Psyllid ID: psy16344

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MLRQTLLATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS
cHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEccccccccccccccccEEcHHHHHHHccccccccHHHHHHHHccccHHHHHHHHHHHHcc
cHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcEcccccccccHHHHHHHHHHccHHHHHHHHHHHHHcccccEEEEEEEEccccEEEEEEEEccccHHHHHccEEEEEEEccHHHcHHHHcccHHHHHHHHcccEcHHHHHHHHHHcccc
MLRQTLLATRKivtspilqgpielpkldygykdlepvinseimelhhskhhQTYVTNYNAALEKLKAAVANNDASAIVqlgpalkfnggghinHALFWKMLnknggkpsddLSNAIKASFGSLDKLKDELTAASVGiqgsgwgwlgydpksksLKIATtanqdplfettglkplfgidVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS
mlrqtllatrkivtspilqgpielpkLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS
MLRQTLLATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS
*****LLATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLN*****************FGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYA*****
******************QGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKA***
MLRQTLLATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS
MLRQTLLATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAK**
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRQTLLATRKIVTSPILQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query218 2.2.26 [Sep-21-2011]
P31161221 Superoxide dismutase [Mn] yes N/A 0.986 0.972 0.592 2e-71
Q00637217 Superoxide dismutase [Mn] yes N/A 0.967 0.972 0.572 1e-68
P04179222 Superoxide dismutase [Mn] yes N/A 0.885 0.869 0.603 7e-65
Q8HXP6222 Superoxide dismutase [Mn] N/A N/A 0.885 0.869 0.603 8e-65
P41977218 Superoxide dismutase [Mn] no N/A 0.977 0.977 0.554 1e-64
Q8HXP1198 Superoxide dismutase [Mn] N/A N/A 0.885 0.974 0.608 2e-64
Q8HXP0198 Superoxide dismutase [Mn] yes N/A 0.885 0.974 0.608 2e-64
Q8HXP3222 Superoxide dismutase [Mn] N/A N/A 0.885 0.869 0.597 2e-64
P41982202 Superoxide dismutase [Mn] yes N/A 0.885 0.955 0.608 2e-64
Q8HXP7198 Superoxide dismutase [Mn] yes N/A 0.885 0.974 0.603 2e-64
>sp|P31161|SODM1_CAEEL Superoxide dismutase [Mn] 1, mitochondrial OS=Caenorhabditis elegans GN=sod-2 PE=1 SV=1 Back     alignment and function desciption
 Score =  268 bits (685), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 160/221 (72%), Gaps = 6/221 (2%)

Query: 1   MLRQTLLATRKIVTSPI-----LQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYV 55
           ML+ T+    K+V  PI     ++    LP L Y Y DLEPVI+ EIM+LHH KHH TYV
Sbjct: 1   MLQNTVRCVSKLV-QPITGVAAVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYV 59

Query: 56  TNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNA 115
            N N   EKL  AV+  +    + L PALKFNGGGHINH++FW  L K+GG+PS +L  A
Sbjct: 60  NNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTA 119

Query: 116 IKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLF 175
           IK+ FGSLD L+ +L+A++V +QGSGWGWLGY PK K LK+AT ANQDPL  TTGL PLF
Sbjct: 120 IKSDFGSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPLEATTGLVPLF 179

Query: 176 GIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAK 216
           GIDVWEHAYYLQYKNVRP+YV AI+ I NW  ++E +AKA+
Sbjct: 180 GIDVWEHAYYLQYKNVRPDYVNAIWKIANWKNVSERFAKAQ 220
Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 1EC: 5EC: .EC: 1EC: .EC: 1
>sp|Q00637|SODM_DROME Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3 Back     alignment and function description
>sp|P04179|SODM_HUMAN Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2 Back     alignment and function description
>sp|Q8HXP6|SODM_PONPY Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3 Back     alignment and function description
>sp|P41977|SODM2_CAEEL Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2 Back     alignment and function description
>sp|Q8HXP1|SODM_CEBAP Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2 Back     alignment and function description
>sp|Q8HXP0|SODM_CALJA Superoxide dismutase [Mn], mitochondrial OS=Callithrix jacchus GN=SOD2 PE=2 SV=2 Back     alignment and function description
>sp|Q8HXP3|SODM_MACFA Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3 Back     alignment and function description
>sp|P41982|SODM_RABIT Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Oryctolagus cuniculus GN=SOD2 PE=2 SV=1 Back     alignment and function description
>sp|Q8HXP7|SODM_PANTR Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
91088539215 PREDICTED: similar to Mn superoxide dism 0.977 0.990 0.6 3e-72
295849286218 superoxide dismutase 2, mitochondrial [A 0.977 0.977 0.600 4e-71
350399495218 PREDICTED: superoxide dismutase [Mn] 1, 0.977 0.977 0.587 7e-71
33089106218 Mn superoxide dismutase [Apis mellifera 0.894 0.894 0.651 2e-70
380016603218 PREDICTED: superoxide dismutase [Mn] 1, 0.977 0.977 0.605 7e-70
17506561221 Protein SOD-2 [Caenorhabditis elegans] g 0.986 0.972 0.592 1e-69
308505922221 CRE-SOD-2 protein [Caenorhabditis remane 0.986 0.972 0.588 2e-69
350534940222 uncharacterized protein LOC100164663 [Ac 0.880 0.864 0.593 2e-69
196000370224 hypothetical protein TRIADDRAFT_21084 [T 0.986 0.959 0.599 4e-69
112983802216 Mn superoxide dismutase [Bombyx mori] gi 0.880 0.888 0.645 1e-68
>gi|91088539|ref|XP_972440.1| PREDICTED: similar to Mn superoxide dismutase [Tribolium castaneum] gi|270012743|gb|EFA09191.1| hypothetical protein TcasGA2_TC005780 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  276 bits (707), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/215 (60%), Positives = 165/215 (76%), Gaps = 2/215 (0%)

Query: 6   LLATRKIVTSPIL--QGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALE 63
           + A R++ T+P+   +    LP+L Y Y+ LEPVI+ +IM LHHSKHHQTYVTN NAA E
Sbjct: 1   MFALRRLATAPLAGSRAAHSLPELPYAYEALEPVISRDIMCLHHSKHHQTYVTNLNAAEE 60

Query: 64  KLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSL 123
           KLKAA++  D S  + L PAL+FNGGGH+NH++FW+ L+    +PSD L  AI+ SFG +
Sbjct: 61  KLKAALSKGDISTAISLEPALRFNGGGHLNHSIFWQNLSPESTQPSDALKKAIEDSFGGV 120

Query: 124 DKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHA 183
            +LKD+L+A+S+G+QGSGWGWLGY  KS  LKIAT ANQDPL  TTGL PL GIDVWEHA
Sbjct: 121 QQLKDQLSASSIGVQGSGWGWLGYCSKSGKLKIATCANQDPLQATTGLVPLLGIDVWEHA 180

Query: 184 YYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS 218
           YYLQYKNVR +YVKAI++I+NW  +++ + KAKS 
Sbjct: 181 YYLQYKNVRADYVKAIFEIVNWKDVSQRFEKAKSC 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|295849286|ref|NP_001171519.1| superoxide dismutase 2, mitochondrial [Apis mellifera] Back     alignment and taxonomy information
>gi|350399495|ref|XP_003485546.1| PREDICTED: superoxide dismutase [Mn] 1, mitochondrial-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|33089106|gb|AAP93582.1| Mn superoxide dismutase [Apis mellifera ligustica] Back     alignment and taxonomy information
>gi|380016603|ref|XP_003692268.1| PREDICTED: superoxide dismutase [Mn] 1, mitochondrial-like [Apis florea] Back     alignment and taxonomy information
>gi|17506561|ref|NP_492290.1| Protein SOD-2 [Caenorhabditis elegans] gi|401110|sp|P31161.1|SODM1_CAEEL RecName: Full=Superoxide dismutase [Mn] 1, mitochondrial; Flags: Precursor gi|217298|dbj|BAA02363.1| manganese superoxide dismutase precursor [Caenorhabditis elegans] gi|1408318|dbj|BAA12821.1| manganese superoxide dismutase [Caenorhabditis elegans] gi|3875775|emb|CAB02913.1| Protein SOD-2 [Caenorhabditis elegans] Back     alignment and taxonomy information
>gi|308505922|ref|XP_003115144.1| CRE-SOD-2 protein [Caenorhabditis remanei] gi|308259326|gb|EFP03279.1| CRE-SOD-2 protein [Caenorhabditis remanei] Back     alignment and taxonomy information
>gi|350534940|ref|NP_001232977.1| uncharacterized protein LOC100164663 [Acyrthosiphon pisum] gi|239788190|dbj|BAH70786.1| ACYPI005655 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|196000370|ref|XP_002110053.1| hypothetical protein TRIADDRAFT_21084 [Trichoplax adhaerens] gi|190588177|gb|EDV28219.1| hypothetical protein TRIADDRAFT_21084 [Trichoplax adhaerens] Back     alignment and taxonomy information
>gi|112983802|ref|NP_001037299.1| Mn superoxide dismutase [Bombyx mori] gi|52421187|dbj|BAD51413.1| Mn superoxide dismutase [Bombyx mori] gi|58429979|gb|AAW78358.1| Mn superoxide dismutase [Bombyx mori] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
WB|WBGene00004931221 sod-2 [Caenorhabditis elegans 0.986 0.972 0.592 2.4e-67
FB|FBgn0010213217 Sod2 "Superoxide dismutase 2 ( 0.967 0.972 0.572 4.7e-64
UNIPROTKB|Q8HXP0198 SOD2 "Superoxide dismutase [Mn 0.885 0.974 0.608 2.3e-62
UNIPROTKB|Q8HXP1198 SOD2 "Superoxide dismutase [Mn 0.885 0.974 0.608 2.3e-62
UNIPROTKB|P04179222 SOD2 "Superoxide dismutase [Mn 0.885 0.869 0.603 3e-62
UNIPROTKB|Q8HXP6222 SOD2 "Superoxide dismutase [Mn 0.885 0.869 0.603 3e-62
UNIPROTKB|Q8HXP7198 SOD2 "Superoxide dismutase [Mn 0.885 0.974 0.603 3e-62
UNIPROTKB|P41982202 SOD2 "Superoxide dismutase [Mn 0.885 0.955 0.608 6.2e-62
UNIPROTKB|Q8HXP2198 SOD2 "Superoxide dismutase [Mn 0.885 0.974 0.597 6.2e-62
UNIPROTKB|Q8HXP3222 SOD2 "Superoxide dismutase [Mn 0.885 0.869 0.597 6.2e-62
WB|WBGene00004931 sod-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 131/221 (59%), Positives = 160/221 (72%)

Query:     1 MLRQTLLATRKIVTSPI-----LQGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYV 55
             ML+ T+    K+V  PI     ++    LP L Y Y DLEPVI+ EIM+LHH KHH TYV
Sbjct:     1 MLQNTVRCVSKLV-QPITGVAAVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYV 59

Query:    56 TNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKMLNKNGGKPSDDLSNA 115
              N N   EKL  AV+  +    + L PALKFNGGGHINH++FW  L K+GG+PS +L  A
Sbjct:    60 NNLNQIEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTA 119

Query:   116 IKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLF 175
             IK+ FGSLD L+ +L+A++V +QGSGWGWLGY PK K LK+AT ANQDPL  TTGL PLF
Sbjct:   120 IKSDFGSLDNLQKQLSASTVAVQGSGWGWLGYCPKGKILKVATCANQDPLEATTGLVPLF 179

Query:   176 GIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAK 216
             GIDVWEHAYYLQYKNVRP+YV AI+ I NW  ++E +AKA+
Sbjct:   180 GIDVWEHAYYLQYKNVRPDYVNAIWKIANWKNVSERFAKAQ 220
GO:0004784 "superoxide dismutase activity" evidence=IEA
GO:0006801 "superoxide metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008340 "determination of adult lifespan" evidence=IMP
GO:0005739 "mitochondrion" evidence=IDA
FB|FBgn0010213 Sod2 "Superoxide dismutase 2 (Mn)" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP0 SOD2 "Superoxide dismutase [Mn], mitochondrial" [Callithrix jacchus (taxid:9483)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP1 SOD2 "Superoxide dismutase [Mn], mitochondrial" [Cebus apella (taxid:9515)] Back     alignment and assigned GO terms
UNIPROTKB|P04179 SOD2 "Superoxide dismutase [Mn], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP6 SOD2 "Superoxide dismutase [Mn], mitochondrial" [Pongo pygmaeus (taxid:9600)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP7 SOD2 "Superoxide dismutase [Mn], mitochondrial" [Pan troglodytes (taxid:9598)] Back     alignment and assigned GO terms
UNIPROTKB|P41982 SOD2 "Superoxide dismutase [Mn], mitochondrial" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP2 SOD2 "Superoxide dismutase [Mn], mitochondrial" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP3 SOD2 "Superoxide dismutase [Mn], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P41980SODM4_MAIZE1, ., 1, 5, ., 1, ., 10.56120.87610.8197N/AN/A
P41981SODM_ONCVO1, ., 1, 5, ., 1, ., 10.54870.88530.8654N/AN/A
P41982SODM_RABIT1, ., 1, 5, ., 1, ., 10.60820.88530.9554yesN/A
Q9PKA0SODM_CHLMU1, ., 1, 5, ., 1, ., 10.53060.88070.9365yesN/A
Q9XS41SODM_HORSE1, ., 1, 5, ., 1, ., 10.54090.99080.9729yesN/A
Q92450SODM_ASPFU1, ., 1, 5, ., 1, ., 10.52940.82110.8523noN/A
Q43008SODM_ORYSJ1, ., 1, 5, ., 1, ., 10.54720.89900.8484yesN/A
P09233SODM1_MAIZE1, ., 1, 5, ., 1, ., 10.54590.87610.8127N/AN/A
P41977SODM2_CAEEL1, ., 1, 5, ., 1, ., 10.55400.97700.9770noN/A
P41976SODM_BOVIN1, ., 1, 5, ., 1, ., 10.53910.97700.9594yesN/A
O96347SODM_CHAFE1, ., 1, 5, ., 1, ., 10.55830.89900.875N/AN/A
P41978SODM2_MAIZE1, ., 1, 5, ., 1, ., 10.54870.87610.8232N/AN/A
Q9SM64SODM_PRUPE1, ., 1, 5, ., 1, ., 10.51320.97700.9342N/AN/A
Q9LYK8SODM2_ARATH1, ., 1, 5, ., 1, ., 10.51150.96330.8713noN/A
Q9UQX0SODM_SCHPO1, ., 1, 5, ., 1, ., 10.48140.94030.9403yesN/A
P04179SODM_HUMAN1, ., 1, 5, ., 1, ., 10.60300.88530.8693yesN/A
Q55BJ9SODM_DICDI1, ., 1, 5, ., 1, ., 10.54310.88070.8495yesN/A
Q8HXP3SODM_MACFA1, ., 1, 5, ., 1, ., 10.59790.88530.8693N/AN/A
P07895SODM_RAT1, ., 1, 5, ., 1, ., 10.54090.99080.9729yesN/A
P0A4J6SODM_STRPN1, ., 1, 5, ., 1, ., 10.50240.87610.9502yesN/A
P0A4J5SODM_STRAG1, ., 1, 5, ., 1, ., 10.51700.87610.9455yesN/A
P31161SODM1_CAEEL1, ., 1, 5, ., 1, ., 10.59270.98620.9728yesN/A
P27084SODM_PEA1, ., 1, 5, ., 1, ., 10.53260.85770.8025N/AN/A
O81235SODM1_ARATH1, ., 1, 5, ., 1, ., 10.54200.92660.8744yesN/A
P49114SODM_CAVPO1, ., 1, 5, ., 1, ., 10.55550.93110.9620yesN/A
P35017SODM_HEVBR1, ., 1, 5, ., 1, ., 10.56650.89900.8412N/AN/A
P0DF73SODM_STRPQ1, ., 1, 5, ., 1, ., 10.50.88070.9552yesN/A
P09671SODM_MOUSE1, ., 1, 5, ., 1, ., 10.59790.88530.8693yesN/A
Q8HXP5SODM_HYLLA1, ., 1, 5, ., 1, ., 10.59790.88530.9747N/AN/A
Q8HXP4SODM_MACFU1, ., 1, 5, ., 1, ., 10.59790.88530.9747N/AN/A
Q8HXP7SODM_PANTR1, ., 1, 5, ., 1, ., 10.60300.88530.9747yesN/A
Q8HXP6SODM_PONPY1, ., 1, 5, ., 1, ., 10.60300.88530.8693N/AN/A
Q8HXP1SODM_CEBAP1, ., 1, 5, ., 1, ., 10.60820.88530.9747N/AN/A
Q8HXP0SODM_CALJA1, ., 1, 5, ., 1, ., 10.60820.88530.9747yesN/A
Q00637SODM_DROME1, ., 1, 5, ., 1, ., 10.57270.96780.9723yesN/A
Q8HXP2SODM_MACMU1, ., 1, 5, ., 1, ., 10.59790.88530.9747yesN/A
Q9Z9C4SODM_CHLPN1, ., 1, 5, ., 1, ., 10.50990.90820.9565yesN/A
P0A4J7SODM_STRR61, ., 1, 5, ., 1, ., 10.50240.87610.9502yesN/A
P42821SODM_CORDI1, ., 1, 5, ., 1, ., 10.50.87610.9597yesN/A
Q5FB30SODM_MACNE1, ., 1, 5, ., 1, ., 10.59790.88530.8693N/AN/A
O84296SODM_CHLTR1, ., 1, 5, ., 1, ., 10.51280.87610.9271yesN/A
P41979SODM3_MAIZE1, ., 1, 5, ., 1, ., 10.53060.87610.8197N/AN/A
O49066SODM_CAPAN1, ., 1, 5, ., 1, ., 10.53530.88530.8464N/AN/A
P11796SODM_NICPL1, ., 1, 5, ., 1, ., 10.52440.98160.9385N/AN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.15.1.10.946
3rd Layer1.15.10.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
COG0605204 COG0605, SodA, Superoxide dismutase [Inorganic ion 1e-85
PLN02471231 PLN02471, PLN02471, superoxide dismutase [Mn] 6e-83
PRK10925206 PRK10925, PRK10925, superoxide dismutase; Provisio 7e-53
pfam02777106 pfam02777, Sod_Fe_C, Iron/manganese superoxide dis 8e-50
PRK10543193 PRK10543, PRK10543, superoxide dismutase; Provisio 2e-41
PTZ00078193 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Pro 1e-37
pfam0008182 pfam00081, Sod_Fe_N, Iron/manganese superoxide dis 2e-32
PLN02685299 PLN02685, PLN02685, iron superoxide dismutase 9e-29
PLN02184212 PLN02184, PLN02184, superoxide dismutase [Fe] 6e-27
PLN02622261 PLN02622, PLN02622, iron superoxide dismutase 7e-26
>gnl|CDD|223678 COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information 
 Score =  251 bits (644), Expect = 1e-85
 Identities = 102/203 (50%), Positives = 128/203 (63%), Gaps = 8/203 (3%)

Query: 21  PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIV-- 78
             ELP+L Y Y  LEP I++E MELHH KHHQTYV N NAALE L   + +     I+  
Sbjct: 3   AYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKK 62

Query: 79  --QLGPALKFNGGGHINHALFWKML--NKNGGKPSDDLSNAIKASFGSLDKLKDELTAAS 134
              L  AL  N GGH NH+LFW+ L     GGKP+ +L+ AI   FGS DK K+E TAA+
Sbjct: 63  LAGLPAALFNNAGGHWNHSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAA 122

Query: 135 VGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPN 194
             + GSGW WL YDP  K L+I +T NQD      G  PL G+DVWEHAYYL Y N RP+
Sbjct: 123 ASVFGSGWAWLVYDPDGK-LEIVSTYNQDTPL-MWGSVPLLGLDVWEHAYYLDYGNRRPD 180

Query: 195 YVKAIYDIMNWNYINELYAKAKS 217
           YV+A ++++NW+ + E +  AK 
Sbjct: 181 YVEAFWNVVNWDEVEERFEAAKK 203

Length = 204
>gnl|CDD|215262 PLN02471, PLN02471, superoxide dismutase [Mn] Back     alignment and domain information
>gnl|CDD|182843 PRK10925, PRK10925, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|202388 pfam02777, Sod_Fe_C, Iron/manganese superoxide dismutases, C-terminal domain Back     alignment and domain information
>gnl|CDD|182534 PRK10543, PRK10543, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|185432 PTZ00078, PTZ00078, Superoxide dismutase [Fe]; Provisional Back     alignment and domain information
>gnl|CDD|200985 pfam00081, Sod_Fe_N, Iron/manganese superoxide dismutases, alpha-hairpin domain Back     alignment and domain information
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase Back     alignment and domain information
>gnl|CDD|177838 PLN02184, PLN02184, superoxide dismutase [Fe] Back     alignment and domain information
>gnl|CDD|166263 PLN02622, PLN02622, iron superoxide dismutase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
COG0605204 SodA Superoxide dismutase [Inorganic ion transport 100.0
PRK10543193 superoxide dismutase; Provisional 100.0
PLN02184212 superoxide dismutase [Fe] 100.0
PRK10925206 superoxide dismutase; Provisional 100.0
PLN02471231 superoxide dismutase [Mn] 100.0
PTZ00078193 Superoxide dismutase [Fe]; Provisional 100.0
PLN02622261 iron superoxide dismutase 100.0
PLN02685299 iron superoxide dismutase 100.0
KOG0876|consensus234 100.0
PF02777106 Sod_Fe_C: Iron/manganese superoxide dismutases, C- 100.0
PF0008182 Sod_Fe_N: Iron/manganese superoxide dismutases, al 99.96
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-79  Score=517.47  Aligned_cols=197  Identities=52%  Similarity=0.929  Sum_probs=183.4

Q ss_pred             ccceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhc-C-c--cccccchhhhhH
Q psy16344         19 QGPIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQL-G-P--ALKFNGGGHINH   94 (218)
Q Consensus        19 ~~~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~-~-~--~~~~n~~~~~NH   94 (218)
                      ++.|+||+|||+|++|||+||++||++||+|||++||++||+++++++++++..++++++.. . .  .++||+|||+||
T Consensus         1 ~~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~nn~~gh~NH   80 (204)
T COG0605           1 RMAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEELEDLSLEEIIKKLAGLPAALFNNAGGHWNH   80 (204)
T ss_pred             CCCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHhcccHHHHhcchhhhhH
Confidence            47899999999999999999999999999999999999999999998655888888877642 2 2  379999999999


Q ss_pred             HHHHHhhcCC-C-CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCCCC
Q psy16344         95 ALFWKMLNKN-G-GKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGL  171 (218)
Q Consensus        95 ~~f~~~L~p~-~-~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~~~  171 (218)
                      +|||++|+|. + ++|+|+|+++|+++|||+|+||++|+++|.++|||||+|||+|+. ++|.|++|+||| |+  +.+.
T Consensus        81 ~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~~-~kL~i~~t~n~~~p~--~~~~  157 (204)
T COG0605          81 SLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDPD-GKLEIVSTYNQDTPL--MWGS  157 (204)
T ss_pred             HHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECCC-CcEEEEeccCCCCcc--cCCC
Confidence            9999999996 4 799999999999999999999999999999999999999999986 699999999999 99  7789


Q ss_pred             eeeeeeccCchhhHhhhcCChHHHHHHHhcCCChHHHHHHHHHHhcC
Q psy16344        172 KPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAKSS  218 (218)
Q Consensus       172 ~PLL~iDvWEHAYyldY~n~r~~Yi~~~w~~InW~~V~~r~~~a~~~  218 (218)
                      +|||||||||||||+||||+|++||++||++|||++|++||++|++.
T Consensus       158 ~PiL~lDvWEHAYYldY~N~R~~Yv~afwnvVNW~~V~~r~~~a~~~  204 (204)
T COG0605         158 VPLLGLDVWEHAYYLDYGNRRPDYVEAFWNVVNWDEVEERFEAAKKE  204 (204)
T ss_pred             CceEEecchHHHHHHHhccCcHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999998763

>PRK10543 superoxide dismutase; Provisional Back     alignment and domain information
>PLN02184 superoxide dismutase [Fe] Back     alignment and domain information
>PRK10925 superoxide dismutase; Provisional Back     alignment and domain information
>PLN02471 superoxide dismutase [Mn] Back     alignment and domain information
>PTZ00078 Superoxide dismutase [Fe]; Provisional Back     alignment and domain information
>PLN02622 iron superoxide dismutase Back     alignment and domain information
>PLN02685 iron superoxide dismutase Back     alignment and domain information
>KOG0876|consensus Back     alignment and domain information
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately Back     alignment and domain information
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
3dc6_A198 Crystal Structure Of A Manganese Superoxide Dismuta 5e-71
1n0j_A199 The Structure Of Human Mitochondrial Mn3+ Superoxid 2e-65
1msd_A198 Comparison Of The Crystal Structures Of Genetically 2e-65
1var_A198 Mitochondrial Manganese Superoxide Dismutase Varian 3e-65
1pl4_A198 Crystal Structure Of Human Mnsod Y166f Mutant Lengt 4e-65
1ap5_A198 Tyr34->phe Mutant Of Human Mitochondrial Manganese 4e-65
3c3t_A198 Role Of A Glutamate Bridge Spanning The Dimeric Int 5e-65
3dc5_A195 Crystal Structure Of A Manganese Superoxide Dismuta 5e-65
1zte_A198 Contribution To Structure And Catalysis Of Tyrosine 6e-65
3c3s_A198 Role Of A Glutamate Bridge Spanning The Dimeric Int 9e-65
1qnm_A198 Human Manganese Superoxide Dismutase Mutant Q143n L 9e-65
1em1_A198 X-Ray Crystal Structure For Human Manganese Superox 1e-64
1luw_A198 Catalytic And Structural Effects Of Amino-Acid Subs 1e-64
2adp_A198 Nitrated Human Manganese Superoxide Dismutase Lengt 1e-64
1zuq_A198 Contribution To Structure And Catalysis Of Tyrosine 1e-64
2gds_A198 Interrupting The Hydrogen Bonding Network At The Ac 1e-64
1zsp_A198 Contribution To Structure And Catalysis Of Tyrosine 1e-64
2p4k_A198 Contribution To Structure And Catalysis Of Tyrosine 2e-64
1n0n_A199 Catalytic And Structural Effects Of Amino-Acid Subs 3e-64
1pm9_A198 Crystal Structure Of Human Mnsod H30n, Y166f Mutant 3e-64
2qkc_A196 Structural And Kinetic Study Of The Differences Bet 3e-64
1szx_A198 Role Of Hydrogen Bonding In The Active Site Of Huma 3e-64
1ja8_A198 Kinetic Analysis Of Product Inhibition In Human Man 4e-64
2qka_A196 Structural And Kinetic Study Of The Differences Bet 5e-64
1xil_A198 Hydrogen Bonding In Human Manganese Superoxide Dism 1e-59
1xdc_A198 Hydrogen Bonding In Human Manganese Superoxide Dism 5e-59
1kkc_A221 Crystal Structure Of Aspergillus Fumigatus Mnsod Le 1e-49
3mds_A203 Maganese Superoxide Dismutase From Thermus Thermoph 3e-46
2rcv_A202 Crystal Structure Of The Bacillus Subtilis Superoxi 2e-44
1gn3_A207 H145q Mutant Of Mycobacterium Tuberculosis Iron-Sup 5e-44
1xuq_A212 Crystal Structure Of Soda-1 (Ba4499) From Bacillus 1e-43
1gn4_A207 H145e Mutant Of Mycobacterium Tuberculosis Iron-Sup 1e-43
1ids_A207 X-Ray Structure Analysis Of The Iron-Dependent Supe 2e-43
1ar4_A201 X-Ray Structure Analysis Of The Cambialistic Supero 4e-43
1gn2_A207 S123c Mutant Of The Iron-Superoxide Dismutase From 5e-43
1gn6_A207 G152a Mutant Of Mycobacterium Tuberculosis Iron-Sup 1e-42
1jr9_A202 Crystal Structure Of Manganese Superoxide Dismutase 1e-42
3qvn_A206 Crystal Structure Of Cytosolic Mnsod3 From Candida 4e-41
1gv3_A248 The 2.0 Angstrom Resolution Structure Of The Cataly 6e-41
1xre_A217 Crystal Structure Of Soda-2 (Ba5696) From Bacillus 1e-40
1y67_A229 Crystal Structure Of Manganese Superoxide Dismutase 4e-40
2cdy_A231 Manganese Superoxide Dismutase (Mn-Sod) From Deinoc 5e-40
3kky_A211 Structure Of Manganese Superoxide Dismutase From De 6e-40
1vew_A205 Manganese Superoxide Dismutase From Escherichia Col 1e-38
1en5_A205 Crystal Structure Analysis Of The E. Coli Manganese 2e-38
1i0h_A205 Crystal Structure Of The E. Coli Manganese Superoxi 2e-38
1en4_A205 Crystal Structure Analysis Of The E. Coli Manganese 5e-38
1en6_A205 Crystal Structure Analysis Of The E. Coli Manganese 1e-37
1dt0_A197 Cloning, Sequence, And Crystallographic Structure O 1e-37
1i08_A205 Crystal Structure Analysis Of The H30a Mutant Of Ma 1e-37
3h1s_A195 Crystal Structure Of Superoxide Dismutase From Fran 8e-37
4f2n_A230 Crystal Structure Of Iron Superoxide Dismutase From 1e-36
3sdp_A195 The 2.1 Angstroms Resolution Structure Of Iron Supe 6e-36
3ak1_A214 Superoxide Dismutase From Aeropyrum Pernix K1, Apo- 9e-36
4h3e_A241 Crystal Structure Of A Putative Iron Superoxide Dis 7e-35
1ma1_A205 Structure And Properties Of The Atypical Iron Super 1e-34
3rn4_A215 Crystal Structure Of Iron-Substituted Sod2 From Sac 2e-34
3esf_A197 Crystal Structure Of The Enzyme Fe-Superoxide Dismu 2e-34
3tjt_A208 Crystal Structure Analysis Of The Superoxide Dismut 2e-34
3bfr_A215 The Crystal Structure Of Sod2 From Saccharomyces Ce 3e-34
1za5_A192 Q69h-Fesod Length = 192 3e-33
2cw2_A226 Crystal Structure Of Superoxide Dismutase From P. M 3e-33
3evk_A222 Crystal Structure Of The Metal-Bound Superoxide Dis 1e-32
3lsu_A207 Crystal Structure Of Sod2 From Saccharomyces Cerevi 1e-32
2a03_A206 Superoxide Dismutase Protein From Plasmodium Berghe 1e-32
1isa_A192 Structure-Function In E. Coli Iron Superoxide Dismu 2e-32
3lio_A192 X-Ray Structure Of The Iron Superoxide Dismutase Fr 2e-32
2nyb_A192 Crystal Structure Of E.Coli Iron Superoxide Dismuta 2e-32
4e4e_A207 Crystal Structure Of The Y34f Mutant Of Saccharomyc 2e-32
4ffk_A223 X-Ray Structure Of Iron Superoxide Dismutase From A 3e-32
2awp_A198 Crystal Structure Of Plasmodium Knowlesi Structure 1e-31
2gpc_A194 The Crystal Structure Of The Enzyme Fe-Superoxide D 1e-31
3tqj_A210 Structure Of The Superoxide Dismutase (Fe) (Sodb) F 4e-31
2goj_A197 The Crystal Structure Of The Enzyme Fe-Superoxide D 2e-30
2bpi_A206 Stucture Of Iron Dependent Superoxide Dismutase Fro 2e-30
1qnn_A191 Cambialistic Superoxide Dismutase From Porphyromona 3e-30
3js4_A227 Crystal Structure Of Iron Superoxide Dismutase From 5e-30
2w7w_A194 The Crystal Structure Of Iron Superoxide Dismutase 2e-29
1ues_A191 Crystal Structure Of Porphyromonas Gingivalis Sod L 2e-29
3cei_A213 Crystal Structure Of Superoxide Dismutase From Heli 3e-28
2cw3_A280 X-Ray Structure Of Pmsod2, Superoxide Dismutase Fro 8e-26
1p7g_A222 Crystal Structure Of Superoxide Dismutase From Pyro 5e-25
1wb8_A210 Iron Superoxide Dismutase (Fe-Sod) From The Hyperth 5e-25
1coj_A212 Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic 1e-24
1wb7_A210 Iron Superoxide Dismutase (Fe-Sod) From The Hyperth 1e-24
1my6_A199 The 1.6 A Structure Of Fe-superoxide Dismutase From 1e-24
1b06_A210 Superoxide Dismutase From Sulfolobus Acidocaldarius 2e-23
1unf_X238 The Crystal Structure Of The Eukaryotic Fesod From 3e-22
>pdb|3DC6|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases From Caenorhabditis Elegans Length = 198 Back     alignment and structure 
Iteration: 1

 Score =  263 bits (672), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 124/193 (64%), Positives = 148/193 (76%)
Query: 24  LPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPA 83
           LP L Y Y DLEPVI+ EIM+LHH KHH TYV N N   EKL  AV+  +    + L PA
Sbjct: 5   LPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNVKEAIALQPA 64
Query: 84  LKFNGGGHINHALFWKMLNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWG 143
           LKFNGGGHINH++FW  L K+GG+PS +L  AIK+ FGSLD L+ +L+A++V +QGSGWG
Sbjct: 65  LKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIKSDFGSLDNLQKQLSASTVAVQGSGWG 124
Query: 144 WLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIM 203
           WLGY PK K LK+AT ANQDPL  TTGL PLFGIDVWEHAYYLQYKNVRP+YV AI+ I 
Sbjct: 125 WLGYCPKGKILKVATCANQDPLEATTGLVPLFGIDVWEHAYYLQYKNVRPDYVNAIWKIA 184
Query: 204 NWNYINELYAKAK 216
           NW  ++E +AKA+
Sbjct: 185 NWKNVSERFAKAQ 197
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide Dismutase Reveals A Novel Tetrameric Interface Of Two 4-Helix Bundles Length = 199 Back     alignment and structure
>pdb|1MSD|A Chain A, Comparison Of The Crystal Structures Of Genetically Engineered Human Manganese Superoxide Dismutase And Manganese Superoxide Dismutase From Thermus Thermophilus. Differences In Dimer-Dimer Interactions. Length = 198 Back     alignment and structure
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With Ile 58 Replaced By Thr Length = 198 Back     alignment and structure
>pdb|1PL4|A Chain A, Crystal Structure Of Human Mnsod Y166f Mutant Length = 198 Back     alignment and structure
>pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|3C3T|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|3DC5|A Chain A, Crystal Structure Of A Manganese Superoxide Dismutases From Caenorhabditis Elegans Length = 195 Back     alignment and structure
>pdb|1ZTE|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Suerpoxide Dismutase Length = 198 Back     alignment and structure
>pdb|3C3S|A Chain A, Role Of A Glutamate Bridge Spanning The Dimeric Interface Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n Length = 198 Back     alignment and structure
>pdb|1EM1|A Chain A, X-Ray Crystal Structure For Human Manganese Superoxide Dismutase, Q143a Length = 198 Back     alignment and structure
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid Substitution At His 30 In Human Manganese Superoxide Dismutase: Insertion Of Val Cgamma Into The Substrate Access Channel Length = 198 Back     alignment and structure
>pdb|2ADP|A Chain A, Nitrated Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1ZUQ|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|2GDS|A Chain A, Interrupting The Hydrogen Bonding Network At The Active Site Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1ZSP|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|2P4K|A Chain A, Contribution To Structure And Catalysis Of Tyrosine 34 In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid Substitution At His30 In Human Manganese Superoxide Dismutase Length = 199 Back     alignment and structure
>pdb|1PM9|A Chain A, Crystal Structure Of Human Mnsod H30n, Y166f Mutant Length = 198 Back     alignment and structure
>pdb|2QKC|A Chain A, Structural And Kinetic Study Of The Differences Between Human And E.Coli Manganese Superoxide Dismutases Length = 196 Back     alignment and structure
>pdb|1SZX|A Chain A, Role Of Hydrogen Bonding In The Active Site Of Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|1JA8|A Chain A, Kinetic Analysis Of Product Inhibition In Human Manganese Superoxide Dismutase Length = 198 Back     alignment and structure
>pdb|2QKA|A Chain A, Structural And Kinetic Study Of The Differences Between Human And E.Coli Manganese Superoxide Dismutases Length = 196 Back     alignment and structure
>pdb|1XIL|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase Containing 3- Fluorotyrosine Length = 198 Back     alignment and structure
>pdb|1XDC|A Chain A, Hydrogen Bonding In Human Manganese Superoxide Dismutase Containing 3- Fluorotyrosine Length = 198 Back     alignment and structure
>pdb|1KKC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Mnsod Length = 221 Back     alignment and structure
>pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus Length = 203 Back     alignment and structure
>pdb|2RCV|A Chain A, Crystal Structure Of The Bacillus Subtilis Superoxide Dismutase Length = 202 Back     alignment and structure
>pdb|1GN3|A Chain A, H145q Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|1XUQ|A Chain A, Crystal Structure Of Soda-1 (Ba4499) From Bacillus Anthracis At 1.8a Resolution. Length = 212 Back     alignment and structure
>pdb|1GN4|A Chain A, H145e Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|1IDS|A Chain A, X-Ray Structure Analysis Of The Iron-Dependent Superoxide Dismutase From Mycobacterium Tuberculosis At 2.0 Angstroms Resolutions Reveals Novel Dimer-Dimer Interactions Length = 207 Back     alignment and structure
>pdb|1AR4|A Chain A, X-Ray Structure Analysis Of The Cambialistic Superoxide Dismutase From Propionibacterium Shermanii Active With Fe Or Mn Length = 201 Back     alignment and structure
>pdb|1GN2|A Chain A, S123c Mutant Of The Iron-Superoxide Dismutase From Mycobacterium Tuberculosis. Length = 207 Back     alignment and structure
>pdb|1GN6|A Chain A, G152a Mutant Of Mycobacterium Tuberculosis Iron-Superoxide Dismutase. Length = 207 Back     alignment and structure
>pdb|1JR9|A Chain A, Crystal Structure Of Manganese Superoxide Dismutases From Bacillus Halodenitrificans Length = 202 Back     alignment and structure
>pdb|3QVN|A Chain A, Crystal Structure Of Cytosolic Mnsod3 From Candida Albicans Length = 206 Back     alignment and structure
>pdb|1GV3|A Chain A, The 2.0 Angstrom Resolution Structure Of The Catalytic Portion Of A Cyanobacterial Membrane-Bound Manganese Superoxide Dismutase Length = 248 Back     alignment and structure
>pdb|1XRE|A Chain A, Crystal Structure Of Soda-2 (Ba5696) From Bacillus Anthracis At 1.8a Resolution. Length = 217 Back     alignment and structure
>pdb|1Y67|A Chain A, Crystal Structure Of Manganese Superoxide Dismutase From Deinococcus Radiodurans Length = 229 Back     alignment and structure
>pdb|2CDY|A Chain A, Manganese Superoxide Dismutase (Mn-Sod) From Deinococcus Radiodurans Length = 231 Back     alignment and structure
>pdb|3KKY|A Chain A, Structure Of Manganese Superoxide Dismutase From Deinococcus Radiodurans In The Orthorhombic Space Group P212121: A Case Study Of Mistaken Identity Length = 211 Back     alignment and structure
>pdb|1VEW|A Chain A, Manganese Superoxide Dismutase From Escherichia Coli Length = 205 Back     alignment and structure
>pdb|1EN5|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Y34f Mutant Length = 205 Back     alignment and structure
>pdb|1I0H|A Chain A, Crystal Structure Of The E. Coli Manganese Superoxide Dismutase Mutant Y174f At 1.35 Angstroms Resolution. Length = 205 Back     alignment and structure
>pdb|1EN4|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Q146h Mutant Length = 205 Back     alignment and structure
>pdb|1EN6|A Chain A, Crystal Structure Analysis Of The E. Coli Manganese Superoxide Dismutase Q146l Mutant Length = 205 Back     alignment and structure
>pdb|1DT0|A Chain A, Cloning, Sequence, And Crystallographic Structure Of Recombinant Iron Superoxide Dismutase From Pseudomonas Ovalis Length = 197 Back     alignment and structure
>pdb|1I08|A Chain A, Crystal Structure Analysis Of The H30a Mutant Of Manganese Superoxide Dismutase From E. Coli Length = 205 Back     alignment and structure
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 195 Back     alignment and structure
>pdb|4F2N|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From Leishmania Major Length = 230 Back     alignment and structure
>pdb|3SDP|A Chain A, The 2.1 Angstroms Resolution Structure Of Iron Superoxide Dismutase From Pseudomonas Ovalis Length = 195 Back     alignment and structure
>pdb|3AK1|A Chain A, Superoxide Dismutase From Aeropyrum Pernix K1, Apo-Form Length = 214 Back     alignment and structure
>pdb|4H3E|A Chain A, Crystal Structure Of A Putative Iron Superoxide Dismutase From Trypanosoma Cruzi Bound To Iron Length = 241 Back     alignment and structure
>pdb|1MA1|A Chain A, Structure And Properties Of The Atypical Iron Superoxide Dismutase From Methanobacterium Thermoautotrophicum Length = 205 Back     alignment and structure
>pdb|3RN4|A Chain A, Crystal Structure Of Iron-Substituted Sod2 From Saccharomyces Cerevisiae Length = 215 Back     alignment and structure
>pdb|3ESF|A Chain A, Crystal Structure Of The Enzyme Fe-Superoxide Dismutase Tbsodb2 From Trypanosoma Brucei Length = 197 Back     alignment and structure
>pdb|3TJT|A Chain A, Crystal Structure Analysis Of The Superoxide Dismutase From Clostridium Difficile Length = 208 Back     alignment and structure
>pdb|3BFR|A Chain A, The Crystal Structure Of Sod2 From Saccharomyces Cerevisiae Length = 215 Back     alignment and structure
>pdb|1ZA5|A Chain A, Q69h-Fesod Length = 192 Back     alignment and structure
>pdb|2CW2|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Marinus Length = 226 Back     alignment and structure
>pdb|3EVK|A Chain A, Crystal Structure Of The Metal-Bound Superoxide Dismutase From Pyrobaculum Aerophilum Length = 222 Back     alignment and structure
>pdb|3LSU|A Chain A, Crystal Structure Of Sod2 From Saccharomyces Cerevisiae Length = 207 Back     alignment and structure
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei Length = 206 Back     alignment and structure
>pdb|1ISA|A Chain A, Structure-Function In E. Coli Iron Superoxide Dismutase: Comparisons With The Manganese Enzyme From T. Thermophilus Length = 192 Back     alignment and structure
>pdb|3LIO|A Chain A, X-Ray Structure Of The Iron Superoxide Dismutase From Pseudoalteromonas Haloplanktis (Crystal Form I) Length = 192 Back     alignment and structure
>pdb|2NYB|A Chain A, Crystal Structure Of E.Coli Iron Superoxide Dismutase Q69e At 1.1 Angstrom Resolution Length = 192 Back     alignment and structure
>pdb|4E4E|A Chain A, Crystal Structure Of The Y34f Mutant Of Saccharomyces Cerevisiae Manganese Superoxide Dismutase Length = 207 Back     alignment and structure
>pdb|4FFK|A Chain A, X-Ray Structure Of Iron Superoxide Dismutase From Acidilobus Saccharovorans Length = 223 Back     alignment and structure
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron Super-Oxide Dismutase Length = 198 Back     alignment and structure
>pdb|2GPC|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide Dismutase From Trypanosoma Cruzi Length = 194 Back     alignment and structure
>pdb|3TQJ|A Chain A, Structure Of The Superoxide Dismutase (Fe) (Sodb) From Coxiella Burnetii Length = 210 Back     alignment and structure
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide Dismutase From Plasmodium Falciparum Length = 197 Back     alignment and structure
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P. Falciparum. Length = 206 Back     alignment and structure
>pdb|1QNN|A Chain A, Cambialistic Superoxide Dismutase From Porphyromonas Gingivalis Length = 191 Back     alignment and structure
>pdb|3JS4|A Chain A, Crystal Structure Of Iron Superoxide Dismutase From Anaplasma Phagocytophilum Length = 227 Back     alignment and structure
>pdb|2W7W|A Chain A, The Crystal Structure Of Iron Superoxide Dismutase From Aliivibrio Salmonicida. Length = 194 Back     alignment and structure
>pdb|1UES|A Chain A, Crystal Structure Of Porphyromonas Gingivalis Sod Length = 191 Back     alignment and structure
>pdb|3CEI|A Chain A, Crystal Structure Of Superoxide Dismutase From Helicobacter Pylori Length = 213 Back     alignment and structure
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From Perkinsus Marinus Length = 280 Back     alignment and structure
>pdb|1P7G|A Chain A, Crystal Structure Of Superoxide Dismutase From Pyrobaculum Aerophilum Length = 222 Back     alignment and structure
>pdb|1WB8|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The Hyperthermophile Sulfolobus Solfataricus. 2.3 A Resolution Structure Of Recombinant Protein With A Covalently Modified Tyrosin In The Active Site. Length = 210 Back     alignment and structure
>pdb|1COJ|A Chain A, Fe-Sod From Aquifex Pyrophilus, A Hyperthermophilic Bacterium Length = 212 Back     alignment and structure
>pdb|1WB7|A Chain A, Iron Superoxide Dismutase (Fe-Sod) From The Hyperthermophile Sulfolobus Solfataricus. Crystal Structure Of The Y41f Mutant. Length = 210 Back     alignment and structure
>pdb|1MY6|A Chain A, The 1.6 A Structure Of Fe-superoxide Dismutase From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus : Correlation Of Epr And Structural Characteristics Length = 199 Back     alignment and structure
>pdb|1B06|A Chain A, Superoxide Dismutase From Sulfolobus Acidocaldarius Length = 210 Back     alignment and structure
>pdb|1UNF|X Chain X, The Crystal Structure Of The Eukaryotic Fesod From Vigna Unguiculata Suggests A New Enzymatic Mechanism Length = 238 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
1pl4_A198 Superoxide dismutase [MN], mitochondrial; oxidored 1e-118
3dc5_A195 Superoxide dismutase [MN] 2; alpha hairpin N domai 1e-117
1bsm_A201 Superoxide dismutase; oxidoreductase; 1.35A {Propi 1e-115
1ids_A207 Iron superoxide dismutase; 2.00A {Mycobacterium tu 1e-114
1kkc_A221 Mnsod, manganese superoxide dismutase; homotetrame 1e-114
3ak2_A214 Superoxide dismutase [MN/FE]; cambialistic, oxidor 1e-113
1ma1_A205 Superoxide dismutase; metal specificity, azide inh 1e-112
4ffk_A223 Superoxide dismutase; oxidoreductase, superoxide a 1e-111
3rn4_A215 Superoxide dismutase [MN], mitochondrial; mitochon 1e-110
1b06_A210 Protein (superoxide dismutase); oxidoreductase; 2. 1e-110
3qvn_A206 Manganese-containing superoxide dismutase; Mn supe 1e-109
1mng_A203 Manganese superoxide dismutase; oxidoreductase(sup 1e-107
1coj_A212 Protein (superoxide dismutase); oxidoreductase; 1. 1e-103
1ix9_A205 Mnsod, superoxide dismutase; manganese superoxide 1e-102
1xre_A217 SODA-2, superoxide dismutase; spine, oxidoreductas 1e-101
1gv3_A248 Manganese superoxide dismutase; anabaena PCC 7120, 1e-101
2rcv_A202 Superoxide dismutase [MN]; bacillus subtilis,super 3e-97
2cw3_A280 Pmsod2, iron superoxide dismutase; oxidoreductase; 3e-96
3kky_A211 Mnsod, superoxide dismutase [MN]; manganese, ME bi 6e-96
4f2n_A230 Superoxide dismutase; ssgcid, NIH, niaid, SBRI, em 3e-94
2gpc_A194 Iron superoxide dismutase; alpha+beta structure, o 2e-91
2cw2_A226 Superoxide dismutase 1; SOD, oxidoreductase; 1.86A 5e-91
3cei_A213 Superoxide dismutase; oxidoreductase; 2.40A {Helic 2e-90
1dt0_A197 Superoxide dismutase; pseudomonas ovalis, oxidored 7e-88
2awp_A198 Iron super-oxide dismutase; structural genomics, s 8e-88
3js4_A227 Superoxide dismutase; niaid, ssgcid, seattle struc 5e-86
1uer_A191 SOD, superoxide dismutase; metal-specific, cambial 1e-85
3h1s_A195 Superoxide dismutase; SOBD, csgid, oxidoreductase, 4e-84
3lio_A192 Iron superoxide dismutase; cold adaptation, flexib 6e-84
3tqj_A210 Superoxide dismutase [FE]; oxidoreductase; 2.00A { 8e-84
2nyb_A192 Superoxide dismutase [FE]; iron superoxide dismuta 9e-83
1my6_A199 Iron (III) superoxide dismutase; iron speroxide di 2e-77
1unf_X238 Iron superoxide dismutase; oxidoreductase, eukaryo 2e-77
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ... Length = 198 Back     alignment and structure
 Score =  332 bits (854), Expect = e-118
 Identities = 116/195 (59%), Positives = 143/195 (73%), Gaps = 1/195 (0%)

Query: 23  ELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGP 82
            LP L Y Y  LEP IN++IM+LHHSKHH  YV N N   EK + A+A  D +A + L P
Sbjct: 3   SLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQP 62

Query: 83  ALKFNGGGHINHALFWKMLNKNGG-KPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSG 141
           ALKFNGGGHINH++FW  L+ NGG +P  +L  AIK  FGS DK K++LTAASVG+QGSG
Sbjct: 63  ALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSG 122

Query: 142 WGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYD 201
           WGWLG++ +   L+IA   NQDPL  TTGL PL GIDVWEHAY+LQYKNVRP+Y+KAI++
Sbjct: 123 WGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLLGIDVWEHAYFLQYKNVRPDYLKAIWN 182

Query: 202 IMNWNYINELYAKAK 216
           ++NW  + E Y   K
Sbjct: 183 VINWENVTERYMACK 197
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A Length = 195 Back     alignment and structure
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium freudenreichii subspshermanii} SCOP: a.2.11.1 d.44.1.1 PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A Length = 201 Back     alignment and structure
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A Length = 207 Back     alignment and structure
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer, oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP: a.2.11.1 d.44.1.1 Length = 221 Back     alignment and structure
>3ak2_A Superoxide dismutase [MN/FE]; cambialistic, oxidoreductase; 1.35A {Aeropyrum pernix} PDB: 3ak1_A 3ak3_A 1p7g_A 3evk_A Length = 214 Back     alignment and structure
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide inactivation, oxidoreductase; 2.60A {Methanothermobacterthermautotrophicus} SCOP: a.2.11.1 d.44.1.1 Length = 205 Back     alignment and structure
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A {Acidilobus saccharovorans} Length = 223 Back     alignment and structure
>3rn4_A Superoxide dismutase [MN], mitochondrial; mitochondrial manganese superoxide dismutase, iron-binding, mitochondrion, oxidoreductase; 1.79A {Saccharomyces cerevisiae} PDB: 3bfr_A 3lsu_A* Length = 215 Back     alignment and structure
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A Length = 210 Back     alignment and structure
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase, oxidoreductase; 2.60A {Candida albicans} Length = 206 Back     alignment and structure
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A Length = 203 Back     alignment and structure
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} SCOP: a.2.11.1 d.44.1.1 Length = 212 Back     alignment and structure
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F mutant, hydrogen bond, reactivity, ultra-high resolution, oxidoreductase; 0.90A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A 1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A Length = 205 Back     alignment and structure
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} Length = 217 Back     alignment and structure
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena SP} SCOP: a.2.11.1 d.44.1.1 Length = 248 Back     alignment and structure
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A Length = 202 Back     alignment and structure
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus} Length = 280 Back     alignment and structure
>3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding, oxidoreductase, metal binding protein; 1.80A {Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A 2aw9_A Length = 211 Back     alignment and structure
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald biostructures, structural national institute of allergy and infectious diseases; 1.85A {Leishmania major} Length = 230 Back     alignment and structure
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A Length = 194 Back     alignment and structure
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} Length = 226 Back     alignment and structure
>3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori} Length = 213 Back     alignment and structure
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1 Length = 197 Back     alignment and structure
>2awp_A Iron super-oxide dismutase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.00A {Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A Length = 198 Back     alignment and structure
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum} Length = 227 Back     alignment and structure
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A Length = 191 Back     alignment and structure
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp} Length = 195 Back     alignment and structure
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A Length = 192 Back     alignment and structure
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii} Length = 210 Back     alignment and structure
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A Length = 192 Back     alignment and structure
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1 Length = 199 Back     alignment and structure
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic, metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1 d.44.1.1 Length = 238 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
3dc5_A195 Superoxide dismutase [MN] 2; alpha hairpin N domai 100.0
1pl4_A198 Superoxide dismutase [MN], mitochondrial; oxidored 100.0
1ids_A207 Iron superoxide dismutase; 2.00A {Mycobacterium tu 100.0
1bsm_A201 Superoxide dismutase; oxidoreductase; 1.35A {Propi 100.0
4ffk_A223 Superoxide dismutase; oxidoreductase, superoxide a 100.0
3qvn_A206 Manganese-containing superoxide dismutase; Mn supe 100.0
1ma1_A205 Superoxide dismutase; metal specificity, azide inh 100.0
1b06_A210 Protein (superoxide dismutase); oxidoreductase; 2. 100.0
3ak2_A214 Superoxide dismutase [MN/FE]; cambialistic, oxidor 100.0
3tjt_A208 Superoxide dismutase; metal ION binding, rossmann 100.0
3tqj_A210 Superoxide dismutase [FE]; oxidoreductase; 2.00A { 100.0
4h3e_A241 Fesod, superoxide dismutase; structural genomics, 100.0
1kkc_A221 Mnsod, manganese superoxide dismutase; homotetrame 100.0
3rn4_A215 Superoxide dismutase [MN], mitochondrial; mitochon 100.0
2awp_A198 Iron super-oxide dismutase; structural genomics, s 100.0
1gv3_A248 Manganese superoxide dismutase; anabaena PCC 7120, 100.0
3cei_A213 Superoxide dismutase; oxidoreductase; 2.40A {Helic 100.0
1mng_A203 Manganese superoxide dismutase; oxidoreductase(sup 100.0
3h1s_A195 Superoxide dismutase; SOBD, csgid, oxidoreductase, 100.0
1xre_A217 SODA-2, superoxide dismutase; spine, oxidoreductas 100.0
3kky_A211 Mnsod, superoxide dismutase [MN]; manganese, ME bi 100.0
1ix9_A205 Mnsod, superoxide dismutase; manganese superoxide 100.0
3lio_A192 Iron superoxide dismutase; cold adaptation, flexib 100.0
2nyb_A192 Superoxide dismutase [FE]; iron superoxide dismuta 100.0
2rcv_A202 Superoxide dismutase [MN]; bacillus subtilis,super 100.0
1uer_A191 SOD, superoxide dismutase; metal-specific, cambial 100.0
2cw2_A226 Superoxide dismutase 1; SOD, oxidoreductase; 1.86A 100.0
1my6_A199 Iron (III) superoxide dismutase; iron speroxide di 100.0
2gpc_A194 Iron superoxide dismutase; alpha+beta structure, o 100.0
1dt0_A197 Superoxide dismutase; pseudomonas ovalis, oxidored 100.0
4f2n_A230 Superoxide dismutase; ssgcid, NIH, niaid, SBRI, em 100.0
3js4_A227 Superoxide dismutase; niaid, ssgcid, seattle struc 100.0
1unf_X238 Iron superoxide dismutase; oxidoreductase, eukaryo 100.0
2cw3_A280 Pmsod2, iron superoxide dismutase; oxidoreductase; 100.0
1coj_A212 Protein (superoxide dismutase); oxidoreductase; 1. 100.0
>3dc5_A Superoxide dismutase [MN] 2; alpha hairpin N domain, alpha/beta C domain, oxidoreductase, manganese, metal-binding, mitochondrion; 1.70A {Caenorhabditis elegans} PDB: 3dc6_A Back     alignment and structure
Probab=100.00  E-value=3e-84  Score=543.45  Aligned_cols=193  Identities=61%  Similarity=1.084  Sum_probs=185.8

Q ss_pred             ceecCCCCCCCCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHhcCCHHHHHhcCccccccchhhhhHHHHHHh
Q psy16344         21 PIELPKLDYGYKDLEPVINSEIMELHHSKHHQTYVTNYNAALEKLKAAVANNDASAIVQLGPALKFNGGGHINHALFWKM  100 (218)
Q Consensus        21 ~~~lp~Lpy~~~~L~p~iS~~tl~~H~~khh~~Yv~~LN~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~~~~NH~~f~~~  100 (218)
                      .|+||+|||+|++|||+||++||++||+|||++||++||+++++++++.+..++++++.+++.++||+|||+||+|||+|
T Consensus         2 ~~~Lp~LpY~~~aLeP~is~~tm~~Hh~kHh~~YV~~LN~~~~~~~~~~~~~~~~~i~~~~~~~~~n~ggh~NH~~fw~~   81 (195)
T 3dc5_A            2 KHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSKGNLKEAIALQPALKFNGGGHINHSIFWTN   81 (195)
T ss_dssp             CCCCCCCSSCTTTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999876778889999998888899999999999999999


Q ss_pred             hcCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCCCCCCCCCCeeeeeeccC
Q psy16344        101 LNKNGGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDPLFETTGLKPLFGIDVW  180 (218)
Q Consensus       101 L~p~~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~p~~~~~~~~PLL~iDvW  180 (218)
                      |+|++++|++.|+++|+++|||||+||++|+++|.++|||||+|||+|+.+|+|.|++|+||||+  + +.+||||||||
T Consensus        82 l~P~gg~P~g~L~~aI~~~FGS~e~fk~~F~~aa~~~fGSGW~WLv~~~~~~~L~i~~t~n~dpl--~-g~~PlL~iDvW  158 (195)
T 3dc5_A           82 LAKDGGEPSKELMDTIKRDFGSLDNLQKRLSDITIAVQGSGWGWLGYCKKDKILKIATCANQDPL--E-GMVPLFGIDVW  158 (195)
T ss_dssp             BCSSCCCCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEEETTTTEEEEEEEETTCCC--C-SSEEEEEEECS
T ss_pred             cCCCCCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCcceEEEEEEECCCCeEEEEecCCCCCc--c-CCcceEEeech
Confidence            99988899999999999999999999999999999999999999999987899999999999998  4 88999999999


Q ss_pred             chhhHhhhcCChHHHHHHHhcCCChHHHHHHHHHHh
Q psy16344        181 EHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAK  216 (218)
Q Consensus       181 EHAYyldY~n~r~~Yi~~~w~~InW~~V~~r~~~a~  216 (218)
                      |||||+||||+|++||++||++|||++|++||.+|+
T Consensus       159 EHAYYldY~N~R~~Yi~~~w~~vNW~~v~~r~~~a~  194 (195)
T 3dc5_A          159 EHAYYLQYKNVRPDYVHAIWKIANWKNISERFANAR  194 (195)
T ss_dssp             GGGTHHHHTTCHHHHHHHHGGGBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence            999999999999999999999999999999999885
>1pl4_A Superoxide dismutase [MN], mitochondrial; oxidoreductase; 1.47A {Homo sapiens} SCOP: a.2.11.1 d.44.1.1 PDB: 1n0j_A 1luv_A 1msd_A 2adq_B 1pm9_A 3c3t_A 1ap6_A 1ap5_A 1var_A 3c3s_A 1em1_A 1qnm_A 1zte_A 1luw_A 2gds_A 1zuq_A 2adp_A* 1zsp_A 1n0n_A 2p4k_A ... Back     alignment and structure
>1ids_A Iron superoxide dismutase; 2.00A {Mycobacterium tuberculosis} SCOP: a.2.11.1 d.44.1.1 PDB: 1gn2_A 1gn3_A 1gn6_A 1gn4_A Back     alignment and structure
>1bsm_A Superoxide dismutase; oxidoreductase; 1.35A {Propionibacterium freudenreichii subspshermanii} SCOP: a.2.11.1 d.44.1.1 PDB: 1ar4_A 1ar5_A 1bs3_A 1avm_A 1bt8_A Back     alignment and structure
>4ffk_A Superoxide dismutase; oxidoreductase, superoxide acceptor; 1.76A {Acidilobus saccharovorans} Back     alignment and structure
>3qvn_A Manganese-containing superoxide dismutase; Mn superoxide dismutase, oxidoreductase; 2.60A {Candida albicans} Back     alignment and structure
>1ma1_A Superoxide dismutase; metal specificity, azide inhibition, peroxide inactivation, oxidoreductase; 2.60A {Methanothermobacterthermautotrophicus} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>1b06_A Protein (superoxide dismutase); oxidoreductase; 2.20A {Sulfolobus acidocaldarius} SCOP: a.2.11.1 d.44.1.1 PDB: 1wb8_A* 1wb7_A Back     alignment and structure
>3ak2_A Superoxide dismutase [MN/FE]; cambialistic, oxidoreductase; 1.35A {Aeropyrum pernix} PDB: 3ak1_A 3ak3_A 1p7g_A 3evk_A Back     alignment and structure
>3tjt_A Superoxide dismutase; metal ION binding, rossmann fold, oxidoreductase; 1.80A {Clostridium difficile} Back     alignment and structure
>3tqj_A Superoxide dismutase [FE]; oxidoreductase; 2.00A {Coxiella burnetii} Back     alignment and structure
>4h3e_A Fesod, superoxide dismutase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Trypanosoma cruzi} Back     alignment and structure
>1kkc_A Mnsod, manganese superoxide dismutase; homotetramer, oxidoreductase; 2.00A {Aspergillus fumigatus} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>3rn4_A Superoxide dismutase [MN], mitochondrial; mitochondrial manganese superoxide dismutase, iron-binding, mitochondrion, oxidoreductase; 1.79A {Saccharomyces cerevisiae} PDB: 3bfr_A 3lsu_A* 4e4e_A* Back     alignment and structure
>2awp_A Iron super-oxide dismutase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.00A {Plasmodium knowlesi} PDB: 2bpi_A 2a03_A 2goj_A Back     alignment and structure
>1gv3_A Manganese superoxide dismutase; anabaena PCC 7120,; 2.0A {Anabaena SP} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>3cei_A Superoxide dismutase; oxidoreductase; 2.40A {Helicobacter pylori} Back     alignment and structure
>1mng_A Manganese superoxide dismutase; oxidoreductase(superoxide acceptor); 1.80A {Thermus thermophilus} SCOP: a.2.11.1 d.44.1.1 PDB: 3mds_A Back     alignment and structure
>3h1s_A Superoxide dismutase; SOBD, csgid, oxidoreductase, structura genomics; 1.90A {Francisella tularensis subsp} Back     alignment and structure
>1xre_A SODA-2, superoxide dismutase; spine, oxidoreductase; 1.80A {Bacillus anthracis} Back     alignment and structure
>3kky_A Mnsod, superoxide dismutase [MN]; manganese, ME binding, oxidoreductase, metal binding protein; 1.80A {Deinococcus radiodurans} PDB: 2cdy_A 2ce4_A 1y67_A 2aw9_A Back     alignment and structure
>1ix9_A Mnsod, superoxide dismutase; manganese superoxide dismutase, Y174F mutant, hydrogen bond, reactivity, ultra-high resolution, oxidoreductase; 0.90A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 1i0h_A 1ixb_A 1zlz_A 1d5n_A 1mmm_A 1vew_A 3k9s_A 3ot7_A 1en5_A 1en4_A 1i08_A 1en6_A Back     alignment and structure
>3lio_A Iron superoxide dismutase; cold adaptation, flexibility, thermal stability, psychrophilic protein, metal-binding, oxidoreduc; HET: TRE; 1.50A {Pseudoalteromonas haloplanktis} PDB: 3lj9_A* 3ljf_A* 3sdp_A Back     alignment and structure
>2nyb_A Superoxide dismutase [FE]; iron superoxide dismutase Q69E, fesod, oxidoreductase; 1.10A {Escherichia coli} SCOP: a.2.11.1 d.44.1.1 PDB: 2bkb_A 1isa_A 1isb_A 1isc_A 1za5_A 2w7w_A Back     alignment and structure
>2rcv_A Superoxide dismutase [MN]; bacillus subtilis,superoxide dismutase, manganese, metal- binding, oxidoreductase, phosphorylation; 1.60A {Bacillus subtilis} PDB: 1xuq_A 1jr9_A Back     alignment and structure
>1uer_A SOD, superoxide dismutase; metal-specific, cambialistic, oxidoreductase; 1.60A {Porphyromonas gingivalis} SCOP: a.2.11.1 d.44.1.1 PDB: 1qnn_A 1ues_A Back     alignment and structure
>2cw2_A Superoxide dismutase 1; SOD, oxidoreductase; 1.86A {Perkinsus marinus} Back     alignment and structure
>1my6_A Iron (III) superoxide dismutase; iron speroxide dismutase, thermophIle, reactive oxygen species, cyanobacteria, SOD, fesod; 1.60A {Thermosynechococcus elongatus} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>2gpc_A Iron superoxide dismutase; alpha+beta structure, oxidoreductase; 1.90A {Trypanosoma cruzi} PDB: 3esf_A Back     alignment and structure
>1dt0_A Superoxide dismutase; pseudomonas ovalis, oxidoreductase; 2.10A {Pseudomonas putida} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>4f2n_A Superoxide dismutase; ssgcid, NIH, niaid, SBRI, emerald biostructures, structural national institute of allergy and infectious diseases; 1.85A {Leishmania major} Back     alignment and structure
>3js4_A Superoxide dismutase; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic, metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure
>2cw3_A Pmsod2, iron superoxide dismutase; oxidoreductase; 2.50A {Perkinsus marinus} Back     alignment and structure
>1coj_A Protein (superoxide dismutase); oxidoreductase; 1.90A {Aquifex pyrophilus} SCOP: a.2.11.1 d.44.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 218
d2p4ka2115 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD 5e-39
d1ma1a2113 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD 3e-38
d1unfx2134 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSO 2e-37
d1bsma2115 d.44.1.1 (A:87-201) Cambialistic superoxide dismut 5e-37
d1p7ga2119 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSO 3e-36
d1wb8a2116 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD 4e-36
d1mnga2111 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD 1e-35
d1idsa2114 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD 4e-35
d1coja2122 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD 8e-35
d1dt0a2114 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD 4e-34
d1ix9a2115 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD 5e-34
d1kkca2116 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD 6e-34
d1y67a2116 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD 1e-33
d1uera2107 d.44.1.1 (A:85-191) Cambialistic superoxide dismut 4e-33
d1jr9a2111 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD 1e-32
d1gv3a2111 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSO 1e-32
d2nyba2110 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD 3e-32
d1my6a2110 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD 6e-32
d1bsma186 a.2.11.1 (A:1-86) Cambialistic superoxide dismutas 1e-28
d1p7ga192 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD 2e-28
d1kkca184 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) 3e-28
d1gv3a1102 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD 5e-28
d1idsa184 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) 1e-27
d1jr9a190 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) 1e-27
d1ix9a190 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) 4e-27
d1ma1a188 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) 7e-27
d2p4ka183 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) 9e-27
d1mnga192 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) 2e-26
d1wb8a189 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) 5e-26
d1uera184 a.2.11.1 (A:1-84) Cambialistic superoxide dismutas 8e-25
d2nyba182 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) 1e-24
d1my6a188 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) 6e-23
d1unfx191 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD 3e-22
d1coja189 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) 1e-20
>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
family: Fe,Mn superoxide dismutase (SOD), C-terminal domain
domain: Mn superoxide dismutase (MnSOD)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 5e-39
 Identities = 70/112 (62%), Positives = 86/112 (76%)

Query: 105 GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQDP 164
           GG+P  +L  AIK  FGS DK K++LTAASVG+QGSGWGWLG++ +   L+IA   NQDP
Sbjct: 3   GGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDP 62

Query: 165 LFETTGLKPLFGIDVWEHAYYLQYKNVRPNYVKAIYDIMNWNYINELYAKAK 216
           L  TTGL PL GIDVWEHAYYLQYKNVRP+Y+KAI++++NW  + E Y   K
Sbjct: 63  LQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACK 114
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 113 Back     information, alignment and structure
>d1unfx2 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Length = 134 Back     information, alignment and structure
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Length = 115 Back     information, alignment and structure
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 119 Back     information, alignment and structure
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 116 Back     information, alignment and structure
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Length = 111 Back     information, alignment and structure
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 114 Back     information, alignment and structure
>d1coja2 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Length = 122 Back     information, alignment and structure
>d1dt0a2 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD) {Pseudomonas ovalis [TaxId: 303]} Length = 114 Back     information, alignment and structure
>d1ix9a2 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Length = 115 Back     information, alignment and structure
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Length = 116 Back     information, alignment and structure
>d1y67a2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Deinococcus radiodurans [TaxId: 1299]} Length = 116 Back     information, alignment and structure
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Length = 107 Back     information, alignment and structure
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Length = 111 Back     information, alignment and structure
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Length = 111 Back     information, alignment and structure
>d2nyba2 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Length = 110 Back     information, alignment and structure
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Length = 110 Back     information, alignment and structure
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Length = 86 Back     information, alignment and structure
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 92 Back     information, alignment and structure
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Length = 84 Back     information, alignment and structure
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Length = 102 Back     information, alignment and structure
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 84 Back     information, alignment and structure
>d1jr9a1 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Length = 90 Back     information, alignment and structure
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Length = 90 Back     information, alignment and structure
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 88 Back     information, alignment and structure
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Length = 92 Back     information, alignment and structure
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 89 Back     information, alignment and structure
>d1uera1 a.2.11.1 (A:1-84) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Length = 84 Back     information, alignment and structure
>d2nyba1 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Length = 82 Back     information, alignment and structure
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Length = 88 Back     information, alignment and structure
>d1unfx1 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Length = 91 Back     information, alignment and structure
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Length = 89 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
d1wb8a2116 Fe superoxide dismutase (FeSOD) {Archaeon Sulfolob 100.0
d1ma1a2113 Fe superoxide dismutase (FeSOD) {Archaeon Methanob 100.0
d1p7ga2119 Fe superoxide dismutase (FeSOD) {Archaeon Pyrobacu 100.0
d2p4ka2115 Mn superoxide dismutase (MnSOD) {Human (Homo sapie 100.0
d1gv3a2111 Mn superoxide dismutase (MnSOD) {Anabaena sp. [Tax 100.0
d1bsma2115 Cambialistic superoxide dismutase {Propionibacteri 100.0
d1mnga2111 Mn superoxide dismutase (MnSOD) {Thermus thermophi 100.0
d1kkca2116 Mn superoxide dismutase (MnSOD) {Aspergillus fumig 100.0
d1idsa2114 Fe superoxide dismutase (FeSOD) {Mycobacterium tub 100.0
d1uera2107 Cambialistic superoxide dismutase {Porphyromonas g 100.0
d1dt0a2114 Fe superoxide dismutase (FeSOD) {Pseudomonas ovali 100.0
d2nyba2110 Fe superoxide dismutase (FeSOD) {Escherichia coli 100.0
d1ix9a2115 Mn superoxide dismutase (MnSOD) {Escherichia coli 100.0
d1jr9a2111 Mn superoxide dismutase (MnSOD) {Bacillus halodeni 100.0
d1my6a2110 Fe superoxide dismutase (FeSOD) {Thermosynechococc 100.0
d1coja2122 Fe superoxide dismutase (FeSOD) {Aquifex pyrophilu 100.0
d1unfx2134 Fe superoxide dismutase (FeSOD) {Cowpea (Vigna ung 100.0
d1y67a2116 Mn superoxide dismutase (MnSOD) {Deinococcus radio 100.0
d1kkca184 Mn superoxide dismutase (MnSOD) {Aspergillus fumig 99.98
d2p4ka183 Mn superoxide dismutase (MnSOD) {Human (Homo sapie 99.98
d1bsma186 Cambialistic superoxide dismutase {Propionibacteri 99.98
d1idsa184 Fe superoxide dismutase (FeSOD) {Mycobacterium tub 99.97
d1uera184 Cambialistic superoxide dismutase {Porphyromonas g 99.97
d2nyba182 Fe superoxide dismutase (FeSOD) {Escherichia coli 99.97
d1gv3a1102 Mn superoxide dismutase (MnSOD) {Anabaena sp. [Tax 99.97
d1p7ga192 Fe superoxide dismutase (FeSOD) {Archaeon Pyrobacu 99.97
d1mnga192 Mn superoxide dismutase (MnSOD) {Thermus thermophi 99.97
d1jr9a190 Mn superoxide dismutase (MnSOD) {Bacillus halodeni 99.97
d1ma1a188 Fe superoxide dismutase (FeSOD) {Archaeon Methanob 99.97
d1my6a188 Fe superoxide dismutase (FeSOD) {Thermosynechococc 99.97
d1unfx191 Fe superoxide dismutase (FeSOD) {Cowpea (Vigna ung 99.97
d1wb8a189 Fe superoxide dismutase (FeSOD) {Archaeon Sulfolob 99.97
d1ix9a190 Mn superoxide dismutase (MnSOD) {Escherichia coli 99.97
d1coja189 Fe superoxide dismutase (FeSOD) {Aquifex pyrophilu 99.88
>d1wb8a2 d.44.1.1 (A:93-208) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Fe,Mn superoxide dismutase (SOD), C-terminal domain
superfamily: Fe,Mn superoxide dismutase (SOD), C-terminal domain
family: Fe,Mn superoxide dismutase (SOD), C-terminal domain
domain: Fe superoxide dismutase (FeSOD)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=9.5e-51  Score=313.40  Aligned_cols=110  Identities=36%  Similarity=0.671  Sum_probs=106.1

Q ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCccceEEEEEEeCCCCeeEEEeecCCC-CCCCCCCCeeeeeeccCchh
Q psy16344        105 GGKPSDDLSNAIKASFGSLDKLKDELTAASVGIQGSGWGWLGYDPKSKSLKIATTANQD-PLFETTGLKPLFGIDVWEHA  183 (218)
Q Consensus       105 ~~~p~~~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvWLv~~~~~~~L~i~~t~n~~-p~~~~~~~~PLL~iDvWEHA  183 (218)
                      |++|++.|+++|+++|||+|+||++|+++|.++|||||||||+|+++|+|.|++|.|++ |+  ..+..|||||||||||
T Consensus         6 g~~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~~~~~~~l~i~~~~n~~~~~--~~~~~piL~lDvWEHA   83 (116)
T d1wb8a2           6 GGKPGGALADLINKQYGSFDRFKQVFTETANSLPGTGWAVLYYDTESGNLQIMTFENHFQNH--IAEIPIILILDEFEHA   83 (116)
T ss_dssp             SSCCCHHHHHHHHHHHSSHHHHHHHHHHHHHTCCSSEEEEEEECTTTCCEEEEEEETTTBSC--CSSCCEEEEEECSGGG
T ss_pred             CCCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCcccceEEEEEeCcCCcccccccccCCCCc--cCCCceeeeecchhhh
Confidence            36899999999999999999999999999999999999999999988999999999999 98  7789999999999999


Q ss_pred             hHhhhcCChHHHHHHHhcCCChHHHHHHHHHHh
Q psy16344        184 YYLQYKNVRPNYVKAIYDIMNWNYINELYAKAK  216 (218)
Q Consensus       184 YyldY~n~r~~Yi~~~w~~InW~~V~~r~~~a~  216 (218)
                      ||+||+|+|++||++||++|||++||+||++|+
T Consensus        84 YyldY~n~r~~Yi~~~~~~iNW~~ve~rl~~~~  116 (116)
T d1wb8a2          84 YYLQYKNKRADYVNAWWNVVNWDAAEKKLQKYL  116 (116)
T ss_dssp             THHHHTTCHHHHHHHHGGGBCHHHHHHHHHHTC
T ss_pred             hHHHHhccHHHHHHHHHHHcCHHHHHHHHHHhC
Confidence            999999999999999999999999999999874
>d1ma1a2 d.44.1.1 (A:92-204) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2p4ka2 d.44.1.1 (A:84-198) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv3a2 d.44.1.1 (A:127-237) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Back     information, alignment and structure
>d1bsma2 d.44.1.1 (A:87-201) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1mnga2 d.44.1.1 (A:93-203) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kkca2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1uera2 d.44.1.1 (A:85-191) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1dt0a2 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD) {Pseudomonas ovalis [TaxId: 303]} Back     information, alignment and structure
>d2nyba2 d.44.1.1 (A:83-192) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ix9a2 d.44.1.1 (A:91-205) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1coja2 d.44.1.1 (A:91-212) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Back     information, alignment and structure
>d1unfx2 d.44.1.1 (X:105-238) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Back     information, alignment and structure
>d1y67a2 d.44.1.1 (A:98-213) Mn superoxide dismutase (MnSOD) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1kkca1 a.2.11.1 (A:14-97) Mn superoxide dismutase (MnSOD) {Aspergillus fumigatus [TaxId: 5085]} Back     information, alignment and structure
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1idsa1 a.2.11.1 (A:2-85) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1uera1 a.2.11.1 (A:1-84) Cambialistic superoxide dismutase {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d2nyba1 a.2.11.1 (A:1-82) Fe superoxide dismutase (FeSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gv3a1 a.2.11.1 (A:25-126) Mn superoxide dismutase (MnSOD) {Anabaena sp. [TaxId: 1167]} Back     information, alignment and structure
>d1p7ga1 a.2.11.1 (A:12-103) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1mnga1 a.2.11.1 (A:1-92) Mn superoxide dismutase (MnSOD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jr9a1 a.2.11.1 (A:2-91) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]} Back     information, alignment and structure
>d1ma1a1 a.2.11.1 (A:4-91) Fe superoxide dismutase (FeSOD) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1my6a1 a.2.11.1 (A:1-88) Fe superoxide dismutase (FeSOD) {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1unfx1 a.2.11.1 (X:14-104) Fe superoxide dismutase (FeSOD) {Cowpea (Vigna unguiculata) [TaxId: 3917]} Back     information, alignment and structure
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1ix9a1 a.2.11.1 (A:1-90) Mn superoxide dismutase (MnSOD) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1coja1 a.2.11.1 (A:2-90) Fe superoxide dismutase (FeSOD) {Aquifex pyrophilus [TaxId: 2714]} Back     information, alignment and structure