHHHHHTTTHHHHHHH--HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhh--cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            3444455554444433333322221  234469999999999999999999853

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.30  E-value=0.00014  Score=49.30  Aligned_cols=23  Identities=26%  Similarity=0.361  Sum_probs=20.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..++|+|.+|+|||||++.+.+.
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999984

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.30  E-value=0.00013  Score=46.48  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.30  E-value=0.00019  Score=52.07  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=21.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +...++|+|++|+||||++..|+..+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l  125 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYY  125 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999543

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.30  E-value=0.0001  Score=51.42  Aligned_cols=28  Identities=43%  Similarity=0.595  Sum_probs=24.6

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +++++..+.|.||+|+|||||+..++..
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~   97 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQ   97 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence            3678999999999999999999887764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.29  E-value=0.00013  Score=45.22  Aligned_cols=25  Identities=24%  Similarity=0.302  Sum_probs=21.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..-.++++|++|+|||||++.+.+-
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999999853

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.29  E-value=0.00017  Score=45.72  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999874

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.29  E-value=0.00021  Score=48.91  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=22.7

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +..++|+||+|+|||+++++++..+.
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHh
Confidence            34689999999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.29  E-value=0.00018  Score=51.47  Aligned_cols=27  Identities=26%  Similarity=0.493  Sum_probs=23.1

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ....++++|.+||||||+++.|+..+.
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345789999999999999999998653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=97.28  E-value=0.00011  Score=45.94  Aligned_cols=22  Identities=36%  Similarity=0.593  Sum_probs=19.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999864

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.28  E-value=0.00013  Score=45.52  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ...++|+|++|+|||||++.+.+.
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999999873

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=97.28  E-value=0.00012  Score=46.13  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999999863

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.28  E-value=0.00014  Score=45.97  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999999874

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.27  E-value=0.00018  Score=51.79  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=24.9

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +-.|+.++|+||||+|||||++.|+....
T Consensus       148 i~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          148 YIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             EETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             hccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            45688999999999999999999887543

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.27  E-value=0.00022  Score=46.51  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=25.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      ..+++|.|++||||||+++.|+..+....
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~   42 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHF   42 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence            45799999999999999999999877654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.27  E-value=0.00021  Score=49.34  Aligned_cols=26  Identities=27%  Similarity=0.378  Sum_probs=22.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ....++|+|++|+||||++..++..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999998764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=97.26  E-value=0.00016  Score=45.34  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=20.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..-.++++|++|+|||||++.+.+.
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999999864

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.26  E-value=0.00012  Score=45.23  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.1

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++++|++|+|||||++.+.+.
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            446899999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	6e-30
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	2e-29
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	4e-27
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	4e-27
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	5e-17
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	5e-13
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	1e-12
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	3e-12
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	5e-09
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	1e-08
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	4e-08
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-07
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	5e-07
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	7e-07
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	1e-05
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	2e-05
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	3e-05
d1a5ta2	207	c.37.1.20 (A:1-207) delta prime subunit of DNA pol	6e-05
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	7e-05
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	7e-05
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	8e-05
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	2e-04
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	2e-04
d1um8a_	364	c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2	3e-04
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	4e-04
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	5e-04
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	6e-04
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	0.001
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	0.001
d1n0wa_	242	c.37.1.11 (A:) DNA repair protein Rad51, catalytic	0.002
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.002
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	0.002
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	0.002
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.002
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	0.002
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.003
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	0.003
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	0.003
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	0.003
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	0.003
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	0.004
d1ak2a1	190	c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Co	0.004
d1ny5a2	247	c.37.1.20 (A:138-384) Transcriptional activator si	0.004

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (262), Expect = 6e-30
 Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             D   +E+ E VE  L  P  ++++G K PKGV++ GPPGTGKTLLAKA+A +    F
Sbjct: 15 AGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF 73

Query: 72 LRVVGSELIQKYLGDGPKLVR 92
            + GS+ ++ ++G G   VR
Sbjct: 74 FTISGSDFVEMFVGVGASRVR 94

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score =  103 bits (258), Expect = 2e-29
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)

Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
             +   +E+KE VE  L +P  + EMG + PKGV+L GPPG GKT LA+AVA +    F
Sbjct: 12 AGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF 70

Query: 72 LRVVGSELIQKYLGDGPKLVR 92
          +   GS+ ++ ++G G   VR
Sbjct: 71 ITASGSDFVEMFVGVGAARVR 91

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.0 bits (243), Expect = 4e-27
 Identities = 36/81 (44%), Positives = 54/81 (66%)

Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
          G L+   +E++E V+ P+ HP+ + + G+ P KGV+ YGPPG GKTLLAKA+AN+  A F
Sbjct: 10 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 69

Query: 72 LRVVGSELIQKYLGDGPKLVR 92
          + + G EL+  + G+    VR
Sbjct: 70 ISIKGPELLTMWFGESEANVR 90

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.8 bits (242), Expect = 4e-27
 Identities = 41/81 (50%), Positives = 58/81 (71%)

Query: 12 GSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
          G    Q+ +IKE VELPL HP  ++ +G+KPP+G++LYGPPGTGKTL+A+AVAN+T A F
Sbjct: 7  GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF 66

Query: 72 LRVVGSELIQKYLGDGPKLVR 92
            + G E++ K  G+    +R
Sbjct: 67 FLINGPEIMSKLAGESESNLR 87

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 72.0 bits (176), Expect = 5e-17
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 21  IKESVELPLTHPEYYEEMGIKPPKGVIL-YGPPGTGKTLLAKAVANQTSA--TFLRVVGS 77
           +  + EL    P   E  G +   G+++  G   +GKT L  A+         +  V   
Sbjct: 100 VDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFG 159

Query: 78  ELIQKYLGDGPKLVRVALVPEVRN 101
           E +  Y  D    V   +   +  
Sbjct: 160 EPLSGYNTDFNVFVD-DIARAMLQ 182

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 60.4 bits (145), Expect = 5e-13
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 9/84 (10%)

Query: 15 DVQIQE-IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
          D Q +  + +++E  +   +      ++ P   +L G PG+GKT L  A+  +T    + 
Sbjct: 8  DKQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIV 62

Query: 74 VVGSEL---IQKYLGDGPKLVRVA 94
          +           +        +  
Sbjct: 63 IDNDTFKQQHPNFDELVKLYEKDV 86

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 59.2 bits (142), Expect = 1e-12
 Identities = 13/77 (16%), Positives = 31/77 (40%)

Query: 11 RGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT 70
             +      +   ++      +  +     P   V+L GPP +GKT LA  +A +++  
Sbjct: 8  MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67

Query: 71 FLRVVGSELIQKYLGDG 87
          F+++   + +  +    
Sbjct: 68 FIKICSPDKMIGFSETA 84

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 58.5 bits (141), Expect = 3e-12
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 14  LDVQIQEIKESVELPLTHPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQTSATF 71
           L   + ++   V       ++ + M   I   +  +  GP  +GKT LA A+        
Sbjct: 129 LHCLLPKMDSVVY------DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKA 182

Query: 72  LRVVGSELIQKY-LGDGPKLVRV 93
           L V        + LG       V
Sbjct: 183 LNVNLPLDRLNFELGVAIDQFLV 205

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 49.4 bits (116), Expect = 5e-09
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ----TSAT 70
          + Q+Q++   +   L +P               L G PGTGKT+  + +       T+A 
Sbjct: 22 EQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTAR 74

Query: 71 FLRVVGSELIQKYLGDGPKLVR 92
          F+ + G          G     
Sbjct: 75 FVYINGFIYRNFTAIIGEIARS 96

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.7 bits (115), Expect = 1e-08
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83
            PK +++ GP G GKT +A+ +A   +A F++V  ++  +  
Sbjct: 47 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVG 89

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 47.1 bits (110), Expect = 4e-08
 Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 4/59 (6%)

Query: 15 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
            + + +       L       ++ +         G  G GKT LAK    + S    +
Sbjct: 22 RGEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKRVSEAAAK 76

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 44.9 bits (105), Expect = 2e-07
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 18 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77
           Q+++  +E              +P + ++L+GPPG GKT LA  +A++         G 
Sbjct: 18 KQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGP 69

Query: 78 ELIQK 82
           + + 
Sbjct: 70 AIEKP 74

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 44.0 bits (103), Expect = 5e-07
 Identities = 13/39 (33%), Positives = 25/39 (64%)

Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ 81
          PK +++ GP G GKT +A+ +A   +A F++V  ++  +
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 87

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 7e-07
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 15 DVQIQEIKESVELPLTHPEY----YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 67
             + ++K  +       +       + G    +  +LYGPPG GKT  A  VA + 
Sbjct: 20 KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 76

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 39.7 bits (91), Expect = 1e-05
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 87
          K V + G   +GK++L   +A   + T     G E + + LG  
Sbjct: 8  KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGD 51

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 39.5 bits (91), Expect = 2e-05
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 45 GVILYGPPGTGKTLLAKAVA 64
          GV+++G  GTGK+   +A+A
Sbjct: 30 GVLVFGDRGTGKSTAVRALA 49

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 38.4 bits (88), Expect = 3e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDG 87
          ++L G PG+GK+ +A+A+AN      +     +L        
Sbjct: 7  LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGR 48

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 6e-05
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQ 66
          +    +++   PG G   L  A++  
Sbjct: 22 RGHHALLIQALPGMGDDALIYALSRY 47

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 37.3 bits (85), Expect = 7e-05
 Identities = 8/41 (19%), Positives = 17/41 (41%)

Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY 83
           + +IL G    GK+ + + + +     +L      LI+  
Sbjct: 3  TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 7e-05
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVVG 76
          + V L GPPG GKT L    +    ++ + V G
Sbjct: 2  RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.6 bits (86), Expect = 8e-05
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)

Query: 18 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS 77
           +++  ++E      E            V+L GPPG GKT LA  +A++         G 
Sbjct: 18 KKKLSLALEAAKMRGEV--------LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP 69

Query: 78 ELIQK 82
           L+++
Sbjct: 70 VLVKQ 74

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (84), Expect = 2e-04
 Identities = 1/28 (3%), Positives = 9/28 (32%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLR 73
          +++ G   +    ++  +         +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPK 45

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 8/72 (11%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 28 PLTHPEYY-------EEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI 80
          P  + + +       E++        ++ G   TGK+ + K   N+ +  ++ +   +  
Sbjct: 7  PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66

Query: 81 QKYLGDGPKLVR 92
          ++        + 
Sbjct: 67 ERNYISYKDFLL 78

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 5  YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVA 64
          YK L  +  L  Q  +        L   E            ++L GP G+GKTL+A+ +A
Sbjct: 37 YKRLSFKEKLKKQDNQDSNVELEHLEEVE-------LSKSNILLIGPTGSGKTLMAQTLA 89

Query: 65 NQTSATFLRV 74
                    
Sbjct: 90 KHLDIPIAIS 99

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 4e-04
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
          + + L GP G GK+ + + +A Q +  F   
Sbjct: 3  RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS 33

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 5e-04
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 41 KPPKGVILYGPPGTGKTLLAKAVANQ 66
          +    ++LYGP GTGK     A+   
Sbjct: 31 RDLPHLLLYGPNGTGKKTRCMALLES 56

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (79), Expect = 6e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
           +L G  G+GK+ +A  VA+Q  A FL  
Sbjct: 9  YVLMGVSGSGKSAVASEVAHQLHAAFLDG 37

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 34.3 bits (77), Expect = 0.001
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 41 KPPKGVILY--GPPGTGKTLLAKAVANQTSATFLRVV 75
          +  +G  ++  G   +GK  +A+A+    +    R V
Sbjct: 2  RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 38

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 34.2 bits (77), Expect = 0.001
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 41 KPPKG--VILYGPPGTGKTLLAKAVANQTSATF 71
          + PKG  +++ G PGTGKT +A+ +A +     
Sbjct: 1  EQPKGINILITGTPGTGKTSMAEMIAAELDGFQ 33

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (75), Expect = 0.002
 Identities = 8/26 (30%), Positives = 13/26 (50%)

Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVA 64
          GI+      ++G   TGKT +   +A
Sbjct: 19 GIETGSITEMFGEFRTGKTQICHTLA 44

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 33.5 bits (75), Expect = 0.002
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
           I+ GP G GK+   K +A Q   +  
Sbjct: 5  YIITGPAGVGKSTTCKRLAAQLDNSAY 31

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 10/27 (37%), Positives = 18/27 (66%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
          ++L G PG GKT L K +A+++   ++
Sbjct: 7  ILLTGTPGVGKTTLGKELASKSGLKYI 33

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFL 72
          K ++  G  G+GK+ LA+A+A      FL
Sbjct: 1  KNIVFIGFMGSGKSTLARALAKDLDLVFL 29

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.3 bits (75), Expect = 0.002
 Identities = 7/32 (21%), Positives = 12/32 (37%)

Query: 42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLR 73
           P+ V+  G PG GK+   +          + 
Sbjct: 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 44

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 6/29 (20%), Positives = 13/29 (44%)

Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFL 72
          + + + G  G G T + + +A      F+
Sbjct: 3  EPIFMVGARGCGMTTVGRELARALGYEFV 31

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 38 MGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
          M    P  V + G PG+GK      +        L  
Sbjct: 1  MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFLRV 74
          +      GTGKT L K +     A  +R 
Sbjct: 5  LAFAAWSGTGKTTLLKKLIPALCARGIRP 33

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 40 IKPPKGVILYGPPGTGKTLLAKAVANQTSATFL 72
          +K  K + + G PG+GK    + +  +   T L
Sbjct: 5  LKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHL 37

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 46 VILYGPPGTGKTLLAKAVANQTSATFL 72
           +L G PG+GK+ + + +A       L
Sbjct: 4  AVLVGLPGSGKSTIGRRLAKALGVGLL 30

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.0 bits (74), Expect = 0.003
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRV 74
          P  +++ G P  GKT ++K +    +   +  
Sbjct: 2  PTLIVMVGLPARGKTYISKKLTRYLNFIGVPT 33

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (74), Expect = 0.003
 Identities = 6/32 (18%), Positives = 13/32 (40%)

Query: 44 KGVILYGPPGTGKTLLAKAVANQTSATFLRVV 75
          K ++L G  G G+  +   +  +    F   +
Sbjct: 4  KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 35

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 32.7 bits (73), Expect = 0.004
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 39 GIKPPKGVILYGPPGTGKTLLAKAVA 64
           +       L  P G GK++LA  +A
Sbjct: 25 NMVAGTVGALVSPGGAGKSMLALQLA 50

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

 Score = 32.6 bits (73), Expect = 0.004
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 43 PKGV--ILYGPPGTGKTLLAKAVANQ 66
          PKGV  +L GPPG GK   A  +A  
Sbjct: 1  PKGVRAVLLGPPGAGKGTQAPKLAKN 26

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 32.6 bits (74), Expect = 0.004
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 46 VILYGPPGTGKTLLAKAVANQ 66
          V++ G  G GK ++A+ +   
Sbjct: 26 VLITGESGVGKEVVARLIHKL 46

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.83
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.82
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.81
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.76
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.64
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.63
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.62
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.62
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.62
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.62
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.61
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.59
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.59
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.58
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.56
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.56
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.56
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.55
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.54
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.52
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.51
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.46
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.41
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.41
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.41
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.34
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.31
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.31
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.1
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.09
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.05
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.01
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.97
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.94
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.94
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.91
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.89
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.86
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.83
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.78
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.74
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.73
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.73
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.7
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.7
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.65
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.63
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	98.63
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.63
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.59
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.58
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.58
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.57
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.55
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.54
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	98.52
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.51
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.5
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.48
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.47
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.47
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.45
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.45
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.44
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.42
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.41
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.4
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.39
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.38
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.37
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	98.36
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.35
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.35
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.35
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.33
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.31
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.31
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.28
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.24
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	98.22
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.21
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.2
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.19
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.17
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.17
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.16
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.14
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	98.13
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.13
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.12
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.11
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.1
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	98.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.05
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.0
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.96
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.92
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.92
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.92
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.91
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.9
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.89
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.89
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.89
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.88
d1okkd2	207	GTPase domain of the signal recognition particle r	97.88
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.85
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.85
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.85
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.84
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.84
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.84
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.84
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.83
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.82
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.82
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.81
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.81
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.81
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	97.79
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.78
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.77
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.76
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.76
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.73
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.73
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.73
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.72
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.72
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.71
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.71
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.71
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.69
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.69
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.68
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.68
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.66
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.65
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.63
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.62
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.62
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.61
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.61
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.6
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.6
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.58
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.58
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.56
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.55
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.54
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.54
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.53
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.52
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.49
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.49
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.48
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.46
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.46
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.45
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.45
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.45
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.44
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.43
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.43
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.43
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.42
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.42
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.4
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.4
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.38
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.38
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.36
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.34
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.34
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.33
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.32
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.3
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.29
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.27
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.26
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.21
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.19
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.19
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.18
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.18
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	97.17
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	97.16
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.16
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.15
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.15
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.14
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.11
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.11
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.1
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	97.08
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.08
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.04
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	97.03
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.99
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.98
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.94
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.91
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.84
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.83
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.73
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.71
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.66
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.6
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.59
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.55
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.42
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	96.39
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.33
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.33
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	96.25
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	96.23
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	96.21
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.21
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.12
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	96.05
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	96.02
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.01
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	96.0
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	95.92
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.92
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.9
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.84
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	95.84
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	95.76
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.75
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.65
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.61
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	95.55
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.55
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	95.48
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	95.47
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	95.33
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.27
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	95.18
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	95.15
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	95.13
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.12
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	95.09
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	95.04
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	95.03
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	94.92
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	94.86
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.84
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	94.75
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	94.7
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	94.58
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	94.47
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	94.46
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.38
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	94.3
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	94.09
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	94.09
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	94.05
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	93.96
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	93.65
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	93.56
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	93.3
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	93.25
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.08
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	92.86
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.77
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	92.54
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.44
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	91.29
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	91.14
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	90.8
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	90.38
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.17
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	90.11
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	89.26
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	88.85
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	87.72
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.64
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	86.26
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	86.18
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	85.9
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	83.05
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	81.93
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	81.33
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	81.3
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	80.24

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1e-20  Score=125.08  Aligned_cols=93  Identities=45%  Similarity=0.818  Sum_probs=83.9

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccC
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG   85 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~   85 (102)
                      ++|+||+|+++++++|++.+.+++.+++.+.++++.++++++|+||||||||+++++++.....+.+.+...++...+.+
T Consensus         1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g   80 (258)
T d1e32a2           1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG   80 (258)
T ss_dssp             CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred             CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999998888887877


Q ss_pred             chHHHHHHccchh
Q psy16321         86 DGPKLVRVALVPE   98 (102)
Q Consensus        86 ~~~~~~~~~~~~q   98 (102)
                      ..+...+..|..+
T Consensus        81 ~~~~~l~~~f~~A   93 (258)
T d1e32a2          81 ESESNLRKAFEEA   93 (258)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHH
Confidence            7776666555443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.5e-20  Score=124.39  Aligned_cols=93  Identities=37%  Similarity=0.643  Sum_probs=79.0

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL   84 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~   84 (102)
                      .++|+|++|+++++++|++.+.+ +.+++.+.++++..+++++|+||||||||+++++||..++.+.+.++..++...+.
T Consensus         8 ~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~   86 (256)
T d1lv7a_           8 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV   86 (256)
T ss_dssp             CCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCC
T ss_pred             CCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcch
Confidence            46899999999999999998876 77888899999899999999999999999999999999999999999999998999


Q ss_pred             CchHHHHHHccchh
Q psy16321         85 GDGPKLVRVALVPE   98 (102)
Q Consensus        85 ~~~~~~~~~~~~~q   98 (102)
                      ++++.+.+..|..+
T Consensus        87 g~~~~~l~~~f~~A  100 (256)
T d1lv7a_          87 GVGASRVRDMFEQA  100 (256)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99888776666543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.81  E-value=4.3e-20  Score=121.61  Aligned_cols=93  Identities=38%  Similarity=0.652  Sum_probs=83.1

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +.++|++|+|++++++.|++.+.+ +.+++.+.++++..+.+++|+||||||||+++++|+..++.+.+.++..++..++
T Consensus         4 p~~~~~di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~   82 (247)
T d1ixza_           4 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF   82 (247)
T ss_dssp             CSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSC
T ss_pred             CCCcHHHHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhcc
Confidence            457999999999999999998765 8888999999999999999999999999999999999999999999999998899


Q ss_pred             cCchHHHHHHccch
Q psy16321         84 LGDGPKLVRVALVP   97 (102)
Q Consensus        84 ~~~~~~~~~~~~~~   97 (102)
                      .++++.+.+..|..
T Consensus        83 ~g~~~~~l~~~f~~   96 (247)
T d1ixza_          83 VGVGAARVRDLFET   96 (247)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH
Confidence            99888776655544

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.8e-19  Score=119.50  Aligned_cols=93  Identities=39%  Similarity=0.732  Sum_probs=84.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +-++|++|+|+++++++|++.+.+++.+++.+.++++.++.+++|+||||||||++++++|+.++.+.+.+...++...+
T Consensus         2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~   81 (265)
T d1r7ra3           2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW   81 (265)
T ss_dssp             CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSC
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhcc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999988888878


Q ss_pred             cCchHHHHHHccc
Q psy16321         84 LGDGPKLVRVALV   96 (102)
Q Consensus        84 ~~~~~~~~~~~~~   96 (102)
                      .+..+...+..|.
T Consensus        82 ~~~~~~~l~~~f~   94 (265)
T d1r7ra3          82 FGESEANVREIFD   94 (265)
T ss_dssp             TTTHHHHHHHHHH
T ss_pred             ccchHHHHHHHHH
Confidence            8877766665554

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.64  E-value=3.7e-17  Score=106.43  Aligned_cols=65  Identities=22%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH----HHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP----KLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~q~~~  101 (102)
                      +|++.+|++++|+||||||||||+++|+|+.+|+.|+|...+.........+    ++.+++|+||+++
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~   93 (230)
T d1l2ta_          25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN   93 (230)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred             EEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchh
Confidence            6789999999999999999999999999999999998877654333233222    2346999999863

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=2.4e-17  Score=107.41  Aligned_cols=63  Identities=22%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      +|++++|++++|+||||||||||+++|+|+.+|+.|.|...+......  ...+++++|+||+++
T Consensus        20 sl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~--~~~~r~ig~v~Q~~~   82 (232)
T d2awna2          20 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PPAERGVGMVFQSYA   82 (232)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTS--CGGGTCEEEECSSCC
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCC--chhhceeeeeccccc
Confidence            577899999999999999999999999999999988887654322222  223456999999863

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.62  E-value=4.6e-17  Score=105.89  Aligned_cols=63  Identities=19%  Similarity=0.249  Sum_probs=51.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      +|++.+|++++|+||||||||||+++|+|+..|+.|+|...+....  .....+++++|+||+++
T Consensus        20 s~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~--~~~~~~r~ig~v~Q~~~   82 (229)
T d3d31a2          20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYS   82 (229)
T ss_dssp             EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECT--TSCHHHHTCEEECTTCC
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEecc--ccchhHhcceeeccccc
Confidence            5788999999999999999999999999999999888876543222  22344567999999863

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.8e-17  Score=106.11  Aligned_cols=64  Identities=20%  Similarity=0.155  Sum_probs=55.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|++++|+.++|+||||||||||+++|+|+++|..|.|..++...........+++++|++|++
T Consensus        34 sl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~   97 (251)
T d1jj7a_          34 TFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEP   97 (251)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccc
Confidence            4678999999999999999999999999999999888877665445555666778899999986

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=3.4e-17  Score=107.12  Aligned_cols=63  Identities=27%  Similarity=0.320  Sum_probs=48.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~~  101 (102)
                      +|++.+|++++|+||||||||||+++|+|+++|+.|.|...+.......  +.+++++|+||+++
T Consensus        26 sl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~--~~~r~ig~v~Q~~~   88 (239)
T d1v43a3          26 NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP--PKDRNISMVFQSYA   88 (239)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--GGGGTEEEEEC---
T ss_pred             eEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCC--cccceEEEEeechh
Confidence            5789999999999999999999999999999999888876644222222  23457999999863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=6.8e-17  Score=105.86  Aligned_cols=64  Identities=17%  Similarity=0.091  Sum_probs=54.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|.+++|+.++|+||||||||||+++|+|++.|..|.|..++.........+.+.+++|++|++
T Consensus        23 sl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~   86 (241)
T d2pmka1          23 NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDN   86 (241)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEeccc
Confidence            5678999999999999999999999999999999988877665445555667778899999986

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=7.1e-17  Score=105.65  Aligned_cols=65  Identities=15%  Similarity=0.109  Sum_probs=50.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCc---hHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGD---GPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~q~~~  101 (102)
                      +|++.+|++++|+||||||||||+++|+|+.+|+.|+|...+........   ...+++++|+||+++
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~   92 (240)
T d3dhwc1          25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFN   92 (240)
T ss_dssp             EEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred             eEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccc
Confidence            57889999999999999999999999999999998888765432222221   233467999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.59  E-value=1.5e-16  Score=104.79  Aligned_cols=64  Identities=20%  Similarity=0.147  Sum_probs=54.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|++.|..|+|..++...........+.+++|++|++
T Consensus        35 sl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~   98 (253)
T d3b60a1          35 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV   98 (253)
T ss_dssp             EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeecc
Confidence            5678999999999999999999999999999999998887665445555666777899999986

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.59  E-value=3.2e-17  Score=107.48  Aligned_cols=64  Identities=13%  Similarity=0.114  Sum_probs=52.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|.+++|+.++|+||||||||||+++|+|+++|+.|+|..++.........+.+.+++|++|++
T Consensus        22 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~   85 (242)
T d1mv5a_          22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS   85 (242)
T ss_dssp             EEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEcccc
Confidence            4678999999999999999999999999999999887766554334444445566799999986

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.58  E-value=4.4e-17  Score=106.72  Aligned_cols=65  Identities=17%  Similarity=0.216  Sum_probs=50.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc---cCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY---LGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~q~~~  101 (102)
                      ++++.+|+.++|+||||||||||+++|+|+..|+.|++...+.....   ......+++++|+||+++
T Consensus        25 sl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~   92 (242)
T d1oxxk2          25 NINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA   92 (242)
T ss_dssp             EEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccc
Confidence            57889999999999999999999999999999998888765432211   112334456999999863

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.56  E-value=7.9e-17  Score=105.42  Aligned_cols=65  Identities=22%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhcc----CchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYL----GDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~q~~~  101 (102)
                      +|++.+|++++|+||||||||||+++|+|++.|+.|.|...+......    ....++++++|+||+++
T Consensus        23 sl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~   91 (240)
T d1g2912          23 SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA   91 (240)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred             eeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchh
Confidence            577899999999999999999999999999999988887654321111    11233456999999863

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.56  E-value=4.5e-16  Score=102.56  Aligned_cols=64  Identities=14%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchH-HHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGP-KLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~q~~  100 (102)
                      +|++.+|++++|+||||||||||+++|+|+++|+.|+|...+.........+ .+..++|+||++
T Consensus        24 s~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~   88 (254)
T d1g6ha_          24 SISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTP   88 (254)
T ss_dssp             CCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCC
T ss_pred             EEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCcc
Confidence            5678999999999999999999999999999999888876543222223233 334588999986

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.56  E-value=5.1e-16  Score=102.53  Aligned_cols=65  Identities=11%  Similarity=0.081  Sum_probs=50.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc-------------cCchHHHHHHccchhhhc
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY-------------LGDGPKLVRVALVPEVRN  101 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~~~~~q~~~  101 (102)
                      +|++.+|++++|+||||||||||+++|+|+++|+.|+|...+.....             ......+++++|+||+++
T Consensus        22 s~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~   99 (258)
T d1b0ua_          22 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN   99 (258)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCC
T ss_pred             eeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEechh
Confidence            57789999999999999999999999999999998888655332110             112345567999999863

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.55  E-value=3.5e-16  Score=103.14  Aligned_cols=64  Identities=19%  Similarity=0.177  Sum_probs=55.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++.+++|+.++|+||||||||||+++|+|++.|..|.|..++.........+.+.+++|++|++
T Consensus        38 sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~  101 (255)
T d2hyda1          38 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN  101 (255)
T ss_dssp             EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSC
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccc
Confidence            4678999999999999999999999999999999988877655445556667778899999985

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.54  E-value=6.4e-16  Score=101.11  Aligned_cols=64  Identities=25%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHH-HHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPK-LVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~q~~  100 (102)
                      +|++++|++++|+||||||||||+++|+|+++|+.|+|...+........... +..++|++|++
T Consensus        26 s~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~   90 (240)
T d1ji0a_          26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGR   90 (240)
T ss_dssp             EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSC
T ss_pred             eEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCccc
Confidence            57789999999999999999999999999999998887755432222222222 22377888875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.52  E-value=7e-16  Score=100.81  Aligned_cols=61  Identities=20%  Similarity=0.258  Sum_probs=46.4

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++. ++.++|+||||||||||+++|+|+++|+.|.|..++.......  ..+++++|+||++
T Consensus        19 s~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~--~~~r~ig~v~Q~~   79 (240)
T d2onka1          19 DFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDY   79 (240)
T ss_dssp             EEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSC
T ss_pred             EEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCC--HHHcCceeeccch
Confidence            34443 4789999999999999999999999999888876644222222  2345799999985

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.51  E-value=1.8e-15  Score=98.85  Aligned_cols=63  Identities=17%  Similarity=0.080  Sum_probs=49.2

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      +|++.+|++++|+||||||||||+++|+|++.|+.|.+...+..... .....+..++|+||++
T Consensus        22 s~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i~~vpq~~   84 (238)
T d1vpla_          22 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEA   84 (238)
T ss_dssp             EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTC
T ss_pred             eeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhEeEeeecc
Confidence            46789999999999999999999999999999998888654432111 1123455689999975

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.46  E-value=3.4e-15  Score=95.21  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=45.3

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEV   99 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~   99 (102)
                      ++++++|+.++|+||||||||||+++|+|+++|..|+|..++....     ..+.++.|++|+
T Consensus        21 s~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~-----~~~~~i~~~~~~   78 (200)
T d1sgwa_          21 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEE   78 (200)
T ss_dssp             EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSS
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehh-----HhcCcEEEEeec
Confidence            4678999999999999999999999999999999998876543221     122346666664

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=1.6e-13  Score=88.33  Aligned_cols=68  Identities=25%  Similarity=0.287  Sum_probs=54.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      .+++|++++|.+++++.|+..+......        -.....++|+|||||||||++++++..++...+.+++.+.
T Consensus         4 RP~~~~divGqe~~~~~l~~~i~~~~~~--------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~   71 (238)
T d1in4a2           4 RPKSLDEFIGQENVKKKLSLALEAAKMR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL   71 (238)
T ss_dssp             SCSSGGGCCSCHHHHHHHHHHHHHHHHH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred             CCCcHHHcCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCccc
Confidence            3679999999999999999988653211        1223478999999999999999999999988877765443

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=2.2e-14  Score=95.57  Aligned_cols=42  Identities=21%  Similarity=0.238  Sum_probs=37.9

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      ++.+.+|+.++|+||||||||||+++|+|++.|..|.|....
T Consensus        56 sl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g   97 (281)
T d1r0wa_          56 NLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG   97 (281)
T ss_dssp             EEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS
T ss_pred             EEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC
Confidence            467899999999999999999999999999999988886543

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.41  E-value=3.2e-13  Score=87.03  Aligned_cols=68  Identities=25%  Similarity=0.407  Sum_probs=54.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      .+++|++++|.++.+++|+..+......        -.....++|+||||+||||+++++++.+..+...++..+.
T Consensus         4 RP~~~ddivGq~~~~~~L~~~i~~~~~~--------~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~   71 (239)
T d1ixsb2           4 RPKTLDEYIGQERLKQKLRVYLEAAKAR--------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI   71 (239)
T ss_dssp             CCCSGGGSCSCHHHHHHHHHHHHHHTTS--------SSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcc
Confidence            4789999999999999999887653321        1234579999999999999999999999887766665443

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.34  E-value=1.1e-13  Score=89.91  Aligned_cols=63  Identities=16%  Similarity=0.113  Sum_probs=45.0

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhccCchHHHHHHccchhhh
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRVALVPEVR  100 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~q~~  100 (102)
                      ++++.+|++++|+||||||||||+++|+|+. +..+.+...+.........+.+...+|++|+.
T Consensus        19 sl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~   81 (231)
T d1l7vc_          19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQ   81 (231)
T ss_dssp             EEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCC
T ss_pred             EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccc
Confidence            6778999999999999999999999999975 45566544332223333444555667777653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1.6e-12  Score=84.05  Aligned_cols=75  Identities=23%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChH----HHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPE----YYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~----~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .+++|++++|.++.+++|++.+........    ............++|+||||+||||+++++|..+......++..+
T Consensus         9 ~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~   87 (253)
T d1sxja2           9 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD   87 (253)
T ss_dssp             CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence            477999999999999999998754221110    001122334567999999999999999999999988877776554

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.31  E-value=4.8e-13  Score=89.87  Aligned_cols=80  Identities=18%  Similarity=0.263  Sum_probs=57.0

Q ss_pred             cCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh--hccCch
Q psy16321         11 RGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ--KYLGDG   87 (102)
Q Consensus        11 i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~--~~~~~~   87 (102)
                      +.|.++.++.+.+.+..++....+..... -.++.+++|+||||||||+|+++||..+..+...++..++..  .+.+..
T Consensus        16 ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~   95 (309)
T d1ofha_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV   95 (309)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGST
T ss_pred             ccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeec
Confidence            68999999999988854433222211111 125678999999999999999999999998888888877642  244444


Q ss_pred             HHH
Q psy16321         88 PKL   90 (102)
Q Consensus        88 ~~~   90 (102)
                      +..
T Consensus        96 ~~~   98 (309)
T d1ofha_          96 DSI   98 (309)
T ss_dssp             THH
T ss_pred             ccc
Confidence            443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.10  E-value=1.2e-10  Score=75.87  Aligned_cols=72  Identities=21%  Similarity=0.351  Sum_probs=49.6

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhhhc
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQKY   83 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~~~   83 (102)
                      +.|.|..+.++.+.+.......   ...+....+...++|+||||||||+++++||...+.+++.+...+....+
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~---~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~   80 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQ---QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGF   80 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHH---HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTC
T ss_pred             cCCcCcCHHHHHHHHHHHHHHH---HHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccc
Confidence            3455555555555555443322   22333445677899999999999999999999999999888876654433

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.09  E-value=7.7e-11  Score=76.22  Aligned_cols=42  Identities=26%  Similarity=0.504  Sum_probs=36.1

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI   80 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~   80 (102)
                      ....++.++|+|||||||||++++|++.+...+..++.+++.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~   69 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   69 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHH
Confidence            345678899999999999999999999998888888776553

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.05  E-value=1.6e-10  Score=73.78  Aligned_cols=62  Identities=26%  Similarity=0.359  Sum_probs=47.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc-----cEEEEccch
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA-----TFLRVVGSE   78 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~-----~~~~i~~~~   78 (102)
                      .+++|+++.|.++.++.|++.+...             ....++|+||||+||||++++++..+..     ...+++..+
T Consensus        19 ~P~~~~diig~~~~~~~l~~~i~~~-------------~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~   85 (231)
T d1iqpa2          19 RPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD   85 (231)
T ss_dssp             CCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcC-------------CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCc
Confidence            4678999999999999999887431             1235899999999999999999987532     345555443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.01  E-value=1.1e-10  Score=71.30  Aligned_cols=32  Identities=28%  Similarity=0.471  Sum_probs=27.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEEcc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRVVG   76 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~   76 (102)
                      .++|+||||||||||+++|++.+++..+.+..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~   33 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWT   33 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEE
Confidence            37899999999999999999999887665543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.97  E-value=6.1e-11  Score=79.98  Aligned_cols=68  Identities=22%  Similarity=0.205  Sum_probs=53.4

Q ss_pred             CChHHHHhcCCCCCceeE-EECCCCCChhHHHHHHHhhhC--ccEEEEccchhhhhccCchHHHHHHccch
Q psy16321         30 THPEYYEEMGIKPPKGVI-LYGPPGTGKTLLAKAVANQTS--ATFLRVVGSELIQKYLGDGPKLVRVALVP   97 (102)
Q Consensus        30 ~~~~~~~~~~i~~~~~~~-l~Gp~GsGKStl~~~i~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   97 (102)
                      ..+..+..+....+++++ ++||||||||.++++||+.+.  ..++.+.+.++.++|.++.+.+.+..|..
T Consensus       109 ~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~  179 (321)
T d1w44a_         109 CSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARA  179 (321)
T ss_dssp             BCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHH
T ss_pred             cchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHH
Confidence            455556666655556655 479999999999999999975  45788999999999999999888766643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=6.4e-10  Score=70.69  Aligned_cols=52  Identities=19%  Similarity=0.229  Sum_probs=42.5

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+++|+++.|.+++++.|++.+.-          -.+   ..++|+||+|+||||++++++..+.
T Consensus        10 rP~~~~d~ig~~~~~~~L~~~~~~----------~~~---~~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          10 RPQVLSDIVGNKETIDRLQQIAKD----------GNM---PHMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             CCSSGGGCCSCTHHHHHHHHHHHS----------CCC---CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHhcCCHHHHHHHHHHHHc----------CCC---CeEEEECCCCCCchhhHHHHHHHHh
Confidence            478999999999999999887642          111   2488999999999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=8.3e-10  Score=70.08  Aligned_cols=52  Identities=27%  Similarity=0.406  Sum_probs=42.6

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+++++++.|.+++++.|+..+...          .+   ..++|+||+|+||||++++++..+.
T Consensus         9 rP~~~~divg~~~~~~~L~~~i~~~----------~~---~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2           9 RPETLDEVYGQNEVITTVRKFVDEG----------KL---PHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CCSSGGGCCSCHHHHHHHHHHHHTT----------CC---CCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcC----------CC---CeEEEECCCCCChhHHHHHHHHHhh
Confidence            4789999999999999998876421          11   2488999999999999999998753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=4.5e-10  Score=72.09  Aligned_cols=53  Identities=25%  Similarity=0.301  Sum_probs=41.6

Q ss_pred             cccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          3 CSYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         3 ~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+++|+++.|.+++++.|+..+....            ....++|+||+|+||||++++++..+
T Consensus         5 y~P~~~~diig~~~~~~~L~~~~~~~~------------~~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2           5 YRPKSLNALSHNEELTNFLKSLSDQPR------------DLPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             TCCCSGGGCCSCHHHHHHHHTTTTCTT------------CCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             cCCCCHHHccCcHHHHHHHHHHHHcCC------------CCCeEEEECCCCCCHHHHHHHHHHhh
Confidence            357899999999998888876553211            12258899999999999999999865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=5.6e-10  Score=71.02  Aligned_cols=51  Identities=27%  Similarity=0.440  Sum_probs=41.7

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+++|+++.|.++.++.|+..+...             ....++|+||+|+||||++++++..+
T Consensus         7 ~P~~~~diig~~~~~~~l~~~i~~~-------------~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2           7 RPKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CCSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcC-------------CCCeEEEECCCCCChHHHHHHHHHHH
Confidence            4679999999999998888776421             12248999999999999999999875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.86  E-value=1.5e-09  Score=75.89  Aligned_cols=68  Identities=21%  Similarity=0.376  Sum_probs=51.0

Q ss_pred             cCChHHHHHHHHHHhhhhcCChHHHHhc--CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321         11 RGSLDVQIQEIKESVELPLTHPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus        11 i~g~~~~~~~i~~~~~~~~~~~~~~~~~--~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      ++|.++.++.+.-.+.-.++.......+  .+ .+++++++||+|||||.|+|.||+.++.++..+++..+
T Consensus        16 VvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei-~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~f   85 (443)
T d1g41a_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEV-TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (443)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTC-CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhhccccccccc-ccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeeccee
Confidence            7888999988877775444322221222  22 25699999999999999999999999999988877655

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.83  E-value=1.3e-09  Score=66.04  Aligned_cols=37  Identities=27%  Similarity=0.431  Sum_probs=31.7

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEEEEccch
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSE   78 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~   78 (102)
                      .|+.++|.|||||||||+++.|+..++.+...+....
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~   39 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD   39 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHH
Confidence            4788999999999999999999998887777776543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.78  E-value=3.9e-09  Score=67.64  Aligned_cols=53  Identities=26%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+.|-+.+++.|.+.+...+..+      + ..+.+++|+||+|+||||+++.++..+.
T Consensus        16 ~~l~~Re~ei~~l~~~l~~~l~~~------~-~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          16 KRLPHREQQLQQLDILLGNWLRNP------G-HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHST------T-SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCC------C-CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            568899999999998876433222      1 3456899999999999999999998764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.74  E-value=3.1e-09  Score=64.45  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=28.0

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      .+.++|.||+|||||||+++|+..++.+.....
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~   39 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEY   39 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeee
Confidence            468999999999999999999998877655443

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.73  E-value=4.9e-09  Score=71.55  Aligned_cols=43  Identities=26%  Similarity=0.179  Sum_probs=37.6

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchhhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELIQ   81 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~~   81 (102)
                      +++...+++|+||||+|||+++++|++.+...++++++++..+
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs  192 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL  192 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTH
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhh
Confidence            5677889999999999999999999999999988887766543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=5.4e-09  Score=62.13  Aligned_cols=30  Identities=30%  Similarity=0.645  Sum_probs=26.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      +.+.|+||+||||||+++.|+..++.+.+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id   32 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD   32 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            568899999999999999999998876543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.70  E-value=7.8e-09  Score=62.36  Aligned_cols=33  Identities=18%  Similarity=0.329  Sum_probs=27.9

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEEEc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRVV   75 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~   75 (102)
                      .+.++|.|||||||||+++.|+..++.....+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~   35 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEee
Confidence            468999999999999999999999876655443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=1.9e-08  Score=64.54  Aligned_cols=53  Identities=15%  Similarity=0.249  Sum_probs=43.2

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+++|+++.|.++.++.|+..+...            ..+..++|+||+|+||||++++++..+.
T Consensus         7 rP~~~~dlig~~~~~~~L~~~i~~~------------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_           7 RPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             CCSSGGGSCSCHHHHHHHHHHHHTT------------CCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCHHHccChHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            4689999999999999998876431            1234688999999999999999988653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=1.2e-08  Score=61.58  Aligned_cols=32  Identities=38%  Similarity=0.528  Sum_probs=27.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      ..+..++|.|||||||||+++.|+..++....
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~   35 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFL   35 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            35678999999999999999999998876543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.63  E-value=1e-08  Score=61.95  Aligned_cols=28  Identities=21%  Similarity=0.252  Sum_probs=24.9

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+|.++.|+|+|||||||++++|+..++
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4677899999999999999999998764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=98.63  E-value=1.7e-08  Score=67.48  Aligned_cols=50  Identities=18%  Similarity=0.183  Sum_probs=38.2

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .|.+|.|.+..+..|.-....             ..+.+++|.||||+||||++|.++.++++
T Consensus         5 ~f~~I~Gq~~~kral~laa~~-------------~~~h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_           5 PFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             ChhhccCcHHHHHHHHHHHhc-------------cCCCeEEEECCCCccHHHHHHHHHHhCCC
Confidence            588999999887765533321             11236999999999999999999998754

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.63  E-value=1.3e-08  Score=61.18  Aligned_cols=29  Identities=34%  Similarity=0.731  Sum_probs=25.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .++|.|||||||||+++.|+..++...+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~   34 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYIN   34 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence            57799999999999999999988776543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.59  E-value=2.2e-08  Score=60.39  Aligned_cols=29  Identities=31%  Similarity=0.555  Sum_probs=25.0

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +++-.++|+|||||||||+++.|+..++.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            34567999999999999999999988764

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.6e-08  Score=61.17  Aligned_cols=25  Identities=40%  Similarity=0.667  Sum_probs=22.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++++|+||||||||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5799999999999999999999764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.58  E-value=2e-08  Score=60.17  Aligned_cols=27  Identities=37%  Similarity=0.525  Sum_probs=23.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +.++|.|||||||||+++.|+..++..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~~~   29 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLDNS   29 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            468899999999999999999887654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=9.8e-08  Score=63.74  Aligned_cols=67  Identities=22%  Similarity=0.284  Sum_probs=47.3

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccchh
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGSEL   79 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~   79 (102)
                      +.+.|.++.++.+.+.+......-   .+ .-.+...++++||+|+|||.|+++||..+..+...++..+.
T Consensus        22 ~~viGQ~~a~~~v~~~v~~~~~~l---~~-~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~   88 (315)
T d1r6bx3          22 MLVFGQDKAIEALTEAIKMARAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEY   88 (315)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTC---SC-TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred             CeecChHHHHHHHHHHHHHHHccC---CC-CCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccc
Confidence            356888888888887774322110   00 01233468899999999999999999999888877776554

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.55  E-value=3.6e-08  Score=60.96  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=26.5

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      ..+..++|+|||||||||+++.|+..++...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~   34 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVH   34 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCce
Confidence            4567899999999999999999999876543

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.54  E-value=3.6e-08  Score=59.72  Aligned_cols=30  Identities=33%  Similarity=0.573  Sum_probs=26.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      .+.|+|+|||||||+++.||..++.+++..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~   31 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDS   31 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence            578899999999999999999998876654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=98.52  E-value=8.5e-08  Score=65.32  Aligned_cols=70  Identities=20%  Similarity=0.291  Sum_probs=47.9

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHH------------------HHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEY------------------YEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~------------------~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +-|.|.++.++.+..++...++....                  ..+.+. +...++++||+|+|||-++|+||..+..+
T Consensus        17 ~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~-p~~niLfiGPTGvGKTElAk~LA~~~~~~   95 (364)
T d1um8a_          17 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVEL-SKSNILLIGPTGSGKTLMAQTLAKHLDIP   95 (364)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTC-CCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccC-CCcceeeeCCCCccHHHHHHHHHhhcccc
Confidence            34788888888887766432221111                  111232 45679999999999999999999998877


Q ss_pred             EEEEccchh
Q psy16321         71 FLRVVGSEL   79 (102)
Q Consensus        71 ~~~i~~~~~   79 (102)
                      +..++....
T Consensus        96 ~ir~D~s~~  104 (364)
T d1um8a_          96 IAISDATSL  104 (364)
T ss_dssp             EEEEEGGGC
T ss_pred             eeehhhhhc
Confidence            777765543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=6.2e-08  Score=60.03  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=26.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +...+++|+|||||||||+++.|+..++...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g~~~   36 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVH   36 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSSCEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            3456799999999999999999999886644

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.50  E-value=5e-08  Score=59.36  Aligned_cols=31  Identities=19%  Similarity=0.415  Sum_probs=26.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      +.+.|+|++||||||+++.||..++.+++..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~   33 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence            4577899999999999999999988876543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.8e-08  Score=61.87  Aligned_cols=28  Identities=29%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .|.++.|+|+|||||||+++.|+..+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4678889999999999999999987643

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.47  E-value=8.6e-08  Score=59.08  Aligned_cols=30  Identities=30%  Similarity=0.463  Sum_probs=25.2

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +|-.++|+|||||||||+++.||..++...
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~g~~~   31 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCH   31 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence            455678899999999999999998876544

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=4.4e-08  Score=58.73  Aligned_cols=24  Identities=29%  Similarity=0.234  Sum_probs=21.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhC
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +++|+|++|||||||++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998654

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.45  E-value=8e-08  Score=59.52  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=26.6

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      ..+.++.|+|||||||||+++.|+..++...
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~   36 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTH   36 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCee
Confidence            3567899999999999999999999876543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.45  E-value=8.4e-08  Score=58.42  Aligned_cols=29  Identities=24%  Similarity=0.463  Sum_probs=24.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .++|+|||||||||+++.|+..++...+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~   30 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceec
Confidence            37899999999999999999988765443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.44  E-value=5.9e-08  Score=57.48  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.++|.|||||||||+++.|+...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            468899999999999999886543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=7.6e-08  Score=58.25  Aligned_cols=29  Identities=28%  Similarity=0.576  Sum_probs=25.0

Q ss_pred             eEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         46 VILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      +.|+|++||||||+++.|+..++.+++..
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~   32 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDT   32 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            55679999999999999999998877643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.41  E-value=2.3e-07  Score=56.70  Aligned_cols=28  Identities=21%  Similarity=0.177  Sum_probs=23.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+-+++|.||+|||||||++.|+..+..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~   48 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLRE   48 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            3446889999999999999999986653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.40  E-value=9.3e-08  Score=57.84  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=23.4

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+.++|.||+||||||+++.|+..+..
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999987643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=1.2e-07  Score=58.28  Aligned_cols=26  Identities=23%  Similarity=0.514  Sum_probs=23.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      |+.+.|+|||||||||+++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            67899999999999999999987654

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=1.4e-07  Score=58.81  Aligned_cols=27  Identities=33%  Similarity=0.497  Sum_probs=24.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      +++|.|||||||+|+++.|+..++...
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~   31 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHL   31 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            889999999999999999999887654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.5e-07  Score=57.95  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=24.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      -.++|.|||||||||.++.|+..++...
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g~~~   29 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYGYTH   29 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence            3689999999999999999999886543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.37  E-value=1.6e-07  Score=57.47  Aligned_cols=29  Identities=24%  Similarity=0.517  Sum_probs=24.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .++|+|||||||||+++.|+..++...+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is   30 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS   30 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence            37889999999999999999988765443

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.36  E-value=1.7e-07  Score=58.75  Aligned_cols=28  Identities=32%  Similarity=0.584  Sum_probs=24.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|.|||||||||+++.|+..++...+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~i   32 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYL   32 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            4678899999999999999998876543

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.35  E-value=1.6e-07  Score=57.41  Aligned_cols=29  Identities=34%  Similarity=0.567  Sum_probs=24.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLR   73 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~   73 (102)
                      .++|.|||||||||+++.|+..++...+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~   30 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIS   30 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            47889999999999999999988765443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.35  E-value=6.9e-08  Score=61.93  Aligned_cols=55  Identities=16%  Similarity=-0.048  Sum_probs=36.4

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.+.|-+.+++.|.+.+..+..+..    -.-+....++|+||||+|||+++++++..+
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~----~~~~~~~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGA----GLSDVNMIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSS----CBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCC----CCCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence            5677778888888876644322110    000112245677999999999999999875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=2.4e-07  Score=56.78  Aligned_cols=30  Identities=23%  Similarity=0.338  Sum_probs=25.0

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      -+.+..++++|+|||||||+++.++...+.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~   40 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGY   40 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            356789999999999999999998765543

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.33  E-value=1.5e-07  Score=57.95  Aligned_cols=28  Identities=18%  Similarity=0.343  Sum_probs=24.3

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      -.++|.|||||||||+++.|+..++...
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~~~~   31 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQLAH   31 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHCCcE
Confidence            3688999999999999999999887654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=2.4e-07  Score=56.52  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=23.8

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .++|+|||||||||+++.|+..++...+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i   29 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQI   29 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence            4678999999999999999998876543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.31  E-value=2.2e-07  Score=57.61  Aligned_cols=34  Identities=18%  Similarity=0.461  Sum_probs=26.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEEEEccchhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFLRVVGSELI   80 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~~~~   80 (102)
                      .++|+|||||||||+++.|+..++...  ++..++.
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g~~~--is~gdll   41 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFELKH--LSSGDLL   41 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBCCEE--EEHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence            577889999999999999999877554  4444443

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=3.5e-07  Score=55.94  Aligned_cols=28  Identities=36%  Similarity=0.617  Sum_probs=23.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccEE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATFL   72 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~~   72 (102)
                      .+.|+|||||||||+++.|+..++...+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i   31 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHL   31 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            4678899999999999999998876543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.24  E-value=3.4e-07  Score=55.19  Aligned_cols=26  Identities=19%  Similarity=0.102  Sum_probs=22.4

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +.++|+|++|||||||+..|+..+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            46889999999999999999887643

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=3.7e-07  Score=56.39  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.1

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ..++++|.|||||||+++.|+..+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999998654

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.21  E-value=8.6e-07  Score=56.34  Aligned_cols=55  Identities=16%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhCccEEEEccc
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTSATFLRVVGS   77 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i~~~   77 (102)
                      ..-+++.|=++.+++|.+.                 .+..++|+||+|+|||+|++.++.........+...
T Consensus         9 ~~~~~f~GR~~el~~l~~~-----------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~   63 (283)
T d2fnaa2           9 DNRKDFFDREKEIEKLKGL-----------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR   63 (283)
T ss_dssp             CSGGGSCCCHHHHHHHHHT-----------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             CChhhCCChHHHHHHHHhc-----------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEec
Confidence            3457777877777666431                 346899999999999999999988777665555443

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=4.5e-06  Score=52.17  Aligned_cols=62  Identities=21%  Similarity=0.327  Sum_probs=44.3

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh----------CccEEEEcc
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT----------SATFLRVVG   76 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~----------~~~~~~i~~   76 (102)
                      .+|.+.|-++.++++.+.+..             .....++|+||||+|||+++..+|...          +...+.++.
T Consensus        20 ~ld~~igRd~Ei~~l~~iL~r-------------~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~   86 (195)
T d1jbka_          20 KLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM   86 (195)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred             CCCCCcCcHHHHHHHHHHHhc-------------cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence            456777888777777666543             233478999999999999999998743          344666766


Q ss_pred             chhhh
Q psy16321         77 SELIQ   81 (102)
Q Consensus        77 ~~~~~   81 (102)
                      ..+..
T Consensus        87 ~~LiA   91 (195)
T d1jbka_          87 GALVA   91 (195)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            66553

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.19  E-value=1.8e-06  Score=57.49  Aligned_cols=63  Identities=24%  Similarity=0.396  Sum_probs=42.6

Q ss_pred             cccCChHHHHHHHHHHhhhhcCChHHHHhcC--CCCCceeEEECCCCCChhHHHHHHHhhh---CccEEEEccc
Q psy16321          9 KKRGSLDVQIQEIKESVELPLTHPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVANQT---SATFLRVVGS   77 (102)
Q Consensus         9 ~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i~~~~---~~~~~~i~~~   77 (102)
                      +.+.|.++.++.|.+.+....      ..+.  -.+...++++||+|+|||.+++.||..+   ......++..
T Consensus        23 ~~v~GQ~~ai~~v~~~i~~~~------~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~   90 (315)
T d1qvra3          23 KRVVGQDEAIRAVADAIRRAR------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   90 (315)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHG------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             CeEeCHHHHHHHHHHHHHHHh------cCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecc
Confidence            356788888888877764321      1111  1233367888999999999999999976   3446666543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=6.1e-07  Score=56.04  Aligned_cols=27  Identities=15%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +-.++|.||+||||||+++.|+..+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            447899999999999999999887643

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.17  E-value=4.6e-07  Score=54.88  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +++.|.|++||||||+++.|+..+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46788999999999999999987753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=9.6e-07  Score=54.37  Aligned_cols=25  Identities=32%  Similarity=0.626  Sum_probs=21.7

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +.+.|+||||||||||++.|+...+
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCC
Confidence            3588999999999999999987654

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.13  E-value=1.5e-06  Score=54.63  Aligned_cols=42  Identities=21%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhh----CccEEEEccchh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT----SATFLRVVGSEL   79 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~----~~~~~~i~~~~~   79 (102)
                      +.-..|.++.|.|.|||||||+++.|+..+    ......+.++.+
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            333678899999999999999999998654    334555655544

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=8e-07  Score=55.00  Aligned_cols=25  Identities=40%  Similarity=0.658  Sum_probs=21.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+.|+|||||||||+++.|+...+.
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCC
Confidence            4789999999999999999886543

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=9.3e-07  Score=55.57  Aligned_cols=27  Identities=26%  Similarity=0.378  Sum_probs=23.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +|..+.|+||||+|||||.+.|....+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            477899999999999999999887654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.11  E-value=7.5e-07  Score=56.97  Aligned_cols=29  Identities=24%  Similarity=0.235  Sum_probs=24.8

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +++..+|+|+||+|||||+++|.+.....
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~  122 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLR  122 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhh
Confidence            57899999999999999999998765443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=7.7e-06  Score=53.39  Aligned_cols=73  Identities=21%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh----------CccEEEEcc
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT----------SATFLRVVG   76 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~----------~~~~~~i~~   76 (102)
                      .+|.+.|-++.++++.+.+..             .....++|+||||+|||+++..++...          ......++.
T Consensus        16 ~ld~~igRd~Ei~~l~~iL~r-------------~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~   82 (268)
T d1r6bx2          16 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI   82 (268)
T ss_dssp             CSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred             CCCcccChHHHHHHHHHHHhc-------------CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee
Confidence            356778888877777766543             233578999999999999999999742          223556665


Q ss_pred             chhhh--hccCchHHHHH
Q psy16321         77 SELIQ--KYLGDGPKLVR   92 (102)
Q Consensus        77 ~~~~~--~~~~~~~~~~~   92 (102)
                      ..+..  ++.++-+.+..
T Consensus        83 ~~liag~~~~g~~e~r~~  100 (268)
T d1r6bx2          83 GSLLAGTKYRGDFEKRFK  100 (268)
T ss_dssp             C---CCCCCSSCHHHHHH
T ss_pred             chHhccCccchhHHHHHH
Confidence            55553  44555555443

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=8e-07  Score=54.35  Aligned_cols=28  Identities=29%  Similarity=0.383  Sum_probs=25.1

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++++|+.+.|.||||+|||+|+..++..
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999888764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.2e-06  Score=52.64  Aligned_cols=24  Identities=21%  Similarity=0.516  Sum_probs=21.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.+.|+||||+||+||++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999988654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.96  E-value=2.5e-06  Score=53.62  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +++|.||+|||||||++.|...+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            57899999999999999998644

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=2.7e-06  Score=55.42  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=20.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...+|+|||||||||++.||.-.+
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            378899999999999999997644

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.6e-06  Score=54.26  Aligned_cols=27  Identities=30%  Similarity=0.404  Sum_probs=24.2

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++++|+.+.|.|||||||||++..++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999999987764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=6.5e-06  Score=54.73  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=23.8

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+-+++|.|++||||||+++.|..++.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            355799999999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.91  E-value=2.7e-06  Score=56.88  Aligned_cols=30  Identities=30%  Similarity=0.395  Sum_probs=26.1

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ..+..+++.||.||||||++++|++..++.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence            345679999999999999999999988764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3.5e-06  Score=53.02  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             hcCChHHHHhc--CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         28 PLTHPEYYEEM--GIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        28 ~~~~~~~~~~~--~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      +-.-+.+..-+  ++++|..+.|.||||||||+++..++.
T Consensus        20 ~TGi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          20 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             cCCCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34444444444  489999999999999999999988874

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=3.3e-06  Score=56.81  Aligned_cols=27  Identities=26%  Similarity=0.471  Sum_probs=22.3

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+..+...+|+||||||||+++.||+=
T Consensus        21 ~f~~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          21 GFGESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             ECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             eCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            344456789999999999999999963

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.89  E-value=3.5e-06  Score=49.54  Aligned_cols=22  Identities=18%  Similarity=0.286  Sum_probs=19.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999874

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=7e-07  Score=54.11  Aligned_cols=24  Identities=25%  Similarity=0.232  Sum_probs=21.0

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...+|+|||||||||++.+|.-.+
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            367889999999999999998665

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=6.9e-07  Score=57.32  Aligned_cols=33  Identities=21%  Similarity=0.342  Sum_probs=22.2

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      .++..+|+|+||+|||||+++|.+......+.+
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v  128 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI  128 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence            477889999999999999999998654443333

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.88  E-value=4.8e-06  Score=52.48  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=21.7

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+.+++++||+|+||||.+--||..+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999877777654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=4.6e-06  Score=48.89  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++++|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.85  E-value=1.5e-05  Score=54.51  Aligned_cols=49  Identities=18%  Similarity=0.310  Sum_probs=37.3

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+++++|-...+.+.+++...              .+...+++.||.||||||++.++....+
T Consensus       135 ~~l~~LG~~~~~~~~l~~l~~--------------~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         135 LDLHSLGMTAHNHDNFRRLIK--------------RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHT--------------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhhhhcccHHHHHHHHHHHh--------------hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            456777777777776665442              3456788999999999999999988764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=4.3e-06  Score=50.26  Aligned_cols=22  Identities=27%  Similarity=0.558  Sum_probs=19.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.|.+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~   23 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK   23 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.84  E-value=6.2e-06  Score=52.18  Aligned_cols=27  Identities=33%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++.+++++||+|+||||.+--||..+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            356678999999999999876666544

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.84  E-value=4.4e-06  Score=52.15  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             hhcCChHHHHhcC--CCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         27 LPLTHPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        27 ~~~~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+-..+.+-.-++  +++|+.+.|.||||+|||+++..++-
T Consensus        16 i~TG~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          16 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             ECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ecCCCHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            3444555555454  88999999999999999999988875

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.84  E-value=2.7e-05  Score=47.02  Aligned_cols=32  Identities=25%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      +....++.+++|.|+=|+||||++|.++..+.
T Consensus        27 ~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             HHCCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             hccCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            33456888999999999999999999998764

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.84  E-value=3.8e-06  Score=51.51  Aligned_cols=30  Identities=23%  Similarity=0.331  Sum_probs=25.3

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ..+-.++|-|+.||||||+++.|+..++..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~   36 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDI   36 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGTTTE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            345689999999999999999999877543

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.84  E-value=3.5e-06  Score=51.74  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=20.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||+++|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            5999999999999999999874

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.83  E-value=5e-06  Score=49.10  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=5.4e-06  Score=51.01  Aligned_cols=22  Identities=32%  Similarity=0.602  Sum_probs=20.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++++|||||++.|.+.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999875

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.82  E-value=3.4e-06  Score=53.23  Aligned_cols=27  Identities=37%  Similarity=0.516  Sum_probs=23.9

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++++|+.+.|.||||||||||+-.++-
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            488999999999999999999876654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=7.7e-06  Score=51.67  Aligned_cols=27  Identities=33%  Similarity=0.433  Sum_probs=21.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+.+++|+||+|+||||.+--||..+
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999877777654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.81  E-value=3.7e-06  Score=50.83  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++++|||||+++|.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.81  E-value=4e-06  Score=52.85  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=25.0

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ++++..++|.||||+|||+++..++...
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999998777653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.79  E-value=6.5e-06  Score=51.84  Aligned_cols=23  Identities=43%  Similarity=0.742  Sum_probs=21.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+.|+||+|||||.|+++++...
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~   60 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEA   60 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHh
Confidence            48899999999999999999865

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.78  E-value=9.2e-06  Score=51.12  Aligned_cols=27  Identities=33%  Similarity=0.254  Sum_probs=21.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+.+++|+||+|+||||.+--||..+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            345678899999999999887777654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=8.1e-06  Score=50.73  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .|+.++|-|+.||||||+++.|+..+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            37789999999999999999999865

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=7.9e-06  Score=50.50  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +.++|+|++++|||||++.+.+-
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999873

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.76  E-value=3.4e-06  Score=51.31  Aligned_cols=22  Identities=36%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -++|+|++++|||||+++|.+.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            4799999999999999999763

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.73  E-value=5.1e-06  Score=49.78  Aligned_cols=25  Identities=20%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ..-.++|+|++|+|||||++.+.+-
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3446899999999999999999874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=8.4e-06  Score=49.85  Aligned_cols=27  Identities=22%  Similarity=0.263  Sum_probs=21.7

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      +-+++|.|++||||||+++.|.. ....
T Consensus         3 p~IIgitG~~gSGKstva~~l~~-~g~~   29 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS-WGYP   29 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH-TTCC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-CCCe
Confidence            44788999999999999999864 4433

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=3e-05  Score=50.99  Aligned_cols=26  Identities=27%  Similarity=0.499  Sum_probs=21.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+-+++|.|++|||||||++.|...+
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHH
Confidence            35578999999999999998886543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8.4e-06  Score=48.26  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++++|||||+++|.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=8.2e-06  Score=54.60  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=22.7

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..-.++|.||||+|||||+..++..+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            45679999999999999999998754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.71  E-value=1e-05  Score=51.06  Aligned_cols=27  Identities=37%  Similarity=0.396  Sum_probs=17.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+.+++|+||+|+||||.+--||..+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999877777654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.71  E-value=8.2e-06  Score=48.60  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999999884

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.71  E-value=7.1e-06  Score=50.96  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=22.8

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ++++|+.+.|.|+||+|||+|+..++
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            48899999999999999999986544

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.3e-05  Score=50.20  Aligned_cols=27  Identities=15%  Similarity=0.213  Sum_probs=23.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .|..++|.|+.||||||+++.|+..+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            577889999999999999999988653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.69  E-value=1.1e-05  Score=48.69  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|.+|+|||||++.|.+.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6999999999999999999975

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.7e-05  Score=49.54  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +..++|.||+|+||||+++.++..+
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhc
Confidence            4469999999999999999999865

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=1.2e-05  Score=48.34  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|.+++|||||+++|.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=7.5e-06  Score=51.39  Aligned_cols=27  Identities=15%  Similarity=0.213  Sum_probs=23.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .+.++|-|+-||||||+++.|+..+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999999987653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.65  E-value=8.7e-06  Score=53.65  Aligned_cols=25  Identities=12%  Similarity=0.220  Sum_probs=19.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      +++|.|+|||||||++++|...+..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~   30 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRR   30 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh
Confidence            7999999999999999999887643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.63  E-value=1.2e-05  Score=48.08  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=20.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++|+|.+|||||||++.+.+.
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999875

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=2.2e-05  Score=47.42  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .+=.++|+|.+++|||||+++|.+.
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3446899999999999999999874

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.62  E-value=1.9e-05  Score=48.55  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=21.0

Q ss_pred             CCceeEEECCCCCChhHHHHHHHh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+..++|.|+||+||||++-.+..
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            478899999999999999887665

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=3.3e-05  Score=48.33  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=26.2

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      .|..++|-|+-||||||+++.|+..+....
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~~   31 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPNC   31 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTSE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhCC
Confidence            578899999999999999999998876543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.61  E-value=7.5e-06  Score=49.55  Aligned_cols=21  Identities=38%  Similarity=0.480  Sum_probs=19.5

Q ss_pred             eEEECCCCCChhHHHHHHHhh
Q psy16321         46 VILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++|+|.+++|||||+++|.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999874

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=2.2e-05  Score=50.18  Aligned_cols=24  Identities=25%  Similarity=0.321  Sum_probs=20.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .+.++|.|||.+||||++|.++-.
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHHH
Confidence            467889999999999999998753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.60  E-value=1.9e-05  Score=52.67  Aligned_cols=26  Identities=27%  Similarity=0.337  Sum_probs=22.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..-.++|.||||+|||||+..+...+
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999998754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.58  E-value=1.9e-05  Score=48.99  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=21.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCccE
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSATF   71 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~~   71 (102)
                      .++|+|+.||||||+++.+.. .....
T Consensus         4 iIgITG~igSGKStv~~~l~~-~G~~v   29 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD-LGVPL   29 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCeE
Confidence            688999999999999998863 44443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.58  E-value=1.8e-05  Score=48.65  Aligned_cols=24  Identities=38%  Similarity=0.441  Sum_probs=21.0

Q ss_pred             CCceeEEECCCCCChhHHHHHHHh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+..++|.||||+||||++-.+..
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999999977764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.56  E-value=2.2e-05  Score=46.74  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=2.4e-05  Score=48.67  Aligned_cols=25  Identities=36%  Similarity=0.422  Sum_probs=20.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      .++|+|++||||||+++.+.. ....
T Consensus         5 iIgitG~igSGKStv~~~l~~-~G~~   29 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD-LGIN   29 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCc
Confidence            688999999999999998874 3443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.54  E-value=2.9e-05  Score=49.86  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=24.3

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++.+|+.++|.|+||+|||+++..++-
T Consensus        31 G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          31 GARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             SBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            588999999999999999999887774

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=6.4e-06  Score=48.74  Aligned_cols=22  Identities=27%  Similarity=0.584  Sum_probs=20.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|.+++|||||+++|.|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999985

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.53  E-value=8.4e-05  Score=48.15  Aligned_cols=47  Identities=15%  Similarity=0.193  Sum_probs=32.7

Q ss_pred             ccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         10 KRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        10 ~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++.|-+..++.|.+.+..          ..-.....++|+|+.|.||||||+.+...
T Consensus        21 ~~~gR~~~~~~i~~~L~~----------~~~~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDE----------MCDLDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHH----------HTTSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHh----------ccCCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            345666666666655421          12134568999999999999999998764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.52  E-value=7e-06  Score=49.31  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++|+|++++|||||+++|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            446999999999999999999774

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=3.2e-05  Score=46.34  Aligned_cols=21  Identities=43%  Similarity=0.608  Sum_probs=18.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+.+
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            378999999999999999875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.49  E-value=3.1e-05  Score=46.35  Aligned_cols=22  Identities=23%  Similarity=0.379  Sum_probs=19.3

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+-
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            3789999999999999988763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.3e-05  Score=46.41  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.0

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999987753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.48  E-value=6.9e-05  Score=51.08  Aligned_cols=72  Identities=21%  Similarity=0.338  Sum_probs=42.5

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHHHHHHhhh----------CccEEEEcc
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT----------SATFLRVVG   76 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~----------~~~~~~i~~   76 (102)
                      .+|.+.|-+..+..+.+.+..             ......+|+||||+|||+++..+|...          +...+.++.
T Consensus        20 ~ld~~~gr~~ei~~~~~~L~r-------------~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~   86 (387)
T d1qvra2          20 KLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM   86 (387)
T ss_dssp             CSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred             CCCCCcCcHHHHHHHHHHHhc-------------CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeH
Confidence            356778888777777766543             233467899999999999998877632          223556666


Q ss_pred             chhhh--hccCchHHHH
Q psy16321         77 SELIQ--KYLGDGPKLV   91 (102)
Q Consensus        77 ~~~~~--~~~~~~~~~~   91 (102)
                      ..+..  .+.++-+.+.
T Consensus        87 ~~l~ag~~~~g~~e~r~  103 (387)
T d1qvra2          87 GSLLAGAKYRGEFEERL  103 (387)
T ss_dssp             -----------CHHHHH
T ss_pred             hhhhcccCcchhHHHHH
Confidence            55543  3344444443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.46  E-value=4e-05  Score=47.07  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=20.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhC
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .|+|.|+-||||||+++.|+..+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478899999999999999998653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=3.7e-05  Score=45.75  Aligned_cols=21  Identities=14%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988775

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.45  E-value=3.4e-05  Score=47.03  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             CCceeEEECCCCCChhHHHHHHHh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+..++|.|+||+||||++-.+..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999998866654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.9e-05  Score=46.16  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=18.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+.+
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998866

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.45  E-value=4.1e-05  Score=48.19  Aligned_cols=26  Identities=31%  Similarity=0.312  Sum_probs=22.1

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      ..++|+|+.||||||+++.|+..+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~   27 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSA   27 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            46899999999999999999875543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.7e-05  Score=47.41  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=24.6

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ++.++|-|+-||||||+++.|+..+...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            5789999999999999999999877543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=3.5e-05  Score=45.93  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999988763

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.43  E-value=2.3e-05  Score=46.94  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|++|+|||||++.+.+.
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999998764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.43  E-value=3.3e-05  Score=49.68  Aligned_cols=24  Identities=17%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++|+|.+|+|||||+++|.|.
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            346899999999999999999985

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.42  E-value=4.6e-05  Score=48.33  Aligned_cols=24  Identities=25%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .+.++|.|||.+||||++|.++-.
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhHHH
Confidence            357899999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4e-05  Score=46.45  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|++|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            378999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.9e-05  Score=45.24  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=19.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|++|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.40  E-value=4.1e-05  Score=46.39  Aligned_cols=22  Identities=27%  Similarity=0.442  Sum_probs=20.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|.+.+|||||+++|.+.
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEEeCCCCcHHHHHHHHHHh
Confidence            5899999999999999999864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=3.4e-05  Score=49.33  Aligned_cols=26  Identities=31%  Similarity=0.396  Sum_probs=22.3

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      +.++..++|+|++|+|||||+-.++-
T Consensus        26 ~~pg~~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          26 MVAGTVGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            34688999999999999999987765

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.38  E-value=5.8e-05  Score=47.28  Aligned_cols=32  Identities=19%  Similarity=0.406  Sum_probs=27.8

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      ++++...++|+||+++|||+++.+|+..+...
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~   80 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA   80 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCE
Confidence            46777889999999999999999999988643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.4e-05  Score=45.70  Aligned_cols=21  Identities=33%  Similarity=0.626  Sum_probs=19.1

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|++|+|||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999886

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=5.3e-05  Score=45.22  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=18.6

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|.+|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999988776

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.7e-05  Score=45.56  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|.+|+|||||++.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999998765

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=5.7e-05  Score=45.70  Aligned_cols=21  Identities=43%  Similarity=0.618  Sum_probs=18.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|.+|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998876

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.8e-05  Score=44.94  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=18.7

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|++|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999988876

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=4.9e-05  Score=49.28  Aligned_cols=29  Identities=34%  Similarity=0.528  Sum_probs=24.6

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +++.+..+.|+||||+||||++-.++...
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence            36788999999999999999987777654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=5.1e-05  Score=45.12  Aligned_cols=22  Identities=27%  Similarity=0.505  Sum_probs=19.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988763

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.33  E-value=6.8e-05  Score=44.40  Aligned_cols=20  Identities=30%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             eEEECCCCCChhHHHHHHHh
Q psy16321         46 VILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++++|++|+|||||++.+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.5e-05  Score=44.90  Aligned_cols=21  Identities=43%  Similarity=0.781  Sum_probs=19.2

Q ss_pred             eEEECCCCCChhHHHHHHHhh
Q psy16321         46 VILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++++|++|+|||||++.+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            789999999999999998874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.6e-05  Score=44.99  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ..++|+|++|+|||||++.+.+
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3588999999999999999775

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.5e-05  Score=44.59  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||+|++.+..
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998886

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=7.4e-05  Score=44.93  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=19.2

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+.+
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=7.8e-05  Score=44.39  Aligned_cols=21  Identities=33%  Similarity=0.379  Sum_probs=18.7

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|.+|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=6.5e-05  Score=44.52  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=18.9

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|.+|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999876

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=8.5e-05  Score=44.21  Aligned_cols=21  Identities=29%  Similarity=0.416  Sum_probs=18.9

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|.+|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=8.8e-05  Score=44.43  Aligned_cols=20  Identities=40%  Similarity=0.576  Sum_probs=18.0

Q ss_pred             eEEECCCCCChhHHHHHHHh
Q psy16321         46 VILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++++|++|+|||||++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=8.8e-05  Score=44.25  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998885

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=7.7e-05  Score=44.65  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=18.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|.+|+|||||++.+.+
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998875

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=8.6e-05  Score=44.60  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788999999999999888764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.0001  Score=43.93  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.6

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=8.9e-05  Score=44.46  Aligned_cols=21  Identities=24%  Similarity=0.428  Sum_probs=18.9

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|.+|+|||||++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988775

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=8.6e-05  Score=45.37  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=18.4

Q ss_pred             eEEECCCCCChhHHHHHHHh
Q psy16321         46 VILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~   65 (102)
                      ++|+|++|+|||||++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.0001  Score=44.23  Aligned_cols=22  Identities=41%  Similarity=0.593  Sum_probs=19.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|.+|+|||||++.+.+.
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998764

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.00018  Score=44.54  Aligned_cols=35  Identities=6%  Similarity=0.049  Sum_probs=27.3

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhC------ccEEEEcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTS------ATFLRVVG   76 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~------~~~~~i~~   76 (102)
                      .+..+++.||+|+|||++++.++....      ++...+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~   54 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDP   54 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeC
Confidence            456899999999999999999998652      34555543

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00012  Score=44.29  Aligned_cols=21  Identities=24%  Similarity=0.320  Sum_probs=19.0

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|.+|+|||||++.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999988776

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.18  E-value=0.00012  Score=43.60  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.6

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998776

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.18  E-value=4.5e-05  Score=45.72  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=20.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      -.++++|++|+|||||++.+..-.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            458899999999999999987643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.17  E-value=0.00027  Score=45.11  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ....++|.||+||||++++++|....
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            34579999999999999999998654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=0.00013  Score=43.59  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.7

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+.+
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            477899999999999998876

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.16  E-value=5.6e-05  Score=45.59  Aligned_cols=26  Identities=19%  Similarity=0.307  Sum_probs=21.2

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .+.-.++++|++|+|||||++.+.+.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            33446889999999999999988653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=6.5e-05  Score=45.05  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=8.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|.+|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987775

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.15  E-value=0.00013  Score=43.49  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=18.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|.+|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.00022  Score=46.27  Aligned_cols=29  Identities=28%  Similarity=0.527  Sum_probs=24.5

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +++.+..+.|.||+|+||||++-.++...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            47889999999999999999986666543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00015  Score=43.14  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|.+|+|||+|++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999988753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00016  Score=47.42  Aligned_cols=30  Identities=27%  Similarity=0.437  Sum_probs=26.4

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.+..|+..+|+|++|+|||+|+..|+.-.
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            357789999999999999999999998744

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.00012  Score=49.97  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +-.++|+|.+|+|||||+++|.|.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999999873

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.10  E-value=0.00032  Score=45.37  Aligned_cols=29  Identities=34%  Similarity=0.571  Sum_probs=25.3

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .+....+.|+||+++|||+++.+|+.++.
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            45566789999999999999999999883

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=97.08  E-value=0.00011  Score=47.19  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=16.3

Q ss_pred             ceeEEECCCCCChhHHH-HHHHh
Q psy16321         44 KGVILYGPPGTGKTLLA-KAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~-~~i~~   65 (102)
                      ..++|.|++||||||++ ..++.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHH
Confidence            45889999999999854 43333

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.08  E-value=0.00013  Score=47.40  Aligned_cols=29  Identities=38%  Similarity=0.508  Sum_probs=25.0

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ++.|.++-++||+|||||+++-.++....
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHH
Confidence            57788999999999999999988877553

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0002  Score=48.18  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=17.5

Q ss_pred             CceeEEECCCCCChhHHHHHH
Q psy16321         43 PKGVILYGPPGTGKTLLAKAV   63 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i   63 (102)
                      +...+|.||+||||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            568899999999999987443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=7.4e-05  Score=44.77  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=17.8

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|++|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00019  Score=43.49  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=18.5

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|.+|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999988765

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.99  E-value=0.00016  Score=46.96  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=14.9

Q ss_pred             CceeEEECCCCCChhHHH
Q psy16321         43 PKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~   60 (102)
                      ...++|.|++||||||++
T Consensus        24 ~g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SSCEEEEECTTSCHHHHH
T ss_pred             CCCEEEEecCCccHHHHH
Confidence            346889999999999854

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=43.54  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=18.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||+|++.+..-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999877653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00022  Score=43.12  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=18.0

Q ss_pred             eeEEECCCCCChhHHHHHHH
Q psy16321         45 GVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~   64 (102)
                      .++|+|.+|+|||||++.+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999884

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00022  Score=43.02  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=18.3

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++|.+|+|||+|++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0003  Score=42.39  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|++|+|||||++.+.+.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999988763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.84  E-value=0.00036  Score=43.70  Aligned_cols=22  Identities=27%  Similarity=0.289  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|.+.+|||||+++|.+.
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhh
Confidence            4999999999999999999875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.84  E-value=0.00031  Score=43.84  Aligned_cols=21  Identities=24%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             eeEEECCCCCChhHHHHHHHh
Q psy16321         45 GVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++|+|++|+|||||++.+..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999988754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0004  Score=43.54  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +++|.|.-|||||||++.+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            5788999999999999988764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.73  E-value=0.00038  Score=45.34  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      =.++|+|.|.+|||||++++.+.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC
Confidence            35999999999999999999974

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.71  E-value=0.00035  Score=45.69  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=19.1

Q ss_pred             eEEECCCCCChhHHHHHHHhh
Q psy16321         46 VILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        46 ~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      ++|+|.|.+|||||+++|.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00045  Score=46.60  Aligned_cols=23  Identities=35%  Similarity=0.745  Sum_probs=19.1

Q ss_pred             CceeEEECCCCCChhHHHHHHHh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .++++++|++|+|||++++.+.-
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            46799999999999999875553

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00057  Score=41.04  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.3

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|.+|+|||||++.+..-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988664

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.59  E-value=0.00068  Score=40.52  Aligned_cols=25  Identities=24%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .++|+|..|+|||||++.+.....+
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~   28 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEA   28 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCC
Confidence            4789999999999999987654433

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.55  E-value=0.00054  Score=38.72  Aligned_cols=21  Identities=33%  Similarity=0.314  Sum_probs=17.8

Q ss_pred             CCCCceeEEECCCCCChhHHH
Q psy16321         40 IKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      +..++.+.|..|+|+|||..+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            457889999999999999654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.42  E-value=0.00098  Score=42.91  Aligned_cols=22  Identities=27%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++|+|-|.+|||||+++|.+.
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            5899999999999999999974

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=96.39  E-value=0.00086  Score=43.35  Aligned_cols=24  Identities=42%  Similarity=0.603  Sum_probs=20.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.++|+|..|+|||||+.+|....
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHc
Confidence            478999999999999999996543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.33  E-value=0.00067  Score=44.11  Aligned_cols=25  Identities=16%  Similarity=0.131  Sum_probs=21.3

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      -+.++|+|..|+|||||+.+|.-..
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            3579999999999999999996543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.33  E-value=0.00094  Score=43.43  Aligned_cols=28  Identities=29%  Similarity=0.405  Sum_probs=24.2

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .+..|+.++|+|++|+|||+|+..++.-
T Consensus        64 pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          64 PYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence            4567999999999999999998888754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=96.25  E-value=0.00098  Score=44.16  Aligned_cols=19  Identities=37%  Similarity=0.620  Sum_probs=16.5

Q ss_pred             CCceeEEECCCCCChhHHH
Q psy16321         42 PPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~   60 (102)
                      .++..+++|.||+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4678899999999999974

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=96.23  E-value=0.0015  Score=43.49  Aligned_cols=25  Identities=28%  Similarity=0.405  Sum_probs=21.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .|.|-|+-|+||||+++.|+..+..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhcc
Confidence            4678899999999999999997754

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0012  Score=43.58  Aligned_cols=19  Identities=37%  Similarity=0.618  Sum_probs=16.6

Q ss_pred             CCceeEEECCCCCChhHHH
Q psy16321         42 PPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~   60 (102)
                      .++..+++|.||+|||||-
T Consensus        13 ~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          13 KGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TSCEEEEECSTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4678899999999999975

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00098  Score=43.24  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=21.7

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      =.+++++||.++|||||++.|.+..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            3478899999999999999999853

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.12  E-value=0.0035  Score=35.63  Aligned_cols=26  Identities=23%  Similarity=0.233  Sum_probs=19.3

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ..+..+|.+|.|+|||+++-.+.-..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~~~   32 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYAAQ   32 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHHTT
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHc
Confidence            34677889999999999875544333

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.05  E-value=0.0021  Score=38.97  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=19.9

Q ss_pred             eeEEECCCCCChhHHHHHHHhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .++++|-..+|||||+.+|.+.
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEEeccCCcHHHHHHHHHhh
Confidence            5799999999999999999873

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.02  E-value=0.0018  Score=42.94  Aligned_cols=19  Identities=37%  Similarity=0.623  Sum_probs=16.8

Q ss_pred             CCceeEEECCCCCChhHHH
Q psy16321         42 PPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~   60 (102)
                      .+...+++|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            4678889999999999986

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.01  E-value=0.0016  Score=42.09  Aligned_cols=23  Identities=13%  Similarity=0.442  Sum_probs=20.7

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++++|.-.+|||||+++|.|..
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999954

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=96.00  E-value=0.002  Score=42.77  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=21.8

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .|.|-|+=|+||||+++.|+..+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4778899999999999999987654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.92  E-value=0.0024  Score=41.64  Aligned_cols=28  Identities=25%  Similarity=0.237  Sum_probs=23.6

Q ss_pred             cCCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         38 MGIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        38 ~~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      +.+..|+.++|+|++|+|||+++..++.
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            4567899999999999999999876653

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.92  E-value=0.0023  Score=42.53  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=19.2

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhCc
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTSA   69 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~~   69 (102)
                      .|.|-|+=|+||||+++.|+..+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4778899999999999999876643

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.90  E-value=0.0028  Score=39.02  Aligned_cols=23  Identities=30%  Similarity=0.237  Sum_probs=20.0

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|-.++|||||+.+|...
T Consensus         4 ini~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           4 VNVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHH
Confidence            46899999999999999999643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.002  Score=41.49  Aligned_cols=23  Identities=13%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++++|.-.+|||||+++|.|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            47789999999999999999953

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.84  E-value=0.0041  Score=38.45  Aligned_cols=55  Identities=13%  Similarity=0.008  Sum_probs=35.0

Q ss_pred             ccccccccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHH
Q psy16321          4 SYKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLL   59 (102)
Q Consensus         4 ~~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl   59 (102)
                      ...+|++++-..+..+.|++. .+..-.+-....+. +-.|+-+++..|+|||||..
T Consensus         8 ~~~sF~~l~l~~~l~~~L~~~-g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a   63 (212)
T d1qdea_           8 VVYKFDDMELDENLLRGVFGY-GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGT   63 (212)
T ss_dssp             CCCCGGGGTCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHH
T ss_pred             cccChhhCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcCCCEEeecccccchhhh
Confidence            456899997666666767653 22222222222221 33688899999999999983

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0044  Score=39.29  Aligned_cols=27  Identities=30%  Similarity=0.354  Sum_probs=22.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.++.+.+.|.-|+||||++-.+|-.+
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHH
Confidence            356788999999999999887777754

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.75  E-value=0.0026  Score=41.26  Aligned_cols=27  Identities=22%  Similarity=0.239  Sum_probs=22.4

Q ss_pred             CCCCCceeEEECCCCCChhHHHHHHHh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      .+..|+.++|+|++|+|||+|+..++.
T Consensus        63 pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          63 PVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             CCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             cccCCceEeeccCCCCChHHHHHHHHh
Confidence            356799999999999999999876543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0039  Score=35.66  Aligned_cols=26  Identities=12%  Similarity=0.066  Sum_probs=21.9

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +|-.+.+.|-+|+||||++++|.--+
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            46678889999999999999996544

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.61  E-value=0.0054  Score=37.42  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=22.2

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .|.-.++++|...+|||||+..|.+.
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~   31 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGI   31 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSC
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhh
Confidence            44557999999999999999999863

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.0022  Score=39.07  Aligned_cols=50  Identities=20%  Similarity=0.239  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHHHHHHH
Q psy16321         15 DVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        15 ~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ....+.+++.+.+...++...+.+. +-.++.+++.-|.|+|||..+....
T Consensus        11 ~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~   61 (206)
T d1oywa2          11 SGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPA   61 (206)
T ss_dssp             HHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhh
Confidence            3344556665543222222222211 2357789999999999998764443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.55  E-value=0.0044  Score=39.68  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=22.5

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .+-.++++|-|.+|||||+++|.+..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            34458999999999999999999964

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0063  Score=37.36  Aligned_cols=49  Identities=16%  Similarity=0.174  Sum_probs=32.4

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHh--c-CCCCCceeEEECCCCCChhH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEE--M-GIKPPKGVILYGPPGTGKTL   58 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~--~-~i~~~~~~~l~Gp~GsGKSt   58 (102)
                      +|++++-..+..+.|.+.   .+.++.....  + .+-.|+-+++..|+|||||.
T Consensus         2 ~F~dl~L~~~l~~~l~~~---g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTl   53 (207)
T d1t6na_           2 GFRDFLLKPELLRAIVDC---GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTA   53 (207)
T ss_dssp             CSTTSCCCHHHHHHHHHT---TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHH
T ss_pred             CccccCcCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCeEEEecccccccc
Confidence            588887777777777653   2333332222  2 13458899999999999986

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.47  E-value=0.0015  Score=40.77  Aligned_cols=24  Identities=25%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             CCCceeEEECCCCCChhHHHHHHH
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      -.|+.++++.|.|+|||+.+-..+
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~   79 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMS   79 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHH
Confidence            368889999999999998654443

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0041  Score=38.06  Aligned_cols=52  Identities=17%  Similarity=0.119  Sum_probs=33.3

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhHH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLL   59 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKStl   59 (102)
                      +|++++-..+.++.|++. .+..-.+-....+. +-.|+-+.+..|+|+|||..
T Consensus         2 sF~~l~L~~~l~~~L~~~-g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTla   54 (206)
T d1s2ma1           2 TFEDFYLKRELLMGIFEA-GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAA   54 (206)
T ss_dssp             CGGGGCCCHHHHHHHHHT-TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHH
T ss_pred             ChHHcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhh
Confidence            689988778888888764 22222221211211 23478899999999999963

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=95.27  E-value=0.0068  Score=37.09  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=20.8

Q ss_pred             CceeEEECCCCCChhHHHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      .-.++++|-..+|||||+.+|.+.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHH
Confidence            346899999999999999999764

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0058  Score=37.93  Aligned_cols=52  Identities=17%  Similarity=0.176  Sum_probs=34.1

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcC---CCCCceeEEECCCCCChhHH
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG---IKPPKGVILYGPPGTGKTLL   59 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~---i~~~~~~~l~Gp~GsGKStl   59 (102)
                      ..+|++++-....++.|.+. .  +..+.......   +-.|+.+++..|+|||||..
T Consensus        11 i~sF~~l~L~~~l~~~L~~~-g--~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTla   65 (218)
T d2g9na1          11 VDSFDDMNLSESLLRGIYAY-G--FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT   65 (218)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-T--CCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHH
T ss_pred             cCCHHHCCCCHHHHHHHHHC-C--CCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhh
Confidence            46899998777777777543 2  33222222211   23578899999999999973

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=95.15  E-value=0.0064  Score=38.61  Aligned_cols=19  Identities=32%  Similarity=0.427  Sum_probs=16.8

Q ss_pred             CCCCceeEEECCCCCChhH
Q psy16321         40 IKPPKGVILYGPPGTGKTL   58 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKSt   58 (102)
                      +.+++.+++.+|.|||||+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTT
T ss_pred             hhcCCcEEEEECCCCCHHH
Confidence            4578899999999999996

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=95.13  E-value=0.0081  Score=43.35  Aligned_cols=27  Identities=30%  Similarity=0.409  Sum_probs=23.2

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...+.+++.|.||||||+-.|.|...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999887754

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.12  E-value=0.0067  Score=36.42  Aligned_cols=22  Identities=36%  Similarity=0.597  Sum_probs=16.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      +.+++.+|.|+|||.++-.++.
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~   45 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAE   45 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEeCCCCcHHHHHHHHHH
Confidence            3577889999999986555543

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.09  E-value=0.0029  Score=38.59  Aligned_cols=50  Identities=20%  Similarity=0.135  Sum_probs=32.6

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcC---CCCCceeEEECCCCCChhHH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG---IKPPKGVILYGPPGTGKTLL   59 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~---i~~~~~~~l~Gp~GsGKStl   59 (102)
                      +|++++-....++.|++.   .+..+.......   +-.|+.+.+..|+|||||..
T Consensus         2 ~F~~l~L~~~l~~~l~~~---g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTla   54 (209)
T d1q0ua_           2 QFTRFPFQPFIIEAIKTL---RFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHA   54 (209)
T ss_dssp             CGGGSCCCHHHHHHHHHT---TCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHH
T ss_pred             ccccCCcCHHHHHHHHHC---CCCCCCHHHHHHHHHHHCCCCeEeeccccccccee
Confidence            688887777777777652   233332222211   23478899999999999973

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.01  Score=36.97  Aligned_cols=53  Identities=19%  Similarity=0.161  Sum_probs=34.3

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcC-CCCCceeEEECCCCCChhH
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTL   58 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~-i~~~~~~~l~Gp~GsGKSt   58 (102)
                      ..+|++++-....++.|++. .+..-.+-....+. +-.|+.+++..|+|||||.
T Consensus        16 ~~sF~~l~L~~~l~~~L~~~-g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTl   69 (222)
T d2j0sa1          16 TPTFDTMGLREDLLRGIYAY-GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTA   69 (222)
T ss_dssp             CCSGGGGCCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHH
T ss_pred             CCCHHHCCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhh
Confidence            45899998777777777764 22222221111211 2358899999999999997

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.03  E-value=0.0088  Score=43.36  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=22.9

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...+.+++.|.||||||.-.+.|...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            456799999999999999888887754

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.92  E-value=0.0033  Score=38.21  Aligned_cols=20  Identities=45%  Similarity=0.559  Sum_probs=16.8

Q ss_pred             CCCceeEEECCCCCChhHHH
Q psy16321         41 KPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~   60 (102)
                      ..++.+++..|+|+|||+.+
T Consensus        38 ~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHH
Confidence            35778899999999999864

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.86  E-value=0.0086  Score=36.67  Aligned_cols=58  Identities=12%  Similarity=0.144  Sum_probs=33.6

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcC--CCCCceeEEECCCCCChhHHHHHH
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG--IKPPKGVILYGPPGTGKTLLAKAV   63 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~--i~~~~~~~l~Gp~GsGKStl~~~i   63 (102)
                      +-+|++++-..+.++.|++. .+..-.+-....+.  +.....+++..|+|+|||..+-..
T Consensus         3 ~msf~~l~l~~~l~~~l~~~-g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~   62 (208)
T d1hv8a1           3 YMNFNELNLSDNILNAIRNK-GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIP   62 (208)
T ss_dssp             CCCGGGSSCCHHHHHHHHHH-TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHH
T ss_pred             ccCHHHcCCCHHHHHHHHHC-CCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecc
Confidence            44899997667777776653 22111221212221  222347888899999999865433

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.84  E-value=0.011  Score=42.84  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...+.+++.|.||||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            356889999999999999888887754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=94.75  E-value=0.0096  Score=37.48  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=19.9

Q ss_pred             ceeEEECCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +.++|.|.-|+||||++-.|+..+
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~L   25 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGL   25 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHH
Confidence            468899999999999887777654

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0083  Score=36.77  Aligned_cols=50  Identities=16%  Similarity=0.127  Sum_probs=33.0

Q ss_pred             ccccccCChHHHHHHHHHHhhhhcCChHHHHh--c-CCCCCceeEEECCCCCChhH
Q psy16321          6 KALKKRGSLDVQIQEIKESVELPLTHPEYYEE--M-GIKPPKGVILYGPPGTGKTL   58 (102)
Q Consensus         6 ~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~--~-~i~~~~~~~l~Gp~GsGKSt   58 (102)
                      .+|++++-..+.++.|.+.   .+..+.....  + .+-.|+-+++..|+|||||.
T Consensus         3 ~~F~~l~L~~~l~~~l~~~---g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTl   55 (206)
T d1veca_           3 NEFEDYCLKRELLMGIFEM---GWEKPSPIQEESIPIALSGRDILARAKNGTGKSG   55 (206)
T ss_dssp             SSGGGSCCCHHHHHHHHTT---TCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHH
T ss_pred             CChhccCcCHHHHHHHHHC---CCCCCCHHHHHHHHHHHcCCCEEeeccCcccccc
Confidence            5799997777777767653   2333222222  1 12358899999999999996

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.58  E-value=0.012  Score=43.20  Aligned_cols=27  Identities=26%  Similarity=0.463  Sum_probs=22.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...+.+++.|.||||||.-.+.|...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999888777654

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=94.47  E-value=0.015  Score=42.19  Aligned_cols=27  Identities=30%  Similarity=0.411  Sum_probs=23.0

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...+.+++.|.||||||.-.+.+...+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457889999999999999888887754

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.017  Score=36.31  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=20.4

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      +..+++.+.|.-|+||||++-.||..+
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~l   44 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRL   44 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345677888999999999766666543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.014  Score=35.05  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=19.8

Q ss_pred             ceeEEECCC-CCChhHHHHHHHhhh
Q psy16321         44 KGVILYGPP-GTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~Gp~-GsGKStl~~~i~~~~   67 (102)
                      +.+.|.|-. |+||||+.-.|+..+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aL   26 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAA   26 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHH
Confidence            567889996 999999887777765

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=94.30  E-value=0.013  Score=42.86  Aligned_cols=27  Identities=26%  Similarity=0.346  Sum_probs=22.5

Q ss_pred             CCCceeEEECCCCCChhHHHHHHHhhh
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      ...+.+.|.|.||||||.-.+.|...+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            346789999999999999888777754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.09  E-value=0.01  Score=39.42  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=19.8

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      +.++|+|..++|||||+.+|..
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999999864

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.05  E-value=0.022  Score=34.64  Aligned_cols=25  Identities=24%  Similarity=0.335  Sum_probs=20.2

Q ss_pred             CceeEEE-CCCCCChhHHHHHHHhhh
Q psy16321         43 PKGVILY-GPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        43 ~~~~~l~-Gp~GsGKStl~~~i~~~~   67 (102)
                      ++++++. +..|+||||++-.||..+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~l   27 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVAL   27 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            4678888 778999999888887754

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=93.96  E-value=0.003  Score=39.79  Aligned_cols=60  Identities=13%  Similarity=0.145  Sum_probs=35.6

Q ss_pred             cccccccCChHHHHHHHHHHhhhhcCChHHHHhcC---CCCCceeEEECCCCCChhH--HHHHHHhhh
Q psy16321          5 YKALKKRGSLDVQIQEIKESVELPLTHPEYYEEMG---IKPPKGVILYGPPGTGKTL--LAKAVANQT   67 (102)
Q Consensus         5 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~---i~~~~~~~l~Gp~GsGKSt--l~~~i~~~~   67 (102)
                      ..+|++++-..+..+.|.+   ..+..+.......   +-.|+.+++..|+|+|||.  ++-+|..+.
T Consensus        20 ~~~F~~l~l~~~l~~~L~~---~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~   84 (238)
T d1wrba1          20 IENFDELKLDPTIRNNILL---ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV   84 (238)
T ss_dssp             CCSSGGGSCCCSTTTTTTT---TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cCCHHHCCCCHHHHHHHHH---CCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHH
Confidence            4688888654444443332   2233332222211   2358899999999999998  555665543

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.65  E-value=0.045  Score=33.18  Aligned_cols=32  Identities=38%  Similarity=0.366  Sum_probs=22.6

Q ss_pred             CceeEEECCCCCChhHHHHHHHhhhCccEEEE
Q psy16321         43 PKGVILYGPPGTGKTLLAKAVANQTSATFLRV   74 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~~~i~~~~~~~~~~i   74 (102)
                      +...++..|.|+|||.++-.++.........+
T Consensus        85 ~~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv  116 (206)
T d2fz4a1          85 DKRGCIVLPTGSGKTHVAMAAINELSTPTLIV  116 (206)
T ss_dssp             TSEEEEEESSSTTHHHHHHHHHHHSCSCEEEE
T ss_pred             CCCcEEEeCCCCCceehHHhHHHHhcCceeEE
Confidence            34566888999999998777776665544333

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=93.56  E-value=0.032  Score=34.63  Aligned_cols=23  Identities=17%  Similarity=0.289  Sum_probs=19.5

Q ss_pred             eeEEECCCCCChhHHHHHHHhhh
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~   67 (102)
                      .++++|-..+|||||+.+|....
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHc
Confidence            37899999999999999996543

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=93.30  E-value=0.038  Score=31.89  Aligned_cols=24  Identities=25%  Similarity=0.192  Sum_probs=18.9

Q ss_pred             CceeEEECCCCCChhH-HHHHHHhh
Q psy16321         43 PKGVILYGPPGTGKTL-LAKAVANQ   66 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKSt-l~~~i~~~   66 (102)
                      |..-+++||-.||||| |++.+-..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            4556889999999999 77776554

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.25  E-value=0.034  Score=33.75  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=18.8

Q ss_pred             ceeEEE-CCCCCChhHHHHHHHhhh
Q psy16321         44 KGVILY-GPPGTGKTLLAKAVANQT   67 (102)
Q Consensus        44 ~~~~l~-Gp~GsGKStl~~~i~~~~   67 (102)
                      +.+++. +..|+||||++-.+|..+
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~l   26 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVAL   26 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHH
Confidence            355666 889999999988887755

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.08  E-value=0.035  Score=33.53  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.1

Q ss_pred             eeEEECCCCCChhHHHHHHHhhhC
Q psy16321         45 GVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        45 ~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      .++++|++.||||..+..++...+
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~   24 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAP   24 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCS
T ss_pred             CEEEECCCCccHHHHHHHHHhcCC
Confidence            368999999999999999886543

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.86  E-value=0.078  Score=33.80  Aligned_cols=30  Identities=30%  Similarity=0.448  Sum_probs=21.8

Q ss_pred             HHhcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         35 YEEMGIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        35 ~~~~~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ..++.-......+|.|..|||||-++-..+
T Consensus        96 ~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~  125 (264)
T d1gm5a3          96 RNDMISEKPMNRLLQGDVGSGKTVVAQLAI  125 (264)
T ss_dssp             HHHHHSSSCCCCEEECCSSSSHHHHHHHHH
T ss_pred             HHHhhccCcceeeeeccccccccHHHHHHH
Confidence            344444556678999999999999765444

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.77  E-value=0.029  Score=34.58  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      -.++++|--++|||||+..|..
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHH
Confidence            3689999999999999988853

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=92.54  E-value=0.06  Score=33.73  Aligned_cols=28  Identities=29%  Similarity=0.287  Sum_probs=20.6

Q ss_pred             hcCCCCCceeEEECCCCCChhHHHHHHH
Q psy16321         37 EMGIKPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        37 ~~~i~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      ++.-+.....+|.|..|||||-++-..+
T Consensus        70 ~~~~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          70 DMCQPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             HHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             HHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence            3444556688999999999999764443

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.44  E-value=0.042  Score=34.79  Aligned_cols=22  Identities=23%  Similarity=0.516  Sum_probs=17.3

Q ss_pred             ceeEEECCCCCChhHHHHHHHh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVAN   65 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~   65 (102)
                      +.+++.|.-|+||||++--||.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~   24 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4577899999999996665554

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.29  E-value=0.063  Score=33.56  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=19.6

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      -.++++|-..+|||||+..|.-.
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            36899999999999999888643

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=91.14  E-value=0.084  Score=34.73  Aligned_cols=49  Identities=16%  Similarity=0.217  Sum_probs=26.6

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      +||.+-+.+..-+++-+.+..|     +..++--.....+.-+|+.|||||..+
T Consensus        49 ~FD~vf~~~~~q~~vy~~~~~p-----lv~~~l~G~n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          49 TFDRVFDMSCKQSDIFDFSIKP-----TVDDILNGYNGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             ECSEEECTTCCHHHHHHHHTHH-----HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred             ECCeEcCCCCCHHHHHHHHHHH-----HHHHhhccCceeEEecccCCCCcceee
Confidence            4555655554444544443332     222221122345777899999999654

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.069  Score=34.68  Aligned_cols=49  Identities=12%  Similarity=0.143  Sum_probs=27.7

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      +||.+-+.+..-+++-+.+..++     ..++--.....++-+|+.|||||..+
T Consensus        45 ~FD~vf~~~~~q~~vf~~~~~~l-----v~~~l~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          45 AFDRVFQSSTSQEQVYNDCAKKI-----VKDVLEGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             ECSEEECTTCCHHHHHHHHTHHH-----HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred             ECCEEECCCCCHHHHHHHHHHHH-----HHHHHcCCCcceeeecccCCCCceec
Confidence            35556555545555544443332     12211123456778899999999875

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.38  E-value=0.041  Score=34.55  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=19.9

Q ss_pred             CCCceeEEECCCCCChhHHHHHHH
Q psy16321         41 KPPKGVILYGPPGTGKTLLAKAVA   64 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKStl~~~i~   64 (102)
                      .+.-.++++|-..+|||||+..|.
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHH
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHH
Confidence            333358999999999999999884

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.17  E-value=0.1  Score=29.77  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=17.6

Q ss_pred             CceeEEECCCCCChhH-HHHHHHh
Q psy16321         43 PKGVILYGPPGTGKTL-LAKAVAN   65 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKSt-l~~~i~~   65 (102)
                      |..-+++||-.||||| |++.+..
T Consensus         2 G~L~li~GpMfsGKTt~Li~~~~~   25 (133)
T d1xbta1           2 GQIQVILGPMFSGKSTELMRRVRR   25 (133)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEEEecccCHHHHHHHHHHHH
Confidence            5677899999999999 4454444

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.11  E-value=0.092  Score=34.84  Aligned_cols=28  Identities=18%  Similarity=0.181  Sum_probs=19.4

Q ss_pred             CCCCCceeEEECCCCCChhHHH-HHHHhh
Q psy16321         39 GIKPPKGVILYGPPGTGKTLLA-KAVANQ   66 (102)
Q Consensus        39 ~i~~~~~~~l~Gp~GsGKStl~-~~i~~~   66 (102)
                      ..+....++|.+..|||||+.+ .-++.+
T Consensus        12 ~~p~~g~~lv~A~AGsGKT~~l~~r~~~l   40 (485)
T d1w36b1          12 RLPLQGERLIEASAGTGKTFTIAALYLRL   40 (485)
T ss_dssp             GCCCSSCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEEcCchHHHHHHHHHHHHH
Confidence            3455567888899999999854 334344

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=89.26  E-value=0.17  Score=29.92  Aligned_cols=27  Identities=33%  Similarity=0.395  Sum_probs=22.4

Q ss_pred             CCceeEEECCCCCChhHHHHHHHhhhCcc
Q psy16321         42 PPKGVILYGPPGTGKTLLAKAVANQTSAT   70 (102)
Q Consensus        42 ~~~~~~l~Gp~GsGKStl~~~i~~~~~~~   70 (102)
                      |++++++.|-+  ||||....|+..+...
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~~~   27 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILSQC   27 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHHhC
Confidence            46789999987  5999999999987653

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=88.85  E-value=0.14  Score=33.41  Aligned_cols=48  Identities=17%  Similarity=0.117  Sum_probs=27.0

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      +||.+-+.+..-+++-+.+. +     +..++--.....++-+|+.|||||..+
T Consensus        53 ~FD~vf~~~~~q~~vy~~v~-~-----~v~~~l~G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          53 KFDKIFDQQDTNVDVFKEVG-Q-----LVQSSLDGYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             EESEEECTTCCHHHHHHHHH-H-----HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred             ecCeEeCCCCCHHHHHHHhh-h-----hhcchhcccccceeeeeccCCcccccc
Confidence            46666665554455554432 2     112211122346777899999999765

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.72  E-value=0.084  Score=34.40  Aligned_cols=49  Identities=27%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             ccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHH
Q psy16321          8 LKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus         8 ~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      ||.+-+.+..-+++-+.+..|+-.. .+.+   .....+..+|..|||||..+
T Consensus        54 fD~Vf~~~~~q~~vy~~~~~plv~~-~~~~---G~n~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          54 VDKVFDDTVDNFTVYENTIKPLIID-LYEN---GCVCSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             CSEEECTTCCHHHHHHHHTHHHHHH-HHHH---CCEEEEEEECCTTSSHHHHH
T ss_pred             CCeecCCCCCHHHHHHHHHHHHHHH-HHhc---CCCeEEEeeeccccccceee
Confidence            5666665555555555444332111 1111   12345677899999999875

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.64  E-value=0.2  Score=28.80  Aligned_cols=25  Identities=20%  Similarity=0.266  Sum_probs=19.0

Q ss_pred             CCCceeEEECCCCCChhH-HHHHHHh
Q psy16321         41 KPPKGVILYGPPGTGKTL-LAKAVAN   65 (102)
Q Consensus        41 ~~~~~~~l~Gp~GsGKSt-l~~~i~~   65 (102)
                      +.|..-+++||-.||||| |++.+-.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHH
Confidence            357778899999999999 4455533

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=86.26  E-value=0.15  Score=33.35  Aligned_cols=49  Identities=22%  Similarity=0.293  Sum_probs=26.0

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHhcCCCCCceeEEECCCCCChhHHH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      +||.+-+.+..-+++-+.+..++-     .++--.....++.+|+.|||||..+
T Consensus        50 ~FD~vf~~~~~q~~vy~~~~~~lv-----~~~l~G~n~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          50 TFDMVFGASTKQIDVYRSVVCPIL-----DEVIMGYNCTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             ECSEEECTTCCHHHHHHHHHHHHH-----HHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred             ecCEEeCCCCCHHHHHHHHHHHhH-----HHHhccCCceEEeeeeccccceEEe
Confidence            355555554444444444333221     1111022345777899999999765

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=0.21  Score=33.22  Aligned_cols=23  Identities=30%  Similarity=0.244  Sum_probs=17.1

Q ss_pred             CCCceeEEEC--CCCCChhHHHHHH
Q psy16321         41 KPPKGVILYG--PPGTGKTLLAKAV   63 (102)
Q Consensus        41 ~~~~~~~l~G--p~GsGKStl~~~i   63 (102)
                      +.|+..-+.|  ||+||||.|+-+.
T Consensus        14 P~g~~~yvaaAFPSaCGKTnlAMl~   38 (363)
T d1khba1          14 PEGEKKYLAAAFPSACGKTNLAMMN   38 (363)
T ss_dssp             TTSCEEEEEEECCTTSCHHHHHTCC
T ss_pred             CCCCEEEEEEecCccccchhHHHhC
Confidence            4566666665  9999999998753

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=85.90  E-value=0.14  Score=33.76  Aligned_cols=48  Identities=17%  Similarity=0.169  Sum_probs=27.3

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHh-cCCCCCceeEEECCCCCChhHHH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEE-MGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~-~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      +||.+-+.+..-+++-+.+..++     ..+ +. .....++-+|+.|||||..+
T Consensus        83 ~FD~vf~~~~~Q~~Vy~~~~~pl-----v~~~l~-G~n~tifaYGqTGSGKTyTm  131 (362)
T d1v8ka_          83 CFDFAFDETASNEVVYRFTARPL-----VQTIFE-GGKATCFAYGQTGSGKTHTM  131 (362)
T ss_dssp             ECSEEECTTCCHHHHHHHTTHHH-----HHHHHT-TCEEEEEEEESTTSSHHHHH
T ss_pred             eCCeecCCCCCHHHHHHHHHHHH-----HHHHHh-ccCceEEeeccCCCCCceee
Confidence            35666665555555554443322     122 21 22345667799999999875

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=83.05  E-value=0.32  Score=31.98  Aligned_cols=47  Identities=15%  Similarity=0.200  Sum_probs=26.0

Q ss_pred             cccccCChHHHHHHHHHHhhhhcCChHHHHh-cCCCCCceeEEECCCCCChhHHH
Q psy16321          7 ALKKRGSLDVQIQEIKESVELPLTHPEYYEE-MGIKPPKGVILYGPPGTGKTLLA   60 (102)
Q Consensus         7 ~~~~i~g~~~~~~~i~~~~~~~~~~~~~~~~-~~i~~~~~~~l~Gp~GsGKStl~   60 (102)
                      +||.+-+.+..-+++-+.+     .+ +..+ +. .....++-+|+.|||||..+
T Consensus        45 ~FD~vf~~~~~q~~vy~~v-----~~-lv~~~l~-G~n~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          45 MYDRVFDGNATQDDVFEDT-----KY-LVQSAVD-GYNVCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             ECSEEECTTCCHHHHHHTT-----TH-HHHHHHT-TCEEEEEEECSTTSSHHHHH
T ss_pred             ECCeecCCCCCHHHHHHHH-----HH-HHHHHhc-CCceeeeccccCCCCccccc
Confidence            3566655544444444433     12 2222 22 22345677899999999874

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.93  E-value=0.38  Score=31.69  Aligned_cols=18  Identities=33%  Similarity=0.567  Sum_probs=14.1

Q ss_pred             CceeEEECCCCCChhHHH
Q psy16321         43 PKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~   60 (102)
                      ...++-+|+.|||||..+
T Consensus       125 n~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         125 NICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             EEEEEEECSTTSSHHHHH
T ss_pred             ceeEEeeccCCCccceEe
Confidence            345777899999999754

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.33  E-value=0.57  Score=29.58  Aligned_cols=23  Identities=26%  Similarity=0.424  Sum_probs=17.5

Q ss_pred             ceeEEECCCCCChhHHHHHHHhh
Q psy16321         44 KGVILYGPPGTGKTLLAKAVANQ   66 (102)
Q Consensus        44 ~~~~l~Gp~GsGKStl~~~i~~~   66 (102)
                      +..++.-|.|+|||.++-+++..
T Consensus       129 ~~~il~~pTGsGKT~i~~~i~~~  151 (282)
T d1rifa_         129 RRRILNLPTSAGRSLIQALLARY  151 (282)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCceeEEEcccCccHHHHHHHHH
Confidence            34566679999999888777753

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=81.30  E-value=0.41  Score=31.18  Aligned_cols=18  Identities=28%  Similarity=0.540  Sum_probs=15.1

Q ss_pred             CceeEEECCCCCChhHHH
Q psy16321         43 PKGVILYGPPGTGKTLLA   60 (102)
Q Consensus        43 ~~~~~l~Gp~GsGKStl~   60 (102)
                      ...++-+|+.|+|||..+
T Consensus        87 n~ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          87 NVCIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             CEEEEEECSTTSSHHHHH
T ss_pred             CceeeeeccCCCCCceee
Confidence            356778899999999876

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.24  E-value=0.64  Score=27.80  Aligned_cols=26  Identities=15%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             CCCCceeEEECCCCCChhHHHHHHHhhhC
Q psy16321         40 IKPPKGVILYGPPGTGKTLLAKAVANQTS   68 (102)
Q Consensus        40 i~~~~~~~l~Gp~GsGKStl~~~i~~~~~   68 (102)
                      ....+.+.|+||   ||+|+.+.|....+
T Consensus         6 ~~~~Rpivi~Gp---~K~ti~~~L~~~~p   31 (199)
T d1kjwa2           6 VHYARPIIILGP---TKDRANDDLLSEFP   31 (199)
T ss_dssp             CCSCCCEEEEST---THHHHHHHHHHHCT
T ss_pred             CCCCCCEEEECc---CHHHHHHHHHHhCc
Confidence            445678999998   49999999987644