Psyllid ID: psy16323

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MIAPFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQISFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYTTNSFAPMDRWTHPSKAATFLGLLDEDTDEEDL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHccccccccccccHHHHHHHHHHHHHHHcccHHccccccccccccccccHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEccHHHHHHHccccEEccEEEEEcccccEEEEEcccEEEccHHHccEEcEcccccccccEEEEEEEEcHcccccccccccccccccccccccHHHHHHccccccccHccc
Coil and Loop (DISEMBL)
miapfdkhvfteadylpstvterplepdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpssapdlpgpsstvlgsylgeaghqkspkglepkpaqISFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQlpqqayttnsfapmdpskddTVILLFIKTCIqlpqqayttnsfapmdrwthpskaatflglldedtdeedl
Flexible Loop (DISEMBL)
miapfdkhvfteadylpstvTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQISFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYTTNSFAPMDRWTHPSKAAtflglldedtdeedl
Low Complexity Region (SEG)
MIAPFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQISFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYTTNSFAPMDRWTHPSKAATFlglldedtdeedl
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************************************************************************************************************************************************************************************QISFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPM***KDDTVILLFIKTCIQLPQQAYTTNSFAPMDRWTHPSKAATFLGL**********
Disordered Region (DISOPRED)
**APF*********************************************************************************************************************************************************************************************************************************************************************************************************************************************HFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYTTNSFAPMDRWTHPSKAATFLGLLD********
Disordered Region (DISEMBL)
MIAPFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEA********LEPKPAQISFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYTTNSFAPMDRWTHPSKAATFLGLLDEDTDEEDL
Disordered Region (DISPRO)
*********************************************************************************************************************************************************************************************************************************************************************************************************************************SFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYTTNSFAPMDRWTHPSKAATFLGLLD********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIAPFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQISFVLNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYTTNSFAPMDRWTHPSKAATFLGLLDEDTDEEDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	448	2.2.26 [Sep-21-2011]
Q9GLP1	2258	Coagulation factor V OS=S	yes	N/A	0.631	0.125	0.311	2e-26
Q28107	2211	Coagulation factor V OS=B	yes	N/A	0.569	0.115	0.389	2e-19
P27393	1763	Collagen alpha-2(IV) chai	N/A	N/A	0.600	0.152	0.353	1e-16
Q6UXY8	1006	Transmembrane channel-lik	no	N/A	0.5	0.222	0.327	6e-16
Q06852	2313	Cell surface glycoprotein	yes	N/A	0.600	0.116	0.421	6e-13
P02462	1669	Collagen alpha-1(IV) chai	yes	N/A	0.564	0.151	0.294	2e-09
Q96P44	957	Collagen alpha-1(XXI) cha	no	N/A	0.604	0.283	0.278	5e-09
P02463	1669	Collagen alpha-1(IV) chai	yes	N/A	0.620	0.166	0.295	1e-07
O42854	1611	SH3 domain-containing pro	yes	N/A	0.305	0.085	0.468	2e-07
P18583	2426	Protein SON OS=Homo sapie	no	N/A	0.493	0.091	0.317	2e-07

>sp|Q9GLP1|FA5_PIG Coagulation factor V OS=Sus scrofa GN=F5 PE=2 SV=1

 Score =  120 bits (301), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 151/286 (52%), Gaps = 3/286 (1%)

Query: 20   VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
            +++  L PDL   + +PDL   + +PDL   + +PDL   + +PDL   + +PDL   + 
Sbjct: 1200 LSQTTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLSQTTLSPDLSHTTLSPDLGHTTL 1259

Query: 80   APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
            +PDL   + +PDL   + +PDL   + +PDL   + +PDL   + +PD    + +PDL  
Sbjct: 1260 SPDLSHTTLSPDLGHATLSPDLSHTTLSPDLGHTTLSPDLGHTTLSPDFSQTTLSPDLGH 1319

Query: 140  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
             + + D+   + +PDL   + +PDL   + +PDL   + +PDL   + +PDL   + +PD
Sbjct: 1320 TTLSSDVSHTTLSPDLSHTTLSPDLSHTTLSPDLGHTTLSPDLSQTTLSPDLGHMTLSPD 1379

Query: 200  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
            L   + +PDL   + +PDL   + +PDL   + +PDL   + + D    + +PDL   + 
Sbjct: 1380 LSHTTLSPDLGHTTLSPDLSHTTLSPDLGHMTLSPDLGQTTLSLDFGQTTLSPDLSHMTL 1439

Query: 260  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEA 305
            + +L   + +PDL   + +PDL     +PDL     T L S L E 
Sbjct: 1440 SSELSHETLSPDLSQVTLSPDLSEIPFSPDLW---QTTLSSDLNET 1482

Coagulation factor V is a cofactor that participates with factor Xa to activate prothrombin to thrombin.
Sus scrofa (taxid: 9823)

>sp|Q28107|FA5_BOVIN Coagulation factor V OS=Bos taurus GN=F5 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/259 (38%), Positives = 141/259 (54%), Gaps = 4/259 (1%)

Query: 25   LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDL 83
            LE ++   +++ DL  PS +PDL   + +PD PG  S +PDL   S +PDL   S +PDL
Sbjct: 1180 LELEVWQTATSLDLSQPSISPDLGQMALSPD-PGQESLSPDLGQTSLSPDLSQESLSPDL 1238

Query: 84   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSS 142
               + +PD    S +PDL   + +PD    S +PDL   + +PD PG  S +PDL   S 
Sbjct: 1239 GQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPD-PGQESLSPDLGQTSL 1297

Query: 143  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
            +PDL   S +PDL   + +PD    S +PDL   + +PD    S +PDL   S +PDL  
Sbjct: 1298 SPDLSQESLSPDLGQTALSPDPSQESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQ 1357

Query: 203  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
             S +PDL   + +PD    S +PDL   S +PDL   S +PDL   + +PDL   S +PD
Sbjct: 1358 ESLSPDLGQTALSPDPSQESLSPDLGQTSLSPDLGQESLSPDLGQTALSPDLSQESLSPD 1417

Query: 263  LPGPSSAPDLPGPSSAPDL 281
            L     +PDL   S +PDL
Sbjct: 1418 LGQTPLSPDLSLESLSPDL 1436

Central regulator of hemostasis. It serves as a critical cofactor for the prothrombinase activity of factor Xa that results in the activation of prothrombin to thrombin.

Bos taurus (taxid: 9913)

>sp|P27393|CO4A2_ASCSU Collagen alpha-2(IV) chain OS=Ascaris suum PE=2 SV=1

 Score = 88.6 bits (218), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 125/317 (39%), Gaps = 48/317 (15%)

Query: 17   PSTVTERPLEPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPDLPGPSSAPD 73
            P  + E+ L P LPG    P  PGP     AP  PG      LPG   AP LPG    P 
Sbjct: 1075 PGLMGEKGL-PGLPGKPGRPGAPGPKGLDGAPGFPGLKGEAGLPG---APGLPGQDGLPG 1130

Query: 74   LPG---PSSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSS--- 124
            LPG    S  P  PG    P LPG   AP + G    +  P LPG      LPG      
Sbjct: 1131 LPGQKGESGFPGQPGLVGPPGLPGKMGAPGIRGEKGDAGLPGLPGERGLDGLPGQKGEAG 1190

Query: 125  ---APDLPGP------SSAPDLPGPSSAPDLPGPSSAP---DLPGPSSAPDLPGPSSAPD 172
               AP LPGP      + AP  PG    P LPG    P    + G +  P  PG    P 
Sbjct: 1191 FPGAPGLPGPVGPKGSAGAPGFPGLKGEPGLPGLEGQPGPRGMKGEAGLPGAPGRDGLPG 1250

Query: 173  LPGPSSAPDLP--------------GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
            LPG      LP              G +  P LPG    P LPG    P  PG + A  +
Sbjct: 1251 LPGMKGEAGLPGLPGQPGKSITGPKGNAGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGI 1310

Query: 219  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GP 275
             G    P +PG    P L   S  P   G    P  PGP+  P LPG      LP   GP
Sbjct: 1311 KGEPGLPGIPGAKGEPGL---SGIPGKRGNDGIPGKPGPAGLPGLPGMKGESGLPGPQGP 1367

Query: 276  SSAPDLPGPSSAPDLPG 292
            +  P LPG    P LPG
Sbjct: 1368 AGLPGLPGLKGEPGLPG 1384

Collagen type IV is specific for basement membranes.

Ascaris suum (taxid: 6253)

>sp|Q6UXY8|TMC5_HUMAN Transmembrane channel-like protein 5 OS=Homo sapiens GN=TMC5 PE=2 SV=3

 Score = 85.9 bits (211), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 93/229 (40%), Gaps = 5/229 (2%)

Query: 27  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
           PD+PGP + PD PG  S P      + PD PG  + P+ P   S PD  G  S       
Sbjct: 36  PDVPGPLNNPDYPGTRSNPYSVASRTRPDYPGSLAEPNYPRSLSNPDYSGTRSNAYSAAS 95

Query: 87  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
            ++PD P     PD     S P     S  PD PG    PD  G SS+ +  G  + PD 
Sbjct: 96  RTSPDHPTSLPEPDYSEFQSHPYHRASSRQPDYPGSQRNPDFAGSSSSGNYAGSRTHPDH 155

Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSS 205
            G S  PD PG  S  D PGP +  +L  P S  +L   S   +        PD PG   
Sbjct: 156 FG-SLEPDYPGAQSNSDHPGPRA--NLNHPGSRKNLEHTSFRINPYADSLGKPDYPGADI 212

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
            P+ P     PD P      +LP     PD     +  D  G S  P +
Sbjct: 213 QPNSPPFFGEPDYPSAEDNQNLPSTWREPDYSDAENGHDY-GSSETPKM 260

May function as ion channels, transporters or modulators of such.

Homo sapiens (taxid: 9606)

>sp|Q06852|SLAP1_CLOTH Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=olpB PE=4 SV=2

 Score = 75.9 bits (185), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 136/323 (42%), Positives = 150/323 (46%), Gaps = 54/323 (16%)

Query: 28   DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGP 77
            D P PS  P   D P PS  P   D P PS  P+ P P+  P D P PS  P   D P P
Sbjct: 1386 DEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTP 1445

Query: 78   SSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPD 127
            S  P   D P PS  P+ P P+  P D P PS  P   D P PS  P   D P PS  P+
Sbjct: 1446 SDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPE 1505

Query: 128  LPGPSSAP-DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSA 179
             P P+  P D P PS  P   D P PS  P   D P PS  P+ P P+  P D P PS  
Sbjct: 1506 EPIPTDTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDE 1565

Query: 180  P---DLPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---D 226
            P   D P PS  P   D P PS  P   D P PS  P+ P P+  P D P PS  P   D
Sbjct: 1566 PTPSDEPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSD 1625

Query: 227  LPGPSSAP---DLPGPSSAP---DLPGPSSAPDLPGPSSAP-DLPGPSSAP---DLPGPS 276
             P PS  P   D P PS  P   D P PS  P+ P P+  P D P PS  P   D P PS
Sbjct: 1626 EPTPSDEPTPSDEPTPSDEPTPSDEPTPSETPEEPIPTDTPSDEPTPSDEPTPSDEPTPS 1685

Query: 277  SAP---DLPGPSSAPDLPGPSST 296
              P   D P PS  P+ P P+ T
Sbjct: 1686 DEPTPSDEPTPSETPEEPIPTDT 1708

Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119)

>sp|P02462|CO4A1_HUMAN Collagen alpha-1(IV) chain OS=Homo sapiens GN=COL4A1 PE=1 SV=3

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 111/302 (36%), Gaps = 49/302 (16%)

Query: 27   PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
            P + G S  P LPG   AP +PG P S  ++   G    P  PGP  AP LPG       
Sbjct: 851  PGITGQSGLPGLPGQQGAPGIPGFPGSKGEMGVMGTPGQPGSPGPVGAPGLPGEKGDHGF 910

Query: 84   PG---PSSAPDLPGPSSAPDLPGPSSAPDL------------------------------ 110
            PG   P   P L G      LPG   + D                               
Sbjct: 911  PGSSGPRGDPGLKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQIGPIGEKGSRGD 970

Query: 111  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
            PG    P   G +  P  PGP   P + G   AP LPGP  +      P  PG    P +
Sbjct: 971  PGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPGTPGEKGVPGI 1030

Query: 165  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
            PGP  +P LPG   A    G +  P +      P L G      + G   +P   G   +
Sbjct: 1031 PGPQGSPGLPGDKGAKGEKGQAGPPGI----GIPGLRGEKGDQGIAGFPGSPGEKGEKGS 1086

Query: 225  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
              +PG   +P L G   +   PG   +P LPG      LPG    P + G +  P  PGP
Sbjct: 1087 IGIPGMPGSPGLKGSPGSVGYPG---SPGLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGP 1143

Query: 285  SS 286
            + 
Sbjct: 1144 TG 1145

Arresten, comprising the C-terminal NC1 domain, inhibits angiogenesis and tumor formation. The C-terminal half is found to possess the anti-angiogenic activity. Specifically inhibits endothelial cell proliferation, migration and tube formation. Inhibits expression of hypoxia-inducible factor 1alpha and ERK1/2 and p38 MAPK activation. Ligand for alpha1/beta1 integrin.

Homo sapiens (taxid: 9606)

>sp|Q96P44|COLA1_HUMAN Collagen alpha-1(XXI) chain OS=Homo sapiens GN=COL21A1 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 99/291 (34%), Gaps = 20/291 (6%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P +P L GP   P LPG    P  PG    P   G +  P +PG       PG   A  L
Sbjct: 448 PGKPGLQGPKGDPGLPGNPGYPGQPGQDGKPGYQGIAGTPGVPGS------PGIQGARGL 501

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PG    P   G      LPG      +PG        G   +P   G   A    G +  
Sbjct: 502 PGYKGEPGRDGDKGDRGLPGFPGLHGMPGSKGEMGAKGDKGSPGFYGKKGAKGEKGNAGF 561

Query: 144 PDLPGPSSAPDLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
           P LPGP+  P   G      +P   G + +P  PG       PG    P  PG       
Sbjct: 562 PGLPGPAGEPGRHGKDGLMGSPGFKGEAGSPGAPGQDGTRGEPG---IPGFPGNRGLMGQ 618

Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
            G    P   G   AP +PG   +   PG    P   G    P + G      +PG S  
Sbjct: 619 KGEIGPPGQQGKKGAPGMPGLMGSNGSPGQPGTPGSKGSKGEPGIQG------MPGASGL 672

Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
              PG + +P  PG    P + G        G     +    GE G Q  P
Sbjct: 673 KGEPGATGSPGEPGYMGLPGIQGKKGDKGNQGEKG--IQGQKGENGRQGIP 721

Homo sapiens (taxid: 9606)

>sp|P02463|CO4A1_MOUSE Collagen alpha-1(IV) chain OS=Mus musculus GN=Col4a1 PE=2 SV=4

 Score = 58.5 bits (140), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 116/328 (35%), Gaps = 50/328 (15%)

Query: 27   PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDL 83
            P L G S  P LPG    P +PG P S  ++   G    P  PGP+  P LPG      L
Sbjct: 851  PGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPGLPGEKGDHGL 910

Query: 84   PG---PSSAPDLPGPSS---APDLPGPSSAPDL--------------------------- 110
            PG   P   P   G       P +PG     D+                           
Sbjct: 911  PGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIGPTGDKGSRGD 970

Query: 111  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------PDLPGPSSAPDL 164
            PG    P   G +  P  PGP   P L G   +P LPGP  +      P  PG    P +
Sbjct: 971  PGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPGSPGEKGVPGI 1030

Query: 165  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 224
            PG    P  PG   A    G S  P +      P  PG      L G   +P   G   +
Sbjct: 1031 PGSQGVPGSPGEKGAKGEKGQSGLPGI----GIPGRPGDKGDQGLAGFPGSPGEKGEKGS 1086

Query: 225  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 284
               PG    P  PGP  +P   G   +P LPG      LPG    P + G +  P  PGP
Sbjct: 1087 AGTPG---MPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGTPGP 1143

Query: 285  SSAPDLPG-PSSTVLGSYLGEAGHQKSP 311
            +      G P S  +    GE G Q  P
Sbjct: 1144 TGPAGQKGEPGSDGIPGSAGEKGEQGVP 1171

Arresten, comprising the C-terminal NC1 domain, inhibits angiogenesis and tumor formation. The C-terminal half is found to possess the anti-angiogenic activity. Specifically inhibits endothelial cell proliferation, migration and tube formation. Inhibits expression of hypoxia-inducible factor 1alpha and ERK1/2 and p38 MAPK activation. Ligand for alpha1/beta1 integrin.

Mus musculus (taxid: 10090)

>sp|O42854|YFHH_SCHPO SH3 domain-containing protein C23A1.17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.17 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 96/158 (60%), Gaps = 21/158 (13%)

Query: 42   SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSA---------------PDLPG 85
            S AP +P PS+ AP +P PS+AP +P P+S P +P  SS                P +P 
Sbjct: 1019 SKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA 1078

Query: 86   PSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSS 142
            PS AP +P PS  P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS 
Sbjct: 1079 PSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSG 1138

Query: 143  APDLPGPS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSS 178
            AP +P PS +AP +P PS AP +P PS +AP +P PSS
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P18583|SON_HUMAN Protein SON OS=Homo sapiens GN=SON PE=1 SV=4

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 131/287 (45%), Gaps = 66/287 (22%)

Query: 66  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-- 123
           P  S+  D P  S+   L  P    D+P   +   +  P   P+LP  ++A +L   S  
Sbjct: 320 PSTSTTMDFPESSAIEALRLPEQPVDVPSEIADSSMTRPQELPELP-KTTALELQESSVA 378

Query: 124 SAPDLPGP--SSAPDLPGPSSAP--DLPGPSS--APDLPGPSS--APDLPGP--SSAPDL 173
           SA +LPGP  +S P+L GP   P  +LPGPS+   P+LPGP S   P+LPGP  ++ P+L
Sbjct: 379 SAMELPGPPATSMPELQGPPVTPVLELPGPSATPVPELPGPLSTPVPELPGPPATAVPEL 438

Query: 174 PGPSSAP------DLPG-----------------PSSAPDLPG------PSSAPDLPGPS 204
           PGPS  P      +LPG                 P  A +LPG          P+ P  +
Sbjct: 439 PGPSVTPVPQLSQELPGLPAPSMGLEPPQEVPEPPVMAQELPGLPLVTAAVELPEQPAVT 498

Query: 205 SAPDL-PGPSSAPDLPGPSSAPDLPGP-----SSAPDLPGP---SSAPDLPGP---SSAP 252
            A +L   P +  +L  P     +  P     ++A  L G    +   +LPG    ++A 
Sbjct: 499 VAMELTEQPVTTTELEQPVGMTTVEHPGHPEVTTATGLLGQPEATMVLELPGQPVATTAL 558

Query: 253 DLPGP---SSAPDLPGPSSAPDLPGPSSAPDLPGP---SSAPDLPGP 293
           +LPG    +  P+LPG      LP  + A +L G    + A +LPGP
Sbjct: 559 ELPGQPSVTGVPELPG------LPSATRALELSGQPVATGALELPGP 599

RNA-binding protein that acts as a mRNA splicing cofactor by promoting efficient splicing of transcripts that posses weak splice sites. Specifically promotes splicing of many cell-cycle and DNA-repair transcripts that posses weak splice sites, such as TUBG1, KATNB1, TUBGCP2, AURKB, PCNT, AKT1, RAD23A, and FANCG. Probably acts by facilitating the interaction between Serine/arginine-rich proteins such as SRSF2 and the RNA polymerase II. Also binds to DNA; binds to the consensus DNA sequence: 5'-GA[GT]AN[CG][AG]CC-3'. May indirectly repress hepatitis B virus (HBV) core promoter activity and transcription of HBV genes and production of HBV virions.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
156375703	268	predicted protein [Nematostella vectensi	0.558	0.932	0.407	2e-32
61652784	405	circumsporozoite protein [Plasmodium viv	0.522	0.577	0.348	1e-30
326677446	1720	PREDICTED: hypothetical protein LOC10033	0.613	0.159	0.312	9e-30
396480997	513	predicted protein [Leptosphaeria maculan	0.502	0.438	0.396	1e-28
350633524	166	hypothetical protein ASPNIDRAFT_183966 [	0.366	0.987	0.451	2e-28
260796019	1602	hypothetical protein BRAFLDRAFT_117784 [	0.529	0.147	0.298	4e-25
328701310	869	PREDICTED: hypothetical protein LOC10016	0.332	0.171	0.487	4e-25
160165	396	circumsporozoite protein [Plasmodium sim	0.421	0.477	0.361	1e-24
47523048	2258	coagulation factor V precursor [Sus scro	0.631	0.125	0.311	1e-24
163637044	213	circumsporozoite protein variant VK247 [	0.399	0.840	0.362	1e-24

>gi|156375703|ref|XP_001630219.1| predicted protein [Nematostella vectensis] gi|156217235|gb|EDO38156.1| predicted protein [Nematostella vectensis]

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/265 (40%), Positives = 122/265 (46%), Gaps = 15/265 (5%)

Query: 16  LPSTVTERPL--EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD------LPG 67
           LP   T R +     + GPS    LPGPS+   LPGP     LPG  +  +      + G
Sbjct: 3   LPGQCTRREVLTRYVMVGPSVYMVLPGPSAYMVLPGPLVCMVLPGQCTRREVLARYVMVG 62

Query: 68  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
           PS    LPG S    LP PS    LPG       LPGPS    LPGPS    LPGP    
Sbjct: 63  PSVYMVLPGASVCMVLPEPSVCMVLPGQEVCGMVLPGPSVCMVLPGPSVCMVLPGPLVCM 122

Query: 127 DLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
            LPG  +      +PGP     LPGPS    L GPS    LPGPS    LPGP     LP
Sbjct: 123 VLPGQCTRRGFVWMPGPLVCMVLPGPSVCMVLAGPSVCMVLPGPSVCMVLPGPLVCMVLP 182

Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
           G  +  ++    +   + GPS    LPG S    LPGPS    LPGPS    LPGPS   
Sbjct: 183 GQCTRREV---LTRYVVVGPSVYMVLPGASVCMVLPGPSVCMVLPGPSVCMVLPGPSVCM 239

Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSS 268
            LPGPS    LPGP     LPG  +
Sbjct: 240 VLPGPSVCMVLPGPLVCMVLPGQCT 264

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|61652784|gb|AAX47962.1| circumsporozoite protein [Plasmodium vivax]

 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 1/235 (0%)

Query: 22  ERPLEPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
           + P E  L  P   A + PG + A + PG + A + PG + A D PG + A + PG + A
Sbjct: 59  KNPRENKLKQPEDGAGNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGA 118

Query: 81  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
            + PG + A + PG + A + PG + A D PG + A + PG + A + PG + A + PG 
Sbjct: 119 GNQPGANGAGNQPGANGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGA 178

Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
           + A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A + 
Sbjct: 179 NGAGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQ 238

Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
           PG + A + PG + A + PG + A + PG + A + PG + A + PG + A + P
Sbjct: 239 PGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQP 293

Source: Plasmodium vivax

Species: Plasmodium vivax

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|326677446|ref|XP_002661995.2| PREDICTED: hypothetical protein LOC100334539 [Danio rerio]

 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 118/282 (41%), Gaps = 7/282 (2%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            EPD   P+  PD   P+  P    P+  PD   P   PD   P+  PD   P+  PD   
Sbjct: 1097 EPDQDNPTEEPDQTIPAEEPAQNNPTEKPDQDNPGKKPDQDNPTEEPDQNNPTEEPDHNN 1156

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-------PSSAPDLPGPSSAPDLP 138
            P+  PD   P+  PD   P+  PD   P+  PD          P+  PD   P+  PD  
Sbjct: 1157 PAEKPDQDNPTEKPDHNNPAEKPDQDNPTEKPDHNNTEPDQTIPAEEPDQTNPTEKPDQD 1216

Query: 139  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
             P+  PD   P+  PD   P+  PD   P   PD   P+  PD   P+  PD   P+  P
Sbjct: 1217 NPTEEPDQDNPTEEPDQTIPAEEPDQNNPGKKPDQDNPTEKPDQNNPAEKPDQNNPAMEP 1276

Query: 199  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
            D   P+   +   P+  PD   P+  PD   P+  PD   P+  PD   P+  PD   P+
Sbjct: 1277 DQDNPTEKLEQNNPAEKPDQDNPAMEPDKNNPAEKPDQNNPAEKPDQNNPAEKPDQNNPT 1336

Query: 259  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS 300
               +   P+  PD   P+  PD   P+  PD   P+  V  S
Sbjct: 1337 EKLEQNKPTEKPDQDNPTEEPDQNNPAEKPDQNNPAERVENS 1378

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|396480997|ref|XP_003841132.1| predicted protein [Leptosphaeria maculans JN3] gi|312217706|emb|CBX97653.1| predicted protein [Leptosphaeria maculans JN3]

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/232 (39%), Positives = 100/232 (43%), Gaps = 7/232 (3%)

Query: 25  LEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 84
           ++ + P  S  PD P  S  PD P  S  PD P  S  PD P  S  PD P  S  PD P
Sbjct: 24  VQSEYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYP 83

Query: 85  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
             S  PD P  S  PD P  S  PD P  S  PD P  S  PD P  S  PD P  S  P
Sbjct: 84  ASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVP 143

Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
           D P  S  PD P  S  PD P  S  PD P  S  PD P  S  PD P  S  P+ P  S
Sbjct: 144 DYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPDYPASSHVPEYPASS 203

Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
             P  P  S  P  P        P PSS   LP  +  P  P P+ + + P 
Sbjct: 204 HVPQYPASSKTPGHPA------YPTPSSK-SLPHGTGYPHQPHPTKSVEYPH 248

Source: Leptosphaeria maculans JN3

Species: Leptosphaeria maculans

Genus: Leptosphaeria

Family: Leptosphaeriaceae

Order: Pleosporales

Class: Dothideomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|350633524|gb|EHA21889.1| hypothetical protein ASPNIDRAFT_183966 [Aspergillus niger ATCC 1015]

 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 74/164 (45%), Positives = 110/164 (67%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
           PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ 
Sbjct: 1   PGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTV 60

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG S+ P +PG 
Sbjct: 61  PGVPGQSTVPGVPGQSTVPGVPGQSTVPAVPGQSTVPGVPGQSTVPGVPGQSTVPGVPGQ 120

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
           S+ P +PG S+ P +PG S+ P +PG +S P +PG S+ P +PG
Sbjct: 121 STVPGVPGQSTVPGVPGQSTVPGVPGETSVPAVPGESTVPAVPG 164

Source: Aspergillus niger ATCC 1015

Species: Aspergillus niger

Genus: Aspergillus

Family: Trichocomaceae

Order: Eurotiales

Class: Eurotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|260796019|ref|XP_002593002.1| hypothetical protein BRAFLDRAFT_117784 [Branchiostoma floridae] gi|229278226|gb|EEN49013.1| hypothetical protein BRAFLDRAFT_117784 [Branchiostoma floridae]

 Score =  122 bits (305), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 120/248 (48%), Gaps = 11/248 (4%)

Query: 33  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 92
           S A   P P++    P P++  D P P++  D P P++  D P P++  D P P++  D 
Sbjct: 35  SEAAYKPAPTAPTGKPAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDK 94

Query: 93  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
           P P++  D P P++  D P P++  D P P++  D P P++  D P P++  D P P++ 
Sbjct: 95  PAPTAPVDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPAPTAPTDKPEPTAPADKPAPTAP 154

Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
            D P P++  D P P++    P P++  D P P++  D P P++      PS+  D P P
Sbjct: 155 TDKPAPTAPTDTPAPTAPASTPLPAAPVDKPAPTAPTDKPAPTA------PSAPKDSPAP 208

Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
              P    P++ P    P + P    P + P+    ++ P    P +    P P  A D 
Sbjct: 209 EPTPT--KPTAEPVTTKPKTEPATTKPKAGPETAKSTAEPAPAKPKAG---PAPEKAKDE 263

Query: 273 PGPSSAPD 280
            GP+   D
Sbjct: 264 AGPAKPDD 271

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328701310|ref|XP_001950899.2| PREDICTED: hypothetical protein LOC100165925 [Acyrthosiphon pisum]

 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 108/154 (70%), Gaps = 5/154 (3%)

Query: 15  YLPSTVTE--RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
           Y   T+ E  RP    + GP+ + +LPGPSS+  +PGPS + +LPGPSS+ +LPGPSS+ 
Sbjct: 154 YTNLTLNEIYRPPHSIILGPTPSTNLPGPSSSTSIPGPSGSINLPGPSSSINLPGPSSSN 213

Query: 73  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
            +P PS + +LPGPSS+ +LPGPSS+  +PGPS + +L G   + +LPGP+S+ +LPGPS
Sbjct: 214 SIPDPSGSINLPGPSSSINLPGPSSSTSIPGPSCSTNLSG---SINLPGPTSSINLPGPS 270

Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
           S+  + GPS + +LPGPSS+  +PGPS +    G
Sbjct: 271 SSTSIAGPSGSINLPGPSSSTSIPGPSCSTGFSG 304

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|160165|gb|AAA70381.1| circumsporozoite protein [Plasmodium simium]

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 105/191 (54%), Gaps = 2/191 (1%)

Query: 22  ERPLEPDL--PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
           + P E  L  PG + A D PG + A + PG + A + PG + A + PG + A + PG + 
Sbjct: 85  KNPRENKLKQPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 144

Query: 80  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
           A + PG + A D PG + A + PG + A + PG + A + PG + A D PG + A + PG
Sbjct: 145 AGNQPGANGADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPG 204

Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
            + A + PG + A D PG + A + PG + A D PG + A + PG + A + PG + A +
Sbjct: 205 ANGAGNQPGANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGN 264

Query: 200 LPGPSSAPDLP 210
            PG + A + P
Sbjct: 265 QPGANGAGNQP 275

Source: Plasmodium simium

Species: Plasmodium simium

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

>gi|47523048|ref|NP_999285.1| coagulation factor V precursor [Sus scrofa] gi|18202922|sp|Q9GLP1.1|FA5_PIG RecName: Full=Coagulation factor V; AltName: Full=Activated protein C cofactor; Contains: RecName: Full=Coagulation factor V heavy chain; Contains: RecName: Full=Coagulation factor V light chain; Flags: Precursor gi|11065896|gb|AAG28381.1|AF191308_1 coagulation factor V [Sus scrofa]

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 151/286 (52%), Gaps = 3/286 (1%)

Query: 20   VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
            +++  L PDL   + +PDL   + +PDL   + +PDL   + +PDL   + +PDL   + 
Sbjct: 1200 LSQTTLSPDLSHTTLSPDLGHTTLSPDLSHTTLSPDLSQTTLSPDLSHTTLSPDLGHTTL 1259

Query: 80   APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
            +PDL   + +PDL   + +PDL   + +PDL   + +PDL   + +PD    + +PDL  
Sbjct: 1260 SPDLSHTTLSPDLGHATLSPDLSHTTLSPDLGHTTLSPDLGHTTLSPDFSQTTLSPDLGH 1319

Query: 140  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
             + + D+   + +PDL   + +PDL   + +PDL   + +PDL   + +PDL   + +PD
Sbjct: 1320 TTLSSDVSHTTLSPDLSHTTLSPDLSHTTLSPDLGHTTLSPDLSQTTLSPDLGHMTLSPD 1379

Query: 200  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
            L   + +PDL   + +PDL   + +PDL   + +PDL   + + D    + +PDL   + 
Sbjct: 1380 LSHTTLSPDLGHTTLSPDLSHTTLSPDLGHMTLSPDLGQTTLSLDFGQTTLSPDLSHMTL 1439

Query: 260  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEA 305
            + +L   + +PDL   + +PDL     +PDL     T L S L E 
Sbjct: 1440 SSELSHETLSPDLSQVTLSPDLSEIPFSPDLW---QTTLSSDLNET 1482

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|163637044|gb|ABY27340.1| circumsporozoite protein variant VK247 [Plasmodium vivax]

 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 101/182 (55%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
            PG + A D PG + A + PG + A + PG + A + PG + A + PG + A + PG + 
Sbjct: 5   QPGENGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGNQPGANG 64

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
           A D PG + A + PG + A + PG + A + PG + A D PG + A + PG + A + PG
Sbjct: 65  ADDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPG 124

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
            + A D PG + A + PG + A D PG + A + PG + A + PG + A + PG + A +
Sbjct: 125 ANGAGDQPGANGAGNQPGANGAGDQPGANGAGNQPGANGAGNQPGANGAGNQPGANGAGN 184

Query: 209 LP 210
            P
Sbjct: 185 QP 186

Source: Plasmodium vivax

Species: Plasmodium vivax

Genus: Plasmodium

Order: Haemosporida

Class: Aconoidasida

Phylum: Apicomplexa

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
POMBASE|SPAC23A1.17	1611	SPAC23A1.17 "WIP family cytosk	0.613	0.170	0.451	4.8e-52
UNIPROTKB|P15941	1255	MUC1 "Mucin-1" [Homo sapiens (	0.587	0.209	0.501	1.2e-45
UNIPROTKB|F1RXI2	425	LOC100737091 "Uncharacterized	0.620	0.654	0.381	5.2e-42
UNIPROTKB|D2CFI5	508	TPRX1 "CRX like homeobox 2" [H	0.540	0.476	0.438	1.7e-41
UNIPROTKB|Q8N7U7	411	TPRX1 "Tetra-peptide repeat ho	0.540	0.588	0.438	1.7e-41
UNIPROTKB|F1NDF5	1658	COL4A5 "Uncharacterized protei	0.642	0.173	0.375	3.7e-41
UNIPROTKB|F1LUN5	799	Col4a5 "Protein Col4a5" [Rattu	0.656	0.367	0.367	1.1e-40
UNIPROTKB|F1N474	1688	COL4A5 "Uncharacterized protei	0.649	0.172	0.371	1.3e-40
UNIPROTKB|J9P9L4	1691	COL4A5 "Collagen alpha-5(IV) c	0.629	0.166	0.372	2.7e-40
UNIPROTKB|F1PH05	1693	COL4A5 "Collagen alpha-5(IV) c	0.629	0.166	0.372	2.8e-40

POMBASE|SPAC23A1.17 SPAC23A1.17 "WIP family cytoskeletal protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 553 (199.7 bits), Expect = 4.8e-52, P = 4.8e-52
 Identities = 135/299 (45%), Positives = 181/299 (60%)

Query:    17 PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSS-APDL 74
             PS     P+   L  P+S P    P SAP L  P S++P  P  +  P +P  SS AP +
Sbjct:   967 PSIPPPLPVSNILSSPTSEPPKDHPPSAP-LSKPVSTSPAAP-LARVPPVPKLSSKAPPV 1024

Query:    75 PGPSS-APDLPGPSSAPDLPGPSSAPDLP-----GPSSAPDLPGPSSA-PDLPGPSSAPD 127
             P PS+ AP +P PS+AP +P P+S P +P      PS+ P +P PSS  P +P PS AP 
Sbjct:  1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084

Query:   128 LPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPG 184
             +P PS  P +P PS +AP +P PS A P +P PS AP +P PS +AP +P PS AP +P 
Sbjct:  1085 VPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK 1144

Query:   185 PS-SAPDLPGPSSAPDLPGPS-SAPDLPGPSSA-PDLPGPSSA-PDLPGPSSAPDLPGPS 240
             PS +AP +P PS AP +P PS +AP +P PSS  P +P P++  P +P PS AP +P PS
Sbjct:  1145 PSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPS 1204

Query:   241 -SAPDLPGPSSAPDLPGPSSA-PDLPGPSS-APDLPGPSS-APDLPGPSSAPDLPGPSS 295
                P +P PS+AP +P PS+  P +P P++ AP +P PSS AP +  P S+  +P P S
Sbjct:  1205 VGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSS--VPSPHS 1261

GO:0005829 "cytosol" evidence=IDA

GO:0017024 "myosin I binding" evidence=ISO

GO:0030036 "actin cytoskeleton organization" evidence=ISO

GO:0030479 "actin cortical patch" evidence=ISO

GO:0032153 "cell division site" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

UNIPROTKB|P15941 MUC1 "Mucin-1" [Homo sapiens (taxid:9606)]

 Score = 491 (177.9 bits), Expect = 1.2e-45, P = 1.2e-45
 Identities = 146/291 (50%), Positives = 175/291 (60%)

Query:    27 PDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSA 80
             P   G +SAPD  P P S+AP   G +SAPD  P P S+AP   G +SAPD  P P S+A
Sbjct:   653 PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTA 712

Query:    81 PDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSA 134
             P   G +SAPD  P P S+AP   G +SAPD  P P S+AP   G +SAPD  P P S+A
Sbjct:   713 PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTA 772

Query:   135 PDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSA 188
             P   G +SAPD  P P S+AP   G +SAPD  P P S+AP   G +SAPD  P P S+A
Sbjct:   773 PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTA 832

Query:   189 PDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSA 242
             P   G +SAPD  P P S+AP   G +SAPD  P P S+AP   G +SAPD  P P S+A
Sbjct:   833 PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTA 892

Query:   243 PDLPGPSSAPDL-PGP-SSAPDLPGPSSAPDL-PGP-SSAPDLPGPSSAPD 289
             P   G +SAPD  P P S+AP   G +SAPD  P P S+AP   G +SAPD
Sbjct:   893 PPAHGVTSAPDTRPAPGSTAPPAHGVTSAPDTRPAPGSTAPPAHGVTSAPD 943

GO:0005576 "extracellular region" evidence=IEA

GO:0005737 "cytoplasm" evidence=IBA

GO:0009986 "cell surface" evidence=IBA

GO:0016324 "apical plasma membrane" evidence=IBA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0005796 "Golgi lumen" evidence=TAS

GO:0016266 "O-glycan processing" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0002039 "p53 binding" evidence=IPI

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=IDA

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0090240 "positive regulation of histone H4 acetylation" evidence=IDA

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0043618 "regulation of transcription from RNA polymerase II promoter in response to stress" evidence=IDA

GO:0006978 "DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator" evidence=IDA

GO:0010944 "negative regulation of transcription by competitive promoter binding" evidence=IDA

GO:0003712 "transcription cofactor activity" evidence=IDA

GO:0036003 "positive regulation of transcription from RNA polymerase II promoter in response to stress" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

UNIPROTKB|F1RXI2 LOC100737091 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 119/312 (38%), Positives = 136/312 (43%)

Query:    24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
             P EP LPG    P +PG    P +PG    P  PGP   P +PGP  AP +PG       
Sbjct:   125 PGEPGLPGQPGLPGIPGSKGEPGIPG-IGLPGPPGPKGFPGIPGPPGAPGVPGRIGLEGP 183

Query:    84 PGPSSAPDLPGPSSAPD--LPGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAP 135
             PGP   P  PGP   P   LPGP   P LPG      P      PGP   P  PG +   
Sbjct:   184 PGP---PGFPGPKGEPGFGLPGPPGPPGLPGFKGILGPKGDRGFPGP---PGPPGHAGLD 237

Query:   136 DLPGPSS--APD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDL 191
              LPGP     P+  PGP   P LPG + A   PGP   P +PGP   P L G P    D 
Sbjct:   238 GLPGPKGDIGPNGQPGPIGPPGLPG-TGAQGPPGP---PGIPGPIGQPGLHGIPGEKGD- 292

Query:   192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
             PGP    D+PGP      PG   AP   GP  +P +PG + A   PG      + GP   
Sbjct:   293 PGPPGF-DVPGPPGERGSPGIPGAPGPMGPPGSPGIPGKAGASGFPGAKGEMGMMGPPGP 351

Query:   252 PD---LPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSSAPDLPGPSST-VLGSYLGE 304
             P    +PG S  P L G       P  PGP+      G    P LPGP    +LGS  GE
Sbjct:   352 PGPLGIPGRSGVPGLKGDDGLQGQPGFPGPAGEKGSKGEPGLPGLPGPMDPDLLGSK-GE 410

Query:   305 AGHQKSPKGLEP 316
              G    P G+ P
Sbjct:   411 KGDPGLP-GMFP 421

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0005587 "collagen type IV" evidence=IEA

UNIPROTKB|D2CFI5 TPRX1 "CRX like homeobox 2" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 122/278 (43%), Positives = 150/278 (53%)

Query:    25 LEPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-D 82
             L P  PGP  AP +PGP+  P  LPG    P +PGP+    +P P  AP +PGP S P  
Sbjct:   189 LSPG-PGPIPAP-IPGPAQIPGPLPGSIPGP-IPGPAQ---IPSPIPAP-IPGPISGPVQ 241

Query:    83 LPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
             +PGP   P +PGP S P  +PGP S P   GP+  P +PGP+  P +PGP S P +PGP 
Sbjct:   242 IPGPFRGP-IPGPISGPAPIPGPISGP-FSGPNPGP-IPGPNPGP-IPGPISGP-IPGPI 296

Query:   142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAP 198
             S P +PGP   P + GP S P+ PGP   P +PGP S P+   +PGP S P+ PG    P
Sbjct:   297 SVP-IPGPIPGP-ISGPISGPN-PGPIPGP-IPGPISGPNPGPIPGPISGPN-PGLIPGP 351

Query:   199 DLPGPSSAPD-LPGPSSAP-DLPGPSSAPDLPGPSSAPD-LPGPSSAPDL-P--GPSSAP 252
              +PGP S P  + GP  +P  +PGP      PGP  +P  +  P S P L P  GP S P
Sbjct:   352 -IPGPISGPGPIIGPIPSPAQIPGPGRLQG-PGPILSPGRMRSPGSLPGLAPILGPGSGP 409

Query:   253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APD 289
                G   AP +PGP S P  P P   P  P  S   PD
Sbjct:   410 G-SGSVPAP-IPGPGSLP-APAPLW-PQSPDASDFLPD 443

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q8N7U7 TPRX1 "Tetra-peptide repeat homeobox protein 1" [Homo sapiens (taxid:9606)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 122/278 (43%), Positives = 150/278 (53%)

Query:    25 LEPDLPGPSSAPDLPGPSSAPD-LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-D 82
             L P  PGP  AP +PGP+  P  LPG    P +PGP+    +P P  AP +PGP S P  
Sbjct:    92 LSPG-PGPIPAP-IPGPAQIPGPLPGSIPGP-IPGPAQ---IPSPIPAP-IPGPISGPVQ 144

Query:    83 LPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
             +PGP   P +PGP S P  +PGP S P   GP+  P +PGP+  P +PGP S P +PGP 
Sbjct:   145 IPGPFRGP-IPGPISGPAPIPGPISGP-FSGPNPGP-IPGPNPGP-IPGPISGP-IPGPI 199

Query:   142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAP 198
             S P +PGP   P + GP S P+ PGP   P +PGP S P+   +PGP S P+ PG    P
Sbjct:   200 SVP-IPGPIPGP-ISGPISGPN-PGPIPGP-IPGPISGPNPGPIPGPISGPN-PGLIPGP 254

Query:   199 DLPGPSSAPD-LPGPSSAP-DLPGPSSAPDLPGPSSAPD-LPGPSSAPDL-P--GPSSAP 252
              +PGP S P  + GP  +P  +PGP      PGP  +P  +  P S P L P  GP S P
Sbjct:   255 -IPGPISGPGPIIGPIPSPAQIPGPGRLQG-PGPILSPGRMRSPGSLPGLAPILGPGSGP 312

Query:   253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APD 289
                G   AP +PGP S P  P P   P  P  S   PD
Sbjct:   313 G-SGSVPAP-IPGPGSLP-APAPLW-PQSPDASDFLPD 346

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1NDF5 COL4A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 451 (163.8 bits), Expect = 3.7e-41, P = 3.7e-41
 Identities = 117/312 (37%), Positives = 129/312 (41%)

Query:    19 TVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 78
             T+TE P  P  PGP      PG    P  PG      +PG    P +PG    P  PGP 
Sbjct:   625 TITE-PGVPGPPGPPGRNGDPGLPGDPGQPGQRGLSGIPGAKGEPGIPG-IGLPGPPGPK 682

Query:    79 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-----APDLPGPSSAPDLPGPSS 133
               P  PGP  AP  PG    P L GP   P  PG         P  PGP   P + G   
Sbjct:   683 GFPGTPGPPGAPGTPG---RPGLDGPPGPPGFPGQKGDRGFGVPGPPGPPGPPGIKGVQG 739

Query:   134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDL 191
                 PG    P LPG +     PGP    D PGPS  P LPGP   P +   GP   P  
Sbjct:   740 PKGDPGFPGNPGLPGRAGFDGTPGPKG--D-PGPSGPPGLPGPPGIPGIGGQGPPGPPGP 796

Query:   192 PGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
             PGP   P L G P    D PGP    D+PGP      PG    P LPGP  +P  PG   
Sbjct:   797 PGPVGPPGLQGVPGEKGD-PGPPGF-DVPGPPGDQGTPGYPGPPGLPGPQGSPGPPGRDG 854

Query:   251 APDLPGPSSAPDL---PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGS--YLGEA 305
              P  PG      +   PGP   P  PG S  P L G +  P  PGP    LG     GEA
Sbjct:   855 IPGFPGAKGEMGVMGAPGPPGPPGTPGRSGLPGLKGNNGLPGPPGPPGP-LGQKGVKGEA 913

Query:   306 GHQKSPKGLEPK 317
             G    P  ++PK
Sbjct:   914 GLPGPPGTVDPK 925

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005587 "collagen type IV" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0031594 "neuromuscular junction" evidence=IEA

UNIPROTKB|F1LUN5 Col4a5 "Protein Col4a5" [Rattus norvegicus (taxid:10116)]

 Score = 440 (159.9 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 115/313 (36%), Positives = 127/313 (40%)

Query:    16 LPSTVTER--PLEPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
             LP  V E+    EP LPGP     PD  G       PG    P L GP     LPG    
Sbjct:    47 LPGPVGEKGGKGEPGLPGPPGPMRPDFLGSKGEKGDPGLPGIPGLSGPKGYQGLPGDPGQ 106

Query:    72 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDL--PGPSSAPDLPGPSSAPDL 128
             P L G   +P LPGP   P LPGP      PGP  +  D+  PGP      PGP   P  
Sbjct:   107 PGLSGQPGSPGLPGPKGTPGLPGPPGLTGPPGPKGNIGDMGFPGPQGVDGPPGPPGGPGQ 166

Query:   129 PGPSSAPDLPGPSSAPDLPGPSSA--PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
             PG   +P LPG   +   PG S    P LPGP   P LPG    P + G      LPG  
Sbjct:   167 PG---SPGLPGQKGSKGEPGVSGIGLPGLPGPKGEPGLPGYPGNPGIKGSMGEAGLPG-- 221

Query:   187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
               P  PG    P LPG    P LPGP      PG    P  PGP      PGP   P   
Sbjct:   222 -LPGSPGAKGQPGLPGFPGTPGLPGPKGMNGPPGNPGLPGEPGPVGGGGRPGPPGPPGEK 280

Query:   247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSTVLGSYLGEA 305
             G      +PGP+     PG      +PGP   P L G       PG P +  L    GE 
Sbjct:   281 GKPGQDGIPGPAGQKGEPGQPGF-GIPGPPGLPGLSGQKGDGGAPGLPGNPGLPGSKGEP 339

Query:   306 GHQKSPKGLEPKP 318
             G Q  P G+ P P
Sbjct:   340 GFQGFP-GM-PGP 350

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005581 "collagen" evidence=IEA

UNIPROTKB|F1N474 COL4A5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 446 (162.1 bits), Expect = 1.3e-40, P = 1.3e-40
 Identities = 113/304 (37%), Positives = 122/304 (40%)

Query:    21 TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
             T  P  P  PG    P LPG    P LPGP      PG    P  PGP      PGP   
Sbjct:  1100 TGLPGLPGTPGAKGQPGLPGFPGTPGLPGPKGISGPPGNPGLPGEPGPVGGGGRPGPPGP 1159

Query:    81 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
             P   G      +PGP+     PG      +PGP   P L G      LPG    P LPGP
Sbjct:  1160 PGEKGKPGQDGIPGPAGQKGEPGQPGF-GIPGPRGLPGLSGQKGDEGLPGIPGNPGLPGP 1218

Query:   141 SSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPD-LPGPSSAPDLPGPSSAPDLPGPSSAP 198
                P   G    P L GP   P  PGP+   P   PGP   P  PGP+     PGP    
Sbjct:  1219 KGEPGFHG---FPGLQGPPGPPGSPGPALEGPKGSPGPQGPPGRPGPTDYQGPPGPEGPR 1275

Query:   199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
              LPG S A  + G    P  PG    P L G    P L G    P L G    P LPG  
Sbjct:  1276 GLPG-SGA--IKGERGNPGQPGQPGLPGLKGDQGPPGLQGNPGRPGLNGMKGDPGLPGVP 1332

Query:   259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS--STVLGSYLGEAGHQKSP--KGL 314
               P + GPS  P   GP   P L GP   P LPGPS  S V+    G  G    P  KGL
Sbjct:  1333 GFPGMKGPSGVPGSTGPEGDPGLIGPPGPPGLPGPSGQSIVIKGDAGPPGIPGQPGLKGL 1392

Query:   315 EPKP 318
             +  P
Sbjct:  1393 QGLP 1396

GO:0031594 "neuromuscular junction" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IEA

GO:0005605 "basal lamina" evidence=IEA

GO:0005587 "collagen type IV" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|J9P9L4 COL4A5 "Collagen alpha-5(IV) chain" [Canis lupus familiaris (taxid:9615)]

 Score = 443 (161.0 bits), Expect = 2.7e-40, P = 2.7e-40
 Identities = 115/309 (37%), Positives = 129/309 (41%)

Query:    24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
             P +P LPGP   P +PG    P +PG    P  PGP   P + GP  AP  PG      L
Sbjct:   680 PGDPGLPGPPGLPGIPGNKGEPGIPG-IGLPGPPGPKGFPGIQGPPGAPGTPGRIG---L 735

Query:    84 PGPSSAPDLPGPSSAPDL--PGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAP 135
              GPS  P  PGP   P L  PGP   P LPG      P      PGP   P LPG +   
Sbjct:   736 EGPSGPPGFPGPKGEPGLGLPGPPGPPGLPGFKGTLGPKGDRGFPGP---PGLPGRTGLD 792

Query:   136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLPG-PSSAPDLP 192
              LPGP    D+ GP   P   GP   P +   GP   P +PGP   P L G P    D P
Sbjct:   793 GLPGPKG--DV-GPKGQPGTMGPPGLPGIGVQGPPGPPGIPGPVGEPGLHGIPGEKGD-P 848

Query:   193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
             GP    D+ GP      PG   AP   GP   P LPG + A   PG      + GP   P
Sbjct:   849 GPPGF-DVLGPPGERGSPGIPGAPGPMGPPGTPGLPGKAGASGFPGAKGEMGMMGPPGPP 907

Query:   253 D---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQK 309
                 +PG S  P L G +     PGP       G    P LPGP   V    LG  G + 
Sbjct:   908 GPLGIPGRSGIPGLKGDNGLQGQPGPPGPEGEKGGKGEPGLPGPPGPVDPDLLGSKGEKG 967

Query:   310 SPKGLEPKP 318
              P GL   P
Sbjct:   968 DP-GLPGIP 975

GO:0005581 "collagen" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|F1PH05 COL4A5 "Collagen alpha-5(IV) chain" [Canis lupus familiaris (taxid:9615)]

 Score = 443 (161.0 bits), Expect = 2.8e-40, P = 2.8e-40
 Identities = 115/309 (37%), Positives = 129/309 (41%)

Query:    24 PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
             P +P LPGP   P +PG    P +PG    P  PGP   P + GP  AP  PG      L
Sbjct:   680 PGDPGLPGPPGLPGIPGNKGEPGIPG-IGLPGPPGPKGFPGIQGPPGAPGTPGRIG---L 735

Query:    84 PGPSSAPDLPGPSSAPDL--PGPSSAPDLPG------PSSAPDLPGPSSAPDLPGPSSAP 135
              GPS  P  PGP   P L  PGP   P LPG      P      PGP   P LPG +   
Sbjct:   736 EGPSGPPGFPGPKGEPGLGLPGPPGPPGLPGFKGTLGPKGDRGFPGP---PGLPGRTGLD 792

Query:   136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDL--PGPSSAPDLPGPSSAPDLPG-PSSAPDLP 192
              LPGP    D+ GP   P   GP   P +   GP   P +PGP   P L G P    D P
Sbjct:   793 GLPGPKG--DV-GPKGQPGTMGPPGLPGIGVQGPPGPPGIPGPVGEPGLHGIPGEKGD-P 848

Query:   193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
             GP    D+ GP      PG   AP   GP   P LPG + A   PG      + GP   P
Sbjct:   849 GPPGF-DVLGPPGERGSPGIPGAPGPMGPPGTPGLPGKAGASGFPGAKGEMGMMGPPGPP 907

Query:   253 D---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQK 309
                 +PG S  P L G +     PGP       G    P LPGP   V    LG  G + 
Sbjct:   908 GPLGIPGRSGIPGLKGDNGLQGQPGPPGPEGEKGGKGEPGLPGPPGPVDPDLLGSKGEKG 967

Query:   310 SPKGLEPKP 318
              P GL   P
Sbjct:   968 DP-GLPGIP 975

GO:0005581 "collagen" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	448
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-15
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-14
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-12
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-12
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-12
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-12
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-12
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-12
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-12
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-12
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-12
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-12
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-11
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-11
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-10
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-10
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-10
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-09
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-09
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-09
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-08
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-08
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	4e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-06
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	5e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	6e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	7e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-05
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	8e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.002
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	0.003
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.003
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.003
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 79.6 bits (196), Expect = 1e-15
 Identities = 81/314 (25%), Positives = 104/314 (33%), Gaps = 11/314 (3%)

Query: 17   PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLP 75
            P     RP EP +   +  PD P  S+ P  P      P  P P S       +  P  P
Sbjct: 2570 PPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP 2629

Query: 76   GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
             PS A + P P   P +P P    D P P                  SS P  P   +A 
Sbjct: 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689

Query: 136  DLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGPSSAPDLPGPSSAPD 190
               G  +S  D P P   P+    +     P P    ++    P   +AP  P   + P 
Sbjct: 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA 2749

Query: 191  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPG 247
             PG  + P  P  ++ P  P P +AP    P         S   S   LP P    D P 
Sbjct: 2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPA 2809

Query: 248  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGH 307
               AP    P +A   P     P      +AP  P     P LP   S   G  +     
Sbjct: 2810 AVLAPAAALPPAAS--PAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

Query: 308  QKSPKGLEPKPAQI 321
             +SP      PA+ 
Sbjct: 2868 SRSPAAKPAAPARP 2881

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 68/279 (24%), Positives = 92/279 (32%), Gaps = 12/279 (4%)

Query: 30   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPG-PSSAPDL 83
            P P   P  P  +    +P P  AP    P+       PD P  S+ P  P      P  
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610

Query: 84   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            P P S       +  P  P PS A + P P   P +P P    D P P            
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 144  PDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAP 198
                  SS P  P   +A    G  +S  D P P   P+    +     P P    ++  
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 199  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
              P   +AP  P   + P  PG  + P  P  ++ P  P P +AP    P         S
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

Query: 259  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
             +       S  D P    A  L   ++ P    P+  +
Sbjct: 2791 LSESRESLPSPWD-PADPPAAVLAPAAALPPAASPAGPL 2828

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 78.1 bits (192), Expect = 4e-15
 Identities = 68/283 (24%), Positives = 90/283 (31%), Gaps = 11/283 (3%)

Query: 48   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-----SAPDLPGPSSAPDLPG-PSSAPDL 101
            P P   P  P  +    +P P  AP    P+       PD P  S+ P  P      P  
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG 2610

Query: 102  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
            P P S       +  P  P PS A + P P   P +P P    D P P            
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 162  PDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAP 216
                  SS P  P   +A    G  +S  D P P   P+    +     P P    ++  
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730

Query: 217  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
              P   +AP  P   + P  PG  + P  P  ++ P  P P +AP    P         S
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVAS 2790

Query: 277  SAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
             +       S  D   P + VL               L P  +
Sbjct: 2791 LSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 76.0 bits (187), Expect = 1e-14
 Identities = 63/277 (22%), Positives = 85/277 (30%), Gaps = 6/277 (2%)

Query: 21  TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
                 P  P PS APDL         PGP  A   P   ++P     S A      +  
Sbjct: 117 PPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALP 175

Query: 81  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
              P  ++      P+  P    P++A   P   S+P     SS    PG S+A D    
Sbjct: 176 LSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAS 235

Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
           SS       S     P        P P + P     +S  + P        PGP+S+   
Sbjct: 236 SSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS-----RPGPASSSSS 290

Query: 201 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
           P   S    P    +   P    A      S        SS+ +    ++    P PS +
Sbjct: 291 PRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRS 350

Query: 261 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
           P    P    D   P   P      S+P       T 
Sbjct: 351 PSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR 387

Length = 1352

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 72.7 bits (178), Expect = 2e-13
 Identities = 67/277 (24%), Positives = 88/277 (31%), Gaps = 6/277 (2%)

Query: 16   LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
             P            P   +AP  P   + P  PG  + P  P  ++ P  P P +AP   
Sbjct: 2719 TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

Query: 76   GPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
             P         S   S   LP P    D P    AP    P +A     P   P    P+
Sbjct: 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG-PLPPPTSAQPT 2837

Query: 133  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
            + P  PGP       G S AP        P    P++ P  P       L  P+ +    
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS-PAAKPAAPARPPVRRLARPAVSRSTE 2896

Query: 193  GPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
              +  PD P     P  P  P   P  P P      P P   P  P   +         +
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956

Query: 252  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
              +P P     +PG  + P    P  AP    P+S+ 
Sbjct: 2957 GAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASST 2993

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 72.3 bits (177), Expect = 2e-13
 Identities = 67/278 (24%), Positives = 91/278 (32%), Gaps = 6/278 (2%)

Query: 24   PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 80
            P  P  P   + P  PG  + P  P  ++ P  P P +AP    P         S   S 
Sbjct: 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795

Query: 81   PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
              LP P    D P    AP    P +A     P   P    P++ P  PGP       G 
Sbjct: 2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAG-PLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854

Query: 141  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
            S AP        P    P++ P  P       L  P+ +      +  PD P     P  
Sbjct: 2855 SVAPGGDVRRRPPSRS-PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQA 2913

Query: 201  PG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 259
            P  P   P  P P      P P   P  P   +         +  +P P     +PG  +
Sbjct: 2914 PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVA 2973

Query: 260  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
             P    P  AP    P+S+       S   +   +S++
Sbjct: 2974 VPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSL 3011

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 71.1 bits (174), Expect = 6e-13
 Identities = 75/323 (23%), Positives = 100/323 (30%), Gaps = 19/323 (5%)

Query: 17   PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
            P        +P  P PS A + P P   P +P P    D P P                 
Sbjct: 2616 PLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQ 2675

Query: 77   PSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGP 131
             SS P  P   +A    G  +S  D P P   P+    +     P P    ++    P  
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735

Query: 132  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 188
             +AP  P   + P  PG  + P  P  ++ P  P P +AP    P         S   S 
Sbjct: 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795

Query: 189  PDLPGPSSAPDLPGPSSAPDLPGPSSA--------PDLPGPSSAPDLPGPSSAPDLPGPS 240
              LP P    D P    AP    P +A        P    P++ P  PGP       G S
Sbjct: 2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGS 2855

Query: 241  SAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
             AP       P S      P++    P    A      S+      P      P P +  
Sbjct: 2856 VAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPP 2915

Query: 298  LGSYLGEAGHQKSPKGLEPKPAQ 320
                  +      P+   P P +
Sbjct: 2916 PPQPQPQPPPPPQPQPPPPPPPR 2938

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.4 bits (172), Expect = 9e-13
 Identities = 75/316 (23%), Positives = 96/316 (30%), Gaps = 14/316 (4%)

Query: 17   PSTVTERPLEPDLPGP----SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGP 68
             S+  +RP            +S  D P P   P+    +     P P    ++    P  
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735

Query: 69   SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS---SA 125
             +AP  P   + P  PG  + P  P  ++ P  P P +AP    P         S   S 
Sbjct: 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795

Query: 126  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
              LP P    D P    AP    P +A     P   P    P++ P  PGP       G 
Sbjct: 2796 ESLPSPWDPADPPAAVLAPAAALPPAASPAG-PLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854

Query: 186  SSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
            S AP        P     +  +AP  P            S      P   P+ P    AP
Sbjct: 2855 SVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP 2914

Query: 244  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLG 303
              P P   P  P     P  P P   P L   +       PS A   P   + V G    
Sbjct: 2915 PPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAV 2974

Query: 304  EAGHQKSPKGLEPKPA 319
                   P      PA
Sbjct: 2975 PRFRVPQPAPSREAPA 2990

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.0 bits (171), Expect = 1e-12
 Identities = 84/355 (23%), Positives = 109/355 (30%), Gaps = 39/355 (10%)

Query: 3    APFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 62
            APF   +     +  + V  RP E   P  + A   PG    PD P    AP    P+  
Sbjct: 2462 APFSLSLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPD-PDAPPAPSRLAPAIL 2520

Query: 63   PDL---------------------------PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
            PD                            P P   P  P  +    +P P  AP    P
Sbjct: 2521 PDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEP 2580

Query: 96   S-----SAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
            +       PD P  S+ P  P      P  P P S       +  P  P PS A + P P
Sbjct: 2581 AVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDP 2640

Query: 150  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPD 208
               P +P P    D P P                  SS P  P   +A    G  +S  D
Sbjct: 2641 HPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLAD 2700

Query: 209  LPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
             P P   P+    +     P P    ++    P   +AP  P   + P  PG  + P  P
Sbjct: 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760

Query: 265  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
              ++ P  P P +AP    P         S +     L        P      PA
Sbjct: 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPA 2815

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 69.8 bits (171), Expect = 1e-12
 Identities = 66/308 (21%), Positives = 86/308 (27%), Gaps = 14/308 (4%)

Query: 21  TERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 80
              P     PGP +        S P     + AP  P    +P  PGPSS PD P P+  
Sbjct: 64  RFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS-PDPPPPTPP 122

Query: 81  PDLPGPSSAPDLP-----GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
           P  P PS APDL        S  P       A      + A D      A          
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEET 182

Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLP 192
                S   + P  +              P     SS    PG S+A D    SS     
Sbjct: 183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS 242

Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
             S     P        P P + P     +S  + P        PGP+S+   P   S  
Sbjct: 243 ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS-----RPGPASSSSSPRERSPS 297

Query: 253 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPK 312
             P    +   P    A      S        SS+ +    ++   G     +     P 
Sbjct: 298 PSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPP 357

Query: 313 GLEPKPAQ 320
                 + 
Sbjct: 358 PPADPSSP 365

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)

Query: 31  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
           GP++A   P    AP    P++A   P    A     P++A      ++AP    P+   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 91  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
                 ++   PG + AP      +    P  ++ P   GP         + A   P  +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
            AP    P    +LP     P+   P+ A     P+       P  A   P  +     P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 255
            P++AP  P  ++A +       P            G  P+ A  LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)

Query: 40  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
           GP++A   P    AP    P++A   P    A     P++A      ++AP    P+   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
                 ++   PG + AP      +    P  ++ P   GP         + A   P  +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 160 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
            AP    P    +LP     P+   P+ A     P+       P  A   P  +     P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 264
            P++AP  P  ++A +       P            G  P+ A  LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)

Query: 49  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 108
           GP++A   P    AP    P++A   P    A     P++A      ++AP    P+   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
                 ++   PG + AP      +    P  ++ P   GP         + A   P  +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 169 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 228
            AP    P    +LP     P+   P+ A     P+       P  A   P  +     P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 229 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 273
            P++AP  P  ++A +       P            G  P+ A  LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)

Query: 58  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
           GP++A   P    AP    P++A   P    A     P++A      ++AP    P+   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
                 ++   PG + AP      +    P  ++ P   GP         + A   P  +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 178 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 237
            AP    P    +LP     P+   P+ A     P+       P  A   P  +     P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 238 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 282
            P++AP  P  ++A +       P            G  P+ A  LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 49/227 (21%), Positives = 77/227 (33%), Gaps = 12/227 (5%)

Query: 67  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 126
           GP++A   P    AP    P++A   P    A     P++A      ++AP    P+   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
                 ++   PG + AP      +    P  ++ P   GP         + A   P  +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 187 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 246
            AP    P    +LP     P+   P+ A     P+       P  A   P  +     P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 247 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 291
            P++AP  P  ++A +       P            G  P+ A  LP
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 68.0 bits (166), Expect = 4e-12
 Identities = 45/217 (20%), Positives = 72/217 (33%), Gaps = 10/217 (4%)

Query: 76  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
           GP++A   P    AP    P++A   P    A     P++A      ++AP    P+   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
                 ++   PG + AP      +    P  ++ P   GP         + A   P  +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
            AP    P    +LP     P+   P+ A     P+       P  A   P  +     P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
            P++AP  P  ++A +       P            G
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASGLPDMFDG 579

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 68.0 bits (166), Expect = 5e-12
 Identities = 73/287 (25%), Positives = 93/287 (32%), Gaps = 16/287 (5%)

Query: 24   PLEPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
            P        S+ P  PGP++A    P   +AP  P   + P  PG  + P  P  ++ P 
Sbjct: 2708 PEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPP 2767

Query: 83   LPGPSSAPDLPGPSSAPDLPGPS---SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 139
             P P +AP    P         S   S   LP P    D P    AP    P +A   P 
Sbjct: 2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAS--PA 2825

Query: 140  PSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLP---GPSSAPDLPGPSSAPDLPGPS 195
                P      +AP  P     P LP G S AP       P S      P++    P   
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRR 2885

Query: 196  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
             A      S+      P      P P + P        P  P P   P  P     P  P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Query: 256  GPSSAP------DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
                A        +P P     +PG  + P    P  AP    P+S+
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.9 bits (164), Expect = 9e-12
 Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           ++ P       A   P  +     P P++   +P P    D P P+ AP  P P  AP  
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 210 PGPSSAPDLPGPSSAPD 226
               +A   P P S  +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.9 bits (164), Expect = 9e-12
 Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)

Query: 39  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 98
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 99  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
           ++ P       A   P  +     P P++   +P P    D P P+ AP  P P  AP  
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 219 PGPSSAPDLPGPSSAPD 235
               +A   P P S  +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.9 bits (164), Expect = 9e-12
 Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)

Query: 48  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 107
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
           ++ P       A   P  +     P P++   +P P    D P P+ AP  P P  AP  
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 228 PGPSSAPDLPGPSSAPD 244
               +A   P P S  +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.9 bits (164), Expect = 9e-12
 Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)

Query: 57  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
           ++ P       A   P  +     P P++   +P P    D P P+ AP  P P  AP  
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 237 PGPSSAPDLPGPSSAPD 253
               +A   P P S  +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.9 bits (164), Expect = 9e-12
 Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)

Query: 66  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 125
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
           ++ P       A   P  +     P P++   +P P    D P P+ AP  P P  AP  
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 246 PGPSSAPDLPGPSSAPD 262
               +A   P P S  +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.9 bits (164), Expect = 9e-12
 Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 1/197 (0%)

Query: 75  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 134
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
           ++ P       A   P  +     P P++   +P P    D P P+ AP  P P  AP  
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 255 PGPSSAPDLPGPSSAPD 271
               +A   P P S  +
Sbjct: 767 AAAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 68/271 (25%), Positives = 88/271 (32%), Gaps = 7/271 (2%)

Query: 27  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
                       PGP +        S P     + AP  P    +P  PGPSS PD P P
Sbjct: 61  ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS-PDPPPP 119

Query: 87  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
           +  P  P PS APDL         PGP  A   P   ++P     S A      +     
Sbjct: 120 TPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSS 178

Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
           P  ++      P+  P    P++A   P   S+P     SS    PG S+A D    SS 
Sbjct: 179 PEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSD 238

Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
                 S     P        P P + P     +S  + P        PGP+S+   P  
Sbjct: 239 SSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS-----RPGPASSSSSPRE 293

Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSTV 297
            S    P    +   P    A      S   
Sbjct: 294 RSPSPSPSSPGSGPAPSSPRASSSSSSSRES 324

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 57/291 (19%), Positives = 80/291 (27%), Gaps = 7/291 (2%)

Query: 17  PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
           P+              S A      +     P  ++      P+  P    P++A   P 
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207

Query: 77  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
             S+P     SS    PG S+A D    SS       S     P        P P + P 
Sbjct: 208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPT 267

Query: 137 LPGPSSAPD----LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
               +S  +     PGP+S+   P   S    P    +   P    A      S      
Sbjct: 268 RIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS 327

Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
             SS+ +    ++    P PS +P    P    D   P   P      S+P         
Sbjct: 328 STSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR 387

Query: 253 DLPGPSSAPDLPGPSSAPDLPG---PSSAPDLPGPSSAPDLPGPSSTVLGS 300
                + A       +    P      S  D    S A     P  T  G 
Sbjct: 388 RRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGE 438

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 56/279 (20%), Positives = 81/279 (29%), Gaps = 9/279 (3%)

Query: 16  LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
           L    +  P     P  + A      S A      +     P  ++      P+  P   
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197

Query: 76  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
            P++A   P   S+P     SS    PG S+A D    SS       S     P      
Sbjct: 198 PPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPL 257

Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
             P P + P     +S  + P        PGP+S+   P   S    P    +   P   
Sbjct: 258 PRPAPITLPTRIWEASGWNGPSS-----RPGPASSSSSPRERSPSPSPSSPGSGPAPSSP 312

Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
            A      S        SS+ +    ++    P PS +P    P    D   P   P   
Sbjct: 313 RASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRP--- 369

Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
              S       +SA       +   + G +   D  G  
Sbjct: 370 -RPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 44/210 (20%), Positives = 71/210 (33%), Gaps = 10/210 (4%)

Query: 85  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
           GP++A   P    AP    P++A   P    A     P++A      ++AP    P+   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
                 ++   PG + AP      +    P  ++ P   GP         + A   P  +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 205 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
            AP    P    +LP     P+   P+ A     P+       P  A   P  +     P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 265 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
            P++AP  P  ++A +       P      
Sbjct: 544 APAAAP-APRAAAATEPVVAPRPPRASASG 572

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 46/219 (21%), Positives = 72/219 (32%), Gaps = 12/219 (5%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
           P    AP    P++A   P    A     P++A      ++AP    P+         ++
Sbjct: 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQAS 440

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PG + AP      +    P  ++ P   GP         + A   P  + AP    P
Sbjct: 441 ARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDP 496

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
               +LP     P+   P+ A     P+       P  A   P  +     P P++AP  
Sbjct: 497 PPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP-A 550

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 246
           P  ++A +       P            G  P+ A  LP
Sbjct: 551 PRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 73/318 (22%), Positives = 96/318 (30%), Gaps = 39/318 (12%)

Query: 15   YLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPD 73
            +   T+   P    L      P  P      +   P +A   P P    P  P    AP 
Sbjct: 2454 FFARTILGAPFSLSLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPS 2513

Query: 74   LPGPSSAPDL---------------------------PGPSSAPDLPGPSSAPDLPGPSS 106
               P+  PD                            P P   P  P  +    +P P  
Sbjct: 2514 RLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRP 2573

Query: 107  APDLPGPS-----SAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
            AP    P+       PD P  S+ P  P      P  P P S       +  P  P PS 
Sbjct: 2574 APRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSP 2633

Query: 161  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
            A + P P   P +P P    D P P                  SS P  P   +A    G
Sbjct: 2634 AANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693

Query: 221  P-SSAPDLPGPSSAPDLPGPSSAPDLPGP----SSAPDLPGPSSAPDLPGPSSAPDLPGP 275
              +S  D P P   P+    +     P P    ++    P   +AP  P   + P  PG 
Sbjct: 2694 SLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGG 2753

Query: 276  SSAPDLPGPSSAPDLPGP 293
             + P  P  ++ P  P P
Sbjct: 2754 PARPARPPTTAGPPAPAP 2771

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 63.0 bits (153), Expect = 1e-10
 Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 12/213 (5%)

Query: 27  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
           P    P++A   P    A     P++A      ++AP    P+         ++   PG 
Sbjct: 387 PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGG 446

Query: 87  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
           + AP      +    P  ++ P   GP         + A   P  + AP    P    +L
Sbjct: 447 APAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEEL 502

Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
           P     P+   P+ A     P+       P  A   P  +     P P++AP  P  ++A
Sbjct: 503 P-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP-APRAAAA 556

Query: 207 PDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 237
            +       P            G  P+ A  LP
Sbjct: 557 TEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 37/187 (19%), Positives = 54/187 (28%), Gaps = 1/187 (0%)

Query: 22  ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
           E P  P   GP      P   +AP  P   +        +                    
Sbjct: 598 EGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657

Query: 82  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
            +P  S   D   P+ A      +  P     + A       + P     ++ P      
Sbjct: 658 AVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADD 716

Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
            A   P  +     P P++   +P P    D P P+ AP  P P  AP      +A   P
Sbjct: 717 PAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP 776

Query: 202 GPSSAPD 208
            P S  +
Sbjct: 777 SPPSEEE 783

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 56/278 (20%), Positives = 77/278 (27%), Gaps = 5/278 (1%)

Query: 16  LPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 75
           LP +  E         P+  P    P++A   P   S+P     SS    PG S+A D  
Sbjct: 174 LPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAG 233

Query: 76  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
             SS       S     P        P P + P     +S  + P        PGP+S+ 
Sbjct: 234 ASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS-----RPGPASSS 288

Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
             P   S    P    +   P    A      S        SS+ +    ++    P PS
Sbjct: 289 SSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPS 348

Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
            +P    P    D   P   P      S+P              + A       +    P
Sbjct: 349 RSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFP 408

Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                P      +A            P     P  P P
Sbjct: 409 AGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPP 446

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 33/211 (15%), Positives = 50/211 (23%), Gaps = 6/211 (2%)

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           ++ P       A   P  +     P P++   +P     P  P     P        P  
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVP----LPPEPDDPPDPAGAPAQPPPP- 761

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
           P P+ A                   +   PS
Sbjct: 762 PAPAPAAAPAAAPPPSPPSEEEEMAEDDAPS 792

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 34/185 (18%), Positives = 51/185 (27%), Gaps = 1/185 (0%)

Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
           ++ P       A   P  +     P P++   +P P    D P P+ AP  P P  AP  
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 291 PGPSS 295
               +
Sbjct: 767 AAAPA 771

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 34/183 (18%), Positives = 52/183 (28%), Gaps = 1/183 (0%)

Query: 17  PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
               +  P E   P   +AP  P   +        +                     +P 
Sbjct: 602 APASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPD 661

Query: 77  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
            S   D   P+ A      +  P     + A       + P     ++ P       A  
Sbjct: 662 ASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQ 720

Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
            P  +     P P++   +P P    D P P+ AP  P P  AP      +A   P P S
Sbjct: 721 PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780

Query: 197 APD 199
             +
Sbjct: 781 EEE 783

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 60.4 bits (147), Expect = 1e-09
 Identities = 44/196 (22%), Positives = 64/196 (32%), Gaps = 5/196 (2%)

Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 161
            GP+          AP   GP      P   +AP      +AP   G ++AP     + A
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAP---AAPAAPAPAGAAAAPAEASAAPA 644

Query: 162 PDLPGPSSAPDLPG--PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 219
           P +  P   P       +S      P+ A      +  P     + A       + P   
Sbjct: 645 PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPA 704

Query: 220 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 279
             ++ P       A   P  +     P P++   +P P    D P P+ AP  P P  AP
Sbjct: 705 PAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764

Query: 280 DLPGPSSAPDLPGPSS 295
                 +A   P P S
Sbjct: 765 APAAAPAAAPPPSPPS 780

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 63/301 (20%), Positives = 87/301 (28%), Gaps = 2/301 (0%)

Query: 13  ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
            ++ P          D     S   L   S+        +          P  P P    
Sbjct: 18  GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGT 77

Query: 73  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGP 131
           + P   S        S      P+       P  +   P P +  P  P PS APDL   
Sbjct: 78  EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEM 137

Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
                 PGP  A   P   ++P     S A      +     P  ++      P+  P  
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSSPEETARAPSSPPAEPPPS 196

Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 251
             P++A   P   S+P     SS    PG S+A D    SS       S     P     
Sbjct: 197 TPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256

Query: 252 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSP 311
              P P + P     +S  + P     P     S     P PS +  GS    +  + S 
Sbjct: 257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASS 316

Query: 312 K 312
            
Sbjct: 317 S 317

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 47/218 (21%), Positives = 73/218 (33%), Gaps = 13/218 (5%)

Query: 13  ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
           A   P+        P  P    A     P++A      ++AP    P+         ++ 
Sbjct: 383 AQPAPAAAAPAAAAPA-PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASA 441

Query: 73  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 132
             PG + AP  P P++A   P  ++ P   GP         + A   P  + AP    P 
Sbjct: 442 RGPGGAPAP-APAPAAA---PAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497

Query: 133 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 192
              +LP     P+   P+ A     P+       P  A   P  +     P P++AP  P
Sbjct: 498 PWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP-AP 551

Query: 193 GPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAPDLP 228
             ++A +       P            G  P+ A  LP
Sbjct: 552 RAAAATEPVVAPRPPRASASGLPDMFDGDWPALAARLP 589

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 32/194 (16%), Positives = 50/194 (25%), Gaps = 1/194 (0%)

Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 188
            GP+          AP   GP      P   +AP  P   +        +          
Sbjct: 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV 647

Query: 189 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
                      +P  S   D   P+ A      +  P     + A       + P     
Sbjct: 648 AAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Query: 249 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQ 308
           ++ P       A   P  +     P P++   +P P    D P P+          A   
Sbjct: 707 ATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAP 766

Query: 309 KSPKGLEPKPAQIS 322
            +     P P+  S
Sbjct: 767 AAAPAAAPPPSPPS 780

Length = 824

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.2 bits (138), Expect = 1e-08
 Identities = 39/181 (21%), Positives = 60/181 (33%), Gaps = 9/181 (4%)

Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
           GP++A   P    AP    P++A   P    A     P++A      ++AP    P+   
Sbjct: 373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA 432

Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
                 ++   PG + AP      +    P  ++ P   GP         + A   P  +
Sbjct: 433 LAAARQASARGPGGAPAP----APAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAA 488

Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKP 318
            AP    P    +LP     P+   P+ A     P+  V  S    A            P
Sbjct: 489 PAPADDDPPPWEELP-----PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAP 543

Query: 319 A 319
           A
Sbjct: 544 A 544

Length = 700

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 61/276 (22%), Positives = 84/276 (30%), Gaps = 5/276 (1%)

Query: 44  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 103
               P P + P            G   +      +         +A            PG
Sbjct: 18  GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVA---GAAACDRFEPPTGPPPG 74

Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
           P +        S P     + AP  P    +P  PGPSS PD P P+  P  P PS APD
Sbjct: 75  PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS-PDPPPPTPPPASPPPSPAPD 133

Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
           L         PGP  A   P   ++P     S A      +     P  ++      P+ 
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSSPEETARAPSSPPAE 192

Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
            P    P++A   P   S+P     SS    PG S+A D    SS       S     P 
Sbjct: 193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252

Query: 284 PSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
                  P P +     +     +  S +      +
Sbjct: 253 NECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSS 288

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.8 bits (132), Expect = 6e-08
 Identities = 62/252 (24%), Positives = 83/252 (32%), Gaps = 5/252 (1%)

Query: 71  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
               P P + P            G   +      +         +A            PG
Sbjct: 18  GEFFPRPPATPGDAADDLLSGSQGQLVSDSAELAAVTVVA---GAAACDRFEPPTGPPPG 74

Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
           P +        S P     + AP  P    +P  PGPSS PD P P+  P  P PS APD
Sbjct: 75  PGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSS-PDPPPPTPPPASPPPSPAPD 133

Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 250
           L         PGP  A   P   ++P     S A      +     P  ++      P+ 
Sbjct: 134 LSEMLRPVGSPGPPPAASPPAAGASPA-AVASDAASSRQAALPLSSPEETARAPSSPPAE 192

Query: 251 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKS 310
            P    P++A   P   S+P     SS    PG S+A D    SS    S     G    
Sbjct: 193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPE 252

Query: 311 PKGLEPKPAQIS 322
            +   P+PA I+
Sbjct: 253 NECPLPRPAPIT 264

Length = 1352

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 52/274 (18%), Positives = 82/274 (29%), Gaps = 14/274 (5%)

Query: 30  PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPG 85
                AP    P+        PG  +A  +   +         +A     P +A      
Sbjct: 362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAT 421

Query: 86  PSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 144
            + AP   P P +  D    ++  D P P+ A       S  D        D  G +SAP
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAP 480

Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
               P  A   P P +A       +A       +A       +A   P P + P  P  +
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540

Query: 205 SAPDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
           +     G ++A         +   S        ++ P    P++AP    P  A  +P P
Sbjct: 541 APAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAA-PAAAPKPAAPRVAVQVPTP 599

Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
            +                 +A     P    D+P
Sbjct: 600 RARAATGDAPPNGAARAEQAAESRGAPPPWEDIP 633

Length = 830

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 44/208 (21%), Positives = 57/208 (27%), Gaps = 20/208 (9%)

Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 162
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 221
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 222 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 274
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 275 PSSAPDLPGPSSAPDLPGPSSTVLGSYL 302
           P +A     P+ AP    P++ +   Y 
Sbjct: 263 PLAA----QPAPAPGPGEPTARLNPKYT 286

Length = 617

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 38/188 (20%), Positives = 60/188 (31%), Gaps = 2/188 (1%)

Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
           PG      + G   AP     ++      P+         +A   P  ++A       + 
Sbjct: 368 PGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALA-PKAAAAAAATRAEAP 426

Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
           P  P P +  D    ++  D P P+ A       S  D        D  G +SAP    P
Sbjct: 427 PAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAPASDAP 485

Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
             A   P P +A       +A       +A       +A   P P + P  P  ++    
Sbjct: 486 PDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAAR 545

Query: 291 PGPSSTVL 298
            G ++  L
Sbjct: 546 AGGAAAAL 553

Length = 830

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 32  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 90
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 91  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 149
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 150 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 202
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 203 PSSAPDLPGPSSAPDLPGPSS 223
           P +A     P+ AP    P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 41  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 99
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 158
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 159 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 211
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 212 PSSAPDLPGPSSAPDLPGPSS 232
           P +A     P+ AP    P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 50  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 108
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 167
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 168 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 220
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 221 PSSAPDLPGPSSAPDLPGPSS 241
           P +A     P+ AP    P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 59  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 117
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 176
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 177 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 229
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 230 PSSAPDLPGPSSAPDLPGPSS 250
           P +A     P+ AP    P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 68  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 126
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 185
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 186 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 238
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 239 PSSAPDLPGPSSAPDLPGPSS 259
           P +A     P+ AP    P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 77  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 135
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 194
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 195 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 247
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 248 PSSAPDLPGPSSAPDLPGPSS 268
           P +A     P+ AP    P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 144
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 203
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 204 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 256
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 257 PSSAPDLPGPSSAPDLPGPSS 277
           P +A     P+ AP    P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 43/201 (21%), Positives = 55/201 (27%), Gaps = 20/201 (9%)

Query: 95  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAP 153
           PS+    P P  A     P      PG        GP +    PG      LP    + P
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPR--PGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYP 147

Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGP 212
                      P  +                P ++P    P    D     +  P+    
Sbjct: 148 AYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQR 207

Query: 213 SSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPG 265
               D P P          D P P      PG        PGP    D P     P  PG
Sbjct: 208 RRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPG 262

Query: 266 PSSAPDLPGPSSAPDLPGPSS 286
           P +A     P+ AP    P++
Sbjct: 263 PLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 43/202 (21%), Positives = 59/202 (29%), Gaps = 20/202 (9%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSA 80
            ++P    P+  P     +S P+LP  G        GP +    PG      LP    + 
Sbjct: 87  TVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAY 146

Query: 81  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPG 139
           P           P  +                P ++P    P    D     +  P+   
Sbjct: 147 PAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQ 206

Query: 140 PSSAPDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLP 192
                D P P          D P P      PG        PGP    D P     P  P
Sbjct: 207 RRRDYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAP 261

Query: 193 GPSSAPDLPGPSSAPDLPGPSS 214
           GP +A     P+ AP    P++
Sbjct: 262 GPLAA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 60/263 (22%), Positives = 79/263 (30%), Gaps = 10/263 (3%)

Query: 31   GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
            GP   P    P++ P  PGP       G S AP        P    P++ P  P      
Sbjct: 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS-PAAKPAAPARPPVR 2884

Query: 91   DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
             L  P+ +      +  PD P     P  P  P   P  P P      P P   P  P  
Sbjct: 2885 RLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLA 2944

Query: 150  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
             +         +  +P P     +PG  + P    P  AP    P+S+       S   +
Sbjct: 2945 PTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRV 3004

Query: 210  PGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 264
               +S+  L     P P S      P    D     +       S   DL      P  P
Sbjct: 3005 SSWASSLALHEETDPPPVSLKQTLWPPD--DTEDSDADSLFDSDSERSDLEALDPLPPEP 3062

Query: 265  -GPSSAPDLPGPSSAPDLPGPSS 286
              P +    P    A     PSS
Sbjct: 3063 HDPFAHEPDPATPEAGARESPSS 3085

Length = 3151

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 42/199 (21%), Positives = 56/199 (28%), Gaps = 20/199 (10%)

Query: 18  STVTERPLEPDLPGPSSAPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDL 74
            +  E    P     +S P+LP  G        GP +    PG      LP    + P  
Sbjct: 90  PSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAY 149

Query: 75  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSS 133
                    P  +                P ++P    P    D     +  P+      
Sbjct: 150 QQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRR 209

Query: 134 APDLPGPSSAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPS 186
             D P P          D P P      PG        PGP    D P     P  PGP 
Sbjct: 210 DYDHPRPDWDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPGPL 264

Query: 187 SAPDLPGPSSAPDLPGPSS 205
           +A     P+ AP    P++
Sbjct: 265 AA----QPAPAPGPGEPTA 279

Length = 617

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 32/140 (22%), Positives = 50/140 (35%)

Query: 18  STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
           ++  ER L   L        + G + AP    PS+A   P  + AP    P++A      
Sbjct: 367 ASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPA 426

Query: 78  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
           ++    P P+ AP  P P+      G  S P    PS+ P     ++      P+ AP  
Sbjct: 427 AAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPA 486

Query: 138 PGPSSAPDLPGPSSAPDLPG 157
               +A      + A     
Sbjct: 487 APAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 42/191 (21%), Positives = 54/191 (28%), Gaps = 20/191 (10%)

Query: 17  PSTVTERPLEPDLP--GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPD 73
           P     R  EP+LP  G        GP +    PG      LP    + P          
Sbjct: 98  PPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGA 157

Query: 74  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPGPSSAPDLPGPS 132
            P  +                P ++P    P    D     +  P+        D P P 
Sbjct: 158 WPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPD 217

Query: 133 SAP------DLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
                    D P P      PG        PGP    D P     P  PGP +A     P
Sbjct: 218 WDRPRRDRTDRPEPP-----PGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAA----QP 268

Query: 186 SSAPDLPGPSS 196
           + AP    P++
Sbjct: 269 APAPGPGEPTA 279

Length = 617

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 48/285 (16%), Positives = 77/285 (27%), Gaps = 26/285 (9%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
           +P P +       +SA       +       +        ++  + P  + AP       
Sbjct: 380 VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDL---PGPSSAP 144
                G +  P     + A            P   S     P   + PD    P P +A 
Sbjct: 440 DDAADGDAPVPA-KANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAA 498

Query: 145 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA------- 197
                 +A       +A       +A   P P + P  P  ++     G ++A       
Sbjct: 499 PSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRN 558

Query: 198 -------------PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 244
                             P++AP      +AP +      P     +      G + A  
Sbjct: 559 AGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQ 618

Query: 245 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 289
                 AP  P     PD   P SA +  G      +P   S PD
Sbjct: 619 AAESRGAPP-PWEDIPPDDYVPLSADEGFGGPDDGFVPVFDSGPD 662

Length = 830

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.3 bits (115), Expect = 7e-06
 Identities = 37/181 (20%), Positives = 56/181 (30%), Gaps = 6/181 (3%)

Query: 120 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPG 175
                AP    P+        PG  +A  +   +         +A     P +A      
Sbjct: 362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAT 421

Query: 176 PSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 234
            + AP   P P +  D    ++  D P P+ A       S  D        D  G +SAP
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAP 480

Query: 235 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
               P  A   P P +A       +A       +A       +A   P P + P  P  +
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA 540

Query: 295 S 295
           +
Sbjct: 541 A 541

Length = 830

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 2/125 (1%)

Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 232
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
                G  S P    PS+ P     ++      P+ AP      +A   P   +AP  P 
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA--PAAPAAPAAPA 504

Query: 293 PSSTV 297
            +   
Sbjct: 505 GADDA 509

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 47  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 106
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 56  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 115
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 65  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 124
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 74  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 133
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 83  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 92  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 151
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 160
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 169
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 178
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 187
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 214
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.1 bits (115), Expect = 8e-06
 Identities = 28/120 (23%), Positives = 44/120 (36%)

Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
                G  S P    PS+ P     ++      P+ AP      +A      + A     
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/133 (26%), Positives = 41/133 (30%), Gaps = 2/133 (1%)

Query: 23  RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
               P  P      D    ++  D   P    D    S++P  P  SS      PS   D
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPED 203

Query: 83  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
              PS +   P PSS      P S      PS  P    P   P    P  +   P P S
Sbjct: 204 PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPS 263

Query: 143 APDLPGPSSAPDL 155
           A   P P     L
Sbjct: 264 ASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 34/201 (16%), Positives = 51/201 (25%)

Query: 12  EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 71
              + P      P    +  P+   +  G +     PGP+S+   P   S    P    +
Sbjct: 246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305

Query: 72  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
              P    A      S        SS+ +    ++    P PS +P    P    D   P
Sbjct: 306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSP 365

Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
              P      S+P              + A       +    P     P      +A   
Sbjct: 366 RKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGA 425

Query: 192 PGPSSAPDLPGPSSAPDLPGP 212
                    P     P  P P
Sbjct: 426 FYARYPLLTPSGEPWPGSPPP 446

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 46/238 (19%), Positives = 64/238 (26%), Gaps = 3/238 (1%)

Query: 11  TEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 70
             +    S              +S+ D     S+    GP +   LP P+          
Sbjct: 212 PISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWE 271

Query: 71  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 130
           A    GPSS P     SS+P    PS +P  PG   +   P    A      S       
Sbjct: 272 ASGWNGPSSRPGPASSSSSPRERSPSPSPSSPG---SGPAPSSPRASSSSSSSRESSSSS 328

Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
            SS+ +    ++    P PS +P    P    D   P   P      S+P          
Sbjct: 329 TSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRR 388

Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 248
               + A       +    P     P      +A            P     P  P P
Sbjct: 389 RARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPP 446

Length = 1352

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
           + G + AP    PS+A   P  + AP    P++A      ++    P P+ AP  P P+ 
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLP 147
                G  S P    PS+ P     ++      P+ AP   P P++AP  P   +AP   
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP--A 504

Query: 148 GPSSAPDL 155
           G   A  L
Sbjct: 505 GADDAATL 512

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 36  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 96  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 156 PGPSSAPDL 164
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 45  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 104
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 105 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 164
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 165 PGPSSAPDL 173
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 54  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 113
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 114 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 173
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 174 PGPSSAPDL 182
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 63  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 122
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 123 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 182
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 183 PGPSSAPDL 191
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 72  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 131
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 132 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 192 PGPSSAPDL 200
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 81  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 140
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 141 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 200
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 201 PGPSSAPDL 209
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 210 PGPSSAPDL 218
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 99  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 158
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 159 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 218
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 219 PGPSSAPDL 227
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 108 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 167
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 168 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 227
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 228 PGPSSAPDL 236
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 177 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 236
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 237 PGPSSAPDL 245
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 126 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 185
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 186 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 245
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 246 PGPSSAPDL 254
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 135 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 194
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 195 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 254
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 255 PGPSSAPDL 263
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 264 PGPSSAPDL 272
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 153 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 212
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 213 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 272
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 273 PGPSSAPDL 281
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 35/129 (27%), Positives = 41/129 (31%), Gaps = 2/129 (1%)

Query: 162 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 221
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 222 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 281
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 282 PGPSSAPDL 290
           P P     L
Sbjct: 268 PAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 34/128 (26%), Positives = 41/128 (32%), Gaps = 2/128 (1%)

Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 231 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 290
           S +   P PSS      P S      PS  P    P   P    P  +   P P SA   
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASAT 267

Query: 291 PGPSSTVL 298
           P P   + 
Sbjct: 268 PAPIGGIT 275

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 60/277 (21%), Positives = 88/277 (31%), Gaps = 27/277 (9%)

Query: 17  PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
            +  T     P  P P +  D    ++  D P P+ A       S  D        D  G
Sbjct: 417 AAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SG 475

Query: 77  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
            +SAP    P  A   P P +A       +A       +A       S  D P  ++   
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA------SREDAPAAAAP-- 527

Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSA-------PDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
            P P + P  P  ++     G ++A         +   S        ++ P    P++AP
Sbjct: 528 -PAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAA-PAAAP 585

Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
               P  A  +P P +                 +A     P    D+P     PD   P 
Sbjct: 586 KPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIP-----PDDYVPL 640

Query: 250 SAPDLPGPSSAPDLPGPSSAPD----LPGPSSAPDLP 282
           SA +  G      +P   S PD     P P+ AP  P
Sbjct: 641 SADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPP 677

Length = 830

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 70/312 (22%), Positives = 93/312 (29%), Gaps = 13/312 (4%)

Query: 36  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 95
           P  P  +S      P+ +   P  S     P P       GP            P     
Sbjct: 243 PLQPQTASQQSPQPPAPSSRHPQSSHHGPGP-PMPHALQQGPVFLQHPSSNPPQPFGLAQ 301

Query: 96  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 155
           S  P LP PS A        +     P   P       AP +P     P  P P      
Sbjct: 302 SQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPN-- 359

Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 215
                 P L GPS  P +P     P    P S+     P SA   P        P  S  
Sbjct: 360 QSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVP 419

Query: 216 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP----------GPSSAPDLPGPSSAPDLPG 265
              P  + +  LP  +S     G  S P             G  +    P   ++     
Sbjct: 420 AQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAP 479

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPAQISFVL 325
           P ++     P SA    G  + P  P P   +    L EA   +SP      P+    V+
Sbjct: 480 PRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVV 539

Query: 326 NIFANFHQTLRF 337
           N  ++  Q+ RF
Sbjct: 540 NTPSHASQSARF 551

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P    PS+A   P  + AP    P++A      ++    P P+ AP  P P+      G
Sbjct: 393 APAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGG 452

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAP 144
             S P    PS+ P     ++      P+ AP   P P++AP  P   +AP   G   A 
Sbjct: 453 APSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAP--AGADDAA 510

Query: 145 DL 146
            L
Sbjct: 511 TL 512

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 33/143 (23%), Positives = 41/143 (28%), Gaps = 10/143 (6%)

Query: 180 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
           P  P      D    ++  D   P    D    S++P  P  SS      PS   D   P
Sbjct: 150 PGPPLDEEDEDADVATTNSDNSFPGEDAD--PASASPSDPPSSSPGVPSFPSPPEDPSSP 207

Query: 240 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLG 299
           S +   P PSS      P S      PS  P    P   P    P  +   P P S    
Sbjct: 208 SDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA- 266

Query: 300 SYLGEAGHQKSPKGLEPKPAQIS 322
                        G+      I+
Sbjct: 267 -------TPAPIGGITLDDDAIA 282

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 34/118 (28%), Positives = 44/118 (37%), Gaps = 1/118 (0%)

Query: 12  EADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSS 70
           E   + +T ++     +   P+SA     PSS+P +P   S P+ P   S   LP  PSS
Sbjct: 159 EDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSS 218

Query: 71  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 128
                 P S      PS  P    P   P    P  +   P P SA   P P     L
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 32  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 91
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 92  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 147
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 148 GPSSAPDLPGPSSAPDL 164
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 41  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 100
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 101 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 156
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 157 GPSSAPDLPGPSSAPDL 173
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 50  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 109
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 110 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 165
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 166 GPSSAPDLPGPSSAPDL 182
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 59  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 118
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 119 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 174
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 175 GPSSAPDLPGPSSAPDL 191
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 68  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 128 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 183
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 184 GPSSAPDLPGPSSAPDL 200
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 77  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 137 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 192
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 193 GPSSAPDLPGPSSAPDL 209
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 201
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 202 GPSSAPDLPGPSSAPDL 218
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 95  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 154
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 155 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 210
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 211 GPSSAPDLPGPSSAPDL 227
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 104 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 163
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 219
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 220 GPSSAPDLPGPSSAPDL 236
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 113 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 172
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 173 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 228
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 229 GPSSAPDLPGPSSAPDL 245
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 122 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 181
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 182 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 237
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 238 GPSSAPDLPGPSSAPDL 254
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 131 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 190
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 191 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 246
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 247 GPSSAPDLPGPSSAPDL 263
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 140 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 199
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 200 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 255
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 256 GPSSAPDLPGPSSAPDL 272
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 30/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 264
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 265 GPSSAPDLPGPSSAPDL 281
             + A     P+   D+
Sbjct: 480 AAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 10/133 (7%)

Query: 167 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 226
           P++A +   P+       P +A     P +        +A     P++A   P    A  
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAA----PAAAASAPAAPPAAA 421

Query: 227 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLP 282
            P P +AP    P++AP    P++   L     A   P   + P      P  +SA   P
Sbjct: 422 PPAPVAAPAAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 283 GPSSAPDLPGPSS 295
             + A     P+ 
Sbjct: 480 AAAPAAARLTPTE 492

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 28/165 (16%), Positives = 43/165 (26%), Gaps = 6/165 (3%)

Query: 17  PSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 76
            ++    P             +P  S   D   P+ A      +  P     + A     
Sbjct: 638 EASAAPAPGVAAPEHHPKHVAVPDASDGGD-GWPAKAGGAAPAAPPPAPAPAAPAAPAGA 696

Query: 77  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA---PDLPGPSSAPDLPGPSS 133
             + P     ++ P       A   P  +     P P++    P  P P   PD  G  +
Sbjct: 697 APAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPA 756

Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPS--SAPDLPGPSSAPDLPGP 176
            P  P   +    P  +  P  P      A D        D    
Sbjct: 757 QPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDA 801

Length = 824

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 42.0 bits (98), Expect = 6e-04
 Identities = 60/253 (23%), Positives = 75/253 (29%), Gaps = 6/253 (2%)

Query: 27  PDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
             L  PSS P  P     S  P LP PS A        +     P   P       AP +
Sbjct: 284 VFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSM 343

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           P     P  P P            P L GPS  P +P     P    P S+     P SA
Sbjct: 344 PHIKPPPTTPIPQLPN--QSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSA 401

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG- 202
              P        P  S     P  + +  LP  +S     G  S P     +  P   G 
Sbjct: 402 HPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGG 461

Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
             +    P   ++     P ++     P SA    G  + P  P P           A +
Sbjct: 462 LPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEE 521

Query: 263 LPGPSSAPDLPGP 275
              P   P  P P
Sbjct: 522 PESPPPPPRSPSP 534

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 31/116 (26%), Positives = 33/116 (28%), Gaps = 2/116 (1%)

Query: 22  ERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 81
                 D   P    D    S +         P  P P   P  P  SS P  P PSS  
Sbjct: 163 VATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLP--PAPSSFQ 220

Query: 82  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 137
               P S      PS  P    P   P    P  +   P P SA   P P     L
Sbjct: 221 SDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 40  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 99
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
               P           AP  P P   P   G    P      +A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736

Query: 160 SAPDLPGPSSAP 171
             P+ PG   A 
Sbjct: 737 PEPEPPGAEQAD 748

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 58  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 117
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 118 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 177
               P           AP  P P   P   G    P      +A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736

Query: 178 SAPDLPGPSSAP 189
             P+ PG   A 
Sbjct: 737 PEPEPPGAEQAD 748

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 76  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 135
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
               P           AP  P P   P   G    P      +A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736

Query: 196 SAPDLPGPSSAP 207
             P+ PG   A 
Sbjct: 737 PEPEPPGAEQAD 748

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 94  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 153
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
               P           AP  P P   P   G    P      +A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736

Query: 214 SAPDLPGPSSAP 225
             P+ PG   A 
Sbjct: 737 PEPEPPGAEQAD 748

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 171
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 172 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
               P           AP  P P   P   G    P      +A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736

Query: 232 SAPDLPGPSSAP 243
             P+ PG   A 
Sbjct: 737 PEPEPPGAEQAD 748

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 189
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
               P           AP  P P   P   G    P      +A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736

Query: 250 SAPDLPGPSSAP 261
             P+ PG   A 
Sbjct: 737 PEPEPPGAEQAD 748

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
               P           AP  P P   P   G    P      +A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736

Query: 268 SAPDLPGPSSAP 279
             P+ PG   A 
Sbjct: 737 PEPEPPGAEQAD 748

Length = 753

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/132 (20%), Positives = 33/132 (25%), Gaps = 6/132 (4%)

Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 216
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 217 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 276
               P           AP  P P   P   G    P     + A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAA-AGPAPCGSSLIASPTAP 736

Query: 277 SAPDLPGPSSAP 288
             P+ PG   A 
Sbjct: 737 PEPEPPGAEQAD 748

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 46/208 (22%), Positives = 61/208 (29%), Gaps = 9/208 (4%)

Query: 23   RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAP 81
            RP    L  P+ +      +  PD P     P  P  P   P  P P      P P   P
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

Query: 82   DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 141
              P   +         +  +P P     +PG  + P    P  AP    P+S+       
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGH 2999

Query: 142  SAPDLPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 196
            S   +   +S+  L     P P S      P    D     +       S   DL     
Sbjct: 3000 SLSRVSSWASSLALHEETDPPPVSLKQTLWPPD--DTEDSDADSLFDSDSERSDLEALDP 3057

Query: 197  APDLP-GPSSAPDLPGPSSAPDLPGPSS 223
             P  P  P +    P    A     PSS
Sbjct: 3058 LPPEPHDPFAHEPDPATPEAGARESPSS 3085

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 47/231 (20%), Positives = 69/231 (29%), Gaps = 12/231 (5%)

Query: 20  VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 79
           V   PL  D+  P+  P +   +         +    P P +A      +    + G + 
Sbjct: 243 VISHPLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAAL 302

Query: 80  A---PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 136
           A     LP P   P       A +      A ++  P   P    P   P    P+  P 
Sbjct: 303 AGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTP- 361

Query: 137 LPGPSSAPDL-----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 191
              PSS  DL         ++       SA     P +        + P  P P+S P  
Sbjct: 362 ---PSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTP 418

Query: 192 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 242
                    P P + P       + D P P      P P++ P    P  A
Sbjct: 419 APTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDA 469

Length = 3151

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 68/274 (24%), Positives = 82/274 (29%), Gaps = 13/274 (4%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP---GPSSAPDLPGPSSAPDLPGP 86
             PS+ P  P   + P    P +A   P P     L     PS  P        P  P  
Sbjct: 189 LAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQT 248

Query: 87  SSAPDLPGPSSAPDLPGPS-SAPDLPGPS----SAPDLPGPSSAPDLP---GPSSAPDLP 138
           +S      P+ +   P  S   P  P P         L  PSS P  P     S  P LP
Sbjct: 249 ASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLP 308

Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 198
            PS A        +     P   P       AP +P     P  P P            P
Sbjct: 309 LPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPN--QSHKHPP 366

Query: 199 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
            L GPS  P +P     P    P S+     P SA   P        P  S     P  +
Sbjct: 367 HLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLT 426

Query: 259 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 292
            +  LP  +S     G  S P     +  P   G
Sbjct: 427 QSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSG 460

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 26/127 (20%), Positives = 32/127 (25%), Gaps = 5/127 (3%)

Query: 31  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLPGPSSAPDLPGP 86
           G ++  ++      P        PD      A       P P   P      S      P
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDP 682

Query: 87  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
                      AP  P P   P   G    P      +A   P  SS    P     P+ 
Sbjct: 683 VRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAPPEPEP 741

Query: 147 PGPSSAP 153
           PG   A 
Sbjct: 742 PGAEQAD 748

Length = 753

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 40  GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 97
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 98  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 149
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 49  GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 106
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 158
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 58  GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 115
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 167
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 67  GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 124
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 176
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 76  GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 133
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 185
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 85  GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 142
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 194
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 94  GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 151
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 203
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 103 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 160
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 212
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 112 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 169
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 221
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 121 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 178
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 230
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 130 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 187
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 239
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 139 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 196
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 248
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 205
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 257
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 157 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 214
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 266
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 223
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 275
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 175 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 232
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 233 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 284
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 34/113 (30%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SS 241
              S     GP+S      P+     P G + A  +   S+AP  P PS+AP    P   
Sbjct: 379 SAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDD 438

Query: 242 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP-SSAPDLPGPSSAPDLPGP 293
           AP  P  S  P    P  AP +P  S  P  P   +SA D P     P     
Sbjct: 439 APPAPPRSGIP----PRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAE 487

Length = 624

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 184 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 243
              +       ++AP     + A      ++AP      +       ++    P P+ AP
Sbjct: 385 LGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAP-----AAAPQPAPAPAPAP 439

Query: 244 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSST 296
             P P+      G  S P    PS+ P     ++      P+ AP      + 
Sbjct: 440 APPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 36/178 (20%), Positives = 53/178 (29%), Gaps = 6/178 (3%)

Query: 147 PGPSSAPDLPGPSSAPD---LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA-PDLPG 202
                AP    P+        PG  +A  +   +         +A     P +A      
Sbjct: 362 VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAAT 421

Query: 203 PSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 261
            + AP   P P +  D    ++  D P P+ A       S  D        D  G +SAP
Sbjct: 422 RAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAD-SGSASAP 480

Query: 262 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLEPKPA 319
               P  A   P P +A       +A       +         A    +P+   P PA
Sbjct: 481 ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPA 538

Length = 830

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 67/274 (24%), Positives = 79/274 (28%), Gaps = 8/274 (2%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG--PSSAP 81
           P     PG + AP  P P+ +     P  +P    P+  P  P P S    P   P   P
Sbjct: 179 PSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLP 238

Query: 82  DLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-- 138
               P         S  P  P          GP              L  PSS P  P  
Sbjct: 239 SPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFG 298

Query: 139 -GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
              S  P LP PS A        +     P   P       AP +P     P  P P   
Sbjct: 299 LAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLP 358

Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
                    P L GPS  P +P     P    P S+     P SA   P        P  
Sbjct: 359 N--QSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQ 416

Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 291
           S     P  + +  LP  +S     G  S P   
Sbjct: 417 SVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQS 450

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 29/129 (22%), Positives = 48/129 (37%), Gaps = 6/129 (4%)

Query: 13  ADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 72
           A+       + P  P+   P++AP     ++      P++A   P    A   P P +AP
Sbjct: 370 AEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAP 429

Query: 73  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP----DLPGPSSAPDLPGPSSAPDL 128
               P++AP    P++   L     A   P   + P      P  +SA   P  + A   
Sbjct: 430 AAAAPAAAPA-AAPAAVA-LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487

Query: 129 PGPSSAPDL 137
             P+   D+
Sbjct: 488 LTPTEEGDV 496

Length = 618

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 26/131 (19%), Positives = 32/131 (24%), Gaps = 6/131 (4%)

Query: 166 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 225
           G ++  ++      P        PD      A     P      P P   P      S  
Sbjct: 623 GRATVGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVP-----GPVPVGMPAHTARPSRV 677

Query: 226 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
               P           AP  P P   P   G    P      +A   P  SS    P   
Sbjct: 678 ARGDPVRPTAHHAALRAPQAPRPGGPPGGGGGLPPPPDLPA-AAGPAPCGSSLIASPTAP 736

Query: 286 SAPDLPGPSST 296
             P+ PG    
Sbjct: 737 PEPEPPGAEQA 747

Length = 753

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 29/136 (21%), Positives = 41/136 (30%), Gaps = 8/136 (5%)

Query: 10  FTEADYLPSTVTER--PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 67
           F++ D+   T +    PLE  +      P      + P    PS     P PS+ P    
Sbjct: 334 FSQLDFQLRTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAA 393

Query: 68  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 127
            ++ P           P        P P + P    P SAP L   ++ P    P   P 
Sbjct: 394 AANIPPKEPVRETATPPPVP-----PRPVAPPVPHTPESAPKLT-RAAIPVDEKPKYTPP 447

Query: 128 LPGPSSAPDLPGPSSA 143
            P       L      
Sbjct: 448 APPKEEEKALIADGDV 463

Length = 585

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 34/152 (22%), Positives = 49/152 (32%), Gaps = 5/152 (3%)

Query: 164 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 223
                S+    G +S+P              +SA   P   +AP  P PSS+P     SS
Sbjct: 1   RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-PSSSPARNTSSS 59

Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
           +           L     +     PS       PS+A  L G  +     G SS      
Sbjct: 60  SSFGLSKQRPSSLSRGRLSSRFVSPSRG----SPSAAASLNGSLATASTSGSSSPSRSRR 115

Query: 284 PSSAPDLPGPSSTVLGSYLGEAGHQKSPKGLE 315
            +S+    G   +VL         +K P  +E
Sbjct: 116 TTSSDLSSGNGPSVLSFMADVKRGKKGPSKIE 147

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 46/193 (23%), Positives = 60/193 (31%), Gaps = 9/193 (4%)

Query: 11   TEADYLPSTVTERPLEPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 69
            TE+  LP    ERP +P  P  P   P  P P      P P   P  P   +        
Sbjct: 2895 TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGE 2954

Query: 70   SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL- 128
             +  +P P     +PG  + P    P  AP    P+S+       S   +   +S+  L 
Sbjct: 2955 PSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALH 3014

Query: 129  ----PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLP 183
                P P S      P    D     +       S   DL      P  P  P +    P
Sbjct: 3015 EETDPPPVSLKQTLWPPD--DTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDP 3072

Query: 184  GPSSAPDLPGPSS 196
                A     PSS
Sbjct: 3073 ATPEAGARESPSS 3085

Length = 3151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	448
KOG3546|consensus	1167		99.95
KOG3546|consensus	1167		99.93
smart00038	232	COLFI Fibrillar collagens C-terminal domain. Found	99.87
PF01410	214	COLFI: Fibrillar collagen C-terminal domain; Inter	99.83

>KOG3546|consensus

Probab=99.95  E-value=2e-25  Score=234.92  Aligned_cols=15  Identities=20%  Similarity=0.239  Sum_probs=7.8

Q ss_pred             eeeeEeccCCceeeh
Q psy16323        357 LYILTVEDDTVILLF  371 (448)
Q Consensus       357 ~~~~~vrkDqk~~WF  371 (448)
                      +-.++.+|+|.-+.|
T Consensus       984 ypmllaek~~pllhl  998 (1167)
T KOG3546|consen  984 YPMLLAEKPQPLLHL  998 (1167)
T ss_pred             ccccCCCCcchhhhh
Confidence            344455555555554

>KOG3546|consensus

Probab=99.93  E-value=1.4e-23  Score=221.15  Aligned_cols=28  Identities=18%  Similarity=0.155  Sum_probs=14.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCccccccccC
Q psy16323        276 SSAPDLPGPSSAPDLPGPSSTVLGSYLG  303 (448)
Q Consensus       276 ~~~~g~p~~~~~~~~p~~~~~~l~sl~g  303 (448)
                      |++-|.-++.+|.|.+|.-+-..+++++
T Consensus       808 kg~~gd~g~kge~ge~g~g~f~~s~~pg  835 (1167)
T KOG3546|consen  808 KGDRGDAGQKGERGEPGGGGFFGSSLPG  835 (1167)
T ss_pred             cccccccccccccCCCCCCceecCCCCC
Confidence            4445555555555566544444555543

>smart00038 COLFI Fibrillar collagens C-terminal domain

Probab=99.87  E-value=5.1e-23  Score=199.95  Aligned_cols=133  Identities=27%  Similarity=0.287  Sum_probs=112.5

Q ss_pred             cccccCCCCCCCCCCCCCCCCCceeeee-------------------------ccchhHHHhhhhhhccceeeeecceeE
Q psy16323        298 LGSYLGEAGHQKSPKGLEPKPAQISFVL-------------------------NIFANFHQTLRFLHFSCTSLVVTRATV  352 (448)
Q Consensus       298 l~sl~g~~g~~~sp~g~~~~P~~~~~vi-------------------------~~~~n~~~~~rfv~~~c~~i~~~r~tv  352 (448)
                      |+++..+++.++.|.|++.+|+++|.+|                         .+||||+..     ++|  |+.....+
T Consensus         8 l~~l~~~i~~i~~P~Gt~~~PartC~dl~~~~p~~~~G~YwIdPn~G~~~Da~~V~C~~~~g-----~Tc--v~p~~~~~   80 (232)
T smart00038        8 LKSLNNQIEQLKSPTGTKDNPARTCKDLKLCHPEFKDGEYWVDPNQGCIRDAIKVFCNFETG-----ETC--VSPSPSSI   80 (232)
T ss_pred             HHHHHhHHhcccCCCCCCCCCcchhhHHHhcCCCCCCCCEEECCCCCCCCCCeEEEEEeecC-----CeE--Eccccccc
Confidence            6788889999999999999999999883                         455666553     777  66666677


Q ss_pred             eeceeeeeEeccCCceeehhhhhCCCCceeccCCCCCCCCCCCCchhHHHHHHHhhcCCCccee---ecccccCccCCCC
Q psy16323        353 VKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYT---TNSFAPMDRWTHP  429 (448)
Q Consensus       353 ~~~~~~~~~vrkDqk~~WF~Et~~~g~qf~Y~~~~~~~~~~~~d~~vQL~FLrLlS~~A~Q~iT---~nS~a~~d~~~~~  429 (448)
                      ...+||..    +.+++||+|.|+.+++|.|.+....+     +.+|||+||||||++|+|+||   +||++|+|..+.+
T Consensus        81 ~~~~~~~~----~~~~~wf~e~~~~g~~f~Y~~~~~~~-----~~~vQltfLrllS~~A~Q~iTy~C~ns~a~~d~~~~~  151 (232)
T smart00038       81 PRKTWYSG----KSKHVWFGETMNGGFQFSYGDSEGPP-----VGVVQLTFLRLLSTSAHQNITYHCKNSVAYMDEATGN  151 (232)
T ss_pred             cccccccC----CCCCceeeeeccCCeEEEEecCCCCc-----cchHHHHHHHHhcccceeEEEEEEEcceeEEeccccc
Confidence            88888852    35899999999999999997765422     468999999999999999999   5999999998865


Q ss_pred             -CCceEEeccCccccccc
Q psy16323        430 -SKAATFLGLLDEDTDEE  446 (448)
Q Consensus       430 -~ka~~l~g~nd~e~~~~  446 (448)
                       +++|+|+++||+||+|+
T Consensus       152 ~~~al~l~g~n~~el~~~  169 (232)
T smart00038      152 LKKALRLRGSNDVELSAE  169 (232)
T ss_pred             ccccEEEEecCCCeEecC
Confidence             89999999999999987

Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.

>PF01410 COLFI: Fibrillar collagen C-terminal domain; InterPro: IPR000885 Collagens contain a large number of globular domains in between the regions of triple helical repeats IPR008160 from INTERPRO

Probab=99.83  E-value=3e-21  Score=185.51  Aligned_cols=123  Identities=26%  Similarity=0.296  Sum_probs=103.3

Q ss_pred             CCCCCCCCCCCCceeee-------------------------eccchhHHHhhhhhhccceeeeecceeEeeceeeeeEe
Q psy16323        308 QKSPKGLEPKPAQISFV-------------------------LNIFANFHQTLRFLHFSCTSLVVTRATVVKLPLYILTV  362 (448)
Q Consensus       308 ~~sp~g~~~~P~~~~~v-------------------------i~~~~n~~~~~rfv~~~c~~i~~~r~tv~~~~~~~~~v  362 (448)
                      |++|.|++.+|+++|.+                         |.+||||+..     +||  |+.....+....||.   
T Consensus         1 ~k~P~Gt~~~PArtC~dL~~~~p~~~dG~YwIDPN~G~~~Dai~v~C~~~~g-----~TC--i~p~~~~~~~~~~~~---   70 (214)
T PF01410_consen    1 IKKPDGTKENPARTCRDLKLCHPELPDGEYWIDPNGGSPRDAIEVFCNFTTG-----ETC--ISPDQSSVPSKSWYK---   70 (214)
T ss_pred             CCCCCCCccchhhhHHHHHhhCcccCCCcEeECCCCCCCCCcEEEEEeeeec-----eEE--EeccCcccccccccC---
Confidence            57899999999999988                         4677888873     889  666666666666776   


Q ss_pred             ccCCceeehhhhhCCCCceeccCCCCCCCCCCCCchhHHHHHHHhhcCCCccee---ecccccCccCCCC-CCceEEecc
Q psy16323        363 EDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYT---TNSFAPMDRWTHP-SKAATFLGL  438 (448)
Q Consensus       363 rkDqk~~WF~Et~~~g~qf~Y~~~~~~~~~~~~d~~vQL~FLrLlS~~A~Q~iT---~nS~a~~d~~~~~-~ka~~l~g~  438 (448)
                       ...++.||++.+..+++|.|......+     ..+|||+||||||++|+|+||   +|+++|+|+.+.+ +++|+|+++
T Consensus        71 -~~~~~~w~~~~~~g~~~f~Y~~~~~~~-----~~~vQL~FLrLlS~~A~Q~iTy~C~ns~~~~d~~~~~~~~ai~~~g~  144 (214)
T PF01410_consen   71 -GSPKGHWFSESMNGGFQFSYSISDGSP-----VGVVQLNFLRLLSSEARQNITYHCKNSVAWYDQSTGSYNKAIRFRGD  144 (214)
T ss_pred             -CCCccceeeeecccccceeecCCcCCc-----cchHHHHHHHHHhhhheeeEEEEcCCCccccccccCCcccceEEEcC
Confidence             223899999999999999998775544     458999999999999999999   5899999998855 899999999


Q ss_pred             Cccccccc
Q psy16323        439 LDEDTDEE  446 (448)
Q Consensus       439 nd~e~~~~  446 (448)
                      ||+|++++
T Consensus       145 n~~~~~~~  152 (214)
T PF01410_consen  145 NDEELSYD  152 (214)
T ss_pred             CCCEEecC
Confidence            99999987

These domains are involved in binding diverse substrates. One of these domains is found at the C terminus of fibrillar collagens. The exact function of this domain is unknown.; GO: 0005201 extracellular matrix structural constituent, 0005581 collagen

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	448
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-14
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	8e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-13
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	7e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	9e-12
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	4e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-11
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-10
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-10
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	5e-08
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	1e-06
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	2e-04
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-14
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-13
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	5e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	6e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	9e-12
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	3e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	7e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-11
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	1e-10
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-10
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	8e-08
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	4e-07
1y0f_B	1026	Collagen I alpha 2; native, in SITU, triple-helix,	2e-04
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-13
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-11
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-11
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-10
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	3e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	7e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	7e-04

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 73.2 bits (180), Expect = 7e-14
 Identities = 71/270 (26%), Positives = 88/270 (32%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P E   PG +  P   G + +P  PGP      PGP+     PGP+  P   G +     
Sbjct: 361 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGF 420

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PGP  A   PG +    +PGP  A    G        GP       G        G    
Sbjct: 421 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
             LPGP+  P   G      +PG   AP   G       PG       PGP+      G 
Sbjct: 481 QGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGA 540

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                  G + AP  PG   AP L G        G        G +      G      +
Sbjct: 541 PGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGV 600

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G +     PGP+ AP   G +      GP
Sbjct: 601 RGLTGPIGPPGPAGAPGDKGEAGPSGPAGP 630

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 70/271 (25%), Positives = 87/271 (32%)

Query: 23  RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
               P   G + +P  PGP      PGP+     PGP+  P   G +     PGP  A  
Sbjct: 369 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAG 428

Query: 83  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
            PG +    +PGP  A    G        GP       G        G      LPGP+ 
Sbjct: 429 EPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAG 488

Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
            P   G      +PG   AP   G       PG       PGP+      G        G
Sbjct: 489 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKG 548

Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
            + AP  PG   AP L G        G        G +      G      + G +    
Sbjct: 549 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIG 608

Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            PGP+ AP   G +      GP+ A   PG 
Sbjct: 609 PPGPAGAPGDKGEAGPSGPAGPTGARGAPGD 639

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 72/268 (26%), Positives = 85/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PGPS  P  PG    P   G   A  + GP       G        G       PG
Sbjct: 309 ARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPG 368

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            +  P   G + +P  PGP      PGP+     PGP+  P   G +     PGP  A  
Sbjct: 369 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAG 428

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG +    +PGP  A    G        GP       G        G      LPGP+ 
Sbjct: 429 EPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAG 488

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G      +PG   AP   G       PG       PGP+      G        G
Sbjct: 489 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKG 548

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            + AP  PG   AP L G        G 
Sbjct: 549 DAGAPGAPGSQGAPGLQGMPGERGAAGL 576

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 67/268 (25%), Positives = 81/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G   A  + GP       G        G       PG +  P   G + +P  PG
Sbjct: 327 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPG 386

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P      PGP+     PGP+  P   G +     PGP  A   PG +    +PGP  A  
Sbjct: 387 PDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVG 446

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G        GP       G        G      LPGP+  P   G      +PG   
Sbjct: 447 PAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG 506

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           AP   G       PG       PGP+      G        G + AP  PG   AP L G
Sbjct: 507 APGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 566

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   G        G +      G 
Sbjct: 567 MPGERGAAGLPGPKGDRGDAGPKGADGA 594

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 73/264 (27%), Positives = 86/264 (32%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G   A   PGPS  P  PG    P   G   A  + GP       G        G    
Sbjct: 304 EGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGE 363

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PG +  P   G + +P  PGP      PGP+     PGP+  P   G +     PGP
Sbjct: 364 AGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGP 423

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
             A   PG +    +PGP  A    G        GP       G        G      L
Sbjct: 424 KGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGL 483

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PGP+  P   G      +PG   AP   G       PG       PGP+      G    
Sbjct: 484 PGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGN 543

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G + AP  PG   AP L G 
Sbjct: 544 DGAKGDAGAPGAPGSQGAPGLQGM 567

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 72/268 (26%), Positives = 87/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P  PGP      PGP+     PGP+  P   G +     PGP  A   PG +    +PG
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 440

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P  A    G        GP       G        G      LPGP+  P   G      
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG 500

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
           +PG   AP   G       PG       PGP+      G        G + AP  PG   
Sbjct: 501 VPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG 560

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           AP L G        G        G +      G      + G +     PGP+ AP   G
Sbjct: 561 APGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKG 620

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +      GP+ A   PG    P  PGP
Sbjct: 621 EAGPSGPAGPTGARGAPGDRGEPGPPGP 648

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 71/265 (26%), Positives = 85/265 (32%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
           + GP       G   A   PGPS  P  PG    P   G   A  + GP       G   
Sbjct: 294 VQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPG 353

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                G       PG +  P   G + +P  PGP      PGP+     PGP+  P   G
Sbjct: 354 PAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARG 413

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
            +     PGP  A   PG +    +PGP  A    G        GP       G      
Sbjct: 414 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQG 473

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             G      LPGP+  P   G      +PG   AP   G       PG       PGP+ 
Sbjct: 474 PAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAG 533

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
                G        G + AP  PG 
Sbjct: 534 PRGANGAPGNDGAKGDAGAPGAPGS 558

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 68/265 (25%), Positives = 81/265 (30%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
            PG    P   G   A  + GP       G        G       PG +  P   G + 
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 380

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
           +P  PGP      PGP+     PGP+  P   G +     PGP  A   PG +    +PG
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 440

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
           P  A    G        GP       G        G      LPGP+  P   G      
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG 500

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
           +PG   AP   G       PG       PGP+      G        G + AP  PG   
Sbjct: 501 VPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQG 560

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
           AP L G        G        G 
Sbjct: 561 APGLQGMPGERGAAGLPGPKGDRGD 585

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 66/270 (24%), Positives = 81/270 (30%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P    + GP       G        G       PG +  P   G + +P  PGP      
Sbjct: 334 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGP 393

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PGP+     PGP+  P   G +     PGP  A   PG +    +PGP  A    G    
Sbjct: 394 PGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE 453

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               GP       G        G      LPGP+  P   G      +PG   AP   G 
Sbjct: 454 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA 513

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                 PG       PGP+      G        G + AP  PG   AP L G       
Sbjct: 514 RGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA 573

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G        G +      G      + G 
Sbjct: 574 AGLPGPKGDRGDAGPKGADGAPGKDGVRGL 603

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 66/264 (25%), Positives = 81/264 (30%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G        G       PG +  P   G + +P  PGP      PGP+     PGP+  
Sbjct: 349 RGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGP 408

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   G +     PGP  A   PG +    +PGP  A    G        GP       G 
Sbjct: 409 PGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGE 468

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G      LPGP+  P   G      +PG   AP   G       PG       
Sbjct: 469 RGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGP 528

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PGP+      G        G + AP  PG   AP L G        G        G +  
Sbjct: 529 PGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGP 588

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G      + G +     PGP
Sbjct: 589 KGADGAPGKDGVRGLTGPIGPPGP 612

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 71/268 (26%), Positives = 84/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           EP  PG        G      + GP       G   A   PGPS  P  PG    P   G
Sbjct: 273 EPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRG 332

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
              A  + GP       G        G       PG +  P   G + +P  PGP     
Sbjct: 333 FPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTG 392

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP+     PGP+  P   G +     PGP  A   PG +    +PGP  A    G   
Sbjct: 393 PPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 452

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                GP       G        G      LPGP+  P   G      +PG   AP   G
Sbjct: 453 EAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSG 512

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PG       PGP+      G 
Sbjct: 513 ARGERGFPGERGVEGPPGPAGPRGANGA 540

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 75/270 (27%), Positives = 86/270 (31%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  G   A   PG   A   PG + AP  PG        GPS AP   G S  P  
Sbjct: 217 AGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGA 276

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PG        G      + GP       G   A   PGPS  P  PG    P   G   A
Sbjct: 277 PGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGA 336

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
             + GP       G        G       PG +  P   G + +P  PGP      PGP
Sbjct: 337 DGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGP 396

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           +     PGP+  P   G +     PGP  A   PG +    +PGP  A    G       
Sbjct: 397 AGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGA 456

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP       G        G      LPGP
Sbjct: 457 QGPPGPAGPAGERGEQGPAGSPGFQGLPGP 486

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 68/268 (25%), Positives = 82/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E  +PGP  A    G        GP       G        G      LPGP+  P   G
Sbjct: 435 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG 494

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                 +PG   AP   G       PG       PGP+      G        G + AP 
Sbjct: 495 KPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPG 554

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG   AP L G        G        G +      G      + G +     PGP+ 
Sbjct: 555 APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAG 614

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           AP   G +      GP+ A   PG    P  PGP+     PG    P   G        G
Sbjct: 615 APGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKG 674

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +  P   GP+  P   G   AP   G 
Sbjct: 675 DAGPPGPAGPAGPPGPIGNVGAPGPKGA 702

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 67/270 (24%), Positives = 82/270 (30%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
             E    GP       G        G      LPGP+  P   G      +PG   AP  
Sbjct: 451 DGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGP 510

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G       PG       PGP+      G        G + AP  PG   AP L G    
Sbjct: 511 SGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGE 570

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               G        G +      G      + G +     PGP+ AP   G +      GP
Sbjct: 571 RGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGP 630

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           + A   PG    P  PGP+     PG    P   G        G +  P   GP+  P  
Sbjct: 631 TGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGP 690

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G   AP   G   +   PG +  P   G 
Sbjct: 691 IGNVGAPGPKGARGSAGPPGATGFPGAAGR 720

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 70/268 (26%), Positives = 85/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E   PGP+  P   G +     PGP  A   PG +    +PGP  A    G        G
Sbjct: 399 EDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQG 458

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P       G        G      LPGP+  P   G      +PG   AP   G      
Sbjct: 459 PPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERG 518

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG       PGP+      G        G + AP  PG   AP L G        G   
Sbjct: 519 FPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG 578

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G +      G      + G +     PGP+ AP   G +      GP+ A   PG
Sbjct: 579 PKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPG 638

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P  PGP+     PG    P   G 
Sbjct: 639 DRGEPGPPGPAGFAGPPGADGQPGAKGE 666

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 68/268 (25%), Positives = 82/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           +    G      + GP       G   A   PGPS  P  PG    P   G   A  + G
Sbjct: 282 DTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAG 341

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P       G        G       PG +  P   G + +P  PGP      PGP+    
Sbjct: 342 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDG 401

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP+  P   G +     PGP  A   PG +    +PGP  A    G        GP  
Sbjct: 402 RPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPG 461

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G        G      LPGP+  P   G      +PG   AP   G       PG
Sbjct: 462 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 521

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PGP+      G        G 
Sbjct: 522 ERGVEGPPGPAGPRGANGAPGNDGAKGD 549

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 77/268 (28%), Positives = 89/268 (33%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           EP  PGP+ A    G   A   PG   A   PG + AP  PG        GPS AP   G
Sbjct: 210 EPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKG 269

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            S  P  PG        G      + GP       G   A   PGPS  P  PG    P 
Sbjct: 270 NSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPG 329

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G   A  + GP       G        G       PG +  P   G + +P  PGP  
Sbjct: 330 SRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDG 389

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PGP+     PGP+  P   G +     PGP  A   PG +    +PGP  A    G
Sbjct: 390 KTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG 449

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   GP       G        G 
Sbjct: 450 KDGEAGAQGPPGPAGPAGERGEQGPAGS 477

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 68/269 (25%), Positives = 83/269 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PGP  A   PG +    +PGP  A    G        GP       G        G
Sbjct: 417 VMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG 476

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                 LPGP+  P   G      +PG   AP   G       PG       PGP+    
Sbjct: 477 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRG 536

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G        G + AP  PG   AP L G        G        G +      G   
Sbjct: 537 ANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPG 596

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
              + G +     PGP+ AP   G +      GP+ A   PG    P  PGP+     PG
Sbjct: 597 KDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPG 656

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
               P   G        G +  P   GP+
Sbjct: 657 ADGQPGAKGEPGDAGAKGDAGPPGPAGPA 685

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 74/268 (27%), Positives = 86/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P  PG        GPS AP   G S  P  PG        G      + GP       G
Sbjct: 246 APGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEG 305

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
              A   PGPS  P  PG    P   G   A  + GP       G        G      
Sbjct: 306 KRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAG 365

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG +  P   G + +P  PGP      PGP+     PGP+  P   G +     PGP  
Sbjct: 366 RPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKG 425

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           A   PG +    +PGP  A    G        GP       G        G      LPG
Sbjct: 426 AAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPG 485

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P+  P   G      +PG   AP   G 
Sbjct: 486 PAGPPGEAGKPGEQGVPGDLGAPGPSGA 513

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 76/270 (28%), Positives = 88/270 (32%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P     PG   A   PG + AP  PG        GPS AP   G S  P  PG       
Sbjct: 226 PGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGA 285

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G      + GP       G   A   PGPS  P  PG    P   G   A  + GP   
Sbjct: 286 KGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGP 345

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               G        G       PG +  P   G + +P  PGP      PGP+     PGP
Sbjct: 346 AGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGP 405

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           +  P   G +     PGP  A   PG +    +PGP  A    G        GP      
Sbjct: 406 AGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGP 465

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G        G      LPGP+  P   G 
Sbjct: 466 AGERGEQGPAGSPGFQGLPGPAGPPGEAGK 495

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.5 bits (173), Expect = 5e-13
 Identities = 72/268 (26%), Positives = 84/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G S  P  PG        G      + GP       G   A   PGPS  P  PG
Sbjct: 264 APGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPG 323

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   G   A  + GP       G        G       PG +  P   G + +P 
Sbjct: 324 ERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG 383

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP      PGP+     PGP+  P   G +     PGP  A   PG +    +PGP  
Sbjct: 384 SPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPG 443

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           A    G        GP       G        G      LPGP+  P   G      +PG
Sbjct: 444 AVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPG 503

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
              AP   G       PG       PGP
Sbjct: 504 DLGAPGPSGARGERGFPGERGVEGPPGP 531

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 67/268 (25%), Positives = 81/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G +     PGP  A   PG +    +PGP  A    G        GP       G
Sbjct: 408 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG 467

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G      LPGP+  P   G      +PG   AP   G       PG      
Sbjct: 468 ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEG 527

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP+      G        G + AP  PG   AP L G        G        G + 
Sbjct: 528 PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAG 587

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G      + G +     PGP+ AP   G +      GP+ A   PG    P  PG
Sbjct: 588 PKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPG 647

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P+     PG    P   G        G 
Sbjct: 648 PAGFAGPPGADGQPGAKGEPGDAGAKGD 675

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 74/264 (28%), Positives = 87/264 (32%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
           PG + AP  PG        GPS AP   G S  P  PG        G      + GP   
Sbjct: 241 PGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGP 300

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
               G   A   PGPS  P  PG    P   G   A  + GP       G        G 
Sbjct: 301 AGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS 360

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                 PG +  P   G + +P  PGP      PGP+     PGP+  P   G +     
Sbjct: 361 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGF 420

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PGP  A   PG +    +PGP  A    G        GP       G        G    
Sbjct: 421 PGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGF 480

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
             LPGP+  P   G      +PG 
Sbjct: 481 QGLPGPAGPPGEAGKPGEQGVPGD 504

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 71/268 (26%), Positives = 78/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G    P   GP  A   PG   A    G   AP   G      +PG   A  LPG
Sbjct: 519 FPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPG 578

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P       GP  A   PG      L GP   P   G        GPS      G   AP 
Sbjct: 579 PKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPG 638

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G    P   G +  P   G   A   PG + A    GP       GP       G   
Sbjct: 639 DRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPG 698

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G +  P   G   A    GP       GP   P   G   +    G +     PG
Sbjct: 699 PKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPG 758

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P  PGP+     PG       PG 
Sbjct: 759 EVGPPGPPGPAGEKGAPGADGPAGAPGT 786

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 76/269 (28%), Positives = 88/269 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                G    P  PGP+ A    G   A   PG   A   PG + AP  PG        G
Sbjct: 201 SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEG 260

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           PS AP   G S  P  PG        G      + GP       G   A   PGPS  P 
Sbjct: 261 PSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPG 320

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG    P   G   A  + GP       G        G       PG +  P   G + 
Sbjct: 321 PPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTG 380

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           +P  PGP      PGP+     PGP+  P   G +     PGP  A   PG +    +PG
Sbjct: 381 SPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPG 440

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
           P  A    G        GP       G  
Sbjct: 441 PPGAVGPAGKDGEAGAQGPPGPAGPAGER 469

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 83/268 (30%), Positives = 90/268 (33%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E    GP+      G       PGP       GP  A   PG    P   G       PG
Sbjct: 621 EAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPG 680

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+     PGP      PGP  A    GP  A   PG +     PGPS     PGP     
Sbjct: 681 PAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAG 740

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G        GP+  P   GP   P   G   AP   GP+ AP  PGP       G   
Sbjct: 741 KEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVG 800

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G    P LPGPS  P   GPS A    GP      PG +  P   G   AP   G
Sbjct: 801 LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEG 860

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PG        GP+  P  PG 
Sbjct: 861 SPGRDGSPGAKGDRGETGPAGPPGAPGA 888

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 73/268 (27%), Positives = 85/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                GPS AP   G S  P  PG        G      + GP       G   A   PG
Sbjct: 255 PSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPG 314

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           PS  P  PG    P   G   A  + GP       G        G       PG +  P 
Sbjct: 315 PSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPG 374

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G + +P  PGP      PGP+     PGP+  P   G +     PGP  A   PG + 
Sbjct: 375 AKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGEPGKAG 434

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
              +PGP  A    G        GP       G        G      LPGP+  P   G
Sbjct: 435 ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG 494

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                 +PG   AP   G       PG 
Sbjct: 495 KPGEQGVPGDLGAPGPSGARGERGFPGE 522

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 69/268 (25%), Positives = 85/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E  +PG   AP   G       PG       PGP+      G        G + AP  PG
Sbjct: 498 EQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPG 557

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
              AP L G        G        G +      G      + G +     PGP+ AP 
Sbjct: 558 SQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPG 617

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G +      GP+ A   PG    P  PGP+     PG    P   G        G + 
Sbjct: 618 DKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 677

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   GP+  P   G   AP   G   +   PG +  P   G    P   G +  P  PG
Sbjct: 678 PPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPG 737

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P+      GP       G       PGP
Sbjct: 738 PAGKEGSKGPRGETGPAGRPGEVGPPGP 765

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 80/268 (29%), Positives = 87/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           +    G   AP   G        GP      PG        GP+      G       PG
Sbjct: 585 DAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPG 644

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P       GP  A   PG    P   G       PGP+     PGP      PGP  A  
Sbjct: 645 PPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARG 704

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP  A   PG +     PGPS     PGP       G        GP+  P   GP  
Sbjct: 705 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPG 764

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G   AP   GP+ AP  PGP       G    P   G    P LPGPS  P   G
Sbjct: 765 PPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 824

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           PS A    GP      PG +  P   G 
Sbjct: 825 PSGASGERGPPGPMGPPGLAGPPGESGR 852

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 77/270 (28%), Positives = 90/270 (33%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
             E    G   +    G    P  PGP+ A    G   A   PG   A   PG + AP  
Sbjct: 190 KGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGF 249

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PG        GPS AP   G S  P  PG        G      + GP       G   A
Sbjct: 250 PGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGA 309

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
              PGPS  P  PG    P   G   A  + GP       G        G       PG 
Sbjct: 310 RGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGE 369

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           +  P   G + +P  PGP      PGP+     PGP+  P   G +     PGP  A   
Sbjct: 370 AGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPGPKGAAGE 429

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           PG +    +PGP  A    G        GP
Sbjct: 430 PGKAGERGVPGPPGAVGPAGKDGEAGAQGP 459

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 71/270 (26%), Positives = 88/270 (32%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P    LPGP+  P   G      +PG   AP   G       PG       PGP+     
Sbjct: 478 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGA 537

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G        G + AP  PG   AP L G        G        G +      G    
Sbjct: 538 NGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGK 597

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
             + G +     PGP+ AP   G +      GP+ A   PG    P  PGP+     PG 
Sbjct: 598 DGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGA 657

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
              P   G        G +  P   GP+  P   G   AP   G   +   PG +  P  
Sbjct: 658 DGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGA 717

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G    P   G +  P  PGP+      GP
Sbjct: 718 AGRVGPPGPSGNAGPPGPPGPAGKEGSKGP 747

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.8 bits (171), Expect = 8e-13
 Identities = 67/270 (24%), Positives = 82/270 (30%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P      G        G      LPGP+  P   G      +PG   AP   G       
Sbjct: 460 PGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGF 519

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PG       PGP+      G        G + AP  PG   AP L G        G    
Sbjct: 520 PGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP 579

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               G +      G      + G +     PGP+ AP   G +      GP+ A   PG 
Sbjct: 580 KGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGD 639

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
              P  PGP+     PG    P   G        G +  P   GP+  P   G   AP  
Sbjct: 640 RGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGP 699

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G   +   PG +  P   G    P   G 
Sbjct: 700 KGARGSAGPPGATGFPGAAGRVGPPGPSGN 729

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 81/270 (30%), Positives = 87/270 (32%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
              P   G        GP      PG        GP+      G       PGP      
Sbjct: 592 DGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGF 651

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            GP  A   PG    P   G       PGP+     PGP      PGP  A    GP  A
Sbjct: 652 AGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGA 711

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
              PG +     PGPS     PGP       G        GP+  P   GP   P   G 
Sbjct: 712 TGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGE 771

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
             AP   GP+ AP  PGP       G    P   G    P LPGPS  P   GPS A   
Sbjct: 772 KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGE 831

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP      PG +  P   G   AP   G 
Sbjct: 832 RGPPGPMGPPGLAGPPGESGREGAPGAEGS 861

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 80/268 (29%), Positives = 86/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G +  P   G        G   AP   G        GP      PG        G
Sbjct: 567 MPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSG 626

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+      G       PGP       GP  A   PG    P   G       PGP+    
Sbjct: 627 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAG 686

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP      PGP  A    GP  A   PG +     PGPS     PGP       G   
Sbjct: 687 PPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKG 746

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                GP+  P   GP   P   G   AP   GP+ AP  PGP       G    P   G
Sbjct: 747 PRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRG 806

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P LPGPS  P   GPS A    GP
Sbjct: 807 ERGFPGLPGPSGEPGKQGPSGASGERGP 834

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 81/268 (30%), Positives = 87/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                GP      PG        GP+      G       PGP       GP  A   PG
Sbjct: 603 LTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPG 662

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   G       PGP+     PGP      PGP  A    GP  A   PG +    
Sbjct: 663 AKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVG 722

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGPS     PGP       G        GP+  P   GP   P   G   AP   GP+ 
Sbjct: 723 PPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAG 782

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           AP  PGP       G    P   G    P LPGPS  P   GPS A    GP      PG
Sbjct: 783 APGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPG 842

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +  P   G   AP   G       PG 
Sbjct: 843 LAGPPGESGREGAPGAEGSPGRDGSPGA 870

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 80/267 (29%), Positives = 85/267 (31%)

Query: 27  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
           P   G        G   AP   G        GP      PG        GP+      G 
Sbjct: 577 PGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGA 636

Query: 87  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
                 PGP       GP  A   PG    P   G       PGP+     PGP      
Sbjct: 637 PGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGA 696

Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
           PGP  A    GP  A   PG +     PGPS     PGP       G        GP+  
Sbjct: 697 PGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGR 756

Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
           P   GP   P   G   AP   GP+ AP  PGP       G    P   G    P LPGP
Sbjct: 757 PGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP 816

Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           S  P   GPS A    GP      PG 
Sbjct: 817 SGEPGKQGPSGASGERGPPGPMGPPGL 843

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 9e-13
 Identities = 67/268 (25%), Positives = 83/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G      +PG   AP   G       PG       PGP+      G        G
Sbjct: 489 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKG 548

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            + AP  PG   AP L G        G        G +      G      + G +    
Sbjct: 549 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIG 608

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP+ AP   G +      GP+ A   PG    P  PGP+     PG    P   G   
Sbjct: 609 PPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 668

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G +  P   GP+  P   G   AP   G   +   PG +  P   G    P   G
Sbjct: 669 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSG 728

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +  P  PGP+      GP       G 
Sbjct: 729 NAGPPGPPGPAGKEGSKGPRGETGPAGR 756

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 81/264 (30%), Positives = 87/264 (32%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
           PG        GP+      G       PGP       GP  A   PG    P   G    
Sbjct: 616 PGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGD 675

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PGP+     PGP      PGP  A    GP  A   PG +     PGPS     PGP
Sbjct: 676 AGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGP 735

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G        GP+  P   GP   P   G   AP   GP+ AP  PGP      
Sbjct: 736 PGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQ 795

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G    P   G    P LPGPS  P   GPS A    GP      PG +  P   G   A
Sbjct: 796 RGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGA 855

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
           P   G       PG        GP
Sbjct: 856 PGAEGSPGRDGSPGAKGDRGETGP 879

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 76/268 (28%), Positives = 84/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           +   PG   +   PG    P   G +  P   G        G   AP   G        G
Sbjct: 549 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIG 608

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P      PG        GP+      G       PGP       GP  A   PG    P 
Sbjct: 609 PPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 668

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G       PGP+     PGP      PGP  A    GP  A   PG +     PGPS 
Sbjct: 669 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSG 728

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PGP       G        GP+  P   GP   P   G   AP   GP+ AP  PG
Sbjct: 729 NAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPG 788

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P       G    P   G    P LPGP
Sbjct: 789 PQGIAGQRGVVGLPGQRGERGFPGLPGP 816

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 79/269 (29%), Positives = 85/269 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PG    P   G +  P   G        G   AP   G        GP      PG
Sbjct: 558 SQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPG 617

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   GP+      G       PGP       GP  A   PG    P   G      
Sbjct: 618 DKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAG 677

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP+     PGP      PGP  A    GP  A   PG +     PGPS     PGP  
Sbjct: 678 PPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPG 737

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G        GP+  P   GP   P   G   AP   GP+ AP  PGP       G
Sbjct: 738 PAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRG 797

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
               P   G    P LPGPS  P   GPS
Sbjct: 798 VVGLPGQRGERGFPGLPGPSGEPGKQGPS 826

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 76/264 (28%), Positives = 89/264 (33%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GP   P   G        G   +    G    P  PGP+ A    G   A   PG   A
Sbjct: 178 TGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGA 237

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PG + AP  PG        GPS AP   G S  P  PG        G      + GP
Sbjct: 238 NGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGP 297

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G   A   PGPS  P  PG    P   G   A  + GP       G       
Sbjct: 298 PGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGP 357

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G       PG +  P   G + +P  PGP      PGP+     PGP+  P   G +  
Sbjct: 358 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGV 417

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
              PGP  A   PG +    +PGP
Sbjct: 418 MGFPGPKGAAGEPGKAGERGVPGP 441

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 84/270 (31%), Positives = 90/270 (33%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  G       PGP       GP  A   PG    P   G       PGP+     
Sbjct: 628 AGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGP 687

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PGP      PGP  A    GP  A   PG +     PGPS     PGP       G    
Sbjct: 688 PGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGP 747

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               GP+  P   GP   P   G   AP   GP+ AP  PGP       G    P   G 
Sbjct: 748 RGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE 807

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
              P LPGPS  P   GPS A    GP      PG +  P   G   AP   G       
Sbjct: 808 RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGS 867

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           PG        GP+  P  PG   AP   GP
Sbjct: 868 PGAKGDRGETGPAGPPGAPGAPGAPGPVGP 897

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 70/269 (26%), Positives = 87/269 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E    G      LPGP+  P   G      +PG   AP   G       PG       PG
Sbjct: 471 EQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVEGPPG 530

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+      G        G + AP  PG   AP L G        G        G +    
Sbjct: 531 PAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKG 590

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G      + G +     PGP+ AP   G +      GP+ A   PG    P  PGP+ 
Sbjct: 591 ADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAG 650

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PG    P   G        G +  P   GP+  P   G   AP   G   +   PG
Sbjct: 651 FAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPG 710

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
            +  P   G    P   G +  P  PGP+
Sbjct: 711 ATGFPGAAGRVGPPGPSGNAGPPGPPGPA 739

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 85/270 (31%), Positives = 93/270 (34%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P +   PGP       GP  A   PG    P   G       PGP+     PGP      
Sbjct: 637 PGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGA 696

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PGP  A    GP  A   PG +     PGPS     PGP       G        GP+  
Sbjct: 697 PGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGR 756

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P   GP   P   G   AP   GP+ AP  PGP       G    P   G    P LPGP
Sbjct: 757 PGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP 816

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           S  P   GPS A    GP      PG +  P   G   AP   G       PG       
Sbjct: 817 SGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 876

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP+  P  PG   AP   GP+      G 
Sbjct: 877 TGPAGPPGAPGAPGAPGPVGPAGKSGDRGE 906

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 76/268 (28%), Positives = 89/268 (33%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G        G   +    G    P  PGP+ A    G   A   PG   A   PG
Sbjct: 183 FPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPG 242

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            + AP  PG        GPS AP   G S  P  PG        G      + GP     
Sbjct: 243 IAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAG 302

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G   A   PGPS  P  PG    P   G   A  + GP       G        G   
Sbjct: 303 EEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPG 362

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PG +  P   G + +P  PGP      PGP+     PGP+  P   G +     PG
Sbjct: 363 EAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPGPAGPPGARGQAGVMGFPG 422

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P  A   PG +    +PGP  A    G 
Sbjct: 423 PKGAAGEPGKAGERGVPGPPGAVGPAGK 450

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 80/268 (29%), Positives = 90/268 (33%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           +   PGP+     PGP      PGP  A    GP  A   PG +     PGPS     PG
Sbjct: 675 DAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPG 734

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P       G        GP+  P   GP   P   G   AP   GP+ AP  PGP     
Sbjct: 735 PPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAG 794

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G    P   G    P LPGPS  P   GPS A    GP      PG +  P   G   
Sbjct: 795 QRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREG 854

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           AP   G       PG        GP+  P  PG   AP   GP+      G +      G
Sbjct: 855 APGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIG 914

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P       GP+      G        G 
Sbjct: 915 PVGPAGARGPAGPQGPRGDKGETGEEGD 942

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 82/265 (30%), Positives = 90/265 (33%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
            PG    P   G       PGP+     PGP      PGP  A    GP  A   PG + 
Sbjct: 660 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAG 719

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
               PGPS     PGP       G        GP+  P   GP   P   G   AP   G
Sbjct: 720 RVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADG 779

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
           P+ AP  PGP       G    P   G    P LPGPS  P   GPS A    GP     
Sbjct: 780 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMG 839

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
            PG +  P   G   AP   G       PG        GP+  P  PG   AP   GP+ 
Sbjct: 840 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 899

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
                G +      GP       GP
Sbjct: 900 KSGDRGETGPAGPIGPVGPAGARGP 924

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 76/270 (28%), Positives = 85/270 (31%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P E  + GP       G + AP   G       PG   +   PG    P   G +  P  
Sbjct: 520 PGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGP 579

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G        G   AP   G        GP      PG        GP+      G    
Sbjct: 580 KGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGD 639

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
              PGP       GP  A   PG    P   G       PGP+     PGP      PGP
Sbjct: 640 RGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGP 699

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
             A    GP  A   PG +     PGPS     PGP       G        GP+  P  
Sbjct: 700 KGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGE 759

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP   P   G   AP   GP+ AP  PGP
Sbjct: 760 VGPPGPPGPAGEKGAPGADGPAGAPGTPGP 789

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 82/268 (30%), Positives = 91/268 (33%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           EP   G       PGP+     PGP      PGP  A    GP  A   PG +     PG
Sbjct: 666 EPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPG 725

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           PS     PGP       G        GP+  P   GP   P   G   AP   GP+ AP 
Sbjct: 726 PSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPG 785

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP       G    P   G    P LPGPS  P   GPS A    GP      PG + 
Sbjct: 786 TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 845

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G   AP   G       PG        GP+  P  PG   AP   GP+      G
Sbjct: 846 PPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRG 905

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +      GP       GP+      G 
Sbjct: 906 ETGPAGPIGPVGPAGARGPAGPQGPRGD 933

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 83/265 (31%), Positives = 91/265 (34%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
             GP  A   PG    P   G       PGP+     PGP      PGP  A    GP  
Sbjct: 651 FAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPG 710

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
           A   PG +     PGPS     PGP       G        GP+  P   GP   P   G
Sbjct: 711 ATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAG 770

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
              AP   GP+ AP  PGP       G    P   G    P LPGPS  P   GPS A  
Sbjct: 771 EKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASG 830

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             GP      PG +  P   G   AP   G       PG        GP+  P  PG   
Sbjct: 831 ERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG 890

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
           AP   GP+      G +      GP
Sbjct: 891 APGPVGPAGKSGDRGETGPAGPIGP 915

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 66/268 (24%), Positives = 81/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G       PG       PGP+      G        G + AP  PG   AP L G
Sbjct: 507 APGPSGARGERGFPGERGVEGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQG 566

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G        G +      G      + G +     PGP+ AP   G +    
Sbjct: 567 MPGERGAAGLPGPKGDRGDAGPKGADGAPGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSG 626

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP+ A   PG    P  PGP+     PG    P   G        G +  P   GP+ 
Sbjct: 627 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAG 686

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G   AP   G   +   PG +  P   G    P   G +  P  PGP+      G
Sbjct: 687 PPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKG 746

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P       G       PGP       G 
Sbjct: 747 PRGETGPAGRPGEVGPPGPPGPAGEKGA 774

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 73/268 (27%), Positives = 80/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G       PG   +   PG    P   G +  P   G        G   AP   G
Sbjct: 540 APGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGAPGKDG 599

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   GP      PG        GP+      G       PGP       GP  A  
Sbjct: 600 VRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADG 659

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG    P   G       PGP+     PGP      PGP  A    GP  A   PG + 
Sbjct: 660 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAG 719

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PGPS     PGP       G        GP+  P   GP   P   G   AP   G
Sbjct: 720 RVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADG 779

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P+ AP  PGP       G    P   G 
Sbjct: 780 PAGAPGTPGPQGIAGQRGVVGLPGQRGE 807

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 73/265 (27%), Positives = 81/265 (30%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
             G + AP   G       PG   +   PG    P   G +  P   G        G   
Sbjct: 534 PRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADG 593

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
           AP   G        GP      PG        GP+      G       PGP       G
Sbjct: 594 APGKDGVRGLTGPIGPPGPAGAPGDKGEAGPSGPAGPTGARGAPGDRGEPGPPGPAGFAG 653

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
           P  A   PG    P   G       PGP+     PGP      PGP  A    GP  A  
Sbjct: 654 PPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATG 713

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
            PG +     PGPS     PGP       G        GP+  P   GP   P   G   
Sbjct: 714 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKG 773

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
           AP   GP+ AP  PGP       G 
Sbjct: 774 APGADGPAGAPGTPGPQGIAGQRGV 798

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 75/268 (27%), Positives = 86/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                GP       GP   P   G        G   +    G    P  PGP+ A    G
Sbjct: 165 AAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAG 224

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
              A   PG   A   PG + AP  PG        GPS AP   G S  P  PG      
Sbjct: 225 NPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTG 284

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G      + GP       G   A   PGPS  P  PG    P   G   A  + GP  
Sbjct: 285 AKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKG 344

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G        G       PG +  P   G + +P  PGP      PGP+     PG
Sbjct: 345 PAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGEDGRPG 404

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P+  P   G +     PGP  A   PG 
Sbjct: 405 PAGPPGARGQAGVMGFPGPKGAAGEPGK 432

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 74/268 (27%), Positives = 84/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E   PG        G   A    GP       GP   P   G        G   +    G
Sbjct: 147 ERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQG 206

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P  PGP+ A    G   A   PG   A   PG + AP  PG        GPS AP 
Sbjct: 207 VRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPG 266

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G S  P  PG        G      + GP       G   A   PGPS  P  PG   
Sbjct: 267 PKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERG 326

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G   A  + GP       G        G       PG +  P   G + +P  PG
Sbjct: 327 GPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPG 386

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P      PGP+     PGP+  P   G 
Sbjct: 387 PDGKTGPPGPAGEDGRPGPAGPPGARGQ 414

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 66/270 (24%), Positives = 75/270 (27%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  G   AP   G    P   G +  P   G   A   PG + A    GP      
Sbjct: 625 SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 684

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            GP       G        G +  P   G   A    GP       GP   P   G   +
Sbjct: 685 AGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGS 744

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               G +     PG    P  PGP+     PG       PG      + G      LPG 
Sbjct: 745 KGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQ 804

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                 PG       PG        G    P   GP      PG S     PG   +P  
Sbjct: 805 RGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGR 864

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G   A    G +     PG   AP  PGP
Sbjct: 865 DGSPGAKGDRGETGPAGPPGAPGAPGAPGP 894

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 78/270 (28%), Positives = 86/270 (31%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                 PGP      PGP  A    GP  A   PG +     PGPS     PGP      
Sbjct: 682 AGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGK 741

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G        GP+  P   GP   P   G   AP   GP+ AP  PGP       G    
Sbjct: 742 EGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGL 801

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P   G    P LPGPS  P   GPS A    GP      PG +  P   G   AP   G 
Sbjct: 802 PGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGS 861

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                 PG        GP+  P  PG   AP   GP+      G +      GP      
Sbjct: 862 PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGA 921

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP+      G        G        G 
Sbjct: 922 RGPAGPQGPRGDKGETGEEGDRGIKGHRGF 951

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 73/270 (27%), Positives = 83/270 (30%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P +    G       PG        G   A    GP       GP   P   G       
Sbjct: 136 PGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGP 195

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G   +    G    P  PGP+ A    G   A   PG   A   PG + AP  PG    
Sbjct: 196 EGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 255

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               GPS AP   G S  P  PG        G      + GP       G   A   PGP
Sbjct: 256 SGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGP 315

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           S  P  PG    P   G   A  + GP       G        G       PG +  P  
Sbjct: 316 SGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGA 375

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G + +P  PGP      PGP+     PGP
Sbjct: 376 KGLTGSPGSPGPDGKTGPPGPAGEDGRPGP 405

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 64/267 (23%), Positives = 75/267 (28%)

Query: 27   PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
            P   G   +    G +     PG    P  PGP+     PG       PG      + G 
Sbjct: 736  PGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQ 795

Query: 87   SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
                 LPG       PG       PG        G    P   GP      PG S     
Sbjct: 796  RGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGA 855

Query: 147  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
            PG   +P   G   A    G +     PG   AP  PGP       G        GP   
Sbjct: 856  PGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGP 915

Query: 207  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
                G        GP       G      + G      L GP   P  PG        GP
Sbjct: 916  VGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGP 975

Query: 267  SSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +     PG + +P   G +  P   GP
Sbjct: 976  AGPRGPPGSAGSPGKDGLNGLPGPIGP 1002

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 62/270 (22%), Positives = 70/270 (25%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P      G        G +  P   G   A    GP       GP   P   G   +   
Sbjct: 688 PGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGP 747

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G +     PG    P  PGP+     PG       PG      + G      LPG    
Sbjct: 748 RGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE 807

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
              PG       PG        G    P   GP      PG S     PG   +P   G 
Sbjct: 808 RGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGS 867

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
             A    G +     PG   AP  PGP       G        GP       G       
Sbjct: 868 PGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGP 927

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP       G      + G      L GP
Sbjct: 928 QGPRGDKGETGEEGDRGIKGHRGFSGLQGP 957

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 64/271 (23%), Positives = 73/271 (26%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P      GP       GP   P   G   +    G +     PG    P  PGP+     
Sbjct: 715 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGA 774

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PG       PG      + G      LPG       PG       PG        G    
Sbjct: 775 PGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP 834

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P   GP      PG S     PG   +P   G   A    G +     PG   AP  PGP
Sbjct: 835 PGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGP 894

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                  G        GP       G        GP       G      + G      L
Sbjct: 895 VGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGL 954

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
            GP   P  PG        GP+     PG +
Sbjct: 955 QGPPGPPGSPGEQGPSGASGPAGPRGPPGSA 985

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 79/265 (29%), Positives = 88/265 (33%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
            PG +     PGPS     PGP       G        GP+  P   GP   P   G   
Sbjct: 714 FPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKG 773

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
           AP   GP+ AP  PGP       G    P   G    P LPGPS  P   GPS A    G
Sbjct: 774 APGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERG 833

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
           P      PG +  P   G   AP   G       PG        GP+  P  PG   AP 
Sbjct: 834 PPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG 893

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             GP+      G +      GP       GP+      G        G        G S 
Sbjct: 894 PVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSG 953

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
               PGP  +P   GPS A    GP
Sbjct: 954 LQGPPGPPGSPGEQGPSGASGPAGP 978

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 63/264 (23%), Positives = 70/264 (26%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G   A    GP       GP   P   G   +    G +     PG    P  PGP+  
Sbjct: 712 TGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGE 771

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PG       PG      + G      LPG       PG       PG        G 
Sbjct: 772 KGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGE 831

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
              P   GP      PG S     PG   +P   G   A    G +     PG   AP  
Sbjct: 832 RGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGA 891

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PGP       G        GP       G        GP       G      + G    
Sbjct: 892 PGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGF 951

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
             L GP   P  PG        GP
Sbjct: 952 SGLQGPPGPPGSPGEQGPSGASGP 975

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 63/264 (23%), Positives = 71/264 (26%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G +  P   G   A    GP       GP   P   G   +    G +     PG    
Sbjct: 703 RGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGP 762

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P  PGP+     PG       PG      + G      LPG       PG       PG 
Sbjct: 763 PGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGK 822

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G    P   GP      PG S     PG   +P   G   A    G +     
Sbjct: 823 QGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGP 882

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PG   AP  PGP       G        GP       G        GP       G    
Sbjct: 883 PGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGD 942

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
             + G      L GP   P  PG 
Sbjct: 943 RGIKGHRGFSGLQGPPGPPGSPGE 966

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 77/264 (29%), Positives = 85/264 (32%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
           PGP       G        GP+  P   GP   P   G   AP   GP+ AP  PGP   
Sbjct: 733 PGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGI 792

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
               G    P   G    P LPGPS  P   GPS A    GP      PG +  P   G 
Sbjct: 793 AGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGR 852

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
             AP   G       PG        GP+  P  PG   AP   GP+      G +     
Sbjct: 853 EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGP 912

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            GP       GP+      G        G        G S     PGP  +P   GPS A
Sbjct: 913 IGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGA 972

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               GP   P   G      L G 
Sbjct: 973 SGPAGPRGPPGSAGSPGKDGLNGL 996

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 79/268 (29%), Positives = 87/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PGP  A    GP  A   PG +     PGPS     PGP       G        G
Sbjct: 693 NVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETG 752

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+  P   GP   P   G   AP   GP+ AP  PGP       G    P   G    P 
Sbjct: 753 PAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPG 812

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
           LPGPS  P   GPS A    GP      PG +  P   G   AP   G       PG   
Sbjct: 813 LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKG 872

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                GP+  P  PG   AP   GP+      G +      GP       GP+      G
Sbjct: 873 DRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRG 932

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   G        G S     PGP
Sbjct: 933 DKGETGEEGDRGIKGHRGFSGLQGPPGP 960

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 64/271 (23%), Positives = 75/271 (27%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P      GP   P   G   +    G +     PG    P  PGP+     PG       
Sbjct: 724 PGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGA 783

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PG      + G      LPG       PG       PG        G    P   GP   
Sbjct: 784 PGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGL 843

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
              PG S     PG   +P   G   A    G +     PG   AP  PGP       G 
Sbjct: 844 AGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGD 903

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                  GP       G        GP       G      + G      L GP   P  
Sbjct: 904 RGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGS 963

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
           PG        GP+     PG + +P   G +
Sbjct: 964 PGEQGPSGASGPAGPRGPPGSAGSPGKDGLN 994

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 78/264 (29%), Positives = 87/264 (32%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GP  A   PG +     PGPS     PGP       G        GP+  P   GP   
Sbjct: 706 AGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGP 765

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   G   AP   GP+ AP  PGP       G    P   G    P LPGPS  P   GP
Sbjct: 766 PGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGP 825

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           S A    GP      PG +  P   G   AP   G       PG        GP+  P  
Sbjct: 826 SGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGA 885

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PG   AP   GP+      G +      GP       GP+      G        G    
Sbjct: 886 PGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGI 945

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G S     PGP  +P   GP
Sbjct: 946 KGHRGFSGLQGPPGPPGSPGEQGP 969

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 72/270 (26%), Positives = 80/270 (29%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P  P   G        G       PG        G   A    GP       GP   P  
Sbjct: 127 PGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGA 186

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G        G   +    G    P  PGP+ A    G   A   PG   A   PG + A
Sbjct: 187 VGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGA 246

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P  PG        GPS AP   G S  P  PG        G      + GP       G 
Sbjct: 247 PGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGK 306

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
             A   PGPS  P  PG    P   G   A  + GP       G        G       
Sbjct: 307 RGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGR 366

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           PG +  P   G + +P  PGP      PGP
Sbjct: 367 PGEAGLPGAKGLTGSPGSPGPDGKTGPPGP 396

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 79/269 (29%), Positives = 87/269 (32%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
             P   G   AP   GP+ AP  PGP       G    P   G    P LPGPS  P   G
Sbjct: 765  PPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQG 824

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            PS A    GP      PG +  P   G   AP   G       PG        GP+  P 
Sbjct: 825  PSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPG 884

Query: 146  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             PG   AP   GP+      G +      GP       GP+      G        G   
Sbjct: 885  APGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRG 944

Query: 206  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                 G S     PGP  +P   GPS A    GP   P   G      L G       PG
Sbjct: 945  IKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPG 1004

Query: 266  PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
            P       GP+  P  PGP   P  P   
Sbjct: 1005 PRGRTGDAGPAGPPGPPGPPGPPGPPSGG 1033

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 69/270 (25%), Positives = 78/270 (28%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  G   +P   G        G       PG        G   A    GP      
Sbjct: 118 AGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGP 177

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            GP   P   G        G   +    G    P  PGP+ A    G   A   PG   A
Sbjct: 178 TGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGA 237

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
              PG + AP  PG        GPS AP   G S  P  PG        G      + GP
Sbjct: 238 NGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGP 297

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                  G   A   PGPS  P  PG    P   G   A  + GP       G       
Sbjct: 298 PGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGP 357

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G       PG +  P   G + +P  PGP
Sbjct: 358 KGSPGEAGRPGEAGLPGAKGLTGSPGSPGP 387

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 78/268 (29%), Positives = 86/268 (32%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                 GP+  P   GP   P   G   AP   GP+ AP  PGP       G    P   G
Sbjct: 747  PRGETGPAGRPGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRG 806

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                P LPGPS  P   GPS A    GP      PG +  P   G   AP   G      
Sbjct: 807  ERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDG 866

Query: 146  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             PG        GP+  P  PG   AP   GP+      G +      GP       GP+ 
Sbjct: 867  SPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAG 926

Query: 206  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                 G        G        G S     PGP  +P   GPS A    GP   P   G
Sbjct: 927  PQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAG 986

Query: 266  PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  L G       PGP       GP
Sbjct: 987  SPGKDGLNGLPGPIGPPGPRGRTGDAGP 1014

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 79/264 (29%), Positives = 87/264 (32%)

Query: 30   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
             GP   P   G   AP   GP+ AP  PGP       G    P   G    P LPGPS  
Sbjct: 760  VGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGE 819

Query: 90   PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
            P   GPS A    GP      PG +  P   G   AP   G       PG        GP
Sbjct: 820  PGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGP 879

Query: 150  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
            +  P  PG   AP   GP+      G +      GP       GP+      G       
Sbjct: 880  AGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGE 939

Query: 210  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
             G        G S     PGP  +P   GPS A    GP   P   G      L G    
Sbjct: 940  EGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGP 999

Query: 270  PDLPGPSSAPDLPGPSSAPDLPGP 293
               PGP       GP+  P  PGP
Sbjct: 1000 IGPPGPRGRTGDAGPAGPPGPPGP 1023

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 78/271 (28%), Positives = 88/271 (32%), Gaps = 3/271 (1%)

Query: 23  RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
           +P  P   GP       G      LPG        G   A    GP+     PG      
Sbjct: 75  KPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENG 134

Query: 83  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
            PG      LPG    P  PGP+ A    G + A   PGP+     PG    P   G   
Sbjct: 135 APGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGF---PGAVGAKG 191

Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
                G   +    G    P  PGP+ A    G   A   PG   A   PG + AP  PG
Sbjct: 192 EAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPG 251

Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
                   GPS AP   G S  P  PG        G      + GP       G   A  
Sbjct: 252 ARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARG 311

Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            PGPS  P  PG    P   G   A  + GP
Sbjct: 312 EPGPSGLPGPPGERGGPGSRGFPGADGVAGP 342

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 66/268 (24%), Positives = 73/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                G S      G +      G   +P   G        G       PG        G
Sbjct: 102 MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARG 161

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
              A    GP       GP   P   G        G   +    G    P  PGP+ A  
Sbjct: 162 NDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAG 221

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G   A   PG   A   PG + AP  PG        GPS AP   G S  P  PG   
Sbjct: 222 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKG 281

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G      + GP       G   A   PGPS  P  PG    P   G   A  + G
Sbjct: 282 DTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPGERGGPGSRGFPGADGVAG 341

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P       G        G       PG 
Sbjct: 342 PKGPAGERGSPGPAGPKGSPGEAGRPGE 369

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 67/268 (25%), Positives = 74/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G    P   G        G S      G +      G   +P   G        G
Sbjct: 84  PPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRG 143

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                  PG        G   A    GP       GP   P   G        G   +  
Sbjct: 144 LPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEG 203

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G    P  PGP+ A    G   A   PG   A   PG + AP  PG        GPS 
Sbjct: 204 PQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSG 263

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           AP   G S  P  PG        G      + GP       G   A   PGPS  P  PG
Sbjct: 264 APGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPSGLPGPPG 323

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P   G   A  + GP       G 
Sbjct: 324 ERGGPGSRGFPGADGVAGPKGPAGERGS 351

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 78/268 (29%), Positives = 87/268 (32%), Gaps = 3/268 (1%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G +  P  PGP+      GP       G       PGP   P   G   AP   G
Sbjct: 723 PPGPSGNAGPPGPPGPAGKEGSKGPRGETGPAGRPGEVGPPGP---PGPAGEKGAPGADG 779

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+ AP  PGP       G    P   G    P LPGPS  P   GPS A    GP     
Sbjct: 780 PAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMG 839

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG +  P   G   AP   G       PG        GP+  P  PG   AP   GP+ 
Sbjct: 840 PPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 899

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G +      GP       GP+      G        G        G S     PG
Sbjct: 900 KSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPG 959

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P  +P   GPS A    GP   P   G 
Sbjct: 960 PPGSPGEQGPSGASGPAGPRGPPGSAGS 987

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 72/268 (26%), Positives = 79/268 (29%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
             P  PGP       G    P   G    P LPGPS  P   GPS A    GP      PG
Sbjct: 783  APGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPG 842

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
             +  P   G   AP   G       PG        GP+  P  PG   AP   GP+    
Sbjct: 843  LAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSG 902

Query: 146  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
              G +      GP       GP+      G        G        G S     PGP  
Sbjct: 903  DRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPG 962

Query: 206  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            +P   GPS A    GP   P   G      L G       PGP       GP+  P  PG
Sbjct: 963  SPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPG 1022

Query: 266  PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            P   P  P                    
Sbjct: 1023 PPGPPGPPSGGYDLSFLPQPPQQKAHDK 1050

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 65/264 (24%), Positives = 75/264 (28%)

Query: 30   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            PG    P  PGP+     PG       PG      + G      LPG       PG    
Sbjct: 757  PGEVGPPGPPGPAGEKGAPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGP 816

Query: 90   PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
               PG        G    P   GP      PG S     PG   +P   G   A    G 
Sbjct: 817  SGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGE 876

Query: 150  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
            +     PG   AP  PGP       G        GP       G        GP      
Sbjct: 877  TGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGE 936

Query: 210  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
             G      + G      L GP   P  PG        GP+     PG + +P   G +  
Sbjct: 937  TGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGL 996

Query: 270  PDLPGPSSAPDLPGPSSAPDLPGP 293
            P   GP       G +     PGP
Sbjct: 997  PGPIGPPGPRGRTGDAGPAGPPGP 1020

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 68/265 (25%), Positives = 75/265 (28%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
            PGP       G +  P  PG    P   G    P   G        G S      G + 
Sbjct: 60  PPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAG 119

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                G   +P   G        G       PG        G   A    GP       G
Sbjct: 120 PAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTG 179

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
           P   P   G        G   +    G    P  PGP+ A    G   A   PG   A  
Sbjct: 180 PPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANG 239

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
            PG + AP  PG        GPS AP   G S  P  PG        G      + GP  
Sbjct: 240 APGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPG 299

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
                G   A   PGPS  P  PG 
Sbjct: 300 PAGEEGKRGARGEPGPSGLPGPPGE 324

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 78/268 (29%), Positives = 87/268 (32%), Gaps = 3/268 (1%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
             +     S P   GPS    LPGP  AP   G    P  PG   A    GP   P  PG
Sbjct: 6   YDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPG 65

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            +      G    P   GP       G      LPG        G   A    GP+    
Sbjct: 66  KNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKG 125

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG       PG      LPG    P  PGP+ A    G + A   PGP+     PG   
Sbjct: 126 EPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGF-- 183

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G        G   +    G    P  PGP+ A    G   A   PG   A   PG
Sbjct: 184 -PGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPG 242

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            + AP  PG        GPS AP   G 
Sbjct: 243 IAGAPGFPGARGPSGPEGPSGAPGPKGN 270

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 68/268 (25%), Positives = 75/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           EP   GP      PGP       G +  P  PG    P   G    P   G        G
Sbjct: 48  EPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRG 107

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            S      G +      G   +P   G        G       PG        G   A  
Sbjct: 108 FSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAG 167

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP       GP   P   G        G   +    G    P  PGP+ A    G   
Sbjct: 168 AAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPG 227

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           A   PG   A   PG + AP  PG        GPS AP   G S  P  PG        G
Sbjct: 228 ADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKG 287

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                 + GP       G   A   PGP
Sbjct: 288 EPGPAGVQGPPGPAGEEGKRGARGEPGP 315

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 80/264 (30%), Positives = 88/264 (33%), Gaps = 3/264 (1%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GPS    LPGP  AP   G    P  PG   A    GP   P  PG +      G    
Sbjct: 19  MGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGR 78

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   GP       G      LPG        G   A    GP+     PG       PG 
Sbjct: 79  PGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQ 138

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                LPG    P  PGP+ A    G + A   PGP+     PG    P   G       
Sbjct: 139 MGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGF---PGAVGAKGEAGP 195

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G   +    G    P  PGP+ A    G   A   PG   A   PG + AP  PG    
Sbjct: 196 EGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 255

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               GPS AP   G S  P  PG 
Sbjct: 256 SGPEGPSGAPGPKGNSGEPGAPGN 279

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 78/265 (29%), Positives = 86/265 (32%), Gaps = 3/265 (1%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
           LPGP  AP   G    P  PG   A    GP   P  PG +      G    P   GP  
Sbjct: 27  LPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPG 86

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                G      LPG        G   A    GP+     PG       PG      LPG
Sbjct: 87  PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPG 146

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
               P  PGP+ A    G + A   PGP+     PG    P   G        G   +  
Sbjct: 147 ERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGF---PGAVGAKGEAGPEGARGSEG 203

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             G    P  PGP+ A    G   A   PG   A   PG + AP  PG        GPS 
Sbjct: 204 PQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSG 263

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
           AP   G S  P  PG        G 
Sbjct: 264 APGPKGNSGEPGAPGNKGDTGAKGE 288

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 67/264 (25%), Positives = 74/264 (28%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G +  P  PG    P   G    P   G        G S      G +      G   +
Sbjct: 70  DGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS 129

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   G        G       PG        G   A    GP       GP   P   G 
Sbjct: 130 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGA 189

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G   +    G    P  PGP+ A    G   A   PG   A   PG + AP  
Sbjct: 190 KGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGF 249

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PG        GPS AP   G S  P  PG        G      + GP       G   A
Sbjct: 250 PGARGPSGPEGPSGAPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGA 309

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
              PGPS  P  PG    P   G 
Sbjct: 310 RGEPGPSGLPGPPGERGGPGSRGF 333

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 67/265 (25%), Positives = 74/265 (27%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
            PGP      PG    P   GP      PGP       G +  P  PG    P   G   
Sbjct: 33  APGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARG 92

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
            P   G        G S      G +      G   +P   G        G       PG
Sbjct: 93  LPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPG 152

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
                   G   A    GP       GP   P   G        G   +    G    P 
Sbjct: 153 APGPAGARGNDGAAGAAGPPGPTGPTGPPGFPGAVGAKGEAGPEGARGSEGPQGVRGEPG 212

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
            PGP+ A    G   A   PG   A   PG + AP  PG        GPS AP   G S 
Sbjct: 213 PPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSG 272

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
            P  PG        G      + GP
Sbjct: 273 EPGAPGNKGDTGAKGEPGPAGVQGP 297

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 74/268 (27%), Positives = 83/268 (30%), Gaps = 3/268 (1%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P  PG   A    GP   P  PG +      G    P   GP       G      LPG
Sbjct: 42  PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPG 101

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G   A    GP+     PG       PG      LPG    P  PGP+ A  
Sbjct: 102 MKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARG 161

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G + A   PGP+     PG    P   G        G   +    G    P  PGP+ 
Sbjct: 162 NDGAAGAAGPPGPTGPTGPPGF---PGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAG 218

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           A    G   A   PG   A   PG + AP  PG        GPS AP   G S  P  PG
Sbjct: 219 AAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPEGPSGAPGPKGNSGEPGAPG 278

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   G      + GP       G 
Sbjct: 279 NKGDTGAKGEPGPAGVQGPPGPAGEEGK 306

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 74/263 (28%), Positives = 83/263 (31%), Gaps = 3/263 (1%)

Query: 31  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 90
                 +     S P   GPS    LPGP  AP   G    P  PG   A    GP   P
Sbjct: 2   MSYGYDEKSTGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPP 61

Query: 91  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
             PG +      G    P   GP       G      LPG        G   A    GP+
Sbjct: 62  GPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPA 121

Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
                PG       PG      LPG    P  PGP+ A    G + A   PGP+     P
Sbjct: 122 GPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAAGAAGPPGPTGPTGPP 181

Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
           G    P   G        G   +    G    P  PGP+ A    G   A   PG   A 
Sbjct: 182 GF---PGAVGAKGEAGPEGARGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGAN 238

Query: 271 DLPGPSSAPDLPGPSSAPDLPGP 293
             PG + AP  PG        GP
Sbjct: 239 GAPGIAGAPGFPGARGPSGPEGP 261

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 78/271 (28%), Positives = 86/271 (31%), Gaps = 3/271 (1%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
             P   GP+ AP  PGP       G    P   G    P LPGPS  P   GPS A    G
Sbjct: 774  APGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERG 833

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            P      PG +  P   G   AP   G       PG        GP+  P  PG   AP 
Sbjct: 834  PPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPG 893

Query: 146  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
              GP+      G +      GP       GP+      G        G        G S 
Sbjct: 894  PVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSG 953

Query: 206  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPGPSSAPDLPGPSSAPD 262
                PGP  +P   GPS A    GP   P   G         LPGP   P   G +    
Sbjct: 954  LQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAG 1013

Query: 263  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
              GP   P  PGP   P      S    P  
Sbjct: 1014 PAGPPGPPGPPGPPGPPSGGYDLSFLPQPPQ 1044

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 54.3 bits (131), Expect = 5e-08
 Identities = 62/239 (25%), Positives = 68/239 (28%)

Query: 24   PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
            P  P   G        G S     PGP   P L GP       G   A   PG   +P  
Sbjct: 811  PGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGA 870

Query: 84   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
             G        GP  AP  PG        G S      GP+      GP+ A    GP   
Sbjct: 871  KGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGP 930

Query: 144  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
                G +      G        G    P  PG        G S      GP  +   PG 
Sbjct: 931  RGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGK 990

Query: 204  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
                 LPGP   P   G +      GP   P  PGP   P      S    P    A D
Sbjct: 991  DGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFLPQPPQQKAHD 1049

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 53/216 (24%), Positives = 60/216 (27%)

Query: 24   PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
            P     PG +  P   G   AP   G       PG        GP+  P  PG   AP  
Sbjct: 835  PGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGP 894

Query: 84   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
             GP+      G +      GP       GP+      G        G        G S  
Sbjct: 895  VGPAGKSGDRGETGPAGPIGPVGPAGARGPAGPQGPRGDKGETGEEGDRGIKGHRGFSGL 954

Query: 144  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               PGP  +P   GPS A    GP   P   G      L G       PGP       GP
Sbjct: 955  QGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGP 1014

Query: 204  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
            +  P  PGP   P  P                    
Sbjct: 1015 AGPPGPPGPPGPPGPPSGGYDLSFLPQPPQQKAHDK 1050

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 47/186 (25%), Positives = 52/186 (27%)

Query: 23   RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
            R   P   G        GP  AP  PG        G S      GP+      GP+ A  
Sbjct: 864  RDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPIGPVGPAGARG 923

Query: 83   LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
              GP       G +      G        G    P  PG        G S      GP  
Sbjct: 924  PAGPQGPRGDKGETGEEGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPG 983

Query: 143  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
            +   PG      LPGP   P   G +      GP   P  PGP   P      S    P 
Sbjct: 984  SAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPAGPPGPPGPPGPPGPPSGGYDLSFLPQPP 1043

Query: 203  PSSAPD 208
               A D
Sbjct: 1044 QQKAHD 1049

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 72.8 bits (179), Expect = 7e-14
 Identities = 71/268 (26%), Positives = 81/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E   PGP       GP+ A   PG        GP       GP       GP       G
Sbjct: 632 ERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAG 691

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+      GP+     PG +     PGPS     PGP  A    G        GP     
Sbjct: 692 PAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSG 751

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G +      G       PG +  P  PGP      PG    P   G    P + G   
Sbjct: 752 ETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVG 811

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G +  P   GP      PG + AP   G    P   GP      PG       PG
Sbjct: 812 EPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPG 871

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +  P   GP      PG       PGP
Sbjct: 872 NAGPPGAVGPVGPVGEPGKLGNRGEPGP 899

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 69/270 (25%), Positives = 80/270 (29%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  GP+ A   PG        GP       GP       GP       GP+     
Sbjct: 639 VGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGD 698

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            GP+     PG +     PGPS     PGP  A    G        GP       G +  
Sbjct: 699 AGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGP 758

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               G       PG +  P  PGP      PG    P   G    P + G    P   G 
Sbjct: 759 TGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGI 818

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           +  P   GP      PG + AP   G    P   GP      PG       PG +  P  
Sbjct: 819 AGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGA 878

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP      PG       PGP+ A    G 
Sbjct: 879 VGPVGPVGEPGKLGNRGEPGPAGAVGPAGA 908

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 68/264 (25%), Positives = 78/264 (29%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G       PGP       GP+ A   PG        GP       GP       GP   
Sbjct: 627 RGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGP 686

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
               GP+      GP+     PG +     PGPS     PGP  A    G        GP
Sbjct: 687 VGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGP 746

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G +      G       PG +  P  PGP      PG    P   G    P +
Sbjct: 747 VGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGV 806

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G    P   G +  P   GP      PG + AP   G    P   GP      PG    
Sbjct: 807 AGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGE 866

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
              PG +  P   GP      PG 
Sbjct: 867 RGTPGNAGPPGAVGPVGPVGEPGK 890

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 68/268 (25%), Positives = 78/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PG        GP       GP       GP       GP+      GP+     PG
Sbjct: 650 AAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPG 709

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            +     PGPS     PGP  A    G        GP       G +      G      
Sbjct: 710 AAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTG 769

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG +  P  PGP      PG    P   G    P + G    P   G +  P   GP  
Sbjct: 770 EPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPG 829

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PG + AP   G    P   GP      PG       PG +  P   GP      PG
Sbjct: 830 NVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPG 889

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PGP+ A    G        GP
Sbjct: 890 KLGNRGEPGPAGAVGPAGAVGPRGPSGP 917

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 68/268 (25%), Positives = 78/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E    GP       GP       GP       GP+      GP+     PG +     PG
Sbjct: 659 ERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPG 718

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           PS     PGP  A    G        GP       G +      G       PG +  P 
Sbjct: 719 PSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPG 778

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP      PG    P   G    P + G    P   G +  P   GP      PG + 
Sbjct: 779 PPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNG 838

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           AP   G    P   GP      PG       PG +  P   GP      PG       PG
Sbjct: 839 APGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPG 898

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P+ A    G        GP       G 
Sbjct: 899 PAGAVGPAGAVGPRGPSGPQGIRGDDGE 926

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 69/268 (25%), Positives = 80/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E    GP+      G       PGP       GP+ A   PG        GP       G
Sbjct: 614 EGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVG 673

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P       GP       GP+      GP+     PG +     PGPS     PGP  A  
Sbjct: 674 PQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAG 733

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G        GP       G +      G       PG +  P  PGP      PG   
Sbjct: 734 KEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLG 793

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G    P + G    P   G +  P   GP      PG + AP   G    P   G
Sbjct: 794 LPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDG 853

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P      PG       PG +  P   GP
Sbjct: 854 PPGRDGQPGHKGERGTPGNAGPPGAVGP 881

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 67/268 (25%), Positives = 77/268 (28%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E    GP       GP       GP+      GP+     PG +     PGPS     PG
Sbjct: 668 EQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPG 727

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P  A    G        GP       G +      G       PG +  P  PGP     
Sbjct: 728 PPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLG 787

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG    P   G    P + G    P   G +  P   GP      PG + AP   G   
Sbjct: 788 APGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDG 847

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   GP      PG       PG +  P   GP      PG       PGP+ A    G
Sbjct: 848 NPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAG 907

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   GP       G        G 
Sbjct: 908 AVGPRGPSGPQGIRGDDGEPGDKGDKGI 935

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 68/270 (25%), Positives = 78/270 (28%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  GPS  P   G        GP+ AP   GP   P   G +  P   G   AP L
Sbjct: 522 TGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGL 581

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G + A    G    P   G        G        GP+      G       PGP   
Sbjct: 582 RGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGP 641

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               GP+ A   PG        GP       GP       GP       GP+      GP
Sbjct: 642 SGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGP 701

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           +     PG +     PGPS     PGP  A    G        GP       G +     
Sbjct: 702 TGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGF 761

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G       PG +  P  PGP      PG 
Sbjct: 762 VGEKGPTGEPGSAGPPGPPGPQGLLGAPGF 791

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 66/264 (25%), Positives = 75/264 (28%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GP+      G S  P  PG       PG        G      LPG    P   GP+  
Sbjct: 345 SGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGP 404

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
               G    P   GP+  P  PG      L G   AP   G + A   PG        G 
Sbjct: 405 RGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGE 464

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                 PG    P   GP+     PG        G        G    P   G +     
Sbjct: 465 QGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGP 524

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G       PGP       G       PGP+  P +PG      +PG       PG    
Sbjct: 525 IGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGD 584

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G   A  LPG   AP   G 
Sbjct: 585 TGATGRDGARGLPGAIGAPGPAGG 608

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.9 bits (174), Expect = 4e-13
 Identities = 65/270 (24%), Positives = 75/270 (27%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  GP       GP+      GP+     PG +     PGPS     PGP  A   
Sbjct: 675 QGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGK 734

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G        GP       G +      G       PG +  P  PGP      PG    
Sbjct: 735 EGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGL 794

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P   G    P + G    P   G +  P   GP      PG + AP   G    P   GP
Sbjct: 795 PGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGP 854

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                 PG       PG +  P   GP      PG       PGP+ A    G       
Sbjct: 855 PGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGP 914

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP       G        G        G 
Sbjct: 915 SGPQGIRGDDGEPGDKGDKGIKGDRGHNGL 944

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 66/268 (24%), Positives = 77/268 (28%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P L G + A    G    P   G        G        GP+      G       PG
Sbjct: 578 APGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPG 637

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P       GP+ A   PG        GP       GP       GP       GP+    
Sbjct: 638 PVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRG 697

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP+     PG +     PGPS     PGP  A    G        GP       G + 
Sbjct: 698 DAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATG 757

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G       PG +  P  PGP      PG    P   G    P + G    P   G
Sbjct: 758 PTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLG 817

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +  P   GP      PG + AP   G 
Sbjct: 818 IAGPPGARGPPGNVGNPGVNGAPGEAGR 845

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.5 bits (173), Expect = 4e-13
 Identities = 68/269 (25%), Positives = 79/269 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E    GP+ AP   GP   P   G +  P   G   AP L G + A    G    P   G
Sbjct: 542 EAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIG 601

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G        GP+      G       PGP       GP+ A   PG      
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERG 661

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP       GP       GP       GP+      GP+     PG +     PGPS 
Sbjct: 662 TKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSG 721

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PGP  A    G        GP       G +      G       PG +  P  PG
Sbjct: 722 LTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPG 781

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
           P      PG    P   G    P + G  
Sbjct: 782 PQGLLGAPGFLGLPGSRGERGLPGVAGSV 810

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 65/264 (24%), Positives = 75/264 (28%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G   AP L G + A    G    P   G        G        GP+      G    
Sbjct: 573 KGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGE 632

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PGP       GP+ A   PG        GP       GP       GP       GP
Sbjct: 633 RGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGP 692

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           +      GP+     PG +     PGPS     PGP  A    G        GP      
Sbjct: 693 AGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGE 752

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G +      G       PG +  P  PGP      PG    P   G    P + G    
Sbjct: 753 TGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGE 812

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
           P   G +  P   GP      PG 
Sbjct: 813 PGPLGIAGPPGARGPPGNVGNPGV 836

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 66/268 (24%), Positives = 76/268 (28%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G        G        GP+      G       PGP       GP+ A   PG
Sbjct: 596 LPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPG 655

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   GP       GP       GP       GP+      GP+     PG +    
Sbjct: 656 AKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTG 715

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGPS     PGP  A    G        GP       G +      G       PG + 
Sbjct: 716 PPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAG 775

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P  PGP      PG    P   G    P + G    P   G +  P   GP      PG
Sbjct: 776 PPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPG 835

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            + AP   G    P   GP      PG 
Sbjct: 836 VNGAPGEAGRDGNPGNDGPPGRDGQPGH 863

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 66/268 (24%), Positives = 76/268 (28%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   GP   P   G +  P   G   AP L G + A    G    P   G        G
Sbjct: 551 APGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAG 610

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   GP+      G       PGP       GP+ A   PG        GP     
Sbjct: 611 DRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQG 670

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP       GP       GP+      GP+     PG +     PGPS     PGP  
Sbjct: 671 PVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPG 730

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           A    G        GP       G +      G       PG +  P  PGP      PG
Sbjct: 731 AAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPG 790

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P   G    P + G    P   G 
Sbjct: 791 FLGLPGSRGERGLPGVAGSVGEPGPLGI 818

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 66/264 (25%), Positives = 76/264 (28%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G        GP+      G       PGP       GP+ A   PG        GP   
Sbjct: 609 AGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGE 668

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
               GP       GP       GP+      GP+     PG +     PGPS     PGP
Sbjct: 669 QGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGP 728

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
             A    G        GP       G +      G       PG +  P  PGP      
Sbjct: 729 PGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGA 788

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PG    P   G    P + G    P   G +  P   GP      PG + AP   G    
Sbjct: 789 PGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGN 848

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
           P   GP      PG       PG 
Sbjct: 849 PGNDGPPGRDGQPGHKGERGTPGN 872

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 65/265 (24%), Positives = 76/265 (28%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
             G +  P   G   AP L G + A    G    P   G        G        GP+ 
Sbjct: 563 ERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAG 622

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                G       PGP       GP+ A   PG        GP       GP       G
Sbjct: 623 PAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAG 682

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
           P       GP+      GP+     PG +     PGPS     PGP  A    G      
Sbjct: 683 PPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRG 742

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             GP       G +      G       PG +  P  PGP      PG    P   G   
Sbjct: 743 DQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERG 802

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
            P + G    P   G +  P   GP
Sbjct: 803 LPGVAGSVGEPGPLGIAGPPGARGP 827

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 65/264 (24%), Positives = 76/264 (28%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GP+ +    GP+      G S  P  PG       PG        G      LPG    
Sbjct: 336 MGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGR 395

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   GP+      G    P   GP+  P  PG      L G   AP   G + A   PG 
Sbjct: 396 PGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGL 455

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G       PG    P   GP+     PG        G        G    P  
Sbjct: 456 QGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGE 515

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G +      G       PGP       G       PGP+  P +PG      +PG    
Sbjct: 516 RGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGE 575

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
              PG        G   A  LPG 
Sbjct: 576 KGAPGLRGDTGATGRDGARGLPGA 599

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 62/268 (23%), Positives = 73/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
              LPG    P   GP+      G    P   GP+  P  PG      L G   AP   G
Sbjct: 386 PVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDG 445

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            + A   PG        G       PG    P   GP+     PG        G      
Sbjct: 446 NNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAG 505

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G    P   G +      G       PGP       G       PGP+  P +PG   
Sbjct: 506 ARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERG 565

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
              +PG       PG        G   A  LPG   AP   G +      GP+      G
Sbjct: 566 VAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAG 625

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   G        G +      G 
Sbjct: 626 ARGIRGERGEPGPVGPSGFAGPAGAAGQ 653

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 70.1 bits (172), Expect = 6e-13
 Identities = 66/268 (24%), Positives = 75/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                GP+     PG +     PGPS     PGP  A    G        GP       G
Sbjct: 695 PRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETG 754

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            +      G       PG +  P  PGP      PG    P   G    P + G    P 
Sbjct: 755 ATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPG 814

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G +  P   GP      PG + AP   G    P   GP      PG       PG + 
Sbjct: 815 PLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAG 874

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   GP      PG       PGP+ A    G        GP       G        G
Sbjct: 875 PPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKG 934

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   G    P L G       PG 
Sbjct: 935 IKGDRGHNGLQGLPGLAGHHGDQGAPGA 962

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 66/268 (24%), Positives = 75/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                G S  P  PG       PG        G      LPG    P   GP+      G
Sbjct: 350 VRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAG 409

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   GP+  P  PG      L G   AP   G + A   PG        G      
Sbjct: 410 AIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAG 469

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG    P   GP+     PG        G        G    P   G +      G   
Sbjct: 470 PPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRG 529

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PGP       G       PGP+  P +PG      +PG       PG        G
Sbjct: 530 PSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATG 589

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
              A  LPG   AP   G +      GP
Sbjct: 590 RDGARGLPGAIGAPGPAGGAGDRGEGGP 617

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 70/268 (26%), Positives = 81/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E  LPGP+ A    GP       GP+      GPS  P   G        GP+ AP   G
Sbjct: 497 EFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAG 556

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P   P   G +  P   G   AP L G + A    G    P   G        G      
Sbjct: 557 PPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGG 616

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP+      G       PGP       GP+ A   PG        GP       GP  
Sbjct: 617 PAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQG 676

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                GP       GP+      GP+     PG +     PGPS     PGP  A    G
Sbjct: 677 PVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEG 736

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   GP       G +      G 
Sbjct: 737 IRGPRGDQGPVGRSGETGATGPTGFVGE 764

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 67/268 (25%), Positives = 77/268 (28%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G        GP+ AP   GP   P   G +  P   G   AP L G + A    G
Sbjct: 533 PPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDG 592

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   G        G        GP+      G       PGP       GP+ A  
Sbjct: 593 ARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAG 652

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG        GP       GP       GP       GP+      GP+     PG + 
Sbjct: 653 QPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAG 712

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PGPS     PGP  A    G        GP       G +      G       PG
Sbjct: 713 RTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPG 772

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +  P  PGP      PG    P   G 
Sbjct: 773 SAGPPGPPGPQGLLGAPGFLGLPGSRGE 800

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.8 bits (171), Expect = 7e-13
 Identities = 66/265 (24%), Positives = 76/265 (28%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
             GP+      GP+     PG +     PGPS     PGP  A    G        GP  
Sbjct: 689 AAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVG 748

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                G +      G       PG +  P  PGP      PG    P   G    P + G
Sbjct: 749 RSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAG 808

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
               P   G +  P   GP      PG + AP   G    P   GP      PG      
Sbjct: 809 SVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERG 868

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
            PG +  P   GP      PG       PGP+ A    G        GP       G   
Sbjct: 869 TPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPG 928

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
                G        G    P L G 
Sbjct: 929 DKGDKGIKGDRGHNGLQGLPGLAGH 953

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.8 bits (171), Expect = 9e-13
 Identities = 64/268 (23%), Positives = 76/268 (28%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
              LPG      + GP+ +    GP+      G S  P  PG       PG        G
Sbjct: 323 SRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAG 382

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                 LPG    P   GP+      G    P   GP+  P  PG      L G   AP 
Sbjct: 383 KEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPG 442

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G + A   PG        G       PG    P   GP+     PG        G   
Sbjct: 443 PDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPG 502

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G    P   G +      G       PGP       G       PGP+  P +PG
Sbjct: 503 PAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPG 562

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                 +PG       PG        G 
Sbjct: 563 ERGVAGVPGGKGEKGAPGLRGDTGATGR 590

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 67/268 (25%), Positives = 80/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E    GP   P L G   +  LPG      + GP+ +    GP+      G S  P  PG
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPG 364

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                  PG        G      LPG    P   GP+      G    P   GP+  P 
Sbjct: 365 LMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPG 424

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG      L G   AP   G + A   PG        G       PG    P   GP+ 
Sbjct: 425 KPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAG 484

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PG        G        G    P   G +      G       PGP       G
Sbjct: 485 EAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAG 544

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PGP+  P +PG      +PG 
Sbjct: 545 AVGPAGAPGPAGPPGIPGERGVAGVPGG 572

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 65/264 (24%), Positives = 75/264 (28%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G    P   G        G        GP+      G       PGP       GP+ A
Sbjct: 591 DGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGA 650

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PG        GP       GP       GP       GP+      GP+     PG 
Sbjct: 651 AGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGA 710

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           +     PGPS     PGP  A    G        GP       G +      G       
Sbjct: 711 AGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGE 770

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PG +  P  PGP      PG    P   G    P + G    P   G +  P   GP   
Sbjct: 771 PGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGN 830

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
              PG + AP   G    P   GP
Sbjct: 831 VGNPGVNGAPGEAGRDGNPGNDGP 854

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 69/264 (26%), Positives = 79/264 (29%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G      LPGP+ A    GP       GP+      GPS  P   G        GP+ A
Sbjct: 492 RGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGA 551

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   GP   P   G +  P   G   AP L G + A    G    P   G        G 
Sbjct: 552 PGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGD 611

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  GP+      G       PGP       GP+ A   PG        GP      
Sbjct: 612 RGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGP 671

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            GP       GP       GP+      GP+     PG +     PGPS     PGP  A
Sbjct: 672 VGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGA 731

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G        GP       G 
Sbjct: 732 AGKEGIRGPRGDQGPVGRSGETGA 755

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 66/265 (24%), Positives = 77/265 (29%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GP       GP+      GPS  P   G        GP+ AP   GP   P   G +  
Sbjct: 510 RGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGV 569

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   G   AP L G + A    G    P   G        G        GP+      G 
Sbjct: 570 PGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGI 629

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                 PGP       GP+ A   PG        GP       GP       GP      
Sbjct: 630 RGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGA 689

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            GP+      GP+     PG +     PGPS     PGP  A    G        GP   
Sbjct: 690 AGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGR 749

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGPS 294
               G +      G       PG +
Sbjct: 750 SGETGATGPTGFVGEKGPTGEPGSA 774

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 62/264 (23%), Positives = 72/264 (27%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G      LPG    P   GP+      G    P   GP+  P  PG      L G   A
Sbjct: 381 AGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGA 440

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   G + A   PG        G       PG    P   GP+     PG        G 
Sbjct: 441 PGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGL 500

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G    P   G +      G       PGP       G       PGP+  P +
Sbjct: 501 PGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGI 560

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PG      +PG       PG        G   A  LPG   AP   G +      GP+  
Sbjct: 561 PGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGP 620

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G        G        G 
Sbjct: 621 AGPAGARGIRGERGEPGPVGPSGF 644

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 70/265 (26%), Positives = 81/265 (30%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
             G +  P   G      LPGP+ A    GP       GP+      GPS  P   G   
Sbjct: 482 PAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKG 541

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                GP+ AP   GP   P   G +  P   G   AP L G + A    G    P   G
Sbjct: 542 EAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIG 601

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
                   G        GP+      G       PGP       GP+ A   PG      
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERG 661

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             GP       GP       GP       GP+      GP+     PG +     PGPS 
Sbjct: 662 TKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAGPTGMTGFPGAAGRTGPPGPSG 721

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
               PGP  A    G        GP
Sbjct: 722 LTGPPGPPGAAGKEGIRGPRGDQGP 746

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 65/268 (24%), Positives = 75/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P  PG       PG        G      LPG    P   GP+      G    P   G
Sbjct: 359 RPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKG 418

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+  P  PG      L G   AP   G + A   PG        G       PG    P 
Sbjct: 419 PTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPG 478

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP+     PG        G        G    P   G +      G       PGP  
Sbjct: 479 PAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDG 538

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G       PGP+  P +PG      +PG       PG        G   A  LPG
Sbjct: 539 NKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPG 598

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
              AP   G +      GP+      G 
Sbjct: 599 AIGAPGPAGGAGDRGEGGPAGPAGPAGA 626

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 65/265 (24%), Positives = 78/265 (29%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
           L G   +  LPG      + GP+ +    GP+      G S  P  PG       PG   
Sbjct: 317 LRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPG 376

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                G      LPG    P   GP+      G    P   GP+  P  PG      L G
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAG 436

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
              AP   G + A   PG        G       PG    P   GP+     PG      
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHG 496

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             G        G    P   G +      G       PGP       G       PGP+ 
Sbjct: 497 EFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAG 556

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
            P +PG      +PG       PG 
Sbjct: 557 PPGIPGERGVAGVPGGKGEKGAPGL 581

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 61/268 (22%), Positives = 72/268 (26%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   GP+      G    P   GP+  P  PG      L G   AP   G + A   PG
Sbjct: 395 RPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPG 454

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G       PG    P   GP+     PG        G        G    P 
Sbjct: 455 LQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPG 514

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G +      G       PGP       G       PGP+  P +PG      +PG   
Sbjct: 515 ERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKG 574

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PG        G   A  LPG   AP   G +      GP+      G        G
Sbjct: 575 EKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERG 634

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   G +      G   A    G 
Sbjct: 635 EPGPVGPSGFAGPAGAAGQPGAKGERGT 662

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 60/268 (22%), Positives = 70/268 (26%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           EP  PG      L G   AP   G + A   PG        G       PG    P   G
Sbjct: 422 EPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAG 481

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+     PG        G        G    P   G +      G       PGP     
Sbjct: 482 PAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKG 541

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G       PGP+  P +PG      +PG       PG        G   A  LPG   
Sbjct: 542 EAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIG 601

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           AP   G +      GP+      G        G        G +      G   A    G
Sbjct: 602 APGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERG 661

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   GP       G +  P   G 
Sbjct: 662 TKGPVGEQGPVGPQGPVGAAGPPGPVGA 689

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 69.0 bits (169), Expect = 2e-12
 Identities = 66/270 (24%), Positives = 74/270 (27%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                 PG +     PGPS     PGP  A    G        GP       G +     
Sbjct: 702 TGMTGFPGAAGRTGPPGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGF 761

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G       PG +  P  PGP      PG    P   G    P + G    P   G +  
Sbjct: 762 VGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGP 821

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P   GP      PG + AP   G    P   GP      PG       PG +  P   GP
Sbjct: 822 PGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGP 881

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                 PG       PGP+ A    G        GP       G        G       
Sbjct: 882 VGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGH 941

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G    P L G       PG        GP
Sbjct: 942 NGLQGLPGLAGHHGDQGAPGAVGPAGPRGP 971

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 65/264 (24%), Positives = 73/264 (27%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
           PGPS     PGP  A    G        GP       G +      G       PG +  
Sbjct: 717 PGPSGLTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGP 776

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P  PGP      PG    P   G    P + G    P   G +  P   GP      PG 
Sbjct: 777 PGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGV 836

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           + AP   G    P   GP      PG       PG +  P   GP      PG       
Sbjct: 837 NGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGE 896

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PGP+ A    G        GP       G        G        G    P L G    
Sbjct: 897 PGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGD 956

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
              PG        GP+      G 
Sbjct: 957 QGAPGAVGPAGPRGPAGPSGPAGK 980

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 71/269 (26%), Positives = 83/269 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E    GP+  P   G        G +  P   G      LPGP+ A    GP       G
Sbjct: 461 EKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAG 520

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+      GPS  P   G        GP+ AP   GP   P   G +  P   G   AP 
Sbjct: 521 PTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPG 580

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
           L G + A    G    P   G        G        GP+      G       PGP  
Sbjct: 581 LRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVG 640

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                GP+ A   PG        GP       GP       GP       GP+      G
Sbjct: 641 PSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVGAAGPAGPRGDAG 700

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
           P+     PG +     PGPS     PGP 
Sbjct: 701 PTGMTGFPGAAGRTGPPGPSGLTGPPGPP 729

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 66/270 (24%), Positives = 79/270 (29%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
             E    G +      GP   P L G   +  LPG      + GP+ +    GP+     
Sbjct: 294 SGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGP 353

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G S  P  PG       PG        G      LPG    P   GP+      G    
Sbjct: 354 NGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGF 413

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P   GP+  P  PG      L G   AP   G + A   PG        G       PG 
Sbjct: 414 PGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGF 473

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
              P   GP+     PG        G        G    P   G +      G       
Sbjct: 474 QGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGP 533

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           PGP       G       PGP+  P +PG 
Sbjct: 534 PGPDGNKGEAGAVGPAGAPGPAGPPGIPGE 563

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 67/268 (25%), Positives = 79/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           +P  PGPS      G +      GP   P L G   +  LPG      + GP+ +    G
Sbjct: 287 QPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSG 346

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P+      G S  P  PG       PG        G      LPG    P   GP+    
Sbjct: 347 PAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRG 406

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G    P   GP+  P  PG      L G   AP   G + A   PG        G   
Sbjct: 407 EAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQG 466

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PG    P   GP+     PG        G        G    P   G +      G
Sbjct: 467 PAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIG 526

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PGP       G       PGP
Sbjct: 527 SRGPSGPPGPDGNKGEAGAVGPAGAPGP 554

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 63/268 (23%), Positives = 71/268 (26%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PGP  A    G        GP       G +      G       PG +  P  PG
Sbjct: 722 LTGPPGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPG 781

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P      PG    P   G    P + G    P   G +  P   GP      PG + AP 
Sbjct: 782 PQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPG 841

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G    P   GP      PG       PG +  P   GP      PG       PGP+ 
Sbjct: 842 EAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAG 901

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           A    G        GP       G        G        G    P L G       PG
Sbjct: 902 AVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPG 961

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   GP+      G        GP
Sbjct: 962 AVGPAGPRGPAGPSGPAGKIGRIGAVGP 989

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 60/268 (22%), Positives = 70/268 (26%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                G    P   GP+  P  PG      L G   AP   G + A   PG        G
Sbjct: 404 PRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKG 463

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                  PG    P   GP+     PG        G        G    P   G +    
Sbjct: 464 EQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTG 523

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G       PGP       G       PGP+  P +PG      +PG       PG   
Sbjct: 524 PIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRG 583

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G   A  LPG   AP   G +      GP+      G        G        G
Sbjct: 584 DTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSG 643

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +      G   A    G        GP
Sbjct: 644 FAGPAGAAGQPGAKGERGTKGPVGEQGP 671

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 57/268 (21%), Positives = 68/268 (25%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
              L G   AP   G + A   PG        G       PG    P   GP+     PG
Sbjct: 431 NVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPG 490

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G        G    P   G +      G       PGP       G      
Sbjct: 491 ERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAG 550

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGP+  P +PG      +PG       PG        G   A  LPG   AP   G + 
Sbjct: 551 APGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAG 610

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                GP+      G        G        G +      G   A    G        G
Sbjct: 611 DRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQG 670

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P       G +  P   G +      G 
Sbjct: 671 PVGPQGPVGAAGPPGPVGAAGPAGPRGD 698

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 59/264 (22%), Positives = 69/264 (26%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GP+  P  PG      L G   AP   G + A   PG        G       PG    
Sbjct: 417 KGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGL 476

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   GP+     PG        G        G    P   G +      G       PGP
Sbjct: 477 PGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGP 536

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                  G       PGP+  P +PG      +PG       PG        G   A  L
Sbjct: 537 DGNKGEAGAVGPAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGL 596

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PG   AP   G +      GP+      G        G        G +      G   A
Sbjct: 597 PGAIGAPGPAGGAGDRGEGGPAGPAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGA 656

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G        GP       G 
Sbjct: 657 KGERGTKGPVGEQGPVGPQGPVGA 680

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 55/268 (20%), Positives = 67/268 (25%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PG        G       PG    P   GP+     PG        G        G
Sbjct: 449 AQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARG 508

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   G +      G       PGP       G       PGP+  P +PG      
Sbjct: 509 ERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPGIPGERGVAG 568

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
           +PG       PG        G   A  LPG   AP   G +      GP+      G   
Sbjct: 569 VPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAGPAGARG 628

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G        G +      G   A    G        GP       G +  P   G
Sbjct: 629 IRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVGAAGPPGPVG 688

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +      G +    + G   A    GP
Sbjct: 689 AAGPAGPRGDAGPTGMTGFPGAAGRTGP 716

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 63/268 (23%), Positives = 73/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PG        G      LPG    P   GP+      G    P   GP+  P  PG
Sbjct: 368 PRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPG 427

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                 L G   AP   G + A   PG        G       PG    P   GP+    
Sbjct: 428 EKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAG 487

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG        G        G    P   G +      G       PGP       G   
Sbjct: 488 KPGERGLHGEFGLPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVG 547

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PGP+  P +PG      +PG       PG        G   A  LPG   AP   G
Sbjct: 548 PAGAPGPAGPPGIPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAG 607

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +      GP+      G        G 
Sbjct: 608 GAGDRGEGGPAGPAGPAGARGIRGERGE 635

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 60/269 (22%), Positives = 71/269 (26%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                 G        G   +   PGP     L G      LPG      LPG + +   PG
Sbjct: 755  ATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPG 814

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            P      PG    P   G       PG +     PG    P   G        G      
Sbjct: 815  PLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAG 874

Query: 146  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             PG        G        G        GP+ A    GPS    + G    P   G   
Sbjct: 875  PPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKG 934

Query: 206  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                 G +    LPG +      G   A    GP       GP+      G        G
Sbjct: 935  IKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGAAG 994

Query: 266  PSSAPDLPGPSSAPDLPGPSSAPDLPGPS 294
               +    GP+  P  PGP   P  P   
Sbjct: 995  IRGSQGSQGPAGPPGPPGPPGPPGPPSGG 1023

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 66/264 (25%), Positives = 77/264 (29%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
           PG    P  PGPS      G +      GP   P L G   +  LPG      + GP+ +
Sbjct: 282 PGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGS 341

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
               GP+      G S  P  PG       PG        G      LPG    P   GP
Sbjct: 342 RGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGP 401

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           +      G    P   GP+  P  PG      L G   AP   G + A   PG       
Sbjct: 402 AGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGE 461

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G       PG    P   GP+     PG        G        G    P   G +  
Sbjct: 462 KGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERGPPGERGAAGP 521

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G       PGP       G 
Sbjct: 522 TGPIGSRGPSGPPGPDGNKGEAGA 545

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 55/268 (20%), Positives = 68/268 (25%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G + A   PG        G       PG    P   GP+     PG        G
Sbjct: 440 APGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFG 499

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G    P   G +      G       PGP       G       PGP+  P 
Sbjct: 500 LPGPAGARGERGPPGERGAAGPTGPIGSRGPSGPPGPDGNKGEAGAVGPAGAPGPAGPPG 559

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
           +PG      +PG       PG        G   A  LPG   AP   G +      GP+ 
Sbjct: 560 IPGERGVAGVPGGKGEKGAPGLRGDTGATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAG 619

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G        G        G +      G   A    G        GP       G
Sbjct: 620 PAGPAGARGIRGERGEPGPVGPSGFAGPAGAAGQPGAKGERGTKGPVGEQGPVGPQGPVG 679

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +  P   G +      G +    + G 
Sbjct: 680 AAGPPGPVGAAGPAGPRGDAGPTGMTGF 707

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 62/270 (22%), Positives = 72/270 (26%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P      G        GP       G +      G       PG +  P  PGP      
Sbjct: 729 PGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGA 788

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PG    P   G    P + G    P   G +  P   GP      PG + AP   G    
Sbjct: 789 PGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGN 848

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P   GP      PG       PG +  P   GP      PG       PGP+ A    G 
Sbjct: 849 PGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGA 908

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                  GP       G        G        G    P L G       PG       
Sbjct: 909 VGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGP 968

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP+      G        GP+ A  + G 
Sbjct: 969 RGPAGPSGPAGKIGRIGAVGPAGAAGIRGS 998

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 71/270 (26%), Positives = 84/270 (31%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  G       PG       PG       PG   A  LPG       PGP+ A   
Sbjct: 96  KGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGS 155

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G        GP  +   PG   AP   G       PGP+      G    P L GP   
Sbjct: 156 DGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGP 215

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P   GP+  P   G +  P + G    P   G        G + A  L G        G 
Sbjct: 216 PGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGE 275

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           S     PG    P  PGPS      G +      GP   P L G   +  LPG      +
Sbjct: 276 SGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGV 335

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP+ +    GP+      G S  P  PG 
Sbjct: 336 MGPAGSRGTSGPAGVRGPNGDSGRPGEPGL 365

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 68/266 (25%), Positives = 77/266 (28%)

Query: 28  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 87
           +       P   G       PG S AP   G    P  PG        G    P  PG +
Sbjct: 1   EFDAKGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKA 60

Query: 88  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
                PG    P   G        G    P LPG        G       PG       P
Sbjct: 61  GEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEP 120

Query: 148 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 207
           G       PG   A  LPG       PGP+ A    G        GP  +   PG   AP
Sbjct: 121 GAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAP 180

Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
              G       PGP+      G    P L GP   P   GP+  P   G +  P + G  
Sbjct: 181 GPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAP 240

Query: 268 SAPDLPGPSSAPDLPGPSSAPDLPGP 293
             P   G        G + A  L G 
Sbjct: 241 GLPGPRGIPGPVGAAGATGARGLVGE 266

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 58/270 (21%), Positives = 68/270 (25%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P  P   G        G        G + A    G        G   +   PGP     L
Sbjct: 726 PGPPGAAGKEGIRGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGL 785

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G      LPG      LPG + +   PGP      PG    P   G       PG +  
Sbjct: 786 LGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGR 845

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
              PG    P   G        G       PG        G        G        GP
Sbjct: 846 DGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGP 905

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           + A    GPS    + G    P   G        G +    LPG +      G   A   
Sbjct: 906 AGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGP 965

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP       GP+      G        G 
Sbjct: 966 AGPRGPAGPSGPAGKIGRIGAVGPAGAAGI 995

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 67/265 (25%), Positives = 78/265 (29%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
             G S     PG    P  PGPS      G +      GP   P L G   +  LPG   
Sbjct: 272 SKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADG 331

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
              + GP+ +    GP+      G S  P  PG       PG        G      LPG
Sbjct: 332 VAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPG 391

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
               P   GP+      G    P   GP+  P  PG      L G   AP   G + A  
Sbjct: 392 IDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQG 451

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
            PG        G       PG    P   GP+     PG        G        G   
Sbjct: 452 PPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPGPAGARGERG 511

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
            P   G +      G       PGP
Sbjct: 512 PPGERGAAGPTGPIGSRGPSGPPGP 536

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.1 bits (164), Expect = 5e-12
 Identities = 60/268 (22%), Positives = 72/268 (26%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                 G + A    G        G   +   PGP     L G      LPG      LPG
Sbjct: 746  PVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPG 805

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
             + +   PGP      PG    P   G       PG +     PG    P   G      
Sbjct: 806  VAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKG 865

Query: 146  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
              G       PG        G        G        GP+ A    GPS    + G   
Sbjct: 866  ERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDG 925

Query: 206  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
             P   G        G +    LPG +      G   A    GP       GP+      G
Sbjct: 926  EPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIG 985

Query: 266  PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                    G   +    GP+  P  PGP
Sbjct: 986  AVGPAGAAGIRGSQGSQGPAGPPGPPGP 1013

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 62/270 (22%), Positives = 73/270 (27%)

Query: 24   PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                   GP       G +      G       PG +  P  PGP      PG    P  
Sbjct: 738  RGPRGDQGPVGRSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGS 797

Query: 84   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
             G    P + G    P   G +  P   GP      PG + AP   G    P   GP   
Sbjct: 798  RGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGR 857

Query: 144  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               PG       PG +  P   GP      PG       PGP+ A    G        GP
Sbjct: 858  DGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGP 917

Query: 204  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                   G        G        G    P L G       PG        GP+     
Sbjct: 918  QGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGP 977

Query: 264  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
             G        GP+ A  + G   +    GP
Sbjct: 978  AGKIGRIGAVGPAGAAGIRGSQGSQGPAGP 1007

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 63/268 (23%), Positives = 71/268 (26%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           EP  PG +  P   G    P   G   AP   G   +    GP       G +  P  PG
Sbjct: 119 EPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPG 178

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   GP   P   GP+      G        GP       G   A    G      
Sbjct: 179 APGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAG 238

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG      +PGP  A    G       PGP+ +    G    P   G    P   G   
Sbjct: 239 APGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEG 298

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G       PGP      PG    P   G +      G        G        G
Sbjct: 299 KRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSG 358

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P L GP   P  PG        GP
Sbjct: 359 RPGEPGLMGPRGFPGSPGNIGPAGKEGP 386

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 73/268 (27%), Positives = 86/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E   PG   A  LPG       PGP+ A    G        GP  +   PG   AP   G
Sbjct: 125 ENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKG 184

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                  PGP+      G    P L GP   P   GP+  P   G +  P + G    P 
Sbjct: 185 ELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPG 244

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G        G + A  L G        G S     PG    P  PGPS      G + 
Sbjct: 245 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTG 304

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                GP   P L G   +  LPG      + GP+ +    GP+      G S  P  PG
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPG 364

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PG        G      LPG 
Sbjct: 365 LMGPRGFPGSPGNIGPAGKEGPVGLPGI 392

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 60/264 (22%), Positives = 68/264 (25%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G   AP   G   +    GP       G +  P  PG        GP   P   GP+  
Sbjct: 141 RGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGP 200

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
               G        GP       G   A    G       PG      +PGP  A    G 
Sbjct: 201 RGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGA 260

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
                 PGP+ +    G    P   G    P   G        G       PGP      
Sbjct: 261 RGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGN 320

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PG    P   G +      G        G        G    P L GP   P  PG    
Sbjct: 321 PGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGP 380

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               GP   P + G        GP
Sbjct: 381 AGKEGPVGLPGIDGRPGPIGPAGP 404

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 64/268 (23%), Positives = 75/268 (27%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                 G +      G       PG +  P  PGP      PG    P   G    P + G
Sbjct: 749  RSGETGATGPTGFVGEKGPTGEPGSAGPPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAG 808

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                P   G +  P   GP      PG + AP   G    P   GP      PG      
Sbjct: 809  SVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERG 868

Query: 146  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             PG +  P   GP      PG       PGP+ A    G        GP       G   
Sbjct: 869  TPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPG 928

Query: 206  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                 G        G    P L G       PG        GP+      G        G
Sbjct: 929  DKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVG 988

Query: 266  PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            P+ A  + G   +    GP   P  PGP
Sbjct: 989  PAGAAGIRGSQGSQGPAGPPGPPGPPGP 1016

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.7 bits (163), Expect = 6e-12
 Identities = 60/264 (22%), Positives = 68/264 (25%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G    P   G   AP   G   +    GP       G +  P  PG        GP   
Sbjct: 132 KGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGN 191

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P   GP+      G        GP       G   A    G       PG      +PGP
Sbjct: 192 PGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGP 251

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
             A    G       PGP+ +    G    P   G    P   G        G       
Sbjct: 252 VGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGP 311

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
           PGP      PG    P   G +      G        G        G    P L GP   
Sbjct: 312 PGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGF 371

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
           P  PG        GP   P + G 
Sbjct: 372 PGSPGNIGPAGKEGPVGLPGIDGR 395

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 72/265 (27%), Positives = 85/265 (32%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
           LPG       PGP+ A    G        GP  +   PG   AP   G       PGP+ 
Sbjct: 137 LPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAG 196

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                G    P L GP   P   GP+  P   G +  P + G    P   G        G
Sbjct: 197 PAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAG 256

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
            + A  L G        G S     PG    P  PGPS      G +      GP   P 
Sbjct: 257 ATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPG 316

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
           L G   +  LPG      + GP+ +    GP+      G S  P  PG       PG   
Sbjct: 317 LRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPG 376

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
                G      LPG    P   GP
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGP 401

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 66/265 (24%), Positives = 77/265 (29%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
           L G        G S     PG    P  PGPS      G +      GP   P L G   
Sbjct: 263 LVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPG 322

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
           +  LPG      + GP+ +    GP+      G S  P  PG       PG        G
Sbjct: 323 SRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAG 382

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
                 LPG    P   GP+      G    P   GP+  P  PG      L G   AP 
Sbjct: 383 KEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPG 442

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             G + A   PG        G       PG    P   GP+     PG        G   
Sbjct: 443 PDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHGEFGLPG 502

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
                G    P   G +      G 
Sbjct: 503 PAGARGERGPPGERGAAGPTGPIGS 527

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.7 bits (163), Expect = 7e-12
 Identities = 72/271 (26%), Positives = 83/271 (30%)

Query: 23  RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
           +P  P   G        G    P LPG        G       PG       PG      
Sbjct: 68  KPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENG 127

Query: 83  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
            PG   A  LPG       PGP+ A    G        GP  +   PG   AP   G   
Sbjct: 128 TPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELG 187

Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
               PGP+      G    P L GP   P   GP+  P   G +  P + G    P   G
Sbjct: 188 PVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRG 247

Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
                   G + A  L G        G S     PG    P  PGPS      G +    
Sbjct: 248 IPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIG 307

Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
             GP   P L G   +  LPG      + GP
Sbjct: 308 PAGPPGPPGLRGNPGSRGLPGADGVAGVMGP 338

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.3 bits (162), Expect = 8e-12
 Identities = 60/271 (22%), Positives = 68/271 (25%)

Query: 23  RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
           R   P   G   +    GP       G +  P  PG        GP   P   GP+    
Sbjct: 143 RVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRG 202

Query: 83  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
             G        GP       G   A    G       PG      +PGP  A    G   
Sbjct: 203 EVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARG 262

Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
               PGP+ +    G    P   G    P   G        G       PGP      PG
Sbjct: 263 LVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPG 322

Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
               P   G +      G        G        G    P L GP   P  PG      
Sbjct: 323 SRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAG 382

Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
             GP   P + G        GP       G 
Sbjct: 383 KEGPVGLPGIDGRPGPIGPAGPRGEAGAIGF 413

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 71/268 (26%), Positives = 80/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P  PG +     PG    P   G        G    P LPG        G       PG
Sbjct: 53  PPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPG 112

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                  PG       PG   A  LPG       PGP+ A    G        GP  +  
Sbjct: 113 APGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAG 172

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG   AP   G       PGP+      G    P L GP   P   GP+  P   G + 
Sbjct: 173 PPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAG 232

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P + G    P   G        G + A  L G        G S     PG    P  PG
Sbjct: 233 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPG 292

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           PS      G +      GP   P L G 
Sbjct: 293 PSGEEGKRGSTGEIGPAGPPGPPGLRGN 320

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 71/264 (26%), Positives = 83/264 (31%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G    P LPG        G       PG       PG       PG   A  LPG    
Sbjct: 84  RGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGR 143

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PGP+ A    G        GP  +   PG   AP   G       PGP+      G 
Sbjct: 144 VGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGE 203

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
              P L GP   P   GP+  P   G +  P + G    P   G        G + A  L
Sbjct: 204 VGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGL 263

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            G        G S     PG    P  PGPS      G +      GP   P L G   +
Sbjct: 264 VGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGS 323

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
             LPG      + GP+ +    GP
Sbjct: 324 RGLPGADGVAGVMGPAGSRGTSGP 347

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.3 bits (162), Expect = 9e-12
 Identities = 72/268 (26%), Positives = 81/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E   PG    P   G        G    P LPG        G       PG       PG
Sbjct: 62  EDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPG 121

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                  PG   A  LPG       PGP+ A    G        GP  +   PG   AP 
Sbjct: 122 APGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPG 181

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G       PGP+      G    P L GP   P   GP+  P   G +  P + G   
Sbjct: 182 PKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPG 241

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G        G + A  L G        G S     PG    P  PGPS      G
Sbjct: 242 LPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRG 301

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            +      GP   P L G   +  LPG 
Sbjct: 302 STGEIGPAGPPGPPGLRGNPGSRGLPGA 329

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 65/268 (24%), Positives = 75/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
           E  +PGP  A   PG    P   G      L G +  P  PG    P  PG +  P   G
Sbjct: 74  ERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKG 133

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   G   AP   G   +    GP       G +  P  PG        GP   P 
Sbjct: 134 ARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPG 193

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP+      G        GP       G   A    G       PG      +PGP  
Sbjct: 194 PAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVG 253

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           A    G       PGP+ +    G    P   G    P   G        G       PG
Sbjct: 254 AAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPG 313

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P      PG    P   G +      G 
Sbjct: 314 PPGLRGNPGSRGLPGADGVAGVMGPAGS 341

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 72/268 (26%), Positives = 86/268 (32%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PGP+      G    P L GP   P   GP+  P   G +  P + G    P   G
Sbjct: 188 PVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRG 247

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G + A  L G        G S     PG    P  PGPS      G +    
Sbjct: 248 IPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIG 307

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP   P L G   +  LPG      + GP+ +    GP+      G S  P  PG   
Sbjct: 308 PAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMG 367

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PG        G      LPG    P   GP+      G    P   GP+  P  PG
Sbjct: 368 PRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPG 427

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                 L G   AP   G + A   PG 
Sbjct: 428 EKGNVGLAGARGAPGPDGNNGAQGPPGL 455

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 69/265 (26%), Positives = 78/265 (29%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
             G    P  PG +     PG    P   G        G    P LPG        G   
Sbjct: 47  PAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDG 106

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
               PG       PG       PG   A  LPG       PGP+ A    G        G
Sbjct: 107 LTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAG 166

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
           P  +   PG   AP   G       PGP+      G    P L GP   P   GP+  P 
Sbjct: 167 PIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPG 226

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             G +  P + G    P   G        G + A  L G        G S     PG   
Sbjct: 227 AKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVG 286

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
            P  PGPS      G +      GP
Sbjct: 287 QPGPPGPSGEEGKRGSTGEIGPAGP 311

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 71/268 (26%), Positives = 84/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PG       PG   A  LPG       PGP+ A    G        GP  +   PG
Sbjct: 116 VKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPG 175

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
              AP   G       PGP+      G    P L GP   P   GP+  P   G +  P 
Sbjct: 176 FPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPG 235

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
           + G    P   G        G + A  L G        G S     PG    P  PGPS 
Sbjct: 236 VAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSG 295

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G +      GP   P L G   +  LPG      + GP+ +    GP+      G
Sbjct: 296 EEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNG 355

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            S  P  PG       PG        G 
Sbjct: 356 DSGRPGEPGLMGPRGFPGSPGNIGPAGK 383

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 60/267 (22%), Positives = 69/267 (25%)

Query: 27  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
           P   G      L G +  P  PG    P  PG +  P   G    P   G   AP   G 
Sbjct: 93  PGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGA 152

Query: 87  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 146
             +    GP       G +  P  PG        GP   P   GP+      G       
Sbjct: 153 RGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGP 212

Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
            GP       G   A    G       PG      +PGP  A    G       PGP+ +
Sbjct: 213 VGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGS 272

Query: 207 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 266
               G    P   G    P   G        G       PGP      PG    P   G 
Sbjct: 273 KGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGV 332

Query: 267 SSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           +      G        G        G 
Sbjct: 333 AGVMGPAGSRGTSGPAGVRGPNGDSGR 359

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 70/270 (25%), Positives = 83/270 (30%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  G    P L GP   P   GP+  P   G +  P + G    P   G       
Sbjct: 195 AGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGA 254

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G + A  L G        G S     PG    P  PGPS      G +      GP   
Sbjct: 255 AGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGP 314

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
           P L G   +  LPG      + GP+ +    GP+      G S  P  PG       PG 
Sbjct: 315 PGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGS 374

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
                  G      LPG    P   GP+      G    P   GP+  P  PG      L
Sbjct: 375 PGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGL 434

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G   AP   G + A   PG        G 
Sbjct: 435 AGARGAPGPDGNNGAQGPPGLQGVQGEKGE 464

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 72/270 (26%), Positives = 85/270 (31%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
           P  P   G       PGP+      G    P L GP   P   GP+  P   G +  P +
Sbjct: 177 PGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGV 236

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            G    P   G        G + A  L G        G S     PG    P  PGPS  
Sbjct: 237 AGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGE 296

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               G +      GP   P L G   +  LPG      + GP+ +    GP+      G 
Sbjct: 297 EGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGD 356

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           S  P  PG       PG        G      LPG    P   GP+      G    P  
Sbjct: 357 SGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGP 416

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            GP+  P  PG      L G   AP   G 
Sbjct: 417 KGPTGEPGKPGEKGNVGLAGARGAPGPDGN 446

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 70/265 (26%), Positives = 78/265 (29%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            G    P  PG        G    P  PG +     PG    P   G        G    
Sbjct: 30  QGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGT 89

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
           P LPG        G       PG       PG       PG   A  LPG       PGP
Sbjct: 90  PGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGP 149

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           + A    G        GP  +   PG   AP   G       PGP+      G    P L
Sbjct: 150 AGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGL 209

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            GP   P   GP+  P   G +  P + G    P   G        G + A  L G    
Sbjct: 210 SGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGP 269

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGPS 294
               G S     PG    P  PGPS
Sbjct: 270 AGSKGESGNKGEPGAVGQPGPPGPS 294

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 68/268 (25%), Positives = 80/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P + G    P   G        G + A  L G        G S     PG    P  PG
Sbjct: 233 LPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPG 292

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           PS      G +      GP   P L G   +  LPG      + GP+ +    GP+    
Sbjct: 293 PSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRG 352

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G S  P  PG       PG        G      LPG    P   GP+      G   
Sbjct: 353 PNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIG 412

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   GP+  P  PG      L G   AP   G + A   PG        G       PG
Sbjct: 413 FPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPG 472

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P   GP+     PG        G 
Sbjct: 473 FQGLPGPAGPAGEAGKPGERGLHGEFGL 500

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 71/268 (26%), Positives = 84/268 (31%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
               PG   AP   G       PGP+      G    P L GP   P   GP+  P   G
Sbjct: 170 SAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKG 229

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            +  P + G    P   G        G + A  L G        G S     PG    P 
Sbjct: 230 AAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPG 289

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PGPS      G +      GP   P L G   +  LPG      + GP+ +    GP+ 
Sbjct: 290 PPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAG 349

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G S  P  PG       PG        G      LPG    P   GP+      G
Sbjct: 350 VRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAG 409

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P   GP+  P  PG      L G 
Sbjct: 410 AIGFPGPKGPTGEPGKPGEKGNVGLAGA 437

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 66/268 (24%), Positives = 75/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P  PG      +PGP  A   PG    P   G      L G +  P  PG    P  PG
Sbjct: 65  HPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPG 124

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            +  P   G    P   G   AP   G   +    GP       G +  P  PG      
Sbjct: 125 ENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKG 184

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP   P   GP+      G        GP       G   A    G       PG   
Sbjct: 185 ELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPG 244

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
              +PGP  A    G       PGP+ +    G    P   G    P   G        G
Sbjct: 245 PRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTG 304

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PGP      PG    P   G 
Sbjct: 305 EIGPAGPPGPPGLRGNPGSRGLPGADGV 332

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 70/268 (26%), Positives = 78/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P  PG        G    P  PG +     PG    P   G        G    P LPG
Sbjct: 35  PPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPG 94

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G       PG       PG       PG   A  LPG       PGP+ A  
Sbjct: 95  FKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARG 154

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G        GP  +   PG   AP   G       PGP+      G    P L GP  
Sbjct: 155 SDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVG 214

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   GP+  P   G +  P + G    P   G        G + A  L G        G
Sbjct: 215 PPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKG 274

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            S     PG    P  PGPS      G 
Sbjct: 275 ESGNKGEPGAVGQPGPPGPSGEEGKRGS 302

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 69/268 (25%), Positives = 82/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G +  P + G    P   G        G + A  L G        G S     PG
Sbjct: 224 LPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPG 283

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P  PGPS      G +      GP   P L G   +  LPG      + GP+ +  
Sbjct: 284 AVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRG 343

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP+      G S  P  PG       PG        G      LPG    P   GP+ 
Sbjct: 344 TSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAG 403

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                G    P   GP+  P  PG      L G   AP   G + A   PG        G
Sbjct: 404 PRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKG 463

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                  PG    P   GP+     PG 
Sbjct: 464 EQGPAGPPGFQGLPGPAGPAGEAGKPGE 491

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 67/268 (25%), Positives = 78/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                G + A  L G        G S     PG    P  PGPS      G +      G
Sbjct: 251 PVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAG 310

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
           P   P L G   +  LPG      + GP+ +    GP+      G S  P  PG      
Sbjct: 311 PPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRG 370

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG        G      LPG    P   GP+      G    P   GP+  P  PG   
Sbjct: 371 FPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKG 430

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
              L G   AP   G + A   PG        G       PG    P   GP+     PG
Sbjct: 431 NVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPG 490

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   G        G    P   G 
Sbjct: 491 ERGLHGEFGLPGPAGARGERGPPGERGA 518

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 71/271 (26%), Positives = 84/271 (30%)

Query: 23  RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
               P L GP   P   GP+  P   G +  P + G    P   G        G + A  
Sbjct: 203 EVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARG 262

Query: 83  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
           L G        G S     PG    P  PGPS      G +      GP   P L G   
Sbjct: 263 LVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPG 322

Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
           +  LPG      + GP+ +    GP+      G S  P  PG       PG        G
Sbjct: 323 SRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAG 382

Query: 203 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 262
                 LPG    P   GP+      G    P   GP+  P  PG      L G   AP 
Sbjct: 383 KEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPG 442

Query: 263 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
             G + A   PG        G       PG 
Sbjct: 443 PDGNNGAQGPPGLQGVQGEKGEQGPAGPPGF 473

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 58/270 (21%), Positives = 65/270 (24%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  GP       G +  P  PG        GP   P   GP+      G       
Sbjct: 153 RGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGP 212

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            GP       G   A    G       PG      +PGP  A    G       PGP+ +
Sbjct: 213 VGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGS 272

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
               G    P   G    P   G        G       PGP      PG    P   G 
Sbjct: 273 KGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGV 332

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           +      G        G        G    P L GP   P  PG        GP   P +
Sbjct: 333 AGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGI 392

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G        GP       G        G 
Sbjct: 393 DGRPGPIGPAGPRGEAGAIGFPGPKGPTGE 422

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 66/268 (24%), Positives = 78/268 (29%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P LPGP   P   G + A    G    P   G        G   A   PGP       G
Sbjct: 239 APGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEG 298

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
              +    GP+  P  PG    P   G   A  + G        G S    + GP+    
Sbjct: 299 KRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSG 358

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG        G   +P   GP+      G       PGP       G + A   PGP  
Sbjct: 359 RPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKG 418

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PG        G + A   PGP       GP     + G        GP     LPG
Sbjct: 419 PTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPG 478

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
           P+      G      L G    P   G 
Sbjct: 479 PAGPAGEAGKPGERGLHGEFGLPGPAGA 506

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 69/264 (26%), Positives = 82/264 (31%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            GP+  P   G +  P + G    P   G        G + A  L G        G S  
Sbjct: 219 AGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGN 278

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
              PG    P  PGPS      G +      GP   P L G   +  LPG      + GP
Sbjct: 279 KGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGP 338

Query: 150 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 209
           + +    GP+      G S  P  PG       PG        G      LPG    P  
Sbjct: 339 AGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGP 398

Query: 210 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 269
            GP+      G    P   GP+  P  PG      L G   AP   G + A   PG    
Sbjct: 399 IGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQGV 458

Query: 270 PDLPGPSSAPDLPGPSSAPDLPGP 293
               G       PG    P   GP
Sbjct: 459 QGEKGEQGPAGPPGFQGLPGPAGP 482

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 70/265 (26%), Positives = 78/265 (29%)

Query: 29  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 88
            PG S AP   G    P  PG        G    P  PG +     PG    P   G   
Sbjct: 20  PPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPGKPGRPGERGVPG 79

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
                G    P LPG        G       PG       PG       PG   A  LPG
Sbjct: 80  PQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPG 139

Query: 149 PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 208
                  PGP+ A    G        GP  +   PG   AP   G       PGP+    
Sbjct: 140 ERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAG 199

Query: 209 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 268
             G    P L GP   P   GP+  P   G +  P + G    P   G        G + 
Sbjct: 200 PRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATG 259

Query: 269 APDLPGPSSAPDLPGPSSAPDLPGP 293
           A  L G        G S     PG 
Sbjct: 260 ARGLVGEPGPAGSKGESGNKGEPGA 284

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 63/268 (23%), Positives = 74/268 (27%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                G    P   G        G   A   PGP       G   +    GP+  P  PG
Sbjct: 257 ATGARGLVGEPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPG 316

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   G   A  + G        G S    + GP+     PG        G   +P 
Sbjct: 317 LRGNPGSRGLPGADGVAGVMGPAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPG 376

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             GP+      G       PGP       G + A   PGP      PG        G + 
Sbjct: 377 NIGPAGKEGPVGLPGIDGRPGPIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAG 436

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
           A   PGP       GP     + G        GP     LPGP+      G      L G
Sbjct: 437 ARGAPGPDGNNGAQGPPGLQGVQGEKGEQGPAGPPGFQGLPGPAGPAGEAGKPGERGLHG 496

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
               P   G       PG   A    GP
Sbjct: 497 EFGLPGPAGARGERGPPGERGAAGPTGP 524

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 69/268 (25%), Positives = 77/268 (28%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P   G       PG S AP   G    P  PG        G    P  PG +     PG
Sbjct: 8   GPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKAGEDGHPG 67

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   G        G    P LPG        G       PG       PG      
Sbjct: 68  KPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENG 127

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
            PG   A  LPG       PGP+ A    G        GP  +   PG   AP   G   
Sbjct: 128 TPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELG 187

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
               PGP+      G    P L GP   P   GP+  P   G +  P + G    P   G
Sbjct: 188 PVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRG 247

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   G + A  L G        G 
Sbjct: 248 IPGPVGAAGATGARGLVGEPGPAGSKGE 275

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 71/270 (26%), Positives = 82/270 (30%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  GP   P  PGP       G        GP     LPG S     PG +    L
Sbjct: 165 AGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGPNGL 224

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           PG   A  LPG + AP LPGP   P   G + A    G    P   G        G   A
Sbjct: 225 PGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGA 284

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
              PGP       G   +    GP+  P  PG    P   G   A  + G        G 
Sbjct: 285 VGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGSRGT 344

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
           S    + GP+     PG        G   +P   GP+      G       PGP      
Sbjct: 345 SGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGP 404

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G + A   PGP      PG        G 
Sbjct: 405 RGEAGAIGFPGPKGPTGEPGKPGEKGNVGL 434

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 70/268 (26%), Positives = 82/268 (30%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
            P  PG      + G +    L G   AP + G   AP   G        G        G
Sbjct: 86  FPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVG 145

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
                   G   +    GP+      GP   P  PGP       G        GP     
Sbjct: 146 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVG 205

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
           LPG S     PG +    LPG   A  LPG + AP LPGP   P   G + A    G   
Sbjct: 206 LPGLSGPVGPPGNAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVG 265

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P   G        G   A   PGP       G   +    GP+  P  PG    P   G
Sbjct: 266 EPGPAGSKGESGNKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRG 325

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
              A  + G        G S    + GP
Sbjct: 326 LPGADGVAGVMGPAGSRGTSGPAGVRGP 353

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 63.6 bits (155), Expect = 8e-11
 Identities = 69/270 (25%), Positives = 80/270 (29%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                L G   AP + G   AP   G        G        G        G   +   
Sbjct: 102 NGLDGLTGQPGAPGVKGEPGAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGP 161

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            GP+      GP   P  PGP       G        GP     LPG S     PG +  
Sbjct: 162 VGPAGPIGSAGPPGFPGAPGPKGELGPVGNPGPAGPAGPRGEVGLPGLSGPVGPPGNAGP 221

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
             LPG   A  LPG + AP LPGP   P   G + A    G    P   G        G 
Sbjct: 222 NGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGE 281

Query: 204 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 263
             A   PGP       G   +    GP+  P  PG    P   G   A  + G       
Sbjct: 282 PGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMGPAGS 341

Query: 264 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
            G S    + GP+     PG        G 
Sbjct: 342 RGTSGPAGVRGPNGDSGRPGEPGLMGPRGF 371

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 56/268 (20%), Positives = 62/268 (23%)

Query: 26  EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
                G   A    G       PG      +PGP  A    G       PGP+ +    G
Sbjct: 218 NAGPNGLPGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESG 277

Query: 86  PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
               P   G    P   G        G       PGP      PG    P   G +    
Sbjct: 278 NKGEPGAVGQPGPPGPSGEEGKRGSTGEIGPAGPPGPPGLRGNPGSRGLPGADGVAGVMG 337

Query: 146 LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             G        G        G    P L GP   P  PG        GP   P + G   
Sbjct: 338 PAGSRGTSGPAGVRGPNGDSGRPGEPGLMGPRGFPGSPGNIGPAGKEGPVGLPGIDGRPG 397

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                GP       G        G    P   G        G        G    P L G
Sbjct: 398 PIGPAGPRGEAGAIGFPGPKGPTGEPGKPGEKGNVGLAGARGAPGPDGNNGAQGPPGLQG 457

Query: 266 PSSAPDLPGPSSAPDLPGPSSAPDLPGP 293
                   GP+  P   G        G 
Sbjct: 458 VQGEKGEQGPAGPPGFQGLPGPAGPAGE 485

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 61/249 (24%), Positives = 70/249 (28%)

Query: 26   EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 85
             P  PGP      PG    P   G    P + G    P   G +  P   GP      PG
Sbjct: 776  PPGPPGPQGLLGAPGFLGLPGSRGERGLPGVAGSVGEPGPLGIAGPPGARGPPGNVGNPG 835

Query: 86   PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
             + AP   G    P   GP      PG       PG +  P   GP      PG      
Sbjct: 836  VNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRG 895

Query: 146  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 205
             PGP+ A    G        GP       G        G        G    P L G   
Sbjct: 896  EPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHG 955

Query: 206  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
                PG        GP+      G        GP+ A  + G   +    GP   P  PG
Sbjct: 956  DQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPPGPPG 1015

Query: 266  PSSAPDLPG 274
            P   P    
Sbjct: 1016 PPGPPSGGY 1024

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 54.0 bits (130), Expect = 8e-08
 Identities = 47/217 (21%), Positives = 55/217 (25%)

Query: 24   PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
                  PGP      PG    P   G       PG +     PG    P   G       
Sbjct: 807  AGSVGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGE 866

Query: 84   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
             G       PG        G        G        GP+ A    GPS    + G    
Sbjct: 867  RGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGE 926

Query: 144  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
            P   G        G +    LPG +      G   A    GP       GP+      G 
Sbjct: 927  PGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGA 986

Query: 204  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
                   G   +    GP+  P  PGP   P  P   
Sbjct: 987  VGPAGAAGIRGSQGSQGPAGPPGPPGPPGPPGPPSGG 1023

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 51/204 (25%), Positives = 56/204 (27%)

Query: 91  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 150
           +       P   G       PG S AP   G    P  PG        G    P  PG +
Sbjct: 1   EFDAKGGGPGPMGLMGPRGPPGASGAPGPQGFQGPPGEPGEPGQTGPAGARGPPGPPGKA 60

Query: 151 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 210
                PG    P   G        G    P LPG        G       PG       P
Sbjct: 61  GEDGHPGKPGRPGERGVPGPQGARGFPGTPGLPGFKGIRGHNGLDGLTGQPGAPGVKGEP 120

Query: 211 GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
           G       PG   A  LPG       PGP+ A    G        GP  +   PG   AP
Sbjct: 121 GAPGENGTPGQKGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAP 180

Query: 271 DLPGPSSAPDLPGPSSAPDLPGPS 294
              G       PGP+      G  
Sbjct: 181 GPKGELGPVGNPGPAGPAGPRGEV 204

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 52/215 (24%), Positives = 60/215 (27%)

Query: 24   PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
              EP   G +  P   GP      PG + AP   G    P   GP      PG       
Sbjct: 810  VGEPGPLGIAGPPGARGPPGNVGNPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGT 869

Query: 84   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
            PG +  P   GP      PG       PGP+ A    G        GP       G    
Sbjct: 870  PGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVGPAGAVGPRGPSGPQGIRGDDGEPGD 929

Query: 144  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
                G        G    P L G       PG        GP+      G        GP
Sbjct: 930  KGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVGPAGPRGPAGPSGPAGKIGRIGAVGP 989

Query: 204  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
            + A  + G   +    GP   P  PGP   P    
Sbjct: 990  AGAAGIRGSQGSQGPAGPPGPPGPPGPPGPPSGGY 1024

>1y0f_B Collagen I alpha 2; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_B 3hqv_B 3hr2_B Length = 1026

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 42/180 (23%), Positives = 48/180 (26%)

Query: 23   RPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 82
            R   P   GP      PG       PG +  P   GP      PG       PGP+ A  
Sbjct: 845  RDGNPGNDGPPGRDGQPGHKGERGTPGNAGPPGAVGPVGPVGEPGKLGNRGEPGPAGAVG 904

Query: 83   LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
              G        GP       G        G        G    P L G       PG   
Sbjct: 905  PAGAVGPRGPSGPQGIRGDDGEPGDKGDKGIKGDRGHNGLQGLPGLAGHHGDQGAPGAVG 964

Query: 143  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
                 GP+      G        GP+ A  + G   +    GP   P  PGP   P    
Sbjct: 965  PAGPRGPAGPSGPAGKIGRIGAVGPAGAAGIRGSQGSQGPAGPPGPPGPPGPPGPPSGGY 1024

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 70.9 bits (173), Expect = 4e-13
 Identities = 63/293 (21%), Positives = 90/293 (30%), Gaps = 18/293 (6%)

Query: 9    VFTEADYLPSTVTERPL---EPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 65
            V  + + L   + E+ +   E    G  +           DL         P   S  + 
Sbjct: 1443 VMIDEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSND 1502

Query: 66   PGPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPS-SAPDLPGPSSAPDLPGPS 123
                      G           +  + P  P      PG S ++P     S A     PS
Sbjct: 1503 AMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPS 1562

Query: 124  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 183
             +P  P  S       P+S    P  S +     PS +P  P  S       P+S    P
Sbjct: 1563 YSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621

Query: 184  -GPSSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPG-----PSSAPDLPGPS-SAPD 235
              PS +P  P  S       P+S    P  PS +P  P      PS +P  P  S ++P 
Sbjct: 1622 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1681

Query: 236  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 288
                S +     P+ +P  P  S       P  +P  P  S   D    +   
Sbjct: 1682 YSPTSPSYSPTSPNYSPTSPSYSPTS----PGYSPGSPAYSPKQDEQKHNENE 1730

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 64.3 bits (156), Expect = 4e-11
 Identities = 57/264 (21%), Positives = 78/264 (29%), Gaps = 16/264 (6%)

Query: 46   DLPGPSSAPDLPGPSSAPDLPGPSSAP-DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 104
            D             +   D       P          DL         P   S  +    
Sbjct: 1446 DEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMA 1505

Query: 105  SSAPDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAP 162
                   G           +  + P  P      PG S ++P     S A     PS +P
Sbjct: 1506 GGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSP 1565

Query: 163  DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GP 221
              P  S       P+S    P  S +     PS +P  P  S       P+S    P  P
Sbjct: 1566 TSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1624

Query: 222  SSAPDLPGPSSAPDLPGPSSAPDLPGPSS---APDLPG-----PSSAPDLPGPS-SAPDL 272
            S +P    PS +P  P  S       P+S   +P  P      PS +P  P  S ++P  
Sbjct: 1625 SYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1682

Query: 273  PGPSSAPDLPGPSSAPDLPGPSST 296
               S +     P+ +P  P  S T
Sbjct: 1683 SPTSPSYSPTSPNYSPTSPSYSPT 1706

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 64.0 bits (155), Expect = 6e-11
 Identities = 55/271 (20%), Positives = 80/271 (29%), Gaps = 10/271 (3%)

Query: 1    MIAPFDKHVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 60
             + P+          L     E    P +   S+     G ++        +        
Sbjct: 1469 GVTPYSNESGLVNADLDVK-DELMFSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYG 1527

Query: 61   SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
             AP  PG   +     P+S P     S A     PS +P  P  S       P+S    P
Sbjct: 1528 EAPTSPGFGVSSPGFSPTS-PTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1586

Query: 121  GPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGPSSAPDLPGPSSA 179
              S +     PS +P  P  S       P+S    P  PS +P    PS +P  P  S  
Sbjct: 1587 T-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPT 1643

Query: 180  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 239
                 P+S    P   +        S        ++P     S +     P+ +P  P  
Sbjct: 1644 SPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSY 1703

Query: 240  SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAP 270
            S       P  +P  P  S   D    +   
Sbjct: 1704 SPTS----PGYSPGSPAYSPKQDEQKHNENE 1730

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 62.4 bits (151), Expect = 2e-10
 Identities = 65/253 (25%), Positives = 87/253 (34%), Gaps = 14/253 (5%)

Query: 30   PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
            P      +         L G +S P     S     P  S+     G +S      PS +
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAAS-PYKGVQSPGYTSPFSSAMSPGYGLTS------PSYS 1559

Query: 90   PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPG 148
            P  PG S++P     S +     PS +P  P  S       P+S +     PS +P  P 
Sbjct: 1560 PSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPS 1619

Query: 149  PSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSA 206
             S       P+S +     PS +P  P  S  P  P  S       P+S    P  PS +
Sbjct: 1620 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYS 1677

Query: 207  PDLPGPSSAPDLPGPSSAPDLPG-PSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLP 264
            P  P  S       P+S    P  PS +P  P  S   P     S +     PS +P  P
Sbjct: 1678 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1737

Query: 265  GPSSAPDLPGPSS 277
              S       P+S
Sbjct: 1738 SYSPTSPSYSPTS 1750

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 61/247 (24%), Positives = 85/247 (34%), Gaps = 13/247 (5%)

Query: 18   STVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 77
             +             +++P     S     P  S+     G +S      PS +P  PG 
Sbjct: 1512 GSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTS------PSYSPSSPGY 1565

Query: 78   SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPD 136
            S++P     S +     PS +P  P  S       P+S +     PS +P  P  S    
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625

Query: 137  LPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP-GPSSAPDLPGP 194
               P+S +     PS +P  P  S  P  P  S       P+S    P  PS +P  P  
Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683

Query: 195  SSAPDLPGPSSAPDLPG-PSSAPDLPGPSSA-PDLPGPSSAPDLPGPSSAPDLPGPSSAP 252
            S       P+S    P  PS +P  P  S   P     S +     PS +P  P  S   
Sbjct: 1684 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1743

Query: 253  DLPGPSS 259
                P+S
Sbjct: 1744 PSYSPTS 1750

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 15/170 (8%), Positives = 25/170 (14%)

Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 197
           P                              S   +  P               P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 198 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 257
                 ++            L  P++      P            P        P     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 258 SSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSTVLGSYLGEAGH 307
            +   +        L               P +  P   ++ S L  A  
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASP 179

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 17/176 (9%), Positives = 29/176 (16%), Gaps = 1/176 (0%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 89
           P                              S   +  P               P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 90  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 149
                 ++            L  P++      P            P        P     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 150 SSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 204
            +   +        L   P    DL  P     +P           +++PD    +
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 17/176 (9%), Positives = 29/176 (16%), Gaps = 1/176 (0%)

Query: 57  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 116
           P                              S   +  P               P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 117 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 176
                 ++            L  P++      P            P        P     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 177 SSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 231
            +   +        L   P    DL  P     +P           +++PD    +
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 17/176 (9%), Positives = 29/176 (16%), Gaps = 1/176 (0%)

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
           P                              S   +  P               P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 144 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 203
                 ++            L  P++      P            P        P     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 204 SSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 258
            +   +        L   P    DL  P     +P           +++PD    +
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 8e-06
 Identities = 17/176 (9%), Positives = 29/176 (16%), Gaps = 1/176 (0%)

Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 170
           P                              S   +  P               P     
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 171 PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 230
                 ++            L  P++      P            P        P     
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 231 SSAPDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 285
            +   +        L   P    DL  P     +P           +++PD    +
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 17/173 (9%), Positives = 30/173 (17%), Gaps = 1/173 (0%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL 83
            L+                         S   +  P               P        
Sbjct: 13  QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQ 72

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 143
              ++            L  P++      P            P        P      + 
Sbjct: 73  IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132

Query: 144 PDLPGPSSAPDLPG-PSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
             +        L   P    DL  P     +P           +++PD    +
Sbjct: 133 RPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRST 185

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 4/133 (3%)

Query: 24  PLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSSAPD 82
             +  +        L  P+    +  PS  P L PG  S   L  P S    P     P 
Sbjct: 10  DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69

Query: 83  LPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSS 142
               SS     GP S      P+       P  +  +   SS+ D+  P     +    +
Sbjct: 70  FSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPA 126

Query: 143 APDLPGPSSAPDL 155
            P     S    +
Sbjct: 127 HPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 30  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 88
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 89  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 148
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 149 PSSAPDLPGPSSAPDL 164
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 39  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 97
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 98  APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 157
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 158 PSSAPDLPGPSSAPDL 173
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 48  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 106
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 107 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 166
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 167 PSSAPDLPGPSSAPDL 182
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 57  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 115
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 116 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 175
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 176 PSSAPDLPGPSSAPDL 191
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 66  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 124
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 125 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 184
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 185 PSSAPDLPGPSSAPDL 200
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 75  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 133
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 134 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 193
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 194 PSSAPDLPGPSSAPDL 209
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 84  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 142
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 143 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 202
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 203 PSSAPDLPGPSSAPDL 218
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 93  PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 151
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 152 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 211
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 212 PSSAPDLPGPSSAPDL 227
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 102 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 160
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 161 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 220
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 221 PSSAPDLPGPSSAPDL 236
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 111 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 169
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 170 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 229
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 230 PSSAPDLPGPSSAPDL 245
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 120 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 178
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 179 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 238
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 239 PSSAPDLPGPSSAPDL 254
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 129 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 187
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 188 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 247
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 248 PSSAPDLPGPSSAPDL 263
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 138 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 196
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 197 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 256
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 257 PSSAPDLPGPSSAPDL 272
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 147 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 205
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 206 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 265
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 266 PSSAPDLPGPSSAPDL 281
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 3e-06
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 4/136 (2%)

Query: 156 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 214
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 215 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 274
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 275 PSSAPDLPGPSSAPDL 290
             + P     S    +
Sbjct: 124 VPAHPSGNMASFTKHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 48.2 bits (114), Expect = 4e-06
 Identities = 28/133 (21%), Positives = 38/133 (28%), Gaps = 4/133 (3%)

Query: 165 PGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDL-PGPSSAPDLPGPSSAPDLPGPSS 223
                   +        L  P+    +  PS  P L PG  S   L  P S    P    
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGM 66

Query: 224 APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPG 283
            P     SS     GP S      P+       P  +  +   SS+ D+  P     +  
Sbjct: 67  GPPFSVISSP---MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 284 PSSAPDLPGPSST 296
             + P     S T
Sbjct: 124 VPAHPSGNMASFT 136

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 52/157 (33%)

Query: 333 QTLRFLHFSCTSLVVTR----------ATVVKLPL----YILTVEDDTVILL--FIETFI 376
           +     + SC  L+ TR          AT   + L      LT  D+   LL  +++   
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYLDCRP 315

Query: 377 Q-LPQQAYTTNSFAPM----------------DPSKDDTVILL--FIKTCI-QLP----Q 412
           Q LP++  TTN   P                 D  K      L   I++ +  L     +
Sbjct: 316 QDLPREVLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 413 QAYTTNSFA--PMDRWTHPSKAATFLGLLDEDTDEED 447
           + +  +  +  P      P+     L L+  D  + D
Sbjct: 373 KMF--DRLSVFPPSAHI-PTIL---LSLIWFDVIKSD 403

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 37/129 (28%), Gaps = 1/129 (0%)

Query: 34  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 93
           S+      SS     G          +SA      +  P +  P  AP  P   +A + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 94  GPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 152
              +   +       P  PG +S          P    P+SAP   G +       P   
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 153 PDLPGPSSA 161
           PD       
Sbjct: 123 PDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 37/129 (28%), Gaps = 1/129 (0%)

Query: 61  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 120
           S+      SS     G          +SA      +  P +  P  AP  P   +A + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 121 GPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 179
              +   +       P  PG +S          P    P+SAP   G +       P   
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 180 PDLPGPSSA 188
           PD       
Sbjct: 123 PDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 37/129 (28%), Gaps = 1/129 (0%)

Query: 88  SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 147
           S+      SS     G          +SA      +  P +  P  AP  P   +A + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 148 GPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 206
              +   +       P  PG +S          P    P+SAP   G +       P   
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 207 PDLPGPSSA 215
           PD       
Sbjct: 123 PDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 37/129 (28%), Gaps = 1/129 (0%)

Query: 115 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 174
           S+      SS     G          +SA      +  P +  P  AP  P   +A + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 175 GPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 233
              +   +       P  PG +S          P    P+SAP   G +       P   
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 234 PDLPGPSSA 242
           PD       
Sbjct: 123 PDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 26/129 (20%), Positives = 37/129 (28%), Gaps = 1/129 (0%)

Query: 142 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 201
           S+      SS     G          +SA      +  P +  P  AP  P   +A + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 202 GPSSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSA 260
              +   +       P  PG +S          P    P+SAP   G +       P   
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPE 122

Query: 261 PDLPGPSSA 269
           PD       
Sbjct: 123 PDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 25/127 (19%), Positives = 35/127 (27%), Gaps = 1/127 (0%)

Query: 27  PDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGP 86
                 SS     G          +SA      +  P +  P  AP  P   +A + P  
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 87  SSAPDLPGPS-SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPD 145
            +   +       P  PG +S          P    P+SAP   G +       P   PD
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPD 124

Query: 146 LPGPSSA 152
                  
Sbjct: 125 PVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 42  SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 99
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 100 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 159
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 160 SAPDLPGPSSA 170
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 51  SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 108
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 109 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 168
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 169 SAPDLPGPSSA 179
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 69  SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 126
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 127 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 186
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 187 SAPDLPGPSSA 197
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 78  SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 135
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 136 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 195
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 196 SAPDLPGPSSA 206
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 96  SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 153
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 154 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 213
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 214 SAPDLPGPSSA 224
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 105 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 162
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 163 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 222
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 223 SAPDLPGPSSA 233
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 123 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 180
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 181 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 240
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 241 SAPDLPGPSSA 251
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 132 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 189
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 190 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 249
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 250 SAPDLPGPSSA 260
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 25/131 (19%), Positives = 34/131 (25%), Gaps = 4/131 (3%)

Query: 150 SSAPDLPGPSS-APDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS-SAPDLPGPSSAP 207
           SS       S   P              +++  L        +P P+   P  P   + P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 208 DLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS 267
           D     S          P  PG +S          P    P+SAP   G +       P 
Sbjct: 63  DTVTGDSVLQRILR--GPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

Query: 268 SAPDLPGPSSA 278
             PD       
Sbjct: 121 PEPDPVRVEEV 131

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 4/97 (4%)

Query: 196 SAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLP 255
           +AP  PG           +A   P   + P L    +    P  +  P  P P       
Sbjct: 3   AAPTSPGTPGVA--AATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60

Query: 256 GPSSAPDLPGPSSAPDLPGPSSAPD--LPGPSSAPDL 290
              +A          D+   ++  +  +  P +   +
Sbjct: 61  ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATV 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	448
3hqv_A	1056	Collagen alpha-1(I) chain; native, in SITU, molecu	99.96
3hqv_A	1056	Collagen alpha-1(I) chain; native, in SITU, molecu	99.96
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	99.95
3hqv_B	1028	Collagen alpha-2(I) chain; native, in SITU, molecu	99.95
4ae2_A	256	Procollagen III, collagen alpha-1(III) chain; stru	99.84

>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_A

Probab=99.96  E-value=8.7e-27  Score=265.34  Aligned_cols=7  Identities=14%  Similarity=0.320  Sum_probs=3.1

Q ss_pred             Cccccce
Q psy16323          4 PFDKHVF   10 (448)
Q Consensus         4 ~~~~~~~   10 (448)
                      =||.+..
T Consensus         5 g~~~~~~   11 (1056)
T 3hqv_A            5 GYDEKSA   11 (1056)
T ss_pred             CcCCCcC
Confidence            3444443

>3hqv_A Collagen alpha-1(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_A

Probab=99.96  E-value=7.5e-27  Score=265.88  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=20.8

Q ss_pred             cceeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16323          8 HVFTEADYLPSTVTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPD   55 (448)
Q Consensus         8 ~~~~~~~~~~~~~~~~pg~pg~pG~~G~~G~pG~~G~~G~~G~~G~~G   55 (448)
                      +-|.|.+. -.++.+..|+.+.+|.+|.+|.+|++|.+|.+|++|.+|
T Consensus         4 ~g~~~~~~-g~~~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G   50 (1056)
T 3hqv_A            4 YGYDEKSA-GVSVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPG   50 (1056)
T ss_pred             CCcCCCcC-CcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            33444422 334445555444444444444444444444444444433

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 1ygv_A 3hqv_A 3hr2_A

Probab=99.95  E-value=1.7e-26  Score=261.84  Aligned_cols=8  Identities=13%  Similarity=0.194  Sum_probs=3.7

Q ss_pred             CCccccce
Q psy16323          3 APFDKHVF   10 (448)
Q Consensus         3 ~~~~~~~~   10 (448)
                      .-||.+.-
T Consensus         4 ~~~~~~~~   11 (1054)
T 1y0f_A            4 YGYDEKST   11 (1054)
T ss_pred             cccccccc
Confidence            34555443

>3hqv_B Collagen alpha-2(I) chain; native, in SITU, molecular envelope, triple-helical, supermolecular, supramolecular, packing structure; 5.16A {Rattus norvegicus} PDB: 3hr2_B

Probab=99.95  E-value=3.9e-26  Score=259.46  Aligned_cols=50  Identities=28%  Similarity=0.564  Sum_probs=22.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16323         20 VTERPLEPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPSSAPDLPGPS   69 (448)
Q Consensus        20 ~~~~pg~pg~pG~~G~~G~pG~~G~~G~~G~~G~~G~pG~~G~~G~pG~~   69 (448)
                      +++.++..++.|++|.+|+.|.+|.+|++|++|++|.+|..|++|.+|+.
T Consensus         7 ~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~G~~   56 (1028)
T 3hqv_B            7 VSAGPGPMGLMGPRGPPGAVGAPGPQGFQGPAGEPGEPGQTGPAGSRGPA   56 (1028)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            34445555554444444444444444444444444444433333333333

>4ae2_A Procollagen III, collagen alpha-1(III) chain; structural protein, fibrillar collagen, extracellular matrix fibrosis; 1.68A {Homo sapiens} PDB: 4aej_A* 4ak3_A

Probab=99.84  E-value=5.7e-22  Score=193.65  Aligned_cols=138  Identities=22%  Similarity=0.232  Sum_probs=102.9

Q ss_pred             ccccccCCCCCCCCCCCCCCCCCceeee-------------------------eccchhHHHhhhhhhccceeeeeccee
Q psy16323        297 VLGSYLGEAGHQKSPKGLEPKPAQISFV-------------------------LNIFANFHQTLRFLHFSCTSLVVTRAT  351 (448)
Q Consensus       297 ~l~sl~g~~g~~~sp~g~~~~P~~~~~v-------------------------i~~~~n~~~~~rfv~~~c~~i~~~r~t  351 (448)
                      .|++|+.+|+.+++|.|++.+|+++|.+                         |.+||||+..     ++|  |+..+.+
T Consensus        27 ~l~~l~~~i~~~~~P~Gt~~nPARtC~dl~~~~p~~~sG~YwIDPngg~~~dai~V~Cnmt~g-----~tc--i~~~~~~   99 (256)
T 4ae2_A           27 SLKSVNGQIESLISPDGSRKNPARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETG-----ETC--ISANPLN   99 (256)
T ss_dssp             --------------CCSSSSSCBSCHHHHHHHCTTCCSEEEEECTTCSSGGGCEEEEEETTTT-----EEE--ECBSSCE
T ss_pred             HHHHHHHHHHhccCCCCCCCCccccHHHHHHcCCCCCCCCEEECCCCCCCCCCEEEEeEeecC-----CcE--Eeccccc
Confidence            3888899999999999999999999998                         4778999765     788  6666677


Q ss_pred             EeeceeeeeEeccCCceeehhhhhCCCCceeccCCCCCCCCCCCCchhHHHHHHHhhcCCCccee---ecccccCccCCC
Q psy16323        352 VVKLPLYILTVEDDTVILLFIETFIQLPQQAYTTNSFAPMDPSKDDTVILLFIKTCIQLPQQAYT---TNSFAPMDRWTH  428 (448)
Q Consensus       352 v~~~~~~~~~vrkDqk~~WF~Et~~~g~qf~Y~~~~~~~~~~~~d~~vQL~FLrLlS~~A~Q~iT---~nS~a~~d~~~~  428 (448)
                      +..+.||... .++++++||+++|+.+++|.|....+..    ....+||+||||||.+|+|+||   +||++|+|....
T Consensus       100 ~~~~~~~~~~-~~~~~~~wf~~~~~gg~~~~Y~~~~~~~----~~~~~QL~fL~llS~~c~Q~ItY~C~~S~~~~d~~~~  174 (256)
T 4ae2_A          100 VPRKHWWTDS-SAEKKHVWFGESMDGGFQFSYGNPELPE----DVLDVQLAFLRLLSSRASQQITYHCKNSIAYMDQASG  174 (256)
T ss_dssp             EEEECCCCC-----CCCCCHHHHSTTCCCCCBSCTTSCH----HHHHHHHHHHHHHCSCEEEEEEEEEESCCSSCBTTTT
T ss_pred             cceeeeeccC-CCCCCceeeeeeecCCeeeeecccccCC----CcCHHHHHHHHHhhhceEEEEEEEeCCCcccccCCCC
Confidence            7777777644 5788999999999999999997654422    2467999999999999999999   689999999886


Q ss_pred             C-CCceEEeccCccccccc
Q psy16323        429 P-SKAATFLGLLDEDTDEE  446 (448)
Q Consensus       429 ~-~ka~~l~g~nd~e~~~~  446 (448)
                      + +++++|+++||+|+.++
T Consensus       175 ~~~~a~~~~g~N~~~~~~~  193 (256)
T 4ae2_A          175 NVKKALKLMGSNEGEFKAE  193 (256)
T ss_dssp             BCTTCCEEECSSSCEEBSS
T ss_pred             CccccEEEEecCCCEEecC
Confidence            6 79999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00